BLASTX nr result
ID: Rehmannia28_contig00000275
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00000275
(8671 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus] 1219 0.0
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus] 1217 0.0
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus] 1216 0.0
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus] 1215 0.0
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus... 1214 0.0
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus] 1213 0.0
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc... 1212 0.0
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc... 1206 0.0
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc... 947 0.0
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc... 945 0.0
gb|AKN08994.1| replicase [Caucasus prunus virus] 900 0.0
ref|YP_008997790.1| replication-associated polyprotein [Apricot ... 863 0.0
gb|AKN09002.1| replicase [Apricot vein clearing associated virus] 865 0.0
gb|AKN08998.1| replicase [Apricot vein clearing associated virus] 863 0.0
gb|AFA43541.1| coat protein [Citrus leaf blotch virus] 707 0.0
gb|AFA43526.1| coat protein [Citrus leaf blotch virus] gi|375271... 704 0.0
gb|AFA43545.1| coat protein [Citrus leaf blotch virus] 702 0.0
gb|AFA43547.1| coat protein [Citrus leaf blotch virus] 702 0.0
gb|AFA43544.1| coat protein [Citrus leaf blotch virus] 701 0.0
gb|AFA43543.1| coat protein [Citrus leaf blotch virus] 701 0.0
>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
Length = 1962
Score = 1219 bits (3153), Expect = 0.0
Identities = 608/989 (61%), Positives = 743/989 (75%), Gaps = 6/989 (0%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
KN CLI+A S+A+K +++ + L + N P+W ++ + G S++DC E L +++++
Sbjct: 979 KNTCLINAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDL 1038
Query: 5544 HMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKISN 5365
++ ++ G + + + HFS + M R+ SHL K NV+ +G E +S
Sbjct: 1039 NVNGKYVVLGKGALRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSG 1098
Query: 5364 ---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIS 5194
+ N + F A+ E+ RIL SFL TTG+ LG+ LDNG KYF L + + I
Sbjct: 1099 DVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHI--LKDRVKQIG 1156
Query: 5193 TQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTF 5014
T + + GFAGSGKS+ +Q WL KK FCVVSPR LA+DW FKL L + KV TF
Sbjct: 1157 TDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTF 1216
Query: 5013 ESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDH 4834
E FIK ++ L+LIV+DE+TLFPNGY+D LVY+L N +++LLFDPLQARYH++ D
Sbjct: 1217 EKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDE 1276
Query: 4833 GILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPE 4660
IL+F+HDVDR++ + + Y+Y + R++ F R F D+P N+ + + ++WI
Sbjct: 1277 SILTFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFF--DVPCFNQADRTEEQRLWIFDDVY 1334
Query: 4659 DIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNE 4483
I +R +P DV+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE
Sbjct: 1335 SIPSICSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNE 1394
Query: 4482 LRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIF 4303
RW VA TRA+ R S + LGG+++F + K +L IL GE + + M++ LI
Sbjct: 1395 FRWMVALTRARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIR 1454
Query: 4302 KDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEP 4123
++ G DE+DREERLEGDPFLKP+IFLGQR+E E E E + EP CQTHLYI+EP
Sbjct: 1455 REKE-NGCRDEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEP 1513
Query: 4122 NFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHG 3943
NF YNFD IR KE+REYREDMLVT+QFCDSY+K T GP+RFK+IYPKHS
Sbjct: 1514 NFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSAD 1573
Query: 3942 DDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVND 3763
DDMTFWMAV+KRL+FR E+EN +RL+ AHL+GGL+Y +FK+ L+F +DQGLLE +N
Sbjct: 1574 DDMTFWMAVRKRLIFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINA 1633
Query: 3762 FEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHL 3583
FE KKL+KS TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHL
Sbjct: 1634 FEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHL 1693
Query: 3582 ILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQ 3403
ILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF RDICVESDYEAFDA Q
Sbjct: 1694 ILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQ 1753
Query: 3402 DEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMA 3223
DEYILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMA
Sbjct: 1754 DEYILSFEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMA 1813
Query: 3222 FTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLT 3043
FTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F ISLKAKVERTE PMFCGWRLT
Sbjct: 1814 FTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLT 1873
Query: 3042 PYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQA 2863
PYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQA
Sbjct: 1874 PYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQA 1933
Query: 2862 VVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2776
VVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1934 VVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962
Score = 488 bits (1256), Expect = e-137
Identities = 254/574 (44%), Positives = 351/574 (61%), Gaps = 38/574 (6%)
Frame = -3
Query: 8552 KKNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSK 8373
+K + IY AA+ ++SHSE N FA++++ + KK S +G+EL+PNGYLPHSHP SK
Sbjct: 18 EKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPNGYLPHSHPLSK 77
Query: 8372 TLENHMLYVVLPSVINNDEFLFCSIKEKK-----------------LNCIVARQN--LSL 8250
ENH+L+ VLP V+N + CSIKE K LN + + N S
Sbjct: 78 IFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSLNNSHTSF 137
Query: 8249 LNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXX 8070
+N +V +DVSRY E F + FS K+L +++ FFHDEVHHW+
Sbjct: 138 INRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEVHHWTKAQ 195
Query: 8069 XXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQP 7890
+ +R +F+VVYPPE+L + NSQNPK+Y FK+ + +LFFFPDGV +E Y+Q
Sbjct: 196 MFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 255
Query: 7889 ANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIF 7710
N+ WLF +L GD WT+ RH S +AHHLFEI G+L+++ F++D++ +DM IF
Sbjct: 256 LNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSIDMSKIF 315
Query: 7709 KNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCK 7530
+RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDVE+KEFLFFEQ CK
Sbjct: 316 LDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 375
Query: 7529 RFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQR 7350
R IER TS+G+FGHS FE L + P++ R WK N F+FL+ LGTL ++V+R
Sbjct: 376 RLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTLVVDVER 435
Query: 7349 GTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDDGYLERVKLPFFNYKGDP 7170
C+ H+LE++ FEVV D + +LDPL F NEN+NE+R+DDGYLER++LPF+N
Sbjct: 436 KVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPFWNLNDYD 495
Query: 7169 RKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW-----------ISNDHRFVRFS 7032
KR+ Y+ L + E + S K L+I W ISN
Sbjct: 496 LKRKRVNAYNILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKEFKVDPFISNSITEFTLL 554
Query: 7031 RAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 6945
A++ +D KK+ + +N + FL EG
Sbjct: 555 EALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587
Score = 258 bits (659), Expect = 3e-65
Identities = 137/291 (47%), Positives = 181/291 (62%), Gaps = 6/291 (2%)
Frame = -3
Query: 6590 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6411
+I Y D+F C +HG I P+DGNCFF A +TFE VE +RSDFS WL E +
Sbjct: 666 EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724
Query: 6410 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 6249
S+ L E+I +GVFME ELIYLF + RG+ +++H ++V+A G EGH+
Sbjct: 725 GSYASLAEMIRPNGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784
Query: 6248 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6069
G+HF+ ET+ ++ S L+ I + ++ K+ F F C FRGRKAAF +KV A
Sbjct: 785 GNHFVGIETYNISTLTSDPLLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844
Query: 6068 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5889
DYGHNGM+YP N W+PSL+EIIQ C +N ALI +YE ++LG HRDNE VY+D I
Sbjct: 845 DYGHNGMVYPHNSWVPSLEEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPI 904
Query: 5888 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVX*KNQYP 5736
LTV G F +E + + F M+ SFF+MPKGFQKKARH V N+ P
Sbjct: 905 LTVCTFGEGTFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSV--SNEMP 953
>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1217 bits (3150), Expect = 0.0
Identities = 615/988 (62%), Positives = 740/988 (74%), Gaps = 5/988 (0%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
+N CLI A+S+AL + + L + N P+W F+ D G S++DC E L I++++
Sbjct: 1005 RNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDL 1064
Query: 5544 HMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKI-S 5368
++ ++ G V + HFS ++E ++ R+ SHL KSN+ GL E + S
Sbjct: 1065 FVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQS 1124
Query: 5367 NMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIST 5191
MS N + F A E+ R+L SFL TTG+ L LDNG KYF E + I
Sbjct: 1125 EMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSE--ERPKQIGF 1182
Query: 5190 QLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFE 5011
+ + GFAGSGKS+ +Q WL K+ FCVVSPRN LA+DW FKL L + KV TFE
Sbjct: 1183 DVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFE 1242
Query: 5010 SFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHG 4831
SFIK ++ L++IVLDE+TLFPNGY+D L+Y+L NS ++LLFDPLQARYH++ D
Sbjct: 1243 SFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEA 1302
Query: 4830 ILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPED 4657
+L+F+HDVDR++ +++ Y+Y S R++ F R F D+P N+ ET + ++WI+
Sbjct: 1303 VLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQAETTKEQRLWILDDVYS 1360
Query: 4656 IRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNEL 4480
I ++ +P DV+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE
Sbjct: 1361 ITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEF 1420
Query: 4479 RWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFK 4300
RW VA TRAK R+SF + LGG+D+F I +L IL G+ + M++ LI K
Sbjct: 1421 RWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-K 1479
Query: 4299 DLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPN 4120
G +DE+DREERLEGDPFLKP+IFLG R++ E + EP CQTHLYI+EPN
Sbjct: 1480 QEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPN 1539
Query: 4119 FAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGD 3940
F YNFD IR KE+REYREDMLVT+QFCDSY+K T GP+RFK+IYPKHS D
Sbjct: 1540 FGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADD 1599
Query: 3939 DMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDF 3760
DMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK L+F +DQGL E VN F
Sbjct: 1600 DMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAF 1659
Query: 3759 EVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLI 3580
E KKL+KS TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLI
Sbjct: 1660 EKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLI 1719
Query: 3579 LVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQD 3400
LVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVK FF +DICVESDYEAFDACQD
Sbjct: 1720 LVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQD 1779
Query: 3399 EYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAF 3220
EYILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AF
Sbjct: 1780 EYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAF 1839
Query: 3219 TMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTP 3040
T+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F ISLKAKVERTE PMFCGWRLTP
Sbjct: 1840 TLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTP 1899
Query: 3039 YGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAV 2860
YGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAV
Sbjct: 1900 YGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAV 1959
Query: 2859 VRFIVTHIDKLKTKVKDLFQEQSSDEDI 2776
VRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1960 VRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987
Score = 486 bits (1250), Expect = e-136
Identities = 237/518 (45%), Positives = 329/518 (63%), Gaps = 22/518 (4%)
Frame = -3
Query: 8552 KKNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSK 8373
+K + +Y AA+ ++SHSE N FA+A+ + KK S +G+EL+PNGY+PHSHP SK
Sbjct: 18 EKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELYPNGYMPHSHPLSK 77
Query: 8372 TLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------------------ARQNLS 8253
ENH+L+ VLP V++ + + CSIKE K+ A + S
Sbjct: 78 IFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALGFCGKDTSASDHTS 137
Query: 8252 LLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXX 8073
+N +V +D+ RY E FS D FS+ + + +++ FFHDEVHHW+
Sbjct: 138 FINRLVASKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKA 196
Query: 8072 XXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQ 7893
+ RR +F++VYPPELL + NSQNPK+Y FK+ + +LFFFPDGV +E Y+Q
Sbjct: 197 QMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQ 256
Query: 7892 PANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHI 7713
N+ WLF + GD+TWT+ RH S ++HHLFE+ G+LIS+ F++D+ +DM I
Sbjct: 257 KLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKI 316
Query: 7712 FKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLC 7533
F +RF+ Y++FP+ +H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDVE+KEFLFFEQ C
Sbjct: 317 FLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFC 376
Query: 7532 KRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQ 7353
KR IER TS+G+FG+S F+ L + P+ R WK N F+FL+ LGTL +E++
Sbjct: 377 KRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIE 436
Query: 7352 RGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDDGYLERVKLPFFNYKGD 7173
R C+ HILE++ FEVV D + +LDPL F NEN+NEER+DDGYL+RVKLPF+N K
Sbjct: 437 RRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDY 496
Query: 7172 PRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 7065
KR + ++ R + +E+ P L+I W
Sbjct: 497 DPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534
Score = 239 bits (611), Expect = 2e-59
Identities = 129/291 (44%), Positives = 176/291 (60%), Gaps = 6/291 (2%)
Frame = -3
Query: 6590 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6411
+I + D+F+ C +HG I P DGNCFF A TF+C ++ ++RS+F+ WL D
Sbjct: 692 EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750
Query: 6410 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 6249
S+ + I +GVFME ELIYLF I R + +++H ND VFA G EGH+
Sbjct: 751 GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810
Query: 6248 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6069
G HF+ ET+ ++ S + + Y +L + F F C FRGRK AF +KV A
Sbjct: 811 GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870
Query: 6068 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5889
DYGHNGM+YP N W+PSLDEII+ CD +N ALI +Y ++LG HRDNE VY+D I
Sbjct: 871 DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930
Query: 5888 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVX*KNQYP 5736
LTV G F +E +++ F M+ SFF+MP+GFQ+KARH V +N+ P
Sbjct: 931 LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSV--RNELP 979
>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1216 bits (3146), Expect = 0.0
Identities = 614/988 (62%), Positives = 739/988 (74%), Gaps = 5/988 (0%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
+N CLI A+S+AL + + L + N P+W F+ D G S++DC E L I++++
Sbjct: 1005 RNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDL 1064
Query: 5544 HMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKI-S 5368
++ ++ G V + HFS ++E ++ R+ SHL KSN+ GL E + S
Sbjct: 1065 FVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQS 1124
Query: 5367 NMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIST 5191
MS N + F A E+ R+L SFL TTG+ L LDNG KYF E + I
Sbjct: 1125 EMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSE--ERPKQIGF 1182
Query: 5190 QLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFE 5011
+ + GFAGSGKS+ +Q WL K+ FCVVSPRN LA+DW FKL L + KV TFE
Sbjct: 1183 DVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFE 1242
Query: 5010 SFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHG 4831
SFIK ++ L++IVLDE+TLFPNGY+D L+Y+L NS ++LLFDPLQARYH++ D
Sbjct: 1243 SFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEA 1302
Query: 4830 ILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPED 4657
+L+F+HDVDR++ +++ Y+Y S R++ F R F D+P N+ ET + ++WI+
Sbjct: 1303 VLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQAETTKEQRLWILDDVYS 1360
Query: 4656 IRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNEL 4480
I ++ +P DV+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE
Sbjct: 1361 ITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEF 1420
Query: 4479 RWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFK 4300
RW VA TRAK R+SF + LGG+D+F I +L IL G+ + M++ LI K
Sbjct: 1421 RWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-K 1479
Query: 4299 DLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPN 4120
G +DE+DREERLEGDPFLKP+IFLG R++ E + EP CQTHLYI+EPN
Sbjct: 1480 QEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPN 1539
Query: 4119 FAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGD 3940
F YNFD IR KE+REYREDMLVT+QFCDSY+K T GP+RFK+IYPKHS D
Sbjct: 1540 FGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADD 1599
Query: 3939 DMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDF 3760
DMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK L+F +DQGL E VN F
Sbjct: 1600 DMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAF 1659
Query: 3759 EVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLI 3580
E KKL+KS TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLI
Sbjct: 1660 EKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLI 1719
Query: 3579 LVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQD 3400
LVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVK FF +DICVESDYEAFD CQD
Sbjct: 1720 LVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQD 1779
Query: 3399 EYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAF 3220
EYILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AF
Sbjct: 1780 EYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAF 1839
Query: 3219 TMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTP 3040
T+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F ISLKAKVERTE PMFCGWRLTP
Sbjct: 1840 TLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTP 1899
Query: 3039 YGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAV 2860
YGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAV
Sbjct: 1900 YGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAV 1959
Query: 2859 VRFIVTHIDKLKTKVKDLFQEQSSDEDI 2776
VRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1960 VRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987
Score = 484 bits (1247), Expect = e-135
Identities = 237/518 (45%), Positives = 329/518 (63%), Gaps = 22/518 (4%)
Frame = -3
Query: 8552 KKNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSK 8373
+K + +Y AA+ ++SHSE N FA+A+ + KK S +G+EL+PNGY+PHSHP SK
Sbjct: 18 EKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELYPNGYMPHSHPLSK 77
Query: 8372 TLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------------------ARQNLS 8253
ENH+L+ VLP V++ + + CSIKE K+ A + S
Sbjct: 78 IFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALGFCGKDTSASDHTS 137
Query: 8252 LLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXX 8073
+N +V +D+ RY E FS D FS+ + + +++ FFHDEVHHW+
Sbjct: 138 FVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKA 196
Query: 8072 XXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQ 7893
+ RR +F++VYPPELL + NSQNPK+Y FK+ + +LFFFPDGV +E Y+Q
Sbjct: 197 QMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQ 256
Query: 7892 PANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHI 7713
N+ WLF + GD+TWT+ RH S ++HHLFE+ G+LIS+ F++D+ +DM I
Sbjct: 257 KLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKI 316
Query: 7712 FKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLC 7533
F +RF+ Y++FP+ +H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDVE+KEFLFFEQ C
Sbjct: 317 FLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFC 376
Query: 7532 KRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQ 7353
KR IER TS+G+FG+S F+ L + P+ R WK N F+FL+ LGTL +E++
Sbjct: 377 KRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIE 436
Query: 7352 RGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDDGYLERVKLPFFNYKGD 7173
R C+ HILE++ FEVV D + +LDPL F NEN+NEER+DDGYL+RVKLPF+N K
Sbjct: 437 RRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDY 496
Query: 7172 PRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 7065
KR + ++ R + +E+ P L+I W
Sbjct: 497 DPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534
Score = 239 bits (611), Expect = 2e-59
Identities = 129/291 (44%), Positives = 176/291 (60%), Gaps = 6/291 (2%)
Frame = -3
Query: 6590 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6411
+I + D+F+ C +HG I P DGNCFF A TF+C ++ ++RS+F+ WL D
Sbjct: 692 EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750
Query: 6410 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 6249
S+ + I +GVFME ELIYLF I R + +++H ND VFA G EGH+
Sbjct: 751 GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810
Query: 6248 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6069
G HF+ ET+ ++ S + + Y +L + F F C FRGRK AF +KV A
Sbjct: 811 GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870
Query: 6068 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5889
DYGHNGM+YP N W+PSLDEII+ CD +N ALI +Y ++LG HRDNE VY+D I
Sbjct: 871 DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930
Query: 5888 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVX*KNQYP 5736
LTV G F +E +++ F M+ SFF+MP+GFQ+KARH V +N+ P
Sbjct: 931 LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSV--RNELP 979
>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1215 bits (3144), Expect = 0.0
Identities = 614/988 (62%), Positives = 739/988 (74%), Gaps = 5/988 (0%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
+N CLI A+S+AL + + L + N P+W F+ D G S++DC E L I++++
Sbjct: 1005 RNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDL 1064
Query: 5544 HMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKI-S 5368
++ ++ G V + HFS ++E ++ R+ SHL KSN+ GL E + S
Sbjct: 1065 FVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQS 1124
Query: 5367 NMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIST 5191
MS N + F A E+ R+L SFL TTG+ L LDNG KYF E + I
Sbjct: 1125 EMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSE--ERPKQIGF 1182
Query: 5190 QLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFE 5011
+ + GFAGSGKS+ +Q WL K+ FCVVSPRN LA+DW FKL L + KV TFE
Sbjct: 1183 DVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFE 1242
Query: 5010 SFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHG 4831
SFIK ++ L++IVLDE+TLFPNGY+D L+Y+L NS ++LLFDPLQARYH++ D
Sbjct: 1243 SFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEA 1302
Query: 4830 ILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPED 4657
+L+F+HDVDR++ +++ Y+Y S R++ F R F D+P N+ ET + ++WI+
Sbjct: 1303 VLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQAETTKEQRLWILDDVYS 1360
Query: 4656 IRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNEL 4480
I ++ +P DV+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE
Sbjct: 1361 ITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEF 1420
Query: 4479 RWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFK 4300
RW VA TRAK R+SF + LGG+D+F I +L IL G+ + M++ LI K
Sbjct: 1421 RWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLI-K 1479
Query: 4299 DLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPN 4120
G +DE+DREERLEGDPFLKP+IFLGQR++ E + EP CQTHLYI+EPN
Sbjct: 1480 QEKKNGCSDEVDREERLEGDPFLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPN 1539
Query: 4119 FAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGD 3940
F YNFD IR KE+REYREDMLVT+QFCDSY+K T GP+RFK+IYPKHS D
Sbjct: 1540 FGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADD 1599
Query: 3939 DMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDF 3760
DMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK L+F +DQGL E VN F
Sbjct: 1600 DMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAF 1659
Query: 3759 EVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLI 3580
E KKL+KS TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLI
Sbjct: 1660 EKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLI 1719
Query: 3579 LVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQD 3400
LVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDL WVK FF +DICVESDYEAFD CQD
Sbjct: 1720 LVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQD 1779
Query: 3399 EYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAF 3220
EYILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AF
Sbjct: 1780 EYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAF 1839
Query: 3219 TMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTP 3040
T+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F ISLKAKVERTE PMFCGWRLTP
Sbjct: 1840 TLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTP 1899
Query: 3039 YGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAV 2860
YGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAV
Sbjct: 1900 YGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAV 1959
Query: 2859 VRFIVTHIDKLKTKVKDLFQEQSSDEDI 2776
VRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1960 VRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987
Score = 484 bits (1247), Expect = e-135
Identities = 237/518 (45%), Positives = 329/518 (63%), Gaps = 22/518 (4%)
Frame = -3
Query: 8552 KKNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSK 8373
+K + +Y AA+ ++SHSE N FA+A+ + KK S +G+EL+PNGY+PHSHP SK
Sbjct: 18 EKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELYPNGYMPHSHPLSK 77
Query: 8372 TLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------------------ARQNLS 8253
ENH+L+ VLP V++ + + CSIKE K+ A + S
Sbjct: 78 IFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALGFCGKDTSASDHTS 137
Query: 8252 LLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXX 8073
+N +V +D+ RY E FS D FS+ + + +++ FFHDEVHHW+
Sbjct: 138 FVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKA 196
Query: 8072 XXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQ 7893
+ RR +F++VYPPELL + NSQNPK+Y FK+ + +LFFFPDGV +E Y+Q
Sbjct: 197 QMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQ 256
Query: 7892 PANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHI 7713
N+ WLF + GD+TWT+ RH S ++HHLFE+ G+LIS+ F++D+ +DM I
Sbjct: 257 KLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKI 316
Query: 7712 FKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLC 7533
F +RF+ Y++FP+ +H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDVE+KEFLFFEQ C
Sbjct: 317 FLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFC 376
Query: 7532 KRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQ 7353
KR IER TS+G+FG+S F+ L + P+ R WK N F+FL+ LGTL +E++
Sbjct: 377 KRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIE 436
Query: 7352 RGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDDGYLERVKLPFFNYKGD 7173
R C+ HILE++ FEVV D + +LDPL F NEN+NEER+DDGYL+RVKLPF+N K
Sbjct: 437 RRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDY 496
Query: 7172 PRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 7065
KR + ++ R + +E+ P L+I W
Sbjct: 497 DPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534
Score = 239 bits (611), Expect = 2e-59
Identities = 129/291 (44%), Positives = 176/291 (60%), Gaps = 6/291 (2%)
Frame = -3
Query: 6590 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6411
+I + D+F+ C +HG I P DGNCFF A TF+C ++ ++RS+F+ WL D
Sbjct: 692 EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750
Query: 6410 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 6249
S+ + I +GVFME ELIYLF I R + +++H ND VFA G EGH+
Sbjct: 751 GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810
Query: 6248 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6069
G HF+ ET+ ++ S + + Y +L + F F C FRGRK AF +KV A
Sbjct: 811 GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870
Query: 6068 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5889
DYGHNGM+YP N W+PSLDEII+ CD +N ALI +Y ++LG HRDNE VY+D I
Sbjct: 871 DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930
Query: 5888 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVX*KNQYP 5736
LTV G F +E +++ F M+ SFF+MP+GFQ+KARH V +N+ P
Sbjct: 931 LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSV--RNELP 979
>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
replication polyprotein; AltName: Full=ORF1 protein;
Includes: RecName: Full=Viral methyltransferase;
Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate
dioxygenase; Includes: RecName: Full=Protease; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|14270249|emb|CAC39422.1|
hypothetical protein [Citrus leaf blotch virus]
Length = 1962
Score = 1214 bits (3140), Expect = 0.0
Identities = 607/989 (61%), Positives = 741/989 (74%), Gaps = 6/989 (0%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
KN CLI+A S+A+K +++ + L + N P+W ++ + G S++DC E L +++++
Sbjct: 979 KNTCLINAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDL 1038
Query: 5544 HMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKISN 5365
++ ++ G + + + HFS + M R+ SHL K NV+ +G +S
Sbjct: 1039 NVNGKCVVLGKGALRISMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSG 1098
Query: 5364 ---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIS 5194
+ N + F A+ E+ RIL SFL TTG+ LG+ LDNG KYF L + + I
Sbjct: 1099 DVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHI--LKDRVKQIG 1156
Query: 5193 TQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTF 5014
+ + GFAGSGKS+ +Q WL KK FCVVSPR LA+DW FKL L + KV TF
Sbjct: 1157 IDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTF 1216
Query: 5013 ESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDH 4834
E FIK ++ L+LIV+DE+TLFPNGY+D LVY+L N +++LLFDPLQARYH++ D
Sbjct: 1217 EKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDE 1276
Query: 4833 GILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPE 4660
IL+F+HDVDR++ + + Y+Y + R++ F R F D+P N+ + + ++WI
Sbjct: 1277 SILTFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFF--DVPCFNQADRTEEQRLWIFDDVY 1334
Query: 4659 DIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNE 4483
I +R +P DV+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE
Sbjct: 1335 SIPSICSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNE 1394
Query: 4482 LRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIF 4303
RW VA TRA+ R S + LGG+++F + K +L IL GE + + M++ LI
Sbjct: 1395 FRWMVALTRARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIR 1454
Query: 4302 KDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEP 4123
++ G DE+DREERLEGDPFLKP+IFLGQR+E E E E + EP CQTHLYI+EP
Sbjct: 1455 REKE-NGCRDEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEP 1513
Query: 4122 NFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHG 3943
NF YNFD IR KE+REYREDMLVT+QFCDSY+K T GP+RFK+IYPKHS
Sbjct: 1514 NFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSAD 1573
Query: 3942 DDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVND 3763
DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+ L+F +DQGLLE +N
Sbjct: 1574 DDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINA 1633
Query: 3762 FEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHL 3583
FE KKL+KS TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHL
Sbjct: 1634 FEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHL 1693
Query: 3582 ILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQ 3403
ILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF RDICVESDYEAFDA Q
Sbjct: 1694 ILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQ 1753
Query: 3402 DEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMA 3223
DEYILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMA
Sbjct: 1754 DEYILSFEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMA 1813
Query: 3222 FTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLT 3043
FTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F ISLKAKVERTE PMFCGWRLT
Sbjct: 1814 FTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLT 1873
Query: 3042 PYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQA 2863
PYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQA
Sbjct: 1874 PYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQA 1933
Query: 2862 VVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2776
VVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1934 VVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962
Score = 488 bits (1256), Expect = e-137
Identities = 254/574 (44%), Positives = 351/574 (61%), Gaps = 38/574 (6%)
Frame = -3
Query: 8552 KKNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSK 8373
+K + IY AA+ ++SHSE N FA++++ + KK S +G+EL+PNGYLPHSHP SK
Sbjct: 18 EKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPNGYLPHSHPLSK 77
Query: 8372 TLENHMLYVVLPSVINNDEFLFCSIKEKK-----------------LNCIVARQN--LSL 8250
ENH+L+ VLP V+N + CSIKE K LN + + N S
Sbjct: 78 IFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSLNNSHTSF 137
Query: 8249 LNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXX 8070
+N +V +DVSRY E F + FS K+L +++ FFHDEVHHW+
Sbjct: 138 INRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEVHHWTKAQ 195
Query: 8069 XXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQP 7890
+ +R +F+VVYPPE+L + NSQNPK+Y FK+ + +LFFFPDGV +E Y+Q
Sbjct: 196 MFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 255
Query: 7889 ANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIF 7710
N+ WLF +L GD WT+ RH S +AHHLFEI G+L+++ F++D++ +DM IF
Sbjct: 256 LNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSIDMSKIF 315
Query: 7709 KNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCK 7530
+RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDVE+KEFLFFEQ CK
Sbjct: 316 LDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 375
Query: 7529 RFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQR 7350
R IER TS+G+FGHS FE L + P++ R WK N F+FL+ LGTL ++V+R
Sbjct: 376 RLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTLVVDVER 435
Query: 7349 GTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDDGYLERVKLPFFNYKGDP 7170
C+ H+LE++ FEVV D + +LDPL F NEN+NE+R+DDGYLER++LPF+N
Sbjct: 436 KVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPFWNLNDYD 495
Query: 7169 RKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW-----------ISNDHRFVRFS 7032
KR+ Y+ L + E + S K L+I W ISN
Sbjct: 496 LKRKRVNAYNILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKEFKVDPFISNSITEFTLL 554
Query: 7031 RAVVNSNEVDDKKHFEA-----YTNLMAFLVKEG 6945
A++ +D KK+ + +N + FL EG
Sbjct: 555 EALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG 587
Score = 257 bits (656), Expect = 8e-65
Identities = 135/284 (47%), Positives = 178/284 (62%), Gaps = 6/284 (2%)
Frame = -3
Query: 6590 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6411
+I Y D+F C +HG I P+DGNCFF A +TFE VE +RSDFS WL E +
Sbjct: 666 EINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNG 724
Query: 6410 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH----LNDDVFAFGDGCSEGHIFCD 6249
S+ L E+I +GVFME ELIYLF + RG+ +++H ++V+A G EGH+
Sbjct: 725 GSYASLAEMIRPNGVFMEAELIYLFCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHR 784
Query: 6248 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6069
G+HF+ ET+ ++ S L+ I + ++ K+ F F C FRGRKAAF +KV A
Sbjct: 785 GNHFVGIETYNISTLTSDPLLGDIPCGFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDA 844
Query: 6068 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5889
DYGHNGM+YP N W+PSL+EIIQ C +N ALI +YE ++LG HRDNE VY+D I
Sbjct: 845 DYGHNGMVYPHNSWVPSLEEIIQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPI 904
Query: 5888 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGV 5757
LTV G F +E + + F M+ SFF+MPKGFQKKARH V
Sbjct: 905 LTVCTFGEGRFTIEFKDQVTSFLMTAGSFFLMPKGFQKKARHSV 948
>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1213 bits (3138), Expect = 0.0
Identities = 613/988 (62%), Positives = 738/988 (74%), Gaps = 5/988 (0%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
+N CLI A+S+AL + + L + N P+W F+ D G S++DC E L I++++
Sbjct: 1005 RNVCLIRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDL 1064
Query: 5544 HMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKI-S 5368
++ ++ G V + HFS ++E ++ R+ SHL KSN+ GL E + S
Sbjct: 1065 FVDGKCLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQS 1124
Query: 5367 NMSH-YNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIST 5191
MS N + F A E+ R+L SFL TTG+ L LDNG KYF E + I
Sbjct: 1125 EMSTGVNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYFLHMSE--ERPKQIGF 1182
Query: 5190 QLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTFE 5011
+ + GFAGSGKS+ +Q WL K+ FCVVSPRN LA+DW FKL L + KV TFE
Sbjct: 1183 DVTAICGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFE 1242
Query: 5010 SFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDHG 4831
SFIK ++ L++IVLDE+TLFPNGY+D L+Y+L NS ++LLFDPLQARYH++ D
Sbjct: 1243 SFIKMDKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEA 1302
Query: 4830 ILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPED 4657
+L+F+HDVDR++ +++ Y+Y S R++ F R F D+P N+ ET + ++WI+
Sbjct: 1303 VLNFEHDVDRLIGGQDLRYIYSSHRMSKYFNRFF--DVPCFNQAETTKEQRLWILDDVYS 1360
Query: 4656 IRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNEL 4480
I ++ +P DV+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE
Sbjct: 1361 ITSVCIDQGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEF 1420
Query: 4479 RWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFK 4300
RW VA TRAK R+SF + LGG+D+F I +L IL G+ + M++ LI K
Sbjct: 1421 RWMVALTRAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLI-K 1479
Query: 4299 DLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPN 4120
G +DE+DREERLEGDPFLKP+IFLG R++ E + EP CQTHLYI+EPN
Sbjct: 1480 QEKKNGCSDEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPN 1539
Query: 4119 FAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGD 3940
F YNFD IR KE+REYREDMLVT+QFCDSY+K T GP+RFK+IYPKHS D
Sbjct: 1540 FGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSADD 1599
Query: 3939 DMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDF 3760
DMTFWMAVKKRLVFR E+EN +RL+ AHL+GGL+YR+FK L+F +DQGL E VN F
Sbjct: 1600 DMTFWMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAF 1659
Query: 3759 EVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLI 3580
E KKL+KS TI+SHSIRSDVDWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLI
Sbjct: 1660 EKKKLEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLI 1719
Query: 3579 LVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQD 3400
LVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDL WVK FF +DICVESDYEAFD CQD
Sbjct: 1720 LVQFAPWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQD 1779
Query: 3399 EYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAF 3220
EYILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLAN+AF
Sbjct: 1780 EYILSFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAF 1839
Query: 3219 TMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTP 3040
T+CRYEWRRGQPIAFAGDDMCALN+LP+ +DF+++F ISLKAKVERTE PMFCGWRLTP
Sbjct: 1840 TLCRYEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTP 1899
Query: 3039 YGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAV 2860
YGIVKEPELVYNRFQ+AIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAV
Sbjct: 1900 YGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAV 1959
Query: 2859 VRFIVTHIDKLKTKVKDLFQEQSSDEDI 2776
VRFIVTHIDKLKT+VKDLF EQSSDEDI
Sbjct: 1960 VRFIVTHIDKLKTRVKDLFLEQSSDEDI 1987
Score = 484 bits (1247), Expect = e-135
Identities = 237/518 (45%), Positives = 329/518 (63%), Gaps = 22/518 (4%)
Frame = -3
Query: 8552 KKNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSK 8373
+K + +Y AA+ ++SHSE N FA+A+ + KK S +G+EL+PNGY+PHSHP SK
Sbjct: 18 EKKHVDAVYNAAAQTIISHSEFRNKHFAYALTSYQKKIASKVGIELYPNGYMPHSHPLSK 77
Query: 8372 TLENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV--------------------ARQNLS 8253
ENH+L+ VLP V++ + + CSIKE K+ A + S
Sbjct: 78 IFENHILFDVLPDVVSTSKLIMCSIKESKVLIFKNIRDRKKDNGALGFCGKDTSASDHTS 137
Query: 8252 LLNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXX 8073
+N +V +D+ RY E FS D FS+ + + +++ FFHDEVHHW+
Sbjct: 138 FVNRLVAPKDIRRYTEEADAF-FSSKKKNDPELFSNNFIRCISNKEAVFFHDEVHHWTKA 196
Query: 8072 XXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQ 7893
+ RR +F++VYPPELL + NSQNPK+Y FK+ + +LFFFPDGV +E Y+Q
Sbjct: 197 QMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQ 256
Query: 7892 PANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHI 7713
N+ WLF + GD+TWT+ RH S ++HHLFE+ G+LIS+ F++D+ +DM I
Sbjct: 257 KLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYGSIDMSKI 316
Query: 7712 FKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLC 7533
F +RF+ Y++FP+ +H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDVE+KEFLFFEQ C
Sbjct: 317 FLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFC 376
Query: 7532 KRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQ 7353
KR IER TS+G+FG+S F+ L + P+ R WK N F+FL+ LGTL +E++
Sbjct: 377 KRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLGTLVVEIE 436
Query: 7352 RGTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDDGYLERVKLPFFNYKGD 7173
R C+ HILE++ FEVV D + +LDPL F NEN+NEER+DDGYL+RVKLPF+N K
Sbjct: 437 RRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLPFWNLKDY 496
Query: 7172 PRKRETYHFLQQQLHRESPMRASGCKEKEP--TLRICW 7065
KR + ++ R + +E+ P L+I W
Sbjct: 497 DPKRGRANKYDLLCYKFEEERKNDLRERGPHKMLQIEW 534
Score = 239 bits (611), Expect = 2e-59
Identities = 129/291 (44%), Positives = 176/291 (60%), Gaps = 6/291 (2%)
Frame = -3
Query: 6590 QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDP 6411
+I + D+F+ C +HG I P DGNCFF A TF+C ++ ++RS+F+ WL D
Sbjct: 692 EIDFSDIFRPHNCMNTHGYEIPTPMDGNCFFSAFAATFDCPDSK-DLRSNFADWLDTFDG 750
Query: 6410 NSH--LWELIAKDGVFMEHELIYLFAISRGLKIVVH--LND--DVFAFGDGCSEGHIFCD 6249
S+ + I +GVFME ELIYLF I R + +++H ND VFA G EGH+
Sbjct: 751 GSYADMGVKIRPNGVFMEAELIYLFCIYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQR 810
Query: 6248 GHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGA 6069
G HF+ ET+ ++ S + + Y +L + F F C FRGRK AF +KV A
Sbjct: 811 GDHFLGIETYRIDGFASDPNLSELPCGYSEELRNFHFKPEHFNCAQFRGRKGAFLTKVDA 870
Query: 6068 DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEI 5889
DYGHNGM+YP N W+PSLDEII+ CD +N ALI +Y ++LG HRDNE VY+D I
Sbjct: 871 DYGHNGMVYPHNAWVPSLDEIIRICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPI 930
Query: 5888 LTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGVX*KNQYP 5736
LTV G F +E +++ F M+ SFF+MP+GFQ+KARH V +N+ P
Sbjct: 931 LTVCTEGEGFFSIEFKEQTASFLMTAGSFFLMPRGFQRKARHSV--RNELP 979
>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 1212 bits (3137), Expect = 0.0
Identities = 607/989 (61%), Positives = 740/989 (74%), Gaps = 6/989 (0%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
KN CLI A S+A+K +++ + L + N P+W ++ + G S++DC E L +++++
Sbjct: 979 KNTCLIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDL 1038
Query: 5544 HMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKISN 5365
++ ++ G + + HFS + M R+ SHL K NV+ +G E +S
Sbjct: 1039 NVSGKYVVLGKGAFRISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSG 1098
Query: 5364 ---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIS 5194
+ N + F A+ E+ RIL SFL TTG+ LG+ LDNG KYF L + + I
Sbjct: 1099 DVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHI--LKDRVKQIG 1156
Query: 5193 TQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTF 5014
+ + GFAGSGKS+ +Q WL KK FCVVSPR LA+DW FKL L + KV TF
Sbjct: 1157 IDVTMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTF 1216
Query: 5013 ESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDH 4834
E FIK ++ L+LIV+DE+TLFPNGY+D LVY+L N +++LLFDPLQAR+H++ D
Sbjct: 1217 EKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDE 1276
Query: 4833 GILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPE 4660
IL+F+HDVDR+V + + Y+Y + R++ F R F D+P N+ + + ++WI
Sbjct: 1277 SILTFEHDVDRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQADRTEEQRLWIFDDVY 1334
Query: 4659 DIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNE 4483
I +R +P DV+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE
Sbjct: 1335 SIPSICSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNE 1394
Query: 4482 LRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIF 4303
RW VA TR++ R S + LGG+++F + K +L IL GE + + M++ LI
Sbjct: 1395 FRWMVALTRSRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIR 1454
Query: 4302 KDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEP 4123
++ G DE+DREERLEGDPFLKP+IFLGQR+E E E E + EP CQTHLYI+EP
Sbjct: 1455 REKE-NGCRDEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEP 1513
Query: 4122 NFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHG 3943
NF YNFD IR KE+REYREDMLVT+QFCDSY+K T GP+RFK+IYPKHS
Sbjct: 1514 NFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSAD 1573
Query: 3942 DDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVND 3763
DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+ L+F +DQGLLE +N
Sbjct: 1574 DDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINA 1633
Query: 3762 FEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHL 3583
FE KKL+KS TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHL
Sbjct: 1634 FEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHL 1693
Query: 3582 ILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQ 3403
ILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF RDICVESDYEAFDA Q
Sbjct: 1694 ILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQ 1753
Query: 3402 DEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMA 3223
DEYILSFEIHLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMA
Sbjct: 1754 DEYILSFEIHLMKDAHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMA 1813
Query: 3222 FTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLT 3043
FTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F ISLKAKVERTE PMFCGWRLT
Sbjct: 1814 FTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLT 1873
Query: 3042 PYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQA 2863
PYGIVKEPELVYNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQA
Sbjct: 1874 PYGIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQA 1933
Query: 2862 VVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2776
VVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1934 VVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962
Score = 719 bits (1856), Expect = 0.0
Identities = 404/978 (41%), Positives = 556/978 (56%), Gaps = 46/978 (4%)
Frame = -3
Query: 8552 KKNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSK 8373
+K + IY AA+ ++SHSE N FA++++ + KK S +G+EL+PNGYLPHSHP SK
Sbjct: 18 EKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPNGYLPHSHPLSK 77
Query: 8372 TLENHMLYVVLPSVINNDEFLFCSIKEKK-----------------LNCIVARQN--LSL 8250
ENH+L+ VLP V+N + CSIKE K LN + + N S
Sbjct: 78 IFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSLNNSHTSF 137
Query: 8249 LNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXX 8070
+N +V +DVSRY E F + FS K+L +++ FFHDEVHHW+
Sbjct: 138 INRLVASKDVSRYTEE--ADAFFQSKKGGPELFSRNFIKSLENKEAVFFHDEVHHWTKAQ 195
Query: 8069 XXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQP 7890
+ +R +F+VVYPPE+L + NSQNPK+Y FK+ + +LFFFPDGV +E Y+Q
Sbjct: 196 MFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 255
Query: 7889 ANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIF 7710
N+ WLF +L GD WT+ RH S +AHHLFEI G+L+++ F++D++ +DM IF
Sbjct: 256 LNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSIDMSKIF 315
Query: 7709 KNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCK 7530
+RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDVE+KEFLFFEQ CK
Sbjct: 316 LDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 375
Query: 7529 RFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQR 7350
R IER TS+G+FGHS FE L + P++ R WK N F+FL+ LGTL ++V+R
Sbjct: 376 RLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTLVVDVER 435
Query: 7349 GTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDDGYLERVKLPFFNYKGDP 7170
C+ H+LE++ FEVV D + +LDPL F NEN+NE+R+DDGYLER++LPF+N
Sbjct: 436 KVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERIRLPFWNLNDYD 495
Query: 7169 RKRE---TYHFLQQQLHRESPMRASGCKEKEPTLRICW-----------ISNDHRFVRFS 7032
KR+ Y L + E + S K L+I W ISN
Sbjct: 496 LKRKRVNAYDILSYRFEEERKIE-SAQKGPNKMLQIEWYGIKEFKVDPFISNSITEFTLL 554
Query: 7031 RAVVNSNEVDDKKHFEA-----YTNLMAFLVKEGEMYTGAYIEQKFDEFLHPDHYCSNSD 6867
A++ +D KK+ + +N + FL EG G +E+ + L + SD
Sbjct: 555 EALL-GKRIDPKKYSYSKQACTLSNYLTFLCAEG--LDGFNLEEHLERRLKAAGH-DTSD 610
Query: 6866 LEKVEPERDDESGAKR--DKEAEFCNGEEDKIPHHNXXXXXXXXXXXXXXDQCSHGSEKD 6693
E+ E +++G + F N ++IP G
Sbjct: 611 DEEEELTSVEQTGPIKILADPLSFMNECLEEIPIETEPSLE------------ERGQFST 658
Query: 6692 EHNQPLFDHXXXXXXXXXXXXXXEGSGRTTMHFNQIQYKDMFKRTECTASHGGLIDVPAD 6513
+++ F+ I Y D+F C +HG I P+D
Sbjct: 659 DYHSEKFE---------------------------INYNDIFNPHNCMNTHGDEIPTPSD 691
Query: 6512 GNCFFHAIIKTFECVENHVEMRSDFSCWLRERDPNSH--LWELIAKDGVFMEHELIYLFA 6339
GNCFF A +TFE VE +RSDFS WL E + S+ L E+I DG+FME ELIYLF
Sbjct: 692 GNCFFSAFTETFE-VERPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLFC 750
Query: 6338 ISRGLKIVV----HLNDDVFAFGDGCSEGHIFCDGHHFMAYETFALNCKVSFDLIDGIKG 6171
+ RG+ +++ H ++V+A G EGH+ G+HF+ ET+ ++ S L+ I
Sbjct: 751 VFRGVTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIPC 810
Query: 6170 YYEPKLEKYKFIQSDFVCHSFRGRKAAFFSKVGADYGHNGMMYPLNQWIPSLDEIIQTCD 5991
+ ++ K+ F F C FRGRKAAF +KV ADYGHNGM+YP N W+PSLDEIIQ C
Sbjct: 811 GFSEEITKFHFRPDHFNCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICG 870
Query: 5990 PDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNCIFRVEVEKKQIEFEMSD 5811
+N ALI +YE ++LG HRDNE VY+D ILTV G F +E + + F M+
Sbjct: 871 QGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSFLMTA 930
Query: 5810 ASFFIMPKGFQKKARHGV 5757
SFF+MPKGFQKKARH V
Sbjct: 931 GSFFLMPKGFQKKARHSV 948
>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 1206 bits (3119), Expect = 0.0
Identities = 603/989 (60%), Positives = 739/989 (74%), Gaps = 6/989 (0%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
KN LI A S+A+K +++ + L + N P+W ++ + G S++DC E L +++++
Sbjct: 979 KNTRLIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDL 1038
Query: 5544 HMENDIKIMKFGDTLVRIKYSSGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEKISN 5365
++ ++ G + + + HFS + M R+ SHL K +++ +G E +S
Sbjct: 1039 NVNGKCVVLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSG 1098
Query: 5364 ---MSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIS 5194
+ N + F A+ E+ RIL SFL TTG+ LG+ LDNG KYF L + + I
Sbjct: 1099 DVGAAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYFLHI--LKDRVKQIG 1156
Query: 5193 TQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNAKDSGKVCTF 5014
+ + GFAGSGKS+ +Q WL KK FCVVSPR LA+DW FKL L + KV TF
Sbjct: 1157 IDVTVVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTF 1216
Query: 5013 ESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQASNSKAEVVLLFDPLQARYHSESDH 4834
E FIK ++ L+LIV+DE+TLFPNGY+D LVY+L N +++LLFDPLQARYH++ D
Sbjct: 1217 EKFIKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDE 1276
Query: 4833 GILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGET--DSKIWIVTCPE 4660
IL+F+HDVDR+V + + Y+Y + R++ F R F D+P N+ + + ++WI
Sbjct: 1277 SILTFEHDVDRLVGGQSIEYIYSTHRMSRYFNRFF--DVPCFNQADRTEEQRLWIFDDVY 1334
Query: 4659 DIRGGFGERLQP-DVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNE 4483
I +R +P DV+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE
Sbjct: 1335 SIPSICSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNE 1394
Query: 4482 LRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIF 4303
RW VA TR++ R S + LGG+++F + K +L IL GE + + M++ LI
Sbjct: 1395 FRWMVALTRSRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIR 1454
Query: 4302 KDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEP 4123
++ G DE+DREERLEGDPFLKP+IFLGQR+E E E E + EP CQTHLYI+EP
Sbjct: 1455 REKE-NGCRDEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEP 1513
Query: 4122 NFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHG 3943
NF YNFD IR KE+REYREDMLVT+QFCDSY+K T GP+RFK+IYPKHS
Sbjct: 1514 NFGLCYNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKRETPGPLRFKAIYPKHSAD 1573
Query: 3942 DDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVND 3763
DDMTFWMAV+KRLVFR E+EN +RL+ AHL+GGL+Y +FK+ L+F +DQGLLE +N
Sbjct: 1574 DDMTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINA 1633
Query: 3762 FEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHL 3583
FE KKL+KS TI+SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHL
Sbjct: 1634 FEKKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHL 1693
Query: 3582 ILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQ 3403
ILVQFAPWCRYLE QIR+QLPEEIYIHSNKNFDDLN WVKKFF RDICVESDYEAFDA Q
Sbjct: 1694 ILVQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQ 1753
Query: 3402 DEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMA 3223
DEYILSFE+HLMKDA P +IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMA
Sbjct: 1754 DEYILSFEVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMA 1813
Query: 3222 FTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLT 3043
FTMCRYEWRRGQPIAFAGDDMCALN+L + +DF+++F ISLKAKVERTE PMFCGWRLT
Sbjct: 1814 FTMCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLT 1873
Query: 3042 PYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQA 2863
PYGIVKEPEL YNRFQVAIEEGKV+ECLENYAIEVSYAY+LSERLYEVLKSERQ+QYHQA
Sbjct: 1874 PYGIVKEPELAYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQA 1933
Query: 2862 VVRFIVTHIDKLKTKVKDLFQEQSSDEDI 2776
VVRFIVTHIDKLKTKV+DLF EQSSDEDI
Sbjct: 1934 VVRFIVTHIDKLKTKVRDLFLEQSSDEDI 1962
Score = 717 bits (1852), Expect = 0.0
Identities = 403/962 (41%), Positives = 547/962 (56%), Gaps = 30/962 (3%)
Frame = -3
Query: 8552 KKNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSK 8373
+K + IY AA+ ++SHSE N FA++++ + KK S +G+EL+PNGYLPHSHP SK
Sbjct: 18 EKKHVDAIYNAAAQTILSHSEFRNKHFAYSLNSYQKKIASKVGIELYPNGYLPHSHPLSK 77
Query: 8372 TLENHMLYVVLPSVINNDEFLFCSIKEKK-----------------LNCIVARQN--LSL 8250
ENH+L+ VLP V+N + CSIKE K LN + + N S
Sbjct: 78 IFENHLLFDVLPGVVNTSRLVMCSIKESKVLVFKGIRDKSRRQVSDLNALNSLDNSHTSF 137
Query: 8249 LNEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXX 8070
+N +V +DVSRY E F + FS K+L +++ FFHDEVHHW+
Sbjct: 138 INRLVASKDVSRYTEE--ADAFFQSKKGSPELFSRNFIKSLENKEAVFFHDEVHHWTKAQ 195
Query: 8069 XXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQP 7890
+ +R +F+VVYPPE+L + NSQNPK+Y FK+ + +LFFFPDGV +E Y+Q
Sbjct: 196 MFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFPDGVKTEAYEQK 255
Query: 7889 ANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIF 7710
N+ WLF +L GD WT+ RH S +AHHLFEI G+L+++ F++D++ +DM IF
Sbjct: 256 LNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFSDYNSIDMSKIF 315
Query: 7709 KNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCK 7530
+RF+ Y++FP++ +H+YKVYSYLLCLKKPD+ESGLAKLRQIIGDDVE+KEFLFFEQ CK
Sbjct: 316 LDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFEQFCK 375
Query: 7529 RFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQR 7350
R IER TS+G+FGHS FE L + P++ R WK N F+FL+ LGTL ++V+R
Sbjct: 376 RLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLFSLGTLVVDVER 435
Query: 7349 GTCYSHILEQFPFEVVPLDSSVFLDPLPFFETNENWNEERIDDGYLERVKLPFFN---YK 7179
C+ H+LE++ FEVV D + +LDPL F NEN+NE R DDGYLER++LPF+N Y
Sbjct: 436 KVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGYLERIRLPFWNLNDYD 495
Query: 7178 GDPRKRETYHFLQQQLHRESPMRASGCKEKEPTLRICWISNDHRFVRFSRAVVNSNEVDD 6999
R+ Y+ L + E + S K L+I W H F SN + +
Sbjct: 496 LKRRRVNVYNILSYRFEEERRIE-SAQKGPNKMLQIEW----HGIKEFKVDPFISNSITE 550
Query: 6998 KKHFEAYTNLMAFLVKEGEMYTGAYIEQKFDEFLHPDHYCSNSDLEKVEPERDDESGAKR 6819
+T L A L K + +Y +Q + C+ L+ E E K
Sbjct: 551 ------FTLLEALLGKRIDPKKYSYSKQACTLSNYLTFLCAEG-LDGFNLEEHLERRLKA 603
Query: 6818 DKEAEFCNGEEDKIPHHNXXXXXXXXXXXXXXDQCSHGSEKDEHNQPLFDHXXXXXXXXX 6639
+ EE+ +C E +P +
Sbjct: 604 AGHDISDDEEEELTSAEQAGPIKILADPLGFMKECL--EEIPIETEPSLEE--------- 652
Query: 6638 XXXXXEGSGRTTMHFN--QIQYKDMFKRTECTASHGGLIDVPADGNCFFHAIIKTFECVE 6465
G T H +I Y D+F C +HG I P+DGNCFF A +TFE VE
Sbjct: 653 -----RGQFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTPSDGNCFFSAFTETFE-VE 706
Query: 6464 NHVEMRSDFSCWLRERDPNSH--LWELIAKDGVFMEHELIYLFAISRGLKIVV----HLN 6303
+RSDFS WL E + S+ L E+I DGVFME ELIYLF + RG+ +++ H
Sbjct: 707 RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYLFCVFRGVTLIIHDRTHEK 766
Query: 6302 DDVFAFGDGCSEGHIFCDGHHFMAYETFALNCKVSFDLIDGIKGYYEPKLEKYKFIQSDF 6123
++V+A G EGH+ G+HF+ ET+ ++ S L+ I + ++ K++F F
Sbjct: 767 ENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDIPCGFSEEITKFRFRPDHF 826
Query: 6122 VCHSFRGRKAAFFSKVGADYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGG 5943
C FRGRKAAF +KV ADYGHNGM+YP N W+PSLDEIIQ C +N ALI +YE
Sbjct: 827 NCAQFRGRKAAFITKVDADYGHNGMVYPHNSWVPSLDEIIQICGQGDDFNCALINFYEAN 886
Query: 5942 ATLGLHRDNEIVYSDSEILTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARH 5763
++LG HRDNE VY+D ILTV G F +E + + F M+ SFF+MPKGFQKKARH
Sbjct: 887 SSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTSFLMTAGSFFLMPKGFQKKARH 946
Query: 5762 GV 5757
V
Sbjct: 947 SV 948
>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 947 bits (2447), Expect = 0.0
Identities = 464/615 (75%), Positives = 520/615 (84%)
Frame = -2
Query: 4620 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4441
V+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE RW VA TRAK R
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4440 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4261
SF + LGG+DDF I +L IL GE + M++ LI K G +DE+DR
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119
Query: 4260 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4081
EERLEGDPFLKP+IFLGQR+ + + E +EEPRCQTHLYI+EPNF YNFD IR K
Sbjct: 120 EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179
Query: 4080 EEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLV 3901
E+REYREDMLVT+QFCDSY+K T GPMRFK+IYPKHS DDMTFWMAVKKRL+
Sbjct: 180 EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239
Query: 3900 FRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIR 3721
FR E+EN +RL+ AHL+GGL+YR+FK L+F +DQGLLE +N FE KKL+KS+ TI+
Sbjct: 240 FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIK 299
Query: 3720 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLED 3541
SHSIRSD+DWALNDVFLFMKSQLCTK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE
Sbjct: 300 SHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359
Query: 3540 QIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 3361
QIR+QLPEEIY+HSNKNFDDLN WVKKFF RDI VESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360 QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHLMKD 419
Query: 3360 AGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 3181
A P ++IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPI
Sbjct: 420 ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479
Query: 3180 AFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 3001
AFAGDDMCALN+LP+ + F+++F +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480 AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539
Query: 3000 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 2821
FQVAIEEGKVMECLENYAIEVSYAY+LSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540 FQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599
Query: 2820 KVKDLFQEQSSDEDI 2776
KV+DLF EQSSDEDI
Sbjct: 600 KVRDLFLEQSSDEDI 614
>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 945 bits (2443), Expect = 0.0
Identities = 464/615 (75%), Positives = 519/615 (84%)
Frame = -2
Query: 4620 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4441
V+LV+S +EKK + +TFGESQGLTF HVCI+LSES+AASNE RW VA TRAK R
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 4440 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4261
SF + LGG+DDF I +L IL GE + M++ LI K G +DE+DR
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLI-KQEKKNGCSDEVDR 119
Query: 4260 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4081
EERLEGDPFLKP+IFLGQR+ + + E +EEPRCQTHLYI+EPNF YNFD IR K
Sbjct: 120 EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179
Query: 4080 EEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLV 3901
E+REYREDMLVT+QFCDSY+K T GPMRFK+IYPKHS DDMTFWMAVKKRL+
Sbjct: 180 EQREYREDMLVTNQFCDSYDKVHINGKRETPGPMRFKAIYPKHSADDDMTFWMAVKKRLI 239
Query: 3900 FRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIR 3721
FR E+EN +RL+ AHL+GGL+YR+FK L+F +DQGLLE +N FE KKL+KS+ TIR
Sbjct: 240 FREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRGTIR 299
Query: 3720 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLED 3541
SHSIRSD+DWALNDVFLFMKSQL TK+EKQFVDAKAGQTLACFQHLILVQFAPWCRYLE
Sbjct: 300 SHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRYLET 359
Query: 3540 QIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 3361
QIR+QLPEEIY+HSNKNFDDLN WVKKFF RDICVESDYEAFDA QDEYILSFEIHLMKD
Sbjct: 360 QIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHLMKD 419
Query: 3360 AGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 3181
A P ++IDAYIDLKCKL CKLGHF++MRFTGEFCTFLFNTLANMAFT+CRYEWRRGQPI
Sbjct: 420 ANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRGQPI 479
Query: 3180 AFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 3001
AFAGDDMCALN+LP+ + F+++F +SLKAKVERTE PMFCGWRLTPYGIVKEPELVYNR
Sbjct: 480 AFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELVYNR 539
Query: 3000 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 2821
FQVAIEEGKVMECLENYAIEVSYAY+LSE LYEVLKSERQIQYHQAVVRFIVTHIDKLKT
Sbjct: 540 FQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 599
Query: 2820 KVKDLFQEQSSDEDI 2776
KV+DLF EQSSDEDI
Sbjct: 600 KVRDLFLEQSSDEDI 614
>gb|AKN08994.1| replicase [Caucasus prunus virus]
Length = 1986
Score = 900 bits (2325), Expect(2) = 0.0
Identities = 492/999 (49%), Positives = 642/999 (64%), Gaps = 15/999 (1%)
Frame = -2
Query: 5742 ISLPKKKNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECL 5563
+ + K KN CL+ ++S K + ALI NK YW +F+ G +L D N+ AE L
Sbjct: 1000 LGISKFKNICLMRSLSILEKRPLYDILLALIKKNKNYWTSFLEFGVGGTLADLNQAAEDL 1059
Query: 5562 KISLEVHMENDIKIMKFGDTLVRIKYSSGHFS---ELKEFINMPRSSFSHLQGK-SNVSA 5395
E++M + R+ S HFS EL + + +FS + K SN S+
Sbjct: 1060 SFRFELYMNEKWIAGGNRGPIYRLNLSDDHFSVHRELSGNVEDTQLNFSKAKSKQSNFSS 1119
Query: 5394 TKGLVE-KISNMSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVL-DNGAKYFNQSFE 5221
+ + ++ H N F + +LR+SFL RTTG IL + +NGA +
Sbjct: 1120 SDDDNSFDLDSIEHVNKSLFEPLNDAAELLRQSFLNRTTGKILSDAFGENGAHL--RRIR 1177
Query: 5220 LSNLEECISTQLHCLTGFAGSGKSKVMQDWLSKVKKTPFCVVSPRNVLASDWVFKLGLNA 5041
+ ++ +++ GFAGSGKS +Q L K F V+ PR L DW K+ +
Sbjct: 1178 IVKSDDPFPEEVYFSCGFAGSGKSLSLQSKLKSNFKLKFLVICPRVELKEDWERKVKCS- 1236
Query: 5040 KDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLVYDLQAS-NSKAEVVLLFDPL 4864
S KVCTFE + + +ELIV+DE+ LFP GY+D +++ L+ N K +V+LLFDPL
Sbjct: 1237 --SHKVCTFEVALLQNLSRVELIVIDELGLFPRGYLDLMIFKLRTEKNFKGKVMLLFDPL 1294
Query: 4863 QARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSFFRRFNSDLPMLNRGETDSK 4684
QARYHS+SD L H+ DR+ ++NYL+ S+RL+ FF F D+ + N G + +
Sbjct: 1295 QARYHSDSDERFLHEIHECDRITSGAKINYLFESWRLSKKFFGNFFVDIELRNSGSVNYE 1354
Query: 4683 I-----WIVTCPEDIRGGFGERLQPDVILVDSQVEKKMYESQFRTLTFGESQGLTFGHVC 4519
+ IV E + GF D+ILV S+ EK + + LTFGE+QGLT H C
Sbjct: 1355 LDFFDNHIVAANEAKKRGF----PIDLILVASRDEKNSFAGKVNVLTFGEAQGLTVKHSC 1410
Query: 4518 IVLSESTAASNELRWNVAWTRAKERVSFLVSHLGGLDDFLINCKANLPKKILNGETLDHS 4339
IVLSE ++ RW VA TRAKE++SF+ SH GL F+ + L G +
Sbjct: 1411 IVLSEYAEKQDDYRWVVALTRAKEKISFITSHRSGLTGFMSSMIGRPIHAFLTGLPFTSN 1470
Query: 4338 FYRKMIRSKLIFKDLTIGGSTDEMDREERLEGDPFLKPYIFLGQRLEMRE---IEPETFT 4168
M+ +L+ GG DE+DRE+RLEGDPFLKP++FLGQR+ E IEPE
Sbjct: 1471 RMNWMVNCELVECHRATGGR-DEVDREDRLEGDPFLKPFVFLGQRINSEEYEIIEPEVI- 1528
Query: 4167 LEEPRCQTHLYISEPNFAQAYNFDLIRLKEEREYREDMLVTDQFCDSYNKRGPKCNDTTV 3988
EP+ + HL IS+ N+A A NFDLIR KE RE + L T+QFC YN+ G + +
Sbjct: 1529 --EPKGRVHLCISQENYALARNFDLIRAKEYREAKLMGLETNQFCHDYNRVGAQGSRHVA 1586
Query: 3987 GPMRFKSIYPKHSHGDDMTFWMAVKKRLVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDL 3808
P+RF+SI+P+H DD+TFWMAVKKRL F E R +L D++ +G L+Y++ K L
Sbjct: 1587 SPLRFESIFPRHRSDDDLTFWMAVKKRLRFSEEFLERAKLKDSYSVGNLLYQNLKEKLSL 1646
Query: 3807 KFVYDQGLLERCVNDFEVKKLKKSQATIRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 3628
F +DQGLL+ C+NDFE KKL KS+AT+ +HSIRSD+DW+++ +FLFMKSQLCTK+EKQ+
Sbjct: 1647 SFSWDQGLLDECLNDFETKKLLKSKATLANHSIRSDIDWSMDKIFLFMKSQLCTKYEKQY 1706
Query: 3627 VDAKAGQTLACFQHLILVQFAPWCRYLEDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMR 3448
VDAKAGQTLACF HL+L +FAP+CRY+E +R L EEIYIHSNKNF+DLN+WV KFF
Sbjct: 1707 VDAKAGQTLACFSHLVLAKFAPYCRYMEKMLRRNLKEEIYIHSNKNFNDLNDWVVKFFEE 1766
Query: 3447 DICVESDYEAFDACQDEYILSFEIHLMKDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFT 3268
VESDYEAFDA QD Y+L+FE+ +M+D GLP+ I+ YIDLKC L CKLGHFA+MRFT
Sbjct: 1767 GEKVESDYEAFDASQDHYVLAFEVCVMEDMGLPNWFINDYIDLKCTLGCKLGHFAIMRFT 1826
Query: 3267 GEFCTFLFNTLANMAFTMCRYEWRRGQPIAFAGDDMCALNDLPLRYDFEEVFNKISLKAK 3088
GEF TFLFNTLANMAFT RYE PIAFAGDDMC L + FE+V +K+SLKAK
Sbjct: 1827 GEFSTFLFNTLANMAFTFARYECDHKTPIAFAGDDMCMLKACKVSDKFEDVLSKLSLKAK 1886
Query: 3087 VERTERPMFCGWRLTPYGIVKEPELVYNRFQVAIEEGKVMECLENYAIEVSYAYNLSERL 2908
V RTE PMFCGW L+ YGIVKEPELV+NRF VA + G + ECLENYAIEVSYAY+L E+L
Sbjct: 1887 VIRTEMPMFCGWNLSRYGIVKEPELVFNRFMVAKKRGNIDECLENYAIEVSYAYSLGEKL 1946
Query: 2907 YEVLKSERQIQYHQAVVRFIVTHIDKLKTKVKDLFQEQS 2791
YEVLK E Q++YHQAVVRFIV +DKLKTKVKDLF +Q+
Sbjct: 1947 YEVLKREEQVEYHQAVVRFIVQRLDKLKTKVKDLFSDQN 1985
Score = 95.9 bits (237), Expect(2) = 0.0
Identities = 49/119 (41%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Frame = -3
Query: 6107 RGRKAAFFSKVGA-DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLG 5931
+ R A FFS+ + DYGHN + Y N W +D+++ + YN+ LIQ Y+ G ++G
Sbjct: 858 KNRDAFFFSESKSIDYGHNRIKYAHNHW-NGVDQLLPS-SLRNDYNAMLIQVYKEGGSIG 915
Query: 5930 LHRDNEIVYSDSEILTVNLSGNCIFRVEVE-KKQIEFEMSDASFFIMPKGFQKKARHGV 5757
+HRDNE VY + IL++NL+G+ +F++E + K+ F M D +F+M + FQ K RHGV
Sbjct: 916 MHRDNEKVYDNDSILSINLNGDALFQIEAKSSKRYSFRMKDGDYFLMKRDFQAKFRHGV 974
Score = 282 bits (722), Expect = 1e-72
Identities = 151/405 (37%), Positives = 228/405 (56%), Gaps = 6/405 (1%)
Frame = -3
Query: 8549 KNDIKRIYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSKT 8370
KND + I + + FA+ ++ K+ L+++GV L P +L HSHPF KT
Sbjct: 19 KNDQRSILTSGVNFVKKFCDDKGIHFAYYVNDRKKEALTNLGVTLHPIPFLTHSHPFCKT 78
Query: 8369 LENHMLYVVLPSVINNDEFLFCSIKEKKLNCIV-----ARQNLSLLNEIVEGRDVSRYKE 8205
LENH+L VLP+++ N ++F S+K+ K+N ++ N+ ++N + +D RY
Sbjct: 79 LENHLLINVLPNLLGNGHWVFTSVKKAKVNSVIKLAGGVSNNVDIVNRCICAKDFGRYDF 138
Query: 8204 VDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVF 8025
+ N ++ F +++ K+K F HDEVHHWS L+
Sbjct: 139 EPGSVDQKINILSKDHLFPKNFIRSVRKKK-IFIHDEVHHWSHLNMIQFLEETATPLLLC 197
Query: 8024 SVVYPPELLGGYNNSQNPKMYTFKIVRDQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDG 7845
SVV+PPELLGG QN +Y F++ D+LFFFPDG SE Y+QP+NL WLF+ Y+
Sbjct: 198 SVVFPPELLGGIKTPQNSALYGFQVDGDKLFFFPDGSRSEMYEQPSNLNWLFEASYIHTS 257
Query: 7844 DRTWTIVRHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQ 7665
T+T+ S +AHHLF+I G+ I++ V F+ DF+ +DM I K RFK YDL P+
Sbjct: 258 AGTYTVKMVGSFYAHHLFQISKGEKITDSVRFFADFNTIDMSVIHKERFKYYDLIPIKKS 317
Query: 7664 HVYKVYSYLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCKRFI-ERGTSFGMFGH 7488
H+ K+Y+YLLCLKKPDVES +AKLRQ++ D+ + + FF K+ I + + +FG
Sbjct: 318 HIEKIYTYLLCLKKPDVESAIAKLRQLMEDEQDCRVVEFFCTFAKKLITDTKGAINLFGD 377
Query: 7487 SLFETLFLKFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEVQ 7353
S + F+ P++ W NIF FL+ L T+ ++V+
Sbjct: 378 SFLQKAKDSFIMALPNSIASCFDRWHGLNIFHFLFTLDTIRVKVE 422
>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
virus] gi|571026291|emb|CDF66416.2|
replication-associated polyprotein [Apricot vein clearing
associated virus]
Length = 1679
Score = 863 bits (2229), Expect = 0.0
Identities = 471/1033 (45%), Positives = 630/1033 (60%), Gaps = 52/1033 (5%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
KNKC+I AV+ AL T V ++ A +P L + DD + + + +
Sbjct: 657 KNKCIIHAVAMALGQTSNTVANKIV-AQRPDLLQCLVDDEMLDKQTTETICVIMNLHATI 715
Query: 5544 HMENDIKIMKFG-DTLVRIKYS--SGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEK 5374
E++ + M+ + L++ +S H L + N + +++ +
Sbjct: 716 VNEDEGETMELNPEGLIKSSFSVLDEHMMVLSDIPNCRSKKGIDICMSPDLANSNCAANY 775
Query: 5373 ISNMSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIS 5194
+ ++ + A E L SFL TTG +L E++ G+++F ++ +
Sbjct: 776 EVTCQNLQVIQYQADHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFV 835
Query: 5193 TQLHCLTGFAGSGKSKVMQDWLSKVKKT-----------------------------PFC 5101
+L + GFAGSGKS + + + ++ + C
Sbjct: 836 EELSFVPGFAGSGKSLGLLNEVKRISREIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMC 895
Query: 5100 VVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLV 4921
++SPR LA DW KLG +A + V TFE K ++LIV+DE+TLFPNGYID L+
Sbjct: 896 IISPRRNLADDWETKLGPSALEHCSVTTFEVLFKASISKIKLIVVDELTLFPNGYIDLLI 955
Query: 4920 YDLQASNSKAEVVLLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSF 4741
+ ++ + +++L+FDPLQARY S D IL +HDVD ++ D EV+Y+Y S R
Sbjct: 956 FRIRTESPDCKLILIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEE 1015
Query: 4740 FRRFNSDLPMLNRGETDSKIWIVTCPEDIRGGFGERLQP--------------------D 4621
DL + E D+ E G G + +P D
Sbjct: 1016 LFNLFEDL---KKNEVDA--------ESRETGKGAKFRPRMYTNLLTMKVEEENQGNPID 1064
Query: 4620 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4441
V+LV S E ++ S +T+TFGESQGLT H I+LSE++A S++ RW VA TRA+++V
Sbjct: 1065 VLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAILLSENSALSDDHRWLVALTRARKKV 1124
Query: 4440 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4261
+FL HL GL+ FL + L ++N + M+R+KL + DE+DR
Sbjct: 1125 TFLCLHLSGLNGFLSTMENRLVAAVINKGLVTKKRLSSMVRAKLNYVKFKGLAGKDEVDR 1184
Query: 4260 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4081
E+RLEGD FLK IFLGQR E+ E E + + +TH ++ + NFAQ YNFD IR K
Sbjct: 1185 EDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVMAKEDMKTHFFVCQENFAQCYNFDNIRAK 1244
Query: 4080 EEREYREDMLVTDQFCDSYNKRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKRLV 3901
E RE+R VT+QF D+Y T GP+RF++IYP+H DD+TF MAV KRL
Sbjct: 1245 ELREFRIGHRVTNQFIDNYEIVQHVQKKHTAGPLRFEAIYPRHCADDDVTFLMAVHKRLR 1304
Query: 3900 FRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQATIR 3721
F +E + R +L AH G +++ + + L F +D L E CVNDFE KKL+KS+A +
Sbjct: 1305 FSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTWDNQLFEECVNDFECKKLEKSKAVLA 1364
Query: 3720 SHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYLED 3541
+HSIRSD DW+ N VFLFMKSQLCTK+EKQ+VDAKAGQTLACFQH+ILV FAP+CRY+E
Sbjct: 1365 NHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAKAGQTLACFQHMILVTFAPYCRYMEK 1424
Query: 3540 QIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLMKD 3361
Q+R+QLP EIYIHSNKNF+DLN WVKK D+CVESDYEAFDA QD+YILSFE+ +M+
Sbjct: 1425 QLRAQLPGEIYIHSNKNFNDLNEWVKKHAGDDLCVESDYEAFDASQDQYILSFELFMMRH 1484
Query: 3360 AGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQPI 3181
+P+ +I AYIDLK L CKLGHFA+MRFTGEF TFLFNTLANMAFTMCRYEW G PI
Sbjct: 1485 MHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTMCRYEWNSGDPI 1544
Query: 3180 AFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVYNR 3001
AFAGDDMCAL +L + F VF KISLKAK + TE PMFCGWRL+ +GIVKEPELVYNR
Sbjct: 1545 AFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQITEVPMFCGWRLSRFGIVKEPELVYNR 1604
Query: 3000 FQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKLKT 2821
F VA+E G V +CLENYAIEVSYAY+L ERL+++LK E Q++YHQAVVRFIV H+ L+T
Sbjct: 1605 FMVALERGNVKDCLENYAIEVSYAYSLGERLFDILKREEQLEYHQAVVRFIVKHLGNLRT 1664
Query: 2820 KVKDLFQEQSSDE 2782
KVKDLF EQS+++
Sbjct: 1665 KVKDLFAEQSNED 1677
Score = 270 bits (689), Expect = 7e-69
Identities = 149/366 (40%), Positives = 210/366 (57%), Gaps = 8/366 (2%)
Frame = -3
Query: 8447 KKKLSSI----GVELFPNGYLPHSHPFSKTLENHMLYVVLPSVINNDEFLFCSIKEKKLN 8280
+KK++SI GV L P YL HSHPFSK LENH+L VLP I ++F SIK K+
Sbjct: 51 QKKVASIRGWLGVPLHPTPYLAHSHPFSKMLENHILLNVLPGHITGS-WVFSSIKPSKVE 109
Query: 8279 CIVARQNLSLL---NEIVEGRDVSRYKEVDFVHNFSFNSNLDNYRFSSQAFKTLGKRKSF 8109
+ + S+L N ++ +D RY +VD + + + + + F K ++
Sbjct: 110 SLATKGKKSVLKTINRLLCAKDFGRY-DVDTDSSVIRSISREAPDILPEPFVRAVKGRNV 168
Query: 8108 FFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPELLGGYNNSQNPKMYTFKIVR-DQLF 7932
HDEVHHW+ P R VFSVVYP ELL G SQNPKMY F+ + D++
Sbjct: 169 MIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQDSKSDKIV 228
Query: 7931 FFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIVRHASKFAHHLFEIVPGKLISEDVH 7752
FFPDG SEGY+Q ANL WLF + WT+ R S ++HHLFE+VPG ++++
Sbjct: 229 FFPDGRASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGNYFTDEIR 288
Query: 7751 FYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYSYLLCLKKPDVESGLAKLRQIIGDD 7572
F+NDF+ +D+ IFK+RF D P++ V +VYSYL+CLKKPD++S +AKL+Q++GDD
Sbjct: 289 FFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKLKQLMGDD 348
Query: 7571 VEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFLKFVKLCPDTFVRWTKTWKCSNIFD 7392
++V+ +FF L R + F +F S+ KF+ PD + TWK N
Sbjct: 349 LDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTWKSGN--- 405
Query: 7391 FLYDLG 7374
F+ LG
Sbjct: 406 FIKKLG 411
Score = 75.9 bits (185), Expect = 1e-09
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = -3
Query: 6113 SFRGRKAAFFSKVGA-DYGHNGMMYPLNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGAT 5937
SFRGR + FF++ DYGHNG Y W LD+ I + D +N+ L+Q Y+ G+
Sbjct: 510 SFRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIPS---DLIFNACLVQVYDKGSK 566
Query: 5936 LGLHRDNEIVYSDSEILTVNLSGNCIFRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGV 5757
+G H+DNE Y+ ILTVN G +F + + F ++D ++ + +K RH V
Sbjct: 567 IGFHKDNEQCYAGYPILTVNF-GLALFEFDSGE---AFNLTDGDTILLSGDYLRKKRHRV 622
>gb|AKN09002.1| replicase [Apricot vein clearing associated virus]
Length = 2021
Score = 865 bits (2236), Expect(2) = 0.0
Identities = 478/1036 (46%), Positives = 636/1036 (61%), Gaps = 54/1036 (5%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
KNKC+I AV+ AL T V ++ A +P L + DD + + + +
Sbjct: 999 KNKCIIHAVAMALGQTSNTVANKIV-AQRPDLLQCLVDDEMLDKQTTEAICVIMNLHATI 1057
Query: 5544 HMENDIKIMKFG-DTLVRIKYS--SGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEK 5374
E++ + M+ + L++ +S H L + N + +++ + V
Sbjct: 1058 VNEDEGETMELNPEGLIKSSFSVLDEHMMVLSDVPNCMSKKGIDICMSPDLANSNCAVNY 1117
Query: 5373 ISNMSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIS 5194
+ ++ + A E L SFL TTG +L E++ G+++F ++ +
Sbjct: 1118 EVTCQNLQVIQYQADHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFV 1177
Query: 5193 TQLHCLTGFAGSGKSKVMQDWLSKVKKT-----------------------------PFC 5101
+L + GFAGSGKS + + + ++ + C
Sbjct: 1178 EELSFVPGFAGSGKSLGLLNEVKRISREIHLAKEKKRMGKGDGKGHEKKERNRGNLKSMC 1237
Query: 5100 VVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLV 4921
++SPR LA DW KLG +A + V TFE F K ++LIV+DE+TLFPNGYID L+
Sbjct: 1238 IISPRRNLADDWETKLGPSALEHCSVTTFEVFFKASISKIKLIVVDELTLFPNGYIDLLI 1297
Query: 4920 YDLQASNSKAEVVLLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSF 4741
+ ++ + +++L+FDPLQARY S D IL +HDVD ++ D EV+Y+Y S R
Sbjct: 1298 FRIRTESPNCKLILIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEE 1357
Query: 4740 FRRFNSDLPMLNRGETDSKIWIVTCPEDIRGGFGERLQP--------------------D 4621
DL R E D+ E G G + +P D
Sbjct: 1358 LFNLFEDL---KRNEVDA--------ESQETGKGAKFRPRMYTNLLTMKVEEENQGNPID 1406
Query: 4620 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4441
V+LV S E ++ S +T+TFGESQGLT H I+LSE++A S++ RW VA TRA+++V
Sbjct: 1407 VLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAILLSENSALSDDHRWLVALTRARKKV 1466
Query: 4440 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4261
+FL HL GL+ FL + L ++N + M+R+KL + DE+DR
Sbjct: 1467 TFLCLHLSGLNGFLSTMENRLVAAVINKGLITKKRLSSMVRAKLNYVKFKGLAGKDEVDR 1526
Query: 4260 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4081
E+RLEGD FLK IFLGQR E+ E E + + +TH ++ + NFAQ YNFD IR K
Sbjct: 1527 EDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVIAKEDMKTHFFVCQENFAQCYNFDNIRAK 1586
Query: 4080 EEREYREDMLVTDQFCDSYN--KRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKR 3907
E RE+R VT+QF D+Y + G K + T GP+RF++IYP+H DD+TF MAV KR
Sbjct: 1587 ELREFRIGHRVTNQFIDNYEIVQHGQKKH--TAGPLRFEAIYPRHCADDDVTFLMAVHKR 1644
Query: 3906 LVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQAT 3727
L F +E + R +L AH G +++ + + L F +D L E CVNDFE KKL+KS+A
Sbjct: 1645 LRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTWDNQLFEECVNDFECKKLEKSKAV 1704
Query: 3726 IRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYL 3547
+ +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+VDAKAGQTLACFQH+ILV FAP+CRY+
Sbjct: 1705 LANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAKAGQTLACFQHMILVTFAPYCRYM 1764
Query: 3546 EDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLM 3367
E Q+R+QLP EIYIHSNKNF+DLN WVKK+ D+CVESDYEAFDA QD+YILSFE+ +M
Sbjct: 1765 EKQLRAQLPGEIYIHSNKNFNDLNEWVKKYAGDDLCVESDYEAFDASQDQYILSFELFMM 1824
Query: 3366 KDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQ 3187
+ +P+ +I AYIDLK L CKLGHFA+MRFTGEF TFLFNTLANMAFTM RYEW G
Sbjct: 1825 RHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTMRRYEWNSGD 1884
Query: 3186 PIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVY 3007
PIAFAGDDMCAL +L + F VF KISLKAK + TE PMFCGWRL+ +GIVKEPELVY
Sbjct: 1885 PIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQITEVPMFCGWRLSKFGIVKEPELVY 1944
Query: 3006 NRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKL 2827
NRF VA+E G V +CLENYAIEVSYAY+L ERL+++LK E Q++YHQAVVRFIV H+ L
Sbjct: 1945 NRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDILKREEQLEYHQAVVRFIVKHLGDL 2004
Query: 2826 KTKVKDLFQEQSSDED 2779
+TKVKDLF EQ SDED
Sbjct: 2005 RTKVKDLFAEQ-SDED 2019
Score = 88.2 bits (217), Expect(2) = 0.0
Identities = 76/274 (27%), Positives = 119/274 (43%), Gaps = 15/274 (5%)
Frame = -3
Query: 6533 LIDVPADGNCFFHAIIKTF---ECVENHVEMRSDFSCWLRERDPNSHLWELIAKDGVFME 6363
+I ADG CFFH ++ T V N V +F ++ N H ++G + E
Sbjct: 714 IIRASADGRCFFHTLLSTSLFGGSVNNLVNTFCNFI-----KNLNEHEAARQVQEGAYPE 768
Query: 6362 HELIYLFAISRGLKIVVHLNDDVFAFGDGCSEGHIFCDGHHFMAYETFALNCKVSFD--- 6192
+I LF + G+++ H + + S FC +L + FD
Sbjct: 769 GWMINLFLANYGIRMCCHQHSADGVTIETGSGPISFC-----------SLKMENHFDYLR 817
Query: 6191 -LIDGIKGYYEPKLEKYKFIQSDFVC-------HSFRGRKAAFFSKVGA-DYGHNGMMYP 6039
L G+ + L K + + SFRGR + FF++ DYGHNG Y
Sbjct: 818 CLSSGVSKEHTGLLGKTTYPSGPIINALQGLKPKSFRGRSSFFFARSNEIDYGHNGFKYR 877
Query: 6038 LNQWIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNCI 5859
W LD+ I + D +N+ L+Q Y+ G+ +G H+DNE Y+ ILTVN G +
Sbjct: 878 TENWFAELDDFIPS---DLIFNACLVQVYDKGSKIGFHKDNEQCYAGYPILTVNF-GLAL 933
Query: 5858 FRVEVEKKQIEFEMSDASFFIMPKGFQKKARHGV 5757
F + + F ++D ++ + KK RH V
Sbjct: 934 FEFDSGE---AFNLTDGDTILLSGDYLKKKRHRV 964
Score = 301 bits (772), Expect = 2e-78
Identities = 163/396 (41%), Positives = 228/396 (57%), Gaps = 4/396 (1%)
Frame = -3
Query: 8531 IYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSKTLENHML 8352
I A ++L +LN FA+ + LK+KLSS+GV L P YL HSHPFSK LENH+L
Sbjct: 26 IISSAYKSLKQQLDLNGGHFAYEVSASLKEKLSSLGVPLHPTPYLAHSHPFSKMLENHIL 85
Query: 8351 YVVLPSVINNDEFLFCSIKEKKLNCIVARQNLSLL---NEIVEGRDVSRYKEVDFVHNFS 8181
VLP I ++F SIK K+ + + S+L N ++ +D RY +VD +
Sbjct: 86 LNVLPGHITGS-WVFSSIKPSKVESLATKGKKSVLRTVNRLLCAKDFGRY-DVDTDSSVI 143
Query: 8180 FNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPEL 8001
+ + + + F K ++ HDEVHHW+ P R VFSVVYP EL
Sbjct: 144 RSISREAPDILPEPFIRAVKGRNVMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVEL 203
Query: 8000 LGGYNNSQNPKMYTFKIVR-DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIV 7824
L G SQNPKMY F+ + D++ FFPDG SEGY+Q ANL WLF + WT+
Sbjct: 204 LAGIPESQNPKMYKFQDSKSDKIVFFPDGKASEGYEQRANLRWLFCASHFRTSGSIWTVK 263
Query: 7823 RHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYS 7644
R S ++HHLFE+VPG ++++ F+NDF+ +D+ IFK+RF D P++ V +VYS
Sbjct: 264 RIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYS 323
Query: 7643 YLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFL 7464
YL+CLKKPD++S +AKL+Q++GDD++V+ +FF L R + F +F S+
Sbjct: 324 YLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKK 383
Query: 7463 KFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEV 7356
KF+ PD + TWK N FDFL L L +EV
Sbjct: 384 KFLDFAPDWLLHGFMTWKSGNFFDFLMSLKILQVEV 419
>gb|AKN08998.1| replicase [Apricot vein clearing associated virus]
Length = 2021
Score = 863 bits (2231), Expect = 0.0
Identities = 477/1036 (46%), Positives = 635/1036 (61%), Gaps = 54/1036 (5%)
Frame = -2
Query: 5724 KNKCLISAVSQALKSTEEKVCQALISANKPYWLNFIRDDTGASLDDCNELAECLKISLEV 5545
KNKC+I AV+ AL T V ++ A +P L + DD + + + +
Sbjct: 999 KNKCIIHAVAMALGQTSNTVANKIV-AQRPDLLQCLVDDEMLDKQTTETICVIMNLHATI 1057
Query: 5544 HMENDIKIMKFG-DTLVRIKYS--SGHFSELKEFINMPRSSFSHLQGKSNVSATKGLVEK 5374
E++ + M+ + L++ +S H L + N + +++ +
Sbjct: 1058 VNEDEGETMELNPEGLIKSSFSVLDEHMMVLSDVPNCRSKKGIDICMSPDLANSNCAANY 1117
Query: 5373 ISNMSHYNLLPFNASGEYLRILRKSFLQRTTGVILGEVLDNGAKYFNQSFELSNLEECIS 5194
+ ++ + A E L SFL TTG +L E++ G+++F ++ +
Sbjct: 1118 EVTCQNLQVIQYQADHERAIKLMNSFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFV 1177
Query: 5193 TQLHCLTGFAGSGKSKVMQDWLSKVKKT-----------------------------PFC 5101
+L + GFAGSGKS + + + ++ + C
Sbjct: 1178 EELSFVPGFAGSGKSLGLLNEVKRISREIHLAKEKKRMGKGNGKGHEKKERNRGNLKSMC 1237
Query: 5100 VVSPRNVLASDWVFKLGLNAKDSGKVCTFESFIKRERKNLELIVLDEVTLFPNGYIDWLV 4921
++SPR LA DW KLG +A + V TFE F K ++LIV+DE+TLFPNGYID L+
Sbjct: 1238 IISPRRNLADDWETKLGPSALEHCSVTTFEVFFKASISKIKLIVVDELTLFPNGYIDLLI 1297
Query: 4920 YDLQASNSKAEVVLLFDPLQARYHSESDHGILSFDHDVDRMVCDREVNYLYGSFRLNGSF 4741
+ ++ + +++L+FDPLQARY S D IL +HDVD ++ D EV+Y+Y S R
Sbjct: 1298 FRIRTESPDCKLILIFDPLQARYDSAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEE 1357
Query: 4740 FRRFNSDLPMLNRGETDSKIWIVTCPEDIRGGFGERLQP--------------------D 4621
DL + E D+ E G G + +P D
Sbjct: 1358 LFNLFEDL---KKDEVDA--------ESRETGKGAKFRPRMYTNLLTMKVEEENQGNPID 1406
Query: 4620 VILVDSQVEKKMYESQFRTLTFGESQGLTFGHVCIVLSESTAASNELRWNVAWTRAKERV 4441
V+LV S E ++ S +T+TFGESQGLT H I+LSE++A S++ RW VA TRA+++V
Sbjct: 1407 VLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAILLSENSALSDDHRWLVALTRARKKV 1466
Query: 4440 SFLVSHLGGLDDFLINCKANLPKKILNGETLDHSFYRKMIRSKLIFKDLTIGGSTDEMDR 4261
+FL HL GL+ FL + L ++N + M+R+KL + DE+DR
Sbjct: 1467 TFLCLHLSGLNGFLSTMENRLIAAVINKGLVTKKRLSSMVRAKLNYVKFKGLAGKDEVDR 1526
Query: 4260 EERLEGDPFLKPYIFLGQRLEMREIEPETFTLEEPRCQTHLYISEPNFAQAYNFDLIRLK 4081
E+RLEGD FLK IFLGQR E+ E E + + +TH ++ + NFAQ YNFD IR K
Sbjct: 1527 EDRLEGDLFLKGVIFLGQRCEIVEPEIVEPVMAKEDMKTHFFVCQENFAQCYNFDNIRAK 1586
Query: 4080 EEREYREDMLVTDQFCDSYN--KRGPKCNDTTVGPMRFKSIYPKHSHGDDMTFWMAVKKR 3907
E RE+R VT+QF D+Y + G K + T GP+RF++IYP+H DD+TF MAV KR
Sbjct: 1587 ELREFRIGHRVTNQFIDNYEIVQHGQKKH--TAGPLRFEAIYPRHCADDDVTFLMAVHKR 1644
Query: 3906 LVFRSEDENRRRLNDAHLIGGLIYRHFKRTFDLKFVYDQGLLERCVNDFEVKKLKKSQAT 3727
L F +E + R +L AH G +++ + + L F +D L E CVNDFE KKL+KS+A
Sbjct: 1645 LRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTWDNQLFEECVNDFECKKLEKSKAV 1704
Query: 3726 IRSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFVDAKAGQTLACFQHLILVQFAPWCRYL 3547
+ +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+VDAKAGQTLACFQH+ILV FAP+CRY+
Sbjct: 1705 LANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAKAGQTLACFQHMILVTFAPYCRYM 1764
Query: 3546 EDQIRSQLPEEIYIHSNKNFDDLNNWVKKFFMRDICVESDYEAFDACQDEYILSFEIHLM 3367
E Q+R+QLP EIYIHSNKNF+DLN WVKK D+CVESDYEAFDA QD+YILSFE+ +M
Sbjct: 1765 EKQLRAQLPGEIYIHSNKNFNDLNEWVKKHAGDDLCVESDYEAFDASQDQYILSFELFMM 1824
Query: 3366 KDAGLPDSLIDAYIDLKCKLSCKLGHFAVMRFTGEFCTFLFNTLANMAFTMCRYEWRRGQ 3187
+ +P+ +I AYIDLK L CKLGHFA+MRFTGEF TFLFNTLANMAFTMCRYEW G
Sbjct: 1825 RHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFSTFLFNTLANMAFTMCRYEWNSGD 1884
Query: 3186 PIAFAGDDMCALNDLPLRYDFEEVFNKISLKAKVERTERPMFCGWRLTPYGIVKEPELVY 3007
PIAFAGDDMCAL +L + F VF KISLKAK + TE PMFCGWRL+ +GIVKEPELVY
Sbjct: 1885 PIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQVTEVPMFCGWRLSRFGIVKEPELVY 1944
Query: 3006 NRFQVAIEEGKVMECLENYAIEVSYAYNLSERLYEVLKSERQIQYHQAVVRFIVTHIDKL 2827
NRF VA+E G V +CLENYAIEVSYAY+L ERL+++LK E Q++YHQAVVRFIV H+ L
Sbjct: 1945 NRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDILKREEQLEYHQAVVRFIVKHLGNL 2004
Query: 2826 KTKVKDLFQEQSSDED 2779
+TKVKDLF EQ SDED
Sbjct: 2005 RTKVKDLFAEQ-SDED 2019
Score = 301 bits (771), Expect = 2e-78
Identities = 163/396 (41%), Positives = 228/396 (57%), Gaps = 4/396 (1%)
Frame = -3
Query: 8531 IYKPAAEALVSHSELNNSLFAFAMDPFLKKKLSSIGVELFPNGYLPHSHPFSKTLENHML 8352
I A ++L +LN FA+ + LK+KLSS+GV L P YL HSHPFSK LENH+L
Sbjct: 26 IISSAYKSLKQQLDLNGGHFAYEVSASLKEKLSSLGVPLHPTPYLAHSHPFSKMLENHIL 85
Query: 8351 YVVLPSVINNDEFLFCSIKEKKLNCIVARQNLSLL---NEIVEGRDVSRYKEVDFVHNFS 8181
VLP I ++F SIK K+ + + S+L N ++ +D RY +VD +
Sbjct: 86 LNVLPGHITGS-WVFSSIKPSKVESLATKGKKSVLKTVNRLLCAKDFGRY-DVDTDSSVI 143
Query: 8180 FNSNLDNYRFSSQAFKTLGKRKSFFFHDEVHHWSXXXXXXXXXXFEPRRLVFSVVYPPEL 8001
+ + + + F K ++ HDEVHHW+ P R VFSVVYP EL
Sbjct: 144 RSISREAPDILPEPFIRAVKGRNVMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVEL 203
Query: 8000 LGGYNNSQNPKMYTFKIVR-DQLFFFPDGVTSEGYQQPANLFWLFKNKYLVDGDRTWTIV 7824
L G SQNPKMY F+ + D++ FFPDG SEGY+Q ANL WLF + WT+
Sbjct: 204 LAGILESQNPKMYKFQDSKSDKIVFFPDGKASEGYEQRANLRWLFCASHFRTSGSIWTVK 263
Query: 7823 RHASKFAHHLFEIVPGKLISEDVHFYNDFDVVDMHHIFKNRFKRYDLFPVNYQHVYKVYS 7644
R S ++HHLFE+VPG ++++ F+NDF+ +D+ IFK+RF D P++ V +VYS
Sbjct: 264 RIYSAYSHHLFEVVPGNYFTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYS 323
Query: 7643 YLLCLKKPDVESGLAKLRQIIGDDVEVKEFLFFEQLCKRFIERGTSFGMFGHSLFETLFL 7464
YL+CLKKPD++S +AKL+Q++GDD++V+ +FF L R + F +F S+
Sbjct: 324 YLICLKKPDMQSAMAKLKQLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKK 383
Query: 7463 KFVKLCPDTFVRWTKTWKCSNIFDFLYDLGTLCIEV 7356
KF+ PD + TWK N FDFL L L +EV
Sbjct: 384 KFLDFAPDWLLHGFMTWKSGNFFDFLMSLKILQVEV 419
Score = 85.1 bits (209), Expect = 2e-12
Identities = 70/271 (25%), Positives = 120/271 (44%), Gaps = 12/271 (4%)
Frame = -3
Query: 6533 LIDVPADGNCFFHAIIKTFECVENHVEMRSDFSCWLRERDPNSHLWELIAKDGVFMEHEL 6354
+I ADG CFFH ++ T + + + F +++ D + ++ ++G + E +
Sbjct: 714 IIQASADGRCFFHTLLSTSLFRGSVNNLVNTFCNFIKSLDEHEAARQV--QEGAYPEGWM 771
Query: 6353 IYLFAISRGLKIVVHLNDDVFAFGDGCSEGHIFCDGHHFMAYETFALNCKVSFD----LI 6186
I LF + G+++ H + + S FC +L + FD L
Sbjct: 772 INLFLANYGIRMCCHQHSADGVTIETGSGPISFC-----------SLKMENHFDYLRCLS 820
Query: 6185 DGIKGYYEPKLEKYKFIQSDFVC-------HSFRGRKAAFFSKVGA-DYGHNGMMYPLNQ 6030
G+ + L K + + SFRGR + FF++ DYGHNG Y
Sbjct: 821 SGVSKEHTGLLGKTTYPSGPIINALQGLKPKSFRGRSSFFFARSNEIDYGHNGFKYRTEN 880
Query: 6029 WIPSLDEIIQTCDPDGKYNSALIQWYEGGATLGLHRDNEIVYSDSEILTVNLSGNCIFRV 5850
W LD+ I + D +N+ L+Q Y+ G+ + H+DNE Y+ ILTVN G +F
Sbjct: 881 WFAELDDFIPS---DLIFNACLVQVYDRGSKISFHKDNEQCYAGYPILTVNF-GLALFEF 936
Query: 5849 EVEKKQIEFEMSDASFFIMPKGFQKKARHGV 5757
+ + F ++D ++ + +K RH V
Sbjct: 937 DSGE---AFNLTDGDTILLSGDYLRKKRHRV 964
>gb|AFA43541.1| coat protein [Citrus leaf blotch virus]
Length = 363
Score = 707 bits (1825), Expect = 0.0
Identities = 347/363 (95%), Positives = 362/363 (99%)
Frame = -1
Query: 1621 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 1442
MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1 MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60
Query: 1441 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 1262
ILATKYGRVYSK+VEELNESLKAAILAGAEAEDLRNKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61 ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120
Query: 1261 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 1082
NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121 NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180
Query: 1081 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 902
DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181 DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240
Query: 901 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 722
IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300
Query: 721 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 542
TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360
Query: 541 IEM 533
IEM
Sbjct: 361 IEM 363
>gb|AFA43526.1| coat protein [Citrus leaf blotch virus] gi|375271897|gb|AFA43540.1|
coat protein [Citrus leaf blotch virus]
Length = 363
Score = 704 bits (1817), Expect = 0.0
Identities = 346/363 (95%), Positives = 361/363 (99%)
Frame = -1
Query: 1621 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 1442
MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1 MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60
Query: 1441 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 1262
ILATKYGRVYSK+VEELNESLKAAILAGAEAEDL NKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61 ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120
Query: 1261 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 1082
NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121 NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180
Query: 1081 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 902
DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181 DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240
Query: 901 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 722
IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300
Query: 721 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 542
TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360
Query: 541 IEM 533
IEM
Sbjct: 361 IEM 363
>gb|AFA43545.1| coat protein [Citrus leaf blotch virus]
Length = 363
Score = 702 bits (1812), Expect = 0.0
Identities = 344/363 (94%), Positives = 361/363 (99%)
Frame = -1
Query: 1621 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 1442
MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1 MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60
Query: 1441 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 1262
ILATKYGRVYSK+VEELNESLKAAILAGAEAEDL NKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61 ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120
Query: 1261 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 1082
NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121 NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180
Query: 1081 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 902
DEHL+RVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181 DEHLRRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240
Query: 901 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 722
IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300
Query: 721 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 542
TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360
Query: 541 IEM 533
+EM
Sbjct: 361 LEM 363
>gb|AFA43547.1| coat protein [Citrus leaf blotch virus]
Length = 363
Score = 702 bits (1811), Expect = 0.0
Identities = 343/363 (94%), Positives = 360/363 (99%)
Frame = -1
Query: 1621 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 1442
MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1 MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60
Query: 1441 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 1262
ILATKYGRVYSK++EELNESLKAAILAGAEAEDLRNKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61 ILATKYGRVYSKKIEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120
Query: 1261 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 1082
NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121 NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180
Query: 1081 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 902
DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGK HMRKDIAYA
Sbjct: 181 DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKGHMRKDIAYA 240
Query: 901 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 722
IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300
Query: 721 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 542
TEADGSV LIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301 TEADGSVGLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360
Query: 541 IEM 533
+EM
Sbjct: 361 LEM 363
>gb|AFA43544.1| coat protein [Citrus leaf blotch virus]
Length = 363
Score = 701 bits (1809), Expect = 0.0
Identities = 344/363 (94%), Positives = 360/363 (99%)
Frame = -1
Query: 1621 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 1442
MKITN+NATTI+YWLA+VEPFLTSD +RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1 MKITNDNATTINYWLAIVEPFLTSDVERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60
Query: 1441 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 1262
ILATKYGRVYSK+VEELNESLKAAILAGAEAEDLRNKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61 ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLRNKLKDISQRYASQIEITADRELQLE 120
Query: 1261 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 1082
NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN
Sbjct: 121 NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 180
Query: 1081 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 902
DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDK PYDGIIKISGKSHMRKDIAYA
Sbjct: 181 DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKGPYDGIIKISGKSHMRKDIAYA 240
Query: 901 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 722
IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300
Query: 721 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 542
TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360
Query: 541 IEM 533
+EM
Sbjct: 361 LEM 363
>gb|AFA43543.1| coat protein [Citrus leaf blotch virus]
Length = 363
Score = 701 bits (1809), Expect = 0.0
Identities = 344/363 (94%), Positives = 360/363 (99%)
Frame = -1
Query: 1621 MKITNENATTISYWLAVVEPFLTSDEDRNSDDLIQKFRAVVAEHGDTEELDPDVFFAIFS 1442
MKITN+NATTI+YWLA+VEPFLTSDE+RNSDD+IQKFRAVVAEHGDTEE+DP+VFFAIFS
Sbjct: 1 MKITNDNATTINYWLAIVEPFLTSDEERNSDDIIQKFRAVVAEHGDTEEVDPEVFFAIFS 60
Query: 1441 ILATKYGRVYSKRVEELNESLKAAILAGAEAEDLRNKLKDVSQKYASQVEITADRELQLE 1262
ILATKYGRVYSK+VEELNESLKAAILAGAEAEDL NKLKD+SQ+YASQ+EITADRELQLE
Sbjct: 61 ILATKYGRVYSKKVEELNESLKAAILAGAEAEDLINKLKDISQRYASQIEITADRELQLE 120
Query: 1261 NLRKKGHEQPLTGSGSSEPAHTEPAHTPQLHVVNDLQQFYIPFNEYPSLTQSIGTSDVAN 1082
NLRKKGHEQPLTGSGSSEPAH EPAHTPQLHVVNDLQQ YIPFNEYPSLTQSIGTSDVAN
Sbjct: 121 NLRKKGHEQPLTGSGSSEPAHNEPAHTPQLHVVNDLQQLYIPFNEYPSLTQSIGTSDVAN 180
Query: 1081 DEHLKRVQLTLKITNTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 902
DEHLKRVQLTLKIT+TKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA
Sbjct: 181 DEHLKRVQLTLKITDTKVFSRTGFEFAISCGSRSTSDKDPYDGIIKISGKSHMRKDIAYA 240
Query: 901 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 722
IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP
Sbjct: 241 IRTSGITVRQFCAAFANLYWNFNLARNTPPENWRKKGFTEGTKFAAFDFFYAVGSNAAIP 300
Query: 721 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNAKTAGHVTSSPLYNRGSSYESKNKARL 542
TEADGSVRLIRPPTNEENEANSAMRYADIYEQN+KTAGHVTSSPLYN+GSSYESKNKA+L
Sbjct: 301 TEADGSVRLIRPPTNEENEANSAMRYADIYEQNSKTAGHVTSSPLYNKGSSYESKNKAKL 360
Query: 541 IEM 533
+EM
Sbjct: 361 LEM 363