BLASTX nr result
ID: Rehmannia28_contig00000080
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00000080
(7108 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1] 4100 0.0
gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2] 4023 0.0
gb|AKN59247.1| polyprotein [Lychnis mottle virus] 3991 0.0
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 3638 0.0
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 1217 0.0
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v... 971 0.0
ref|YP_227370.1| helicase [Strawberry latent ringspot virus] 946 0.0
ref|YP_227372.1| protease [Strawberry latent ringspot virus] 495 e-157
gb|AAZ76594.1| polyprotein, partial [Stocky prune virus] 318 2e-88
ref|YP_009220374.1| polyprotein [Currant latent virus] gi|966557... 326 5e-86
gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus] 281 1e-83
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe... 301 2e-83
gb|AHN52254.1| polyprotein, partial [Currant latent virus] 301 2e-83
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ... 296 8e-82
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]... 311 1e-81
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus] 311 1e-81
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] gi|8200270... 306 8e-80
ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523... 299 1e-77
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus] 278 2e-71
gb|AAY32935.1| RNA-dependent RNA polymerase, partial [Radish mos... 253 2e-67
>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
Length = 2205
Score = 4100 bits (10632), Expect = 0.0
Identities = 2016/2209 (91%), Positives = 2084/2209 (94%)
Frame = -2
Query: 6924 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 6745
MGYSRGSRGKADKAKLCGICFAPFPDAQERK HY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 6744 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 6565
KNLQVERDRCAMRE+EEEELL ADVEMEFMSEL+ F+APF FPGI+FGTV+ T P +GSS
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTVPKIGSS 120
Query: 6564 YAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVRTAIVNPGFGNPSF 6385
YA + I +A GL V EY KFQAP+AG RNFL+ + DAEVLT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPKAGVRNFLQPNCRTDAEVLTTIVRTAIENPGFGNPSF 180
Query: 6384 DYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIITQA 6205
DYTGLGGDEFKYRFDKDGLFADD+LGL RFVSAGFTEGS+P VAPL+ D ++ QA
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSRPNVFDVAPLTSGDFKVMIQA 240
Query: 6204 LSDEWCEWIYFEEDYEEALFEGFEVFYPPFVDAEMQKSVTTPEPLSPTCVLDSAGSYFPG 6025
LSDEW EWIYFEEDYEEAL E FE+F+P A+ V P PLSPT VLDSA SY PG
Sbjct: 241 LSDEWSEWIYFEEDYEEALSEEFEIFFPFLESAK----VCEPAPLSPTSVLDSADSYLPG 296
Query: 6024 TKWVYDSDEEDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQPAGSIYTETWFLDGCLPGP 5845
TKWVYDSDEED+IP+AP+D+F+NK+FDLDFEDYCDTEY +QPA ++YTETWF+DGCLPGP
Sbjct: 297 TKWVYDSDEEDHIPVAPIDRFHNKKFDLDFEDYCDTEYLEQPAETVYTETWFIDGCLPGP 356
Query: 5844 WFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEREARPNKK 5665
WFKRG SLDEAIICEKLPLIGKSPLEL+IQYQV+PTGDLLLDVQRALFAYYE+EA PNKK
Sbjct: 357 WFKRGVSLDEAIICEKLPLIGKSPLELIIQYQVKPTGDLLLDVQRALFAYYEKEAWPNKK 416
Query: 5664 YFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVVNAPLPGWLLDFPKRRKSGT 5485
+FDLNGVPTMLVFEDWR DLRYCLYAP ++GNQLKHLM +V+APLPGWLLDFPKR+KSGT
Sbjct: 417 HFDLNGVPTMLVFEDWRCDLRYCLYAPFVQGNQLKHLMAIVDAPLPGWLLDFPKRQKSGT 476
Query: 5484 LQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 5305
LQASGWN LRYFSKQATLGFLDGV+AKLRELLGPVINAAGYVWDLIIKAKDYAF+MLDEM
Sbjct: 477 LQASGWNPLRYFSKQATLGFLDGVIAKLRELLGPVINAAGYVWDLIIKAKDYAFAMLDEM 536
Query: 5304 ISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 5125
IS+RGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 537 ISKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 596
Query: 5124 LGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVEESPEKEEWLRGLMASPHSI 4945
LGQAHMGALKRSTKIWELVQKWDQPSEV+RID+EI+EILVEESPEKEEW R LMASPHSI
Sbjct: 597 LGQAHMGALKRSTKIWELVQKWDQPSEVRRIDEEIVEILVEESPEKEEWFRELMASPHSI 656
Query: 4944 PECVIDLTHMKDLLGEKCSSYKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 4765
PECVIDLTHMKDLLG KCSS+KEAFEVG VASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 657 PECVIDLTHMKDLLGGKCSSFKEAFEVGTSVASSPGMLFGSGFIWKILLLLCPLSMFGVS 716
Query: 4764 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 4585
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYAT+GVDFQAWR
Sbjct: 717 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATIGVDFQAWR 776
Query: 4584 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 4405
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 777 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 836
Query: 4404 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 4225
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG
Sbjct: 837 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 896
Query: 4224 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSD 4045
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR LEAKGNTCCTSD
Sbjct: 897 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 956
Query: 4044 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3865
FVFITANQAGLTPGAVVHC+KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 957 FVFITANQAGLTPGAVVHCRKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1016
Query: 3864 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXEGFRVAGIKVPF 3685
RFQVMNYEQFLQYTVNQS+QHFSEQVDLRDAPHTQIF EGF+ AGIKVPF
Sbjct: 1017 RFQVMNYEQFLQYTVNQSRQHFSEQVDLRDAPHTQIFAAADQIAAEAEEGFQTAGIKVPF 1076
Query: 3684 TMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAYVNLK 3505
TMLK+LSGDQLTYYSEEKMME+TETLTPEDADIIRSRLDPGVITQQLQ+LLPKAAYVNLK
Sbjct: 1077 TMLKSLSGDQLTYYSEEKMMEITETLTPEDADIIRSRLDPGVITQQLQMLLPKAAYVNLK 1136
Query: 3504 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQHKRGFATIAKELAQGAYKA 3325
NHFGLGTDPFEQPNPYFNCSQRAKVIGRFM+PKVTEEQLEQHKRGF IAKELAQGA KA
Sbjct: 1137 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEQHKRGFVVIAKELAQGACKA 1196
Query: 3324 INDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 3145
INDAPFLVKLLLGFGALYFVGLPLLSWL+SLYT PCLLTFATLGTMKASGSLSSSQDQ
Sbjct: 1197 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTTPCLLTFATLGTMKASGSLSSSQDQET 1256
Query: 3144 XXXXXXXXXXRYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 2965
RYLLEASG GAVEAK QDVESELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1257 RRTASGRERRRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 1316
Query: 2964 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 2785
TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV
Sbjct: 1317 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 1376
Query: 2784 LKIEKWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 2605
LKIEKWLLSSHDPFMAGSGWFMEMLFRD+GVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1377 LKIEKWLLSSHDPFMAGSGWFMEMLFRDHGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1436
Query: 2604 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 2425
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKD II
Sbjct: 1437 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDAII 1496
Query: 2424 AGSGSLITREEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAP 2245
AGSGSLIT+EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPS AP
Sbjct: 1497 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSEAP 1556
Query: 2244 RQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 2065
RQATTSEIRKSSISADLE LTGEK+KTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD
Sbjct: 1557 RQATTSEIRKSSISADLEALTGEKKKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 1616
Query: 2064 MSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWP 1885
MSPVTEEEQKIWDLTWDSIFDLPGGI KKC LLSEDENLNGVNGDNEYRGMVVSTSEGWP
Sbjct: 1617 MSPVTEEEQKIWDLTWDSIFDLPGGIEKKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 1676
Query: 1884 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1705
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL
Sbjct: 1677 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1736
Query: 1704 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1525
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1737 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1796
Query: 1524 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSRRLHLMLAATTRLGVA 1345
KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND+QG+RRLHLMLAATTRLGVA
Sbjct: 1797 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGNRRLHLMLAATTRLGVA 1856
Query: 1344 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 1165
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV
Sbjct: 1857 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 1916
Query: 1164 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 985
SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1917 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1976
Query: 984 LAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSK 805
LAP LHWVRETN+SNA ATQNNVEGFLRELFHYGDK+LYCKWRRDLIDLCSK
Sbjct: 1977 LAPLSWLSLSESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKNLYCKWRRDLIDLCSK 2036
Query: 804 NRVPHPTTYSFEELERSWLSGRSVASIFEKEEPEVIVIRDSASDVAPGVHIVPVQQCLKW 625
NRVPHPTTYSFEELERSWLSG+SVASIFEKEEPE+IVIRDSASDVAPGVHIVPV+QCLKW
Sbjct: 2037 NRVPHPTTYSFEELERSWLSGKSVASIFEKEEPEIIVIRDSASDVAPGVHIVPVRQCLKW 2096
Query: 624 RAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRNLLKKVHQRGDEVYFTG 445
AGEVPNVVWCGPNCPNQLRNAS+CFQIQAPQGSKYPLRNT RNLLKKVHQRGDEVYFTG
Sbjct: 2097 NAGEVPNVVWCGPNCPNQLRNASSCFQIQAPQGSKYPLRNTTRNLLKKVHQRGDEVYFTG 2156
Query: 444 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 298
SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2157 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2205
>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
Length = 2209
Score = 4023 bits (10434), Expect = 0.0
Identities = 1962/2209 (88%), Positives = 2063/2209 (93%)
Frame = -2
Query: 6924 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 6745
MGYSRGSRGKADKAKLCGICFAPFPDAQERK HY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 6744 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 6565
KNLQVERDRCAMRE+EEEELL ADVEMEFMSEL+ F+APF FPGI+FGTV+ T P +GSS
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTDPKIGSS 120
Query: 6564 YAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVRTAIVNPGFGNPSF 6385
YA + I +A GL V EY KFQAPRAGARNFL+ + D EVLT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPRAGARNFLQPNCRTDVEVLTTIVRTAIENPGFGNPSF 180
Query: 6384 DYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIITQA 6205
DYTGLGGDEFKYRFDKDGLFADD+LGL RFVSAGFTEGSKP VAPL+ D +++ +A
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSKPNVFDVAPLTSGDFNVMMRA 240
Query: 6204 LSDEWCEWIYFEEDYEEALFEGFEVFYPPFVDAEMQKSVTTPEPLSPTCVLDSAGSYFPG 6025
LSDEW EW YFEEDYEEAL EGFE+F+PP E KS P SPTCVLDSA SY G
Sbjct: 241 LSDEWVEWCYFEEDYEEALTEGFELFFPPHNGVETLKSSLGSGPSSPTCVLDSADSYLSG 300
Query: 6024 TKWVYDSDEEDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQPAGSIYTETWFLDGCLPGP 5845
TKWVYDSDEE+Y+P+APVDQF+NK+F+LDF DYCD EY +QP GS+ TETWF+DGCLPGP
Sbjct: 301 TKWVYDSDEEEYVPVAPVDQFHNKKFNLDFIDYCDLEYIEQPVGSLRTETWFIDGCLPGP 360
Query: 5844 WFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEREARPNKK 5665
WFKRGA +DEA+ICEKLPLIGKSPLEL+IQYQV PTGDLLLD+QRALFAYYEREA PNKK
Sbjct: 361 WFKRGALIDEAVICEKLPLIGKSPLELIIQYQVAPTGDLLLDIQRALFAYYEREALPNKK 420
Query: 5664 YFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVVNAPLPGWLLDFPKRRKSGT 5485
+FDLNGVPT+LVFEDWR+DLRYCL+AP I GNQLKHLMVV++ PLPGWLLDFPKR++SG
Sbjct: 421 FFDLNGVPTLLVFEDWRADLRYCLFAPFISGNQLKHLMVVIDTPLPGWLLDFPKRQRSGL 480
Query: 5484 LQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 5305
LQASGWN LRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDL+IKAKDYAFSMLDEM
Sbjct: 481 LQASGWNPLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLVIKAKDYAFSMLDEM 540
Query: 5304 ISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 5125
IS+RGEIL+ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 541 ISKRGEILRALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 600
Query: 5124 LGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVEESPEKEEWLRGLMASPHSI 4945
LG AHMGALKRSTKIWELVQKWD+PSEVK ID EII+IL+EESPEKEEWLR LMASPHS+
Sbjct: 601 LGHAHMGALKRSTKIWELVQKWDKPSEVKCIDGEIIDILIEESPEKEEWLRELMASPHSV 660
Query: 4944 PECVIDLTHMKDLLGEKCSSYKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 4765
PECVIDLTHMKDLLG KCS++KEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 661 PECVIDLTHMKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 720
Query: 4764 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 4585
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTG KSEFLDYIYATVGVDFQAWR
Sbjct: 721 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGGKSEFLDYIYATVGVDFQAWR 780
Query: 4584 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 4405
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 781 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 840
Query: 4404 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 4225
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD+LDSLDYAQTGRVFSRNG
Sbjct: 841 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDLLDSLDYAQTGRVFSRNG 900
Query: 4224 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSD 4045
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR LEAKGNTCCTSD
Sbjct: 901 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 960
Query: 4044 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3865
FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 961 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1020
Query: 3864 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXEGFRVAGIKVPF 3685
RFQVMNYEQFLQY VNQSKQHFSEQVDLRDAPHTQIF EGF+ AGIK+PF
Sbjct: 1021 RFQVMNYEQFLQYAVNQSKQHFSEQVDLRDAPHTQIFSAADQIAAEAEEGFQTAGIKIPF 1080
Query: 3684 TMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAYVNLK 3505
MLK+LSGDQLTYYSEEKMMEVTETL PEDADIIRSRLDPG+ITQQLQ LLPKAAYVNLK
Sbjct: 1081 CMLKSLSGDQLTYYSEEKMMEVTETLAPEDADIIRSRLDPGMITQQLQALLPKAAYVNLK 1140
Query: 3504 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQHKRGFATIAKELAQGAYKA 3325
NHF LGTDPFEQPNPYFNCSQRAKVIGRFM+PKVTEEQLE HKRGF IAKELAQGAYKA
Sbjct: 1141 NHFSLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEHHKRGFMMIAKELAQGAYKA 1200
Query: 3324 INDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 3145
++DAPFLVKLLLGFGALYFVG PLLSWL+SLYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1201 VSDAPFLVKLLLGFGALYFVGAPLLSWLKSLYTAPCLLTFTTLGAMKASGSLSSSQDQET 1260
Query: 3144 XXXXXXXXXXRYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 2965
RYLLEASG GAVEAK QDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1261 RRTASGRERRRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGG 1320
Query: 2964 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 2785
TRVLMVYHVWLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTFVSFPV
Sbjct: 1321 TRVLMVYHVWLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFVSFPV 1380
Query: 2784 LKIEKWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 2605
LK+EKWLLSSHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1381 LKLEKWLLSSHDPFMAGSGWFMEMLFQKNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1440
Query: 2604 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 2425
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTII
Sbjct: 1441 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTII 1500
Query: 2424 AGSGSLITREEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAP 2245
AGSGSLIT+EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL+PS+AP
Sbjct: 1501 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLQPSDAP 1560
Query: 2244 RQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 2065
RQAT+SEI+KSSISADLE+LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAAD
Sbjct: 1561 RQATSSEIKKSSISADLEMLTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAAD 1620
Query: 2064 MSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWP 1885
MSPVTE+E+KIW+LTWDSIFDLPGGI KC LLSEDENLNGVNGDNEYRGMVV+TSEGWP
Sbjct: 1621 MSPVTEDEEKIWNLTWDSIFDLPGGIASKCHLLSEDENLNGVNGDNEYRGMVVTTSEGWP 1680
Query: 1884 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1705
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRI+DMDELC TTIPCIVGLDTAKDERL
Sbjct: 1681 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRIVDMDELCKTTIPCIVGLDTAKDERL 1740
Query: 1704 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1525
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1741 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1800
Query: 1524 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSRRLHLMLAATTRLGVA 1345
KRMHAKGTNWFNGD SRFDGVTPRCLL+EI+RRITLLY D+QG RRLHLMLAATTRLGVA
Sbjct: 1801 KRMHAKGTNWFNGDSSRFDGVTPRCLLVEISRRITLLYGDDQGDRRLHLMLAATTRLGVA 1860
Query: 1344 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 1165
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS+SLFFSDCVELAVVGDDNLV
Sbjct: 1861 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 1920
Query: 1164 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 985
SVK++AA+DFNLKKLS+FLA FGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1921 SVKQIAAADFNLKKLSSFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1980
Query: 984 LAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSK 805
LAP LHWVRETN+SN+ ATQNNVEGFLRELFHYGDK+LYCKWRRDLIDLCSK
Sbjct: 1981 LAPLSWLSLSESLHWVRETNMSNSAATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 2040
Query: 804 NRVPHPTTYSFEELERSWLSGRSVASIFEKEEPEVIVIRDSASDVAPGVHIVPVQQCLKW 625
NRVPHPTTYSFEELERSWLSG++VASIFEKEEPEVIVIRD ASD+AP VHI+PVQQCLKW
Sbjct: 2041 NRVPHPTTYSFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPDVHIIPVQQCLKW 2100
Query: 624 RAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRNLLKKVHQRGDEVYFTG 445
R+ EVPNVVWCGPNCPNQL+NASTCFQIQAPQGSKYPLR+T+RN LKKVHQRGD+VYFTG
Sbjct: 2101 RSDEVPNVVWCGPNCPNQLKNASTCFQIQAPQGSKYPLRSTIRNFLKKVHQRGDKVYFTG 2160
Query: 444 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 298
++NQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2161 AINQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW 2209
>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
Length = 2260
Score = 3991 bits (10350), Expect = 0.0
Identities = 1960/2260 (86%), Positives = 2065/2260 (91%), Gaps = 51/2260 (2%)
Frame = -2
Query: 6924 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 6745
MGYSRGSRGKADKAKLCGICFAPFPDAQERK HY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 6744 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 6565
KNLQVERDRCAMRE+EEEELL ADVEMEF+SEL+ FVAPFSFPGI+FGT++ T P +G+S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFVSELMDFVAPFSFPGISFGTISMTTPKIGAS 120
Query: 6564 YAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVRTAIVNPGFGNPSF 6385
YA + IF+A G V EYTKFQAP+AGARNFL+ DR DAE+LT VVRTAI NPGFGNPSF
Sbjct: 121 YAGRKIFKAKGFDVEEYTKFQAPKAGARNFLQPDRKSDAEILTTVVRTAIENPGFGNPSF 180
Query: 6384 DYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPE------------------ 6259
DYTGLGGDEF+YRF KDGLFADD+LGL RFVSAGFTEGS+
Sbjct: 181 DYTGLGGDEFRYRFGKDGLFADDDLGLARFVSAGFTEGSRSNALDVAPLTPGDLDVISFG 240
Query: 6258 --------------GRS-------------------VAPLSFEDLDIITQALSDEWCEWI 6178
GR VAPL+ DLD++TQALSDEW W
Sbjct: 241 TISMTNPKIGASYAGRKLARFVSAGFTEGSRSNALDVAPLTPGDLDVMTQALSDEWVGWY 300
Query: 6177 YFEEDYEEALFEGFEVFYPPFVDAEMQKSVTTPEPLSPTCVLDSAGSYFPGTKWVYDSDE 5998
+ EEDYEEAL E F +++PP + +S+ E LSPTCVLDSA SY PGTKWVYDSDE
Sbjct: 301 HLEEDYEEALIEEFALYFPPHDRVKDTESLLGSESLSPTCVLDSADSYPPGTKWVYDSDE 360
Query: 5997 EDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQPAGSIYTETWFLDGCLPGPWFKRGASLD 5818
EDY+P APVD+F+NK+F+LDF DYCD E +QPA +IYTETWF+DGCLPG WFKRG +D
Sbjct: 361 EDYVPTAPVDRFHNKKFNLDFIDYCDMECVEQPAENIYTETWFIDGCLPGFWFKRGTPID 420
Query: 5817 EAIICEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEREARPNKKYFDLNGVPT 5638
EA++CEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYE+EA PNKK+FDLNGVPT
Sbjct: 421 EAVVCEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEKEALPNKKFFDLNGVPT 480
Query: 5637 MLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVVNAPLPGWLLDFPKRRKSGTLQASGWNFL 5458
+LVFEDWR+DLRYCL+AP I+GNQLKHLMVV++APLPGWLLDFPKR+KSG LQASGWN L
Sbjct: 481 LLVFEDWRADLRYCLFAPFIQGNQLKHLMVVIDAPLPGWLLDFPKRQKSGLLQASGWNPL 540
Query: 5457 RYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEMISRRGEILK 5278
RYF++Q TLGFLDGVVAKLRELLGPV+NAAGYVWDL+IKAKDYAFSMLDEMIS+RGEIL+
Sbjct: 541 RYFARQTTLGFLDGVVAKLRELLGPVVNAAGYVWDLVIKAKDYAFSMLDEMISKRGEILR 600
Query: 5277 ALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 5098
ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL
Sbjct: 601 ALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 660
Query: 5097 KRSTKIWELVQKWDQPSEVKRIDKEIIEILVEESPEKEEWLRGLMASPHSIPECVIDLTH 4918
KRSTKIWELVQKWD+PSEVK ID+EII++LVEESPEKEEWLR LMASPHS+PECVIDLTH
Sbjct: 661 KRSTKIWELVQKWDKPSEVKHIDEEIIDLLVEESPEKEEWLRELMASPHSVPECVIDLTH 720
Query: 4917 MKDLLGEKCSSYKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 4738
MKDLLG KCS++KEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL
Sbjct: 721 MKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 780
Query: 4737 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 4558
ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA
Sbjct: 781 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 840
Query: 4557 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQA 4378
TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRK PGAYITHFNNLLQSLDRALVECQQA
Sbjct: 841 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKAPGAYITHFNNLLQSLDRALVECQQA 900
Query: 4377 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 4198
LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK
Sbjct: 901 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 960
Query: 4197 NQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQA 4018
NQSAVLYDDFGAVSEGGHFDEAEIIR LEAKGNTCCTSDFVFITANQA
Sbjct: 961 NQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSDFVFITANQA 1020
Query: 4017 GLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 3838
GLTP AVVHCK+AFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ
Sbjct: 1021 GLTPSAVVHCKRAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 1080
Query: 3837 FLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXEGFRVAGIKVPFTMLKNLSGD 3658
FLQY VNQS+QHFSEQVDLRDAPHTQIF EG R AGI++PF MLK+LSGD
Sbjct: 1081 FLQYAVNQSQQHFSEQVDLRDAPHTQIFTAADQIAAEAEEGLRTAGIEIPFCMLKSLSGD 1140
Query: 3657 QLTYYSEEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAYVNLKNHFGLGTDP 3478
QLTYYSEE+MMEVTETL PE+ADI+RSRLDPGVITQQLQ LLPKAAYVNLKNHFGLGTDP
Sbjct: 1141 QLTYYSEEEMMEVTETLAPEEADIVRSRLDPGVITQQLQALLPKAAYVNLKNHFGLGTDP 1200
Query: 3477 FEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQHKRGFATIAKELAQGAYKAINDAPFLVK 3298
FEQPNPYFNCSQRAKVIGRF++PKVTEEQLEQ KRGF +AKELAQGA KAINDAPFLVK
Sbjct: 1201 FEQPNPYFNCSQRAKVIGRFLKPKVTEEQLEQRKRGFMVVAKELAQGACKAINDAPFLVK 1260
Query: 3297 LLLGFGALYFVGLPLLSWLRSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXX 3118
LLLGFGALYFVG PLLSWLR+LYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1261 LLLGFGALYFVGAPLLSWLRNLYTAPCLLTFTTLGAMKASGSLSSSQDQETRRTASGRER 1320
Query: 3117 XRYLLEASGSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 2938
RYLLEASG GAVEAK QDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV
Sbjct: 1321 RRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 1380
Query: 2937 WLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLS 2758
WLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTF SFPVLK+EKWLLS
Sbjct: 1381 WLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFASFPVLKLEKWLLS 1440
Query: 2757 SHDPFMAGSGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 2578
SHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC
Sbjct: 1441 SHDPFMAGSGWFMEMLFQRNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 1500
Query: 2577 DDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITR 2398
DDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSLIT+
Sbjct: 1501 DDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLITK 1560
Query: 2397 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIR 2218
EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL PS+APRQAT+SEI+
Sbjct: 1561 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLTPSDAPRQATSSEIK 1620
Query: 2217 KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEQ 2038
KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPVTEEE+
Sbjct: 1621 KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPVTEEEE 1680
Query: 2037 KIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 1858
K+W+LTWDSIFDLPGGI KC LL+EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE
Sbjct: 1681 KVWNLTWDSIFDLPGGIAGKCHLLTEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 1740
Query: 1857 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 1678
AGKERFLLGLPGCYTLNRDLPMYQRILDMDELC TTIPCIVGLDTAKDERLPLSKIYQDV
Sbjct: 1741 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCKTTIPCIVGLDTAKDERLPLSKIYQDV 1800
Query: 1677 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1498
KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN
Sbjct: 1801 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1860
Query: 1497 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSRRLHLMLAATTRLGVAGIGLYRVSG 1318
WFNGDYSRFDGVTPRCLL+EI+RRIT LYNDNQG RRLHLMLAATTRLGVAGIGLYRVSG
Sbjct: 1861 WFNGDYSRFDGVTPRCLLVEISRRITALYNDNQGDRRLHLMLAATTRLGVAGIGLYRVSG 1920
Query: 1317 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLVSVKEVAASD 1138
GIPSGFALTVIVNSLVNHFLVRWSWEHMMAS+SLFFSDCVELAVVGDDNLVSVK++AA+D
Sbjct: 1921 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKQIAAAD 1980
Query: 1137 FNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXX 958
FNLKKLS FLA FGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAP
Sbjct: 1981 FNLKKLSLFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSL 2040
Query: 957 XXXLHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSKNRVPHPTTY 778
LHWVRETN+SNA ATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCS+NRVPHPTTY
Sbjct: 2041 SESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSRNRVPHPTTY 2100
Query: 777 SFEELERSWLSGRSVASIFEKEEPEVIVIRDSASDVAPGVHIVPVQQCLKWRAGEVPNVV 598
SFEELERSWLSG++VASIFEKEEPEVIVIRD ASD+APGVHIVPVQQCLKW+ E+PNVV
Sbjct: 2101 SFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPGVHIVPVQQCLKWKPDEIPNVV 2160
Query: 597 WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRNLLKKVHQRGDEVYFTGSLNQSLVHW 418
WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVR+ LKKVHQRGD+VYFTG+LNQSLVHW
Sbjct: 2161 WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRSFLKKVHQRGDKVYFTGALNQSLVHW 2220
Query: 417 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTVAAKGW 298
VAAFYASMYRESFHHSAYMKAYFGDNDAGLLEST+AAKGW
Sbjct: 2221 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2260
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
[Strawberry latent ringspot virus]
Length = 2227
Score = 3638 bits (9435), Expect = 0.0
Identities = 1785/2229 (80%), Positives = 1949/2229 (87%), Gaps = 20/2229 (0%)
Frame = -2
Query: 6924 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 6745
MGYSRGSRG ADK KLCGICFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 6744 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 6565
+NL+VE DR + ++ L D+EM FMS+L F FS IT G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 6564 YAHQAIFEADGLGVVEYTKFQAPRAGA--RNFLRADRVCDAEVLTGVVRTAIVNPGFGNP 6391
Y + I++A GL V +Y FQ + R FL DR DAEVLT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 6390 SFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIIT 6211
+FDYTGLGGD KYRFD D L++D + GL RFVSAGFTE +K G L+ +D+D +T
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK--GSLDLKLTLQDVDEMT 238
Query: 6210 QALSDEWCEWIYFEEDYEEALFE--GFEVFYPPFVDAEMQKSVTT--------------- 6082
QALSDEW EW+YFEED EE L E ++ + A QK
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 6081 PEPLSPTCVLDSAGSYFPGTKWVYDSDEEDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQ 5902
P+SP VL SA SY GTKW YDS++EDY+P+AP+D+F+NK+ D+DF D CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 5901 PAGSIYTETWFLDGCLPGPWFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLL 5722
P+G+IYTETWF+DGCLPG WFKRG ++DEA++CEKLPLIGK+PLELMIQYQVEPTGDLLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 5721 DVQRALFAYYEREARPNKKYFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVV 5542
D+QRALFAYYE+EA PNKKYF+LNGVPTM+V EDWR DLRYCLYAP I+G+QLKHLMVV+
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 5541 NAPLPGWLLDFPKRRKSGTLQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGY 5362
NAPLPGWL+DFPKRRKSG LQASGWN LRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 5361 VWDLIIKAKDYAFSMLDEMISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 5182
VWDLIIKAKD+AF L++MI +RGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 5181 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVE 5002
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK ID++IIE+LVE
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 5001 ESPEKEEWLRGLMASPHSIPECVIDLTHMKDLLG-EKCSSYKEAFEVGAPVASSPGMLFG 4825
ESP+KEEW+R L+ASPH +PECVIDLTHMKDLL +KC+++K+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 4824 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 4645
SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG
Sbjct: 719 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778
Query: 4644 KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 4465
KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779 KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838
Query: 4464 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 4285
SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839 SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898
Query: 4284 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 4105
DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 899 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958
Query: 4104 XXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGR 3925
LEAKGNTCCTSDFVFITANQAGLTP AV+HCKKAFENRRLILAEVTAVEGGR
Sbjct: 959 PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018
Query: 3924 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXX 3745
YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078
Query: 3744 XXXXXXXXEGFRVAGIKVPFTMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDP 3565
EGF+ AGI +PF MLK + G +TYY EEK E+T L+ DADII SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138
Query: 3564 GVITQQLQVLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLE 3385
+ITQ+LQ+LLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198
Query: 3384 QHKRGFATIAKELAQGAYKAINDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTF 3205
KRGF + KELAQGA +AI+DAPFLVKLLLGFGALYFVGLP+L WL+SLY+AP L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258
Query: 3204 ATLGTMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGSGAVEAKTQDVESELASLSKHL 3025
A LGTM+ASGSLSSSQDQ RYLLEASG GA+EAK QDVE+ELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318
Query: 3024 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQR 2845
+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378
Query: 2844 LGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGWFMEMLFRDNGVLEVAREEAD 2665
+GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAGSGWFMEM+F+ NGVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438
Query: 2664 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGL 2485
YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDFFYVSQCGTPLVANYG+GKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498
Query: 2484 KIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLLLGEIKHPLETDRIQASGCLSGE 2305
KIASIHVVHHFSAT+KDTIIAGSGSL+T+EEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558
Query: 2304 EFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLH 2125
EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII NRDTRL
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618
Query: 2124 DRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLN 1945
DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI KC LLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678
Query: 1944 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE 1765
GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738
Query: 1764 LCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1585
L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798
Query: 1584 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND 1405
N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RIT LY D
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858
Query: 1404 NQGSRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 1225
RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918
Query: 1224 TSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEF 1045
+SLFF+DCVELAVVGDDNLVSVK+VAA DFNLKKLSAFLA FGFTLKDGSDKNKEILPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978
Query: 1044 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRELFH 865
NPPEKCDFLKRCFKARGDRYLAP LHWVRETN++NA ATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038
Query: 864 YGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFEKEEPEVIVIRD 685
YGDK+LYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSG++VASIFEKEEPE++V++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098
Query: 684 SASDVAPGVHIVPVQQCLKWRAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRN 505
+ASDVAP VHIVP Q CLKW+ EVP VVWCGPNCPNQLRNA+ CF IQAPQGS+YPLR+
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158
Query: 504 TVRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLL 325
TVRN LK+VHQR DEVYF G+L+QSLVHWVAAFYASMYRESF HS YM AYFGDND GLL
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218
Query: 324 ESTVAAKGW 298
E+ AAKGW
Sbjct: 2219 EAVTAAKGW 2227
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 1217 bits (3148), Expect = 0.0
Identities = 586/675 (86%), Positives = 622/675 (92%)
Frame = -2
Query: 2322 GCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHN 2143
GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII N
Sbjct: 1 GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60
Query: 2142 RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIGKKCRLLS 1963
RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI KC LLS
Sbjct: 61 RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120
Query: 1962 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 1783
EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180
Query: 1782 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 1603
ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181 ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240
Query: 1602 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 1423
ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241 ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300
Query: 1422 TLLYNDNQGSRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 1243
T LY D RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301 TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360
Query: 1242 EHMMASTSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNK 1063
EHMMAS+SLFF+DCVELAVVGDDNLVSVK+VAA DFNLKKLSAFLA FGFTLKDGSDKNK
Sbjct: 361 EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420
Query: 1062 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGF 883
EILPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETN++NA ATQNNVEGF
Sbjct: 421 EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480
Query: 882 LRELFHYGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFEKEEPE 703
LRELFHYGDK+LYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSG++VASIFEKEEPE
Sbjct: 481 LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540
Query: 702 VIVIRDSASDVAPGVHIVPVQQCLKWRAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGS 523
++V++D+ASDVAP VHIVP Q CLKW+ EVP VVWCGPNCPNQLRNA+ CF IQAPQGS
Sbjct: 541 IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600
Query: 522 KYPLRNTVRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGD 343
+YPLR+TVRN LK+VHQR DEVYF G+L+QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601 RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660
Query: 342 NDAGLLESTVAAKGW 298
ND GLLE+ AAKGW
Sbjct: 661 NDKGLLEAVTAAKGW 675
>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
Length = 719
Score = 971 bits (2511), Expect = 0.0
Identities = 483/721 (66%), Positives = 565/721 (78%), Gaps = 20/721 (2%)
Frame = -2
Query: 6924 MGYSRGSRGKADKAKLCGICFAPFPDAQERKAHYKKYNCRDDMGNLGGLVSTGRCARMKE 6745
MGYSRGSRG ADK KLCGICFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 6744 KNLQVERDRCAMREYEEEELLTADVEMEFMSELITFVAPFSFPGITFGTVTDTQPALGSS 6565
+NL+VE DR + ++ L D+EM FMS+L F FS IT G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 6564 YAHQAIFEADGLGVVEYTKFQAPRAGA--RNFLRADRVCDAEVLTGVVRTAIVNPGFGNP 6391
Y + I++A GL V +Y FQ + R FL DR DAEVLT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 6390 SFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLDIIT 6211
+FDYTGLGGD KYRFD D L++D + GL RFVSAGFTE +K G L+ +D+D +T
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK--GSLDLKLTLQDVDEMT 238
Query: 6210 QALSDEWCEWIYFEEDYEEALFE--GFEVFYPPFVDAEMQKSVTT--------------- 6082
QALSDEW EW+YFEED EE L E ++ + A QK
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 6081 PEPLSPTCVLDSAGSYFPGTKWVYDSDEEDYIPIAPVDQFYNKRFDLDFEDYCDTEYQKQ 5902
P+SP VL SA SY GTKW YDS++EDY+P+AP+D+F+NK+ D+DF D CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 5901 PAGSIYTETWFLDGCLPGPWFKRGASLDEAIICEKLPLIGKSPLELMIQYQVEPTGDLLL 5722
P+G+IYTETWF+DGCLPG WFKRG ++DEA++CEKLPLIGK+PLELMIQYQVEPTGDLLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 5721 DVQRALFAYYEREARPNKKYFDLNGVPTMLVFEDWRSDLRYCLYAPLIKGNQLKHLMVVV 5542
D+QRALFAYYE+EA PNKKYF+LNGVPTM+V EDWR DLRYCLYAP I+G+QLKHLMVV+
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 5541 NAPLPGWLLDFPKRRKSGTLQASGWNFLRYFSKQATLGFLDGVVAKLRELLGPVINAAGY 5362
NAPLPGWL+DFPKRRKSG LQASGWN LRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 5361 VWDLIIKAKDYAFSMLDEMISRRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 5182
VWDLIIKAKD+AF L++MI +RGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 5181 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRIDKEIIEILVE 5002
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK ID++IIE+LVE
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 5001 ESPEKEEWLRGLMASPHSIPECVIDLTHMKDLLG-EKCSSYKEAFEVGAPVASSPGMLFG 4825
ESP+KEEW+R L+ASPH +PECVIDLTHMKDLL +KC+++K+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 4824 S 4822
S
Sbjct: 719 S 719
>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
Length = 548
Score = 946 bits (2445), Expect = 0.0
Identities = 465/548 (84%), Positives = 494/548 (90%)
Frame = -2
Query: 4821 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 4642
GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60
Query: 4641 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 4462
SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61 SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120
Query: 4461 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 4282
RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121 RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180
Query: 4281 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 4102
DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 181 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240
Query: 4101 XXXXXXXLEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRY 3922
LEAKGNTCCTSDFVFITANQAGLTP AV+HCKKAFENRRLILAEVTAVEGGRY
Sbjct: 241 LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300
Query: 3921 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXX 3742
RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF
Sbjct: 301 RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360
Query: 3741 XXXXXXXEGFRVAGIKVPFTMLKNLSGDQLTYYSEEKMMEVTETLTPEDADIIRSRLDPG 3562
EGF+ AGI +PF MLK + G +TYY EEK E+T L+ DADII SRLDP
Sbjct: 361 QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420
Query: 3561 VITQQLQVLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFMRPKVTEEQLEQ 3382
+ITQ+LQ+LLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTE QLE
Sbjct: 421 MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480
Query: 3381 HKRGFATIAKELAQGAYKAINDAPFLVKLLLGFGALYFVGLPLLSWLRSLYTAPCLLTFA 3202
KRGF + KELAQGA +AI+DAPFLVKLLLGFGALYFVGLP+L WL+SLY+AP L+TFA
Sbjct: 481 SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540
Query: 3201 TLGTMKAS 3178
LGTM+AS
Sbjct: 541 ALGTMRAS 548
>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
Length = 257
Score = 495 bits (1274), Expect = e-157
Identities = 235/257 (91%), Positives = 252/257 (98%)
Frame = -2
Query: 3093 GSGAVEAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 2914
G GA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1 GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60
Query: 2913 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAG 2734
YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAG
Sbjct: 61 YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120
Query: 2733 SGWFMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 2554
SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180
Query: 2553 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASL 2374
NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+T+EEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240
Query: 2373 LLGEIKHPLETDRIQAS 2323
LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257
>gb|AAZ76594.1| polyprotein, partial [Stocky prune virus]
Length = 795
Score = 318 bits (814), Expect = 2e-88
Identities = 214/609 (35%), Positives = 319/609 (52%), Gaps = 31/609 (5%)
Frame = -2
Query: 2553 NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITREEYL 2386
+ + CG A G G G+ + ++H + ++ + G G+ +T+E+ +
Sbjct: 22 HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81
Query: 2385 EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SNAPRQATTSEI 2221
+LL D + CL E + V G L+ S+AP + +++
Sbjct: 82 GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132
Query: 2220 RKSSISADLEILTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 2050
+S IS +++ +T PAII N D R+ + D+F GM KYK +A V
Sbjct: 133 ERSLISDIVDLPC----ETVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188
Query: 2049 -EEEQKIWDLTWDSIFDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1873
+EQ+ + D IFD + +SE+ L G+ + +V STSEG+P +L
Sbjct: 189 GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248
Query: 1872 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLS 1696
R +G GK L G+PGC++++ + +++ L +P ++G++ KDER+
Sbjct: 249 RPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVARK 308
Query: 1695 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 1516
K+ KTRLFT+LP EYN LVR+YF FV++ M+ HN P KVGINP +WT L + +
Sbjct: 309 KVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYENL 368
Query: 1515 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSR------RLHLMLAATTRL 1354
+KGTNWFNGD+ RFDG+TPR +++++ RI LY R R LML A+ R
Sbjct: 369 RSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDRY 428
Query: 1353 GVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAST-------SLFFSDCVE 1195
+AG LY+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ ++ V
Sbjct: 429 AIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVH 488
Query: 1194 LAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNP-PEKCDFL 1018
AV GDDNLVSV + +S +NL +S+FL + G LK+G K++E P F+P P CDFL
Sbjct: 489 FAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFL 548
Query: 1017 KRCF-KARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRE--LFHYGDKDL 847
KR F R LAP HWVR++ Q NV+G LRE F +
Sbjct: 549 KRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEF 607
Query: 846 YCKWRRDLI 820
+ RR L+
Sbjct: 608 FHDMRRKLL 616
>ref|YP_009220374.1| polyprotein [Currant latent virus] gi|966557892|gb|ALT45950.1|
polyprotein [Currant latent virus]
Length = 2124
Score = 326 bits (835), Expect = 5e-86
Identities = 268/822 (32%), Positives = 398/822 (48%), Gaps = 40/822 (4%)
Frame = -2
Query: 3063 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVG--SLTK 2890
+++ + +L KH + F + D Y IALGG L+ HV+ + Y + ++TK
Sbjct: 1203 ELDQSVINLLKHQVVFIN-DMTKVVYNAIALGGRNFLITKHVFDLMPVANYSLYGYAITK 1261
Query: 2889 TFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGWFM--E 2716
+ NR + Q L +DLVIV+ P T F L + +L + + + + E
Sbjct: 1262 PKIWIDNRVRPKIQ-LKDRDLVIVEMPLTVPCFSSLPKDIFLKNMQEAPKQVNAVLVIAE 1320
Query: 2715 MLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2545
+ V ++ ++ +T L D Y L + + C YT DT
Sbjct: 1321 PNYEGKSVAKLVQKFQPFTNLPQVHAKDTYSCGSLGSLRMPPCYSYTF--DT-------- 1370
Query: 2544 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLLLG 2365
Y C +PL+ G G+ + + +HVV + S T G ++T +++ E
Sbjct: 1371 -YPGLCTSPLICMSG-GRCI-LLGLHVVGNMSKT-------GFSQIVTLDDFSEV----- 1415
Query: 2364 EIKHPLETDRIQASG----CL--SGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSIS 2203
PL++ + G C+ + E + + T + AP + + S IS
Sbjct: 1416 ----PLQSGTLVGEGPECYCIPTASSECYGSVTKLGKWT---GPAPYFLEKTSLVPSMIS 1468
Query: 2202 ADLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKI 2032
D++I + TEPAI+ +D RL +D + FK GMLKY A + E+++
Sbjct: 1469 KDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYAVEAHGFN----EDEEF 1520
Query: 2031 WDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 1855
++ D +F ++P C+ L++DE NG+ D +V+ TSEG+P R G
Sbjct: 1521 FEDALDRVFSEIPDF---NCQELADDEVCNGIEDDPYAEPLVMQTSEGYPFCTQRPAGAT 1577
Query: 1854 GKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERLPLSKIYQDV 1678
GK G PG + + ++ + M+ L ++G+D KDE++ SK+Y
Sbjct: 1578 GKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGIDFPKDEKVDKSKVYIKP 1637
Query: 1677 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1498
KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL +W IL + AKG N
Sbjct: 1638 KTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLSNEWGILQFALSAKGEN 1697
Query: 1497 WFNGDYSRFDGVTPRCLLIEIARRI--------TLLYND-----NQGSRRLHLMLAATTR 1357
WFNGDYSRFDG+TPR +L+ I +RI +L D N R LM A+TR
Sbjct: 1698 WFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSINGDLARSLLMDMASTR 1757
Query: 1356 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTS-------LFFSDCV 1198
G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ + ++ F V
Sbjct: 1758 YGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYMSICKKSNDMDLYPLYSFKQLV 1817
Query: 1197 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 1018
AV GDDN+VSV ++ FNL L+ FL D+G TLK+G+DK++EIL F P K DFL
Sbjct: 1818 SYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADKDEEILSPFYPISKVDFL 1877
Query: 1017 KRCFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCK 838
KR F ++P LHWVR+ +N +FH + Y
Sbjct: 1878 KRKFTVLQGHVVSPLNRINITERLHWVRKGMTEVDAIVENCQSAAFEAVFH--GEHYYKD 1935
Query: 837 WRRDLIDLCSKN--RVPHPTTYSFEELERSWLSGRSVASIFE 718
+ C+KN V PT F++ LSG S A+ +
Sbjct: 1936 ICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 1974
>gb|AAY56484.1| unknown, partial [Strawberry latent ringspot virus]
Length = 173
Score = 281 bits (718), Expect = 1e-83
Identities = 130/164 (79%), Positives = 141/164 (85%), Gaps = 1/164 (0%)
Frame = -2
Query: 672 VAPGVHIVPVQQCLKWRAGEVPNVVWCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRN 493
VAP VHIVPVQ CLKW+ EVP VVWCGPNCPNQL+N + CF IQAPQGS+YPLRNTV+N
Sbjct: 3 VAPNVHIVPVQTCLKWKPSEVPTVVWCGPNCPNQLKNTNGCFFIQAPQGSRYPLRNTVKN 62
Query: 492 LLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTV 313
LLK+VHQR DEVYFTG+LNQSLVHWVAAFYASMYRESF HS YM AYFGDNDAGLLE+
Sbjct: 63 LLKRVHQRSDEVYFTGALNQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDAGLLEAVT 122
Query: 312 AAKGW*VVL-PS*AFLLENIPGPEGH*LGKPVNFLCHYHGSTWF 184
AAKGW L S FL ENIPGP+GH LGKPVNF+CHYHG+TWF
Sbjct: 123 AAKGWCAFLFFSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWF 166
>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
Length = 709
Score = 301 bits (770), Expect = 2e-83
Identities = 198/509 (38%), Positives = 281/509 (55%), Gaps = 26/509 (5%)
Frame = -2
Query: 2166 TEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIF-DL 1999
TEPAI+ +D RL +++ D F GM KY A +E++++++ D +F ++
Sbjct: 52 TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107
Query: 1998 PGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGC 1819
P C LS D+ NG+ D+ G+V+ T+EG+P R G GK G PG
Sbjct: 108 PMFT---CEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164
Query: 1818 YTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1645
+ + N L + +++ L ++G+D KDE++ SK+Y KTRLFTILP++
Sbjct: 165 WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223
Query: 1644 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1465
YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG
Sbjct: 224 YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283
Query: 1464 VTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTRLGVAGIGLYRV 1324
+TPR +L I +RI+ Y + N R LM +TR G+ L+ V
Sbjct: 284 ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343
Query: 1323 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---TSLF----FSDCVELAVVGDDNLV 1165
+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V AV GDDNL+
Sbjct: 344 TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403
Query: 1164 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 985
SV + FNL +S L + G TLK+G+DKN+EIL F P EK DFLKR F
Sbjct: 404 SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463
Query: 984 LAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSK 805
+AP LHWVR+ + +A AT N + L E +G +LY R I+ K
Sbjct: 464 VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGKIEKACK 520
Query: 804 NRVPHPTTYSFEELERSWLSGRSVASIFE 718
+ +++ +L+G S A +
Sbjct: 521 VKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549
>gb|AHN52254.1| polyprotein, partial [Currant latent virus]
Length = 721
Score = 301 bits (770), Expect = 2e-83
Identities = 205/538 (38%), Positives = 284/538 (52%), Gaps = 27/538 (5%)
Frame = -2
Query: 2250 APRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 2080
AP + + S IS D++I + TEPAI+ +D RL +D + FK GMLKY
Sbjct: 50 APYFLEKTSLVPSMISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYA 105
Query: 2079 AVAADMSPVTEEEQKIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVS 1903
A + E+++ ++ D +F ++P C+ L++DE NG+ D +V+
Sbjct: 106 VEAHGFN----EDEEFFEDALDRVFSEIPDF---NCQELADDEVCNGIEDDPYAEPLVMQ 158
Query: 1902 TSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLD 1726
TSEG+P R G GK G PG + + ++ + M+ L ++G+D
Sbjct: 159 TSEGYPFCTQRPAGATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGID 218
Query: 1725 TAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLG 1546
KDE++ SK+Y KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL
Sbjct: 219 FPKDEKVDKSKVYIKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLS 278
Query: 1545 YDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI--------TLLYND----- 1405
+W IL + AKG NWFNGDYSRFDG+TPR +L+ I +RI +L D
Sbjct: 279 NEWGILQFALSAKGENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSI 338
Query: 1404 NQGSRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 1225
N R LM A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ +
Sbjct: 339 NGDLARSLLMDMASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYRSICKK 398
Query: 1224 TS-------LFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKN 1066
++ F V AV GDDN+VSV ++ FNL L+ FL D+G TLK+G+DK+
Sbjct: 399 SNDMDLYPLYSFKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADKD 458
Query: 1065 KEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEG 886
+EIL F P K DFLKR F ++P LHWVR+ +N
Sbjct: 459 EEILSPFYPISKVDFLKRKFTVLQGHVVSPLNRINITERLHWVRKGMTEVDAIVENCQSA 518
Query: 885 FLRELFHYGDKDLYCKWRRDLIDLCSKN--RVPHPTTYSFEELERSWLSGRSVASIFE 718
+FH + Y + C+KN V PT F++ LSG S A+ +
Sbjct: 519 AFEAVFH--GEHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 571
>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
Length = 707
Score = 296 bits (757), Expect = 8e-82
Identities = 190/476 (39%), Positives = 262/476 (55%), Gaps = 26/476 (5%)
Frame = -2
Query: 2214 SSISADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEE 2044
S IS +++ +R TEPAI+ RD RL D D+F +GM KY A + +E
Sbjct: 40 SLISTSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DE 91
Query: 2043 EQKIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRK 1867
+ ++++ D +F ++P C L+ D+ NG+ D G+V+ T+EG+P R
Sbjct: 92 DLEVFEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRP 148
Query: 1866 NGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKI 1690
G +GK G PG + + + + + + + ++G+D KDE++ SK+
Sbjct: 149 AGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKV 208
Query: 1689 YQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHA 1510
Y KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++ +
Sbjct: 209 YIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRS 268
Query: 1509 KGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLA 1369
KGTNWFNGDYSRFDG+TPR +L I +RI YN+ N R L
Sbjct: 269 KGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDM 328
Query: 1368 ATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FF 1210
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F
Sbjct: 329 ASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSF 388
Query: 1209 SDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEK 1030
V A GDDNLVSV +V FNL K++ LA+ G TLK+G+DKN+EIL F P EK
Sbjct: 389 RQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEK 448
Query: 1029 CDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRE-LFH 865
DFLKR F +AP LHW+R+ + A AT N E LFH
Sbjct: 449 VDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503
>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple latent
spherical virus]
Length = 2079
Score = 311 bits (798), Expect = 1e-81
Identities = 261/820 (31%), Positives = 396/820 (48%), Gaps = 38/820 (4%)
Frame = -2
Query: 3063 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKV-GSLTKT 2887
D + +L KH + + ++ Y IALG L HVW + + Y + G
Sbjct: 1150 DQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRNFLFTKHVWDLMPTCNYGLFGYAIAK 1208
Query: 2886 FPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLS-SHDPFMAGSGWFM-EM 2713
+N +L +DLV+V P + F L + +L + + P +A + + E
Sbjct: 1209 NKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSALPKDIFLSNLAEAPKVANAALVVSEP 1268
Query: 2712 LFRDNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFF 2542
L+ V ++ ++ + L + D Y L + C YT DT G
Sbjct: 1269 LYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLGSKPMPACYSYTF--DTFAGL----- 1321
Query: 2541 YVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEASLL--- 2371
C +PL++ G G+ + + +HV D G ++T E++ + +
Sbjct: 1322 ----CTSPLISMDG-GRCV-LLGLHVA-------GDKSKMGYAQIVTLEDFSDINFSEKV 1368
Query: 2370 -LGEIKHPLETDRIQASG--CLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISA 2200
G + + T R ++ G CL G ++ + F E + T + I
Sbjct: 1369 GQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFLE---------NSSLTPSLIHDCIDI 1418
Query: 2199 DLEILTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIW 2029
D+ TEPAI+ +D RL +++ D F GM KY A +E+++++
Sbjct: 1419 DM--------TTEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELF 1466
Query: 2028 DLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAG 1852
+ D +F ++P C LS D+ NG+ D+ G+V+ T+EG+P R G G
Sbjct: 1467 EDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTG 1523
Query: 1851 KERFLLGLPGCYTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 1678
K G PG + + N L + +++ L ++G+D KDE++ SK+Y
Sbjct: 1524 KTWLFAGSPGDWHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQ 1582
Query: 1677 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1498
KTRLFTILP++YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTN
Sbjct: 1583 KTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTN 1642
Query: 1497 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTR 1357
WFNGDYSRFDG+TPR +L I +RI+ Y + N R LM +TR
Sbjct: 1643 WFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTR 1702
Query: 1356 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---TSLF----FSDCV 1198
G+ L+ V+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V
Sbjct: 1703 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLV 1762
Query: 1197 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 1018
AV GDDNL+SV + FNL +S L + G TLK+G+DKN+EIL F P EK DFL
Sbjct: 1763 SYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFL 1822
Query: 1017 KRCFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCK 838
KR F +AP LHWVR+ + +A AT N + L E +G +LY
Sbjct: 1823 KRRFTTLQGHIVAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYN 1879
Query: 837 WRRDLIDLCSKNRVPHPTTYSFEELERSWLSGRSVASIFE 718
R I+ K + +++ +L+G S A +
Sbjct: 1880 DLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSYAKAIQ 1919
Score = 68.2 bits (165), Expect = 2e-07
Identities = 68/237 (28%), Positives = 97/237 (40%), Gaps = 10/237 (4%)
Frame = -2
Query: 4602 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKA----DRLILQMDSRKVPGAYIT 4435
DF W V T S+ L P +RL+ +R D+ + K P +T
Sbjct: 605 DFLEWAKRVERYAGDTYDSMILNPADRLRIIRELVDQQVGFQKAFFNPRIASKAPRLMLT 664
Query: 4434 HFNNLLQSLDRALVECQQALS----VGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLD 4270
F Q L L +C ALS R P I LY ++ GKS+ L + +LD
Sbjct: 665 EF----QRLSTMLRDCHSALSRAALFDMQRVPPFWIHLYSENGGTGKSMAMMPLGNYLLD 720
Query: 4269 SLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXX 4090
S++ +T R +RN + F + Y +Q L D+FGA + + DE ++
Sbjct: 721 SIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDEFGAAPKTDYMDEVTMLDLVSPNPLTLN 780
Query: 4089 XXXLEAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEGGRY 3922
L K N TS + TAN+ P + F RR ILAEV +G Y
Sbjct: 781 MAALGDK-NIMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRHILAEVVLAQGKPY 836
>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
Length = 2235
Score = 311 bits (798), Expect = 1e-81
Identities = 254/772 (32%), Positives = 366/772 (47%), Gaps = 34/772 (4%)
Frame = -2
Query: 3078 EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--V 2905
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360
Query: 2904 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGW 2725
G + + +L +DLVIV P + F L + +L + +
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420
Query: 2724 FM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTG 2560
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475
Query: 2559 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYLEA 2380
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFSDV 1520
Query: 2379 SLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSIS 2203
+L + P E + S C A T LE + + S IS
Sbjct: 1521 ALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTT---------LIPSLIS 1571
Query: 2202 ADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQKI 2032
+++ +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1572 TSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623
Query: 2031 WDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 1855
++ D +F ++P C L+ D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1624 FEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680
Query: 1854 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 1678
GK G PG + + + + + L ++G+D KDE++ SK+Y
Sbjct: 1681 GKSWLFAGAPGDWHIVPGSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKP 1740
Query: 1677 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1498
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1741 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1800
Query: 1497 WFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAATTR 1357
WFNGDYSRFDG+TPR +L I +RI YN+ N R LM A+TR
Sbjct: 1801 WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTR 1860
Query: 1356 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FFSDCV 1198
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1861 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1920
Query: 1197 ELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFL 1018
A GDDNLVSV +V FNL K++ LA+ G TLK+G+DKN+EIL F P EK DFL
Sbjct: 1921 AYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1980
Query: 1017 KRCFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRE-LFH 865
KR F +AP LHW+R+ + A AT N E LFH
Sbjct: 1981 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031
Score = 72.4 bits (176), Expect = 1e-08
Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
Frame = -2
Query: 4602 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 4435
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 766 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 825
Query: 4434 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 4258
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 826 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNYMLDAIGE 885
Query: 4257 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 4078
+T R +RN + F + Y+++ L D+FGA + + DE ++ +
Sbjct: 886 PKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 945
Query: 4077 EAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEG 3931
K NT TS + TAN+ P + F RR ILAEV V G
Sbjct: 946 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 994
>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
gi|82002707|sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1
polyprotein; AltName: Full=Genome polyprotein B; AltName:
Full=P1; Contains: RecName: Full=Protease cofactor;
Contains: RecName: Full=Putative helicase; AltName:
Full=Membrane-binding protein; AltName: Full=NTP-binding
protein; Short=NTB; Contains: RecName: Full=Viral
genome-linked protein; AltName: Full=VPg; Contains:
RecName: Full=Picornain 3C-like protease; Short=3C-like
protease; Contains: RecName: Full=RNA-directed RNA
polymerase gi|50399319|emb|CAF21713.1| polyprotein
[Cherry rasp leaf virus]
Length = 2250
Score = 306 bits (783), Expect = 8e-80
Identities = 252/774 (32%), Positives = 367/774 (47%), Gaps = 36/774 (4%)
Frame = -2
Query: 3078 EAKTQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 2911
E ++ L +L KH + + + Y IALGG L+ HVW +L C Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375
Query: 2910 KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGS 2731
+ + C +L +DLVIV P + F L + +L + +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433
Query: 2730 GWFM--EMLFRDNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 2566
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490
Query: 2565 TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITREEYL 2386
Y C +PL+A G G+ + I +HVV D G ++T +++
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533
Query: 2385 EASLLLGEIKHPLETD-RIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSS 2209
+ +L + P E + S C A T LE ++ + S
Sbjct: 1534 DVALSDKVGQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTS---------LIPSL 1584
Query: 2208 ISADLEILTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEQ 2038
IS +++ +R TEPAI+ RD RL D D+F +GM KY A + +E+
Sbjct: 1585 ISTSIDV----ERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636
Query: 2037 KIWDLTWDSIF-DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 1861
++++ D +F ++P C L+ D+ NG+ D G+V+ T+EG+P R G
Sbjct: 1637 EVFEDALDRVFLEIPE---HACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693
Query: 1860 EAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKIYQ 1684
+GK G PG + + + + + + + ++G+D KDE++ SK+Y
Sbjct: 1694 ASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYI 1753
Query: 1683 DVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKG 1504
KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++ +KG
Sbjct: 1754 KPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKG 1813
Query: 1503 TNWFNGDYSRFDGVTPRCLLIEIARRITLLYND-------------NQGSRRLHLMLAAT 1363
TNWFNGDYSRFDG+TPR +L I +RI YN+ N R L A+
Sbjct: 1814 TNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAS 1873
Query: 1362 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSL-------FFSD 1204
TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F
Sbjct: 1874 TRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ 1933
Query: 1203 CVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCD 1024
V A GDDNLVSV +V FNL K++ LA+ G TLK+G+DKN+EIL F P EK D
Sbjct: 1934 MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVD 1993
Query: 1023 FLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRE-LFH 865
FLKR F +AP LHW+R+ + A AT N E LFH
Sbjct: 1994 FLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046
Score = 74.7 bits (182), Expect = 2e-09
Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
Frame = -2
Query: 4602 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 4435
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 781 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 840
Query: 4434 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 4258
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 841 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 900
Query: 4257 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 4078
+T R +RN + F + Y++Q L D+FGA + + DE ++ +
Sbjct: 901 PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 960
Query: 4077 EAKGNTCCTSDFVFITANQAGLTPGAVVHCK-KAFENRRLILAEVTAVEG 3931
K NT TS + TAN+ P + F RR ILAEV V G
Sbjct: 961 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 1009
>ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523|gb|AFI74271.1|
polyprotein [Arracacha virus B]
Length = 2314
Score = 299 bits (765), Expect = 1e-77
Identities = 255/793 (32%), Positives = 378/793 (47%), Gaps = 39/793 (4%)
Frame = -2
Query: 3054 SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 2881
SEL S KH+ +I + Y + + G + L V HV+ + G Y+ VG
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288
Query: 2880 FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDP--------FMAGSGW 2725
F NR + + L KDL IV T F L K LL + F S
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVPPFAPLA--KRLLFDEEEKLPRQALGFFCHSEP 1346
Query: 2724 FMEMLFRDNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2545
++E L R +G+ ++ + T+ + D+ + L K +Y + G
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398
Query: 2544 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITRE-EYLEASLLL 2368
CG L+ G+KI +H + K +I + ++ ++ E S +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446
Query: 2367 GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSNAPRQATTSEIRKSSISADLEI 2188
GE + L C +GE A EGL P T + + S IS+DL+
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496
Query: 2187 LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDL 2023
+ PAI+H+RD R+ + D FK GMLKY A E+ Q D
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556
Query: 2022 TWDSIFDL-------PGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 1864
+ I DL CR+L+E++ LNG + +V T+EG+P R
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616
Query: 1863 GEAGKERFLLGLPGCYTLNRDLPMYQRILDM-DELCATTIPCIVGLDTAKDERLPLSKIY 1687
G++GK L G+PG ++L ++ P+ I + D L ++G+D KDE++ +K+
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676
Query: 1686 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 1507
K RLFTILP YN +VR+++ FVA LM+ HN P KVG+N +W L ++ A
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736
Query: 1506 GTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQ-----GSRRLHLMLA-------AT 1363
G NWFNGDYSRFDG+TPRC+L +A RI+ Y ++ +++ +A A
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796
Query: 1362 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---STSLFFSDCVEL 1192
+R G+AG+G+Y+VS GIPSGF LTVIVNSLVN F + +++ +M+ + +F+ V
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856
Query: 1191 AVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKR 1012
AV GDDNLVSV E + +NLK ++ FL FG TLK+G++K++EIL F P E DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916
Query: 1011 CFKARGDRYLAPXXXXXXXXXLHWVRETNVSNAVATQNNVEGFLRELFHYGDKDLYCKWR 832
F L LHWVR+ A +N L E +G + Y R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974
Query: 831 RDLIDLCSKNRVP 793
L+ + K ++P
Sbjct: 1975 SKLVRVLGKRKLP 1987
Score = 63.2 bits (152), Expect = 6e-06
Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 4/240 (1%)
Frame = -2
Query: 4611 VGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKD--KADRLILQMDSRKVPGAYI 4438
V DFQ W V + T + + P +RL+ LR D K IL M P
Sbjct: 669 VDKDFQTWSEGVRDYAFETWKAAEIPPIQRLEILRGLDDTRKDFEKILMMPGVNPPEYLR 728
Query: 4437 THFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGD-SHVGKSVCSQYLIDDVLDSLD 4261
F+ +L + E +A R P I+LY GKS C+ L + +LDS +
Sbjct: 729 RCFDACSTALRERIAELSRAAMFDISRIPPFWIYLYSARGGTGKSTCAIPLANKILDSAN 788
Query: 4260 YAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXX 4081
+ R+ +RN + S+ + Y +Q ++ D+FGA E + II
Sbjct: 789 EPKGARICTRNAASSYLNGYAHQPCLIMDEFGAQGEHHATPDERIILDYVSATPMIPNMA 848
Query: 4080 LEAKGNTCCTSDFVFITANQAGLTPGA-VVHCKKAFENRRLILAEVTAVEGGRYRDRYRF 3904
S + T+N P + + K F RR I AEV A G ++ F
Sbjct: 849 AVNDKTIMFNSKLIISTSNFPNGNPKVDLGNNKTGFLRRRKIFAEVAAPLPGEQFPQFSF 908
>gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
Length = 2223
Score = 278 bits (712), Expect = 2e-71
Identities = 206/582 (35%), Positives = 303/582 (52%), Gaps = 27/582 (4%)
Frame = -2
Query: 2253 NAPRQATTSEIRKSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAV 2074
N P + T +RKS I + + G TEP+I+ + D R D + KG+ K+
Sbjct: 1158 NVPHKTT---LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNET 1213
Query: 2073 AADMSPVTEE---EQKIWDLTWDSI-FDLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVV 1906
A T E + DL + + D+PGG K + SE E LNG+ G+ Y M +
Sbjct: 1214 ACCFDHETVEVALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDM 1270
Query: 1905 STSEGWPEVLNRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIV 1735
ST+ G+P L+ E GK + +L G PG Y L+R+ P++ +++DE + I IV
Sbjct: 1271 STACGYPYTLS----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIV 1326
Query: 1734 GLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGIN 1555
+ AKDERLPL KIYQ KTRLFTILP YN LVRKYF F A LM+ HN +P KVGIN
Sbjct: 1327 SCECAKDERLPLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGIN 1386
Query: 1554 PLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDNQGSR----R 1387
P G +WT+L K F+ DYS FDG P + + Y D GS R
Sbjct: 1387 PSGLEWTVLAKNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLAR 1446
Query: 1386 LHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM--------- 1234
L++ A+ L + G L+RV GG+PSGF+LTV+ NSL+N F +R+++E +
Sbjct: 1447 HALLMMASNHLTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITR 1506
Query: 1233 -MASTSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEI 1057
M T FS+ + +A+ GDDNLV+V + ++L ++ L +K+G DKN+++
Sbjct: 1507 TMGMTQRTFSE-LFIAIYGDDNLVAV-PLHLRWYSLPAIAEELQKVNVVIKNGLDKNQDV 1564
Query: 1056 LP-EFNPPEKCDFLKRCFKARG-DRYLAPXXXXXXXXXLHWVRETNVSNAV-ATQNNVEG 886
+F P + FL R F+ Y AP L W+R T + + A N+EG
Sbjct: 1565 AQVQFQPLGELTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEG 1624
Query: 885 FLRELFHYGDKDLYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLS---GRSVASIFEK 715
LRE + +G K ++ +R ++ + ++ R+P T FEELER W+S + ++ E
Sbjct: 1625 SLREAYMHG-KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEP 1683
Query: 714 EEPEVIVIRDSASDVAPGVHIVPVQQCLKWRAGEVPNVVWCG 589
E E++ + P V + V+Q + VP V +CG
Sbjct: 1684 SEHELLSL--------PTVEQLTVEQYSREINEFVPGVHFCG 1717
Score = 91.7 bits (226), Expect = 1e-14
Identities = 91/359 (25%), Positives = 146/359 (40%), Gaps = 16/359 (4%)
Frame = -2
Query: 4500 KDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDS 4321
KDKA + V FN + LD+ L + Q VG++R P C+ LYG
Sbjct: 344 KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403
Query: 4320 HVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHF 4141
GK++ ++I+D+L+ L T R++S + D +WS Y +Q AVL DDFG + + +
Sbjct: 404 GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAANQ 463
Query: 4140 DEA--EIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENR 3967
++ + I +E KG T TS ++F+T+NQA V A + R
Sbjct: 464 NDGVKDFIFMKSSAPMSLSMAAVEEKG-TQFTSRYIFLTSNQATPPRTVGVMDLGAIQRR 522
Query: 3966 RLILAEV-----------TAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTV 3820
R +L EV T V+ FT+ +P+ R D Y + L
Sbjct: 523 RNLLIEVERHGPIDETCETPVQ------NITFTVRDPLDPHRRIDGLSDKTYLEILDIIE 576
Query: 3819 NQSKQHFSEQVDLRDAPHTQIFXXXXXXXXXXXEGFRVAGIKVPFTMLKNLSGDQLTYYS 3640
+ H+++ L+ GI+ + S D+LT
Sbjct: 577 EACRNHWAKDAWLKTFG---------------------KGIERKLQAQVDTSDDELTDSD 615
Query: 3639 EEKMMEVTETLTPEDADIIRSRLDPGVITQQLQVLLPKAAY---VNLKNHFGLGTDPFE 3472
+ M D I R +I++ ++ + AY +NL+N F +GT P E
Sbjct: 616 DPLMPPTRGGQEYNDNQIKRIE----IISRSFRLSSFQCAYSGLLNLENPFEVGTLPHE 670
>gb|AAY32935.1| RNA-dependent RNA polymerase, partial [Radish mosaic virus]
Length = 709
Score = 253 bits (647), Expect = 2e-67
Identities = 163/453 (35%), Positives = 244/453 (53%), Gaps = 16/453 (3%)
Frame = -2
Query: 2160 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMS-----PVTEEEQKIWDLTWDSIF 2005
P+I+ + D RL D FK G+LKYK + V EE ++ W +
Sbjct: 58 PSILSSDDPRLEVSGHTDYDPFKAGILKYKDPMGVVDNKLLIEVCEEIEQSWLDCKEE-- 115
Query: 2004 DLPGGIGKKCRLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1825
G+ +S ++ +NGV + + ++TSEG+P +L+R +GE GK RF+ G
Sbjct: 116 ------GETFEEVSLEQAINGVRDVDYMDRIPLATSEGFPHILSRSHGEKGKIRFVEGDS 169
Query: 1824 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1645
L + + + M+ +P ++G++ KDE+LP KI++ KTR F+ILPME
Sbjct: 170 EAMMLIPGTSVAEALEIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPME 229
Query: 1644 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1465
YN LVR+ F +FV +M+ NV+P +VGINP G +WT L R+ KG N DYS FDG
Sbjct: 230 YNLLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDG 289
Query: 1464 VTPRCLLIEIARRITLLYNDNQGSRRL--HLMLAATTRLGVAGIGLYRVSGGIPSGFALT 1291
+ + ++ ++ I ++ S+R HL++A +R + +++V GIPSGF LT
Sbjct: 290 LLSKQVMKAMSDMINSFCGGSESSKRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLT 349
Query: 1290 VIVNSLVNHFLVRWSWEHMMAS------TSLFFSDCVELAVVGDDNLVSVKEVAASDFNL 1129
VI NS+ N L+R+S++ ++ S S+ F + V + V GDDNL+SV EV F+
Sbjct: 350 VICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDG 409
Query: 1128 KKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXX 949
K+L FLA T+ DG DK L +F E CDFLKR FK RG + AP
Sbjct: 410 KRLKEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQ 468
Query: 948 LHWVRETNVSNAVATQNNVEGFLRELFHYGDKD 850
LH+V N+ A + N+ LRELF + K+
Sbjct: 469 LHYVNANNLEKHEAYKTNLVTVLRELFMWDKKE 501