BLASTX nr result
ID: Rehmannia28_contig00000069
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00000069
(384 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_011089882.1| PREDICTED: ribulose bisphosphate carboxylase... 103 2e-25
gb|KDP20120.1| hypothetical protein JCGZ_05889 [Jatropha curcas] 102 4e-25
ref|NP_001295748.1| ribulose bisphosphate carboxylase small chai... 102 4e-25
gb|EYU38175.1| hypothetical protein MIMGU_mgv1a014707mg [Erythra... 102 5e-25
ref|XP_012842535.1| PREDICTED: ribulose bisphosphate carboxylase... 102 6e-25
ref|XP_012836597.1| PREDICTED: ribulose bisphosphate carboxylase... 102 6e-25
ref|XP_012836591.1| PREDICTED: ribulose bisphosphate carboxylase... 102 6e-25
gb|AEA48975.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 100 2e-24
gb|ABR26002.1| ribulose bisphosphate carboxylase small chain c, ... 97 4e-24
gb|ABR25937.1| ribulose bisphosphate carboxylase small chain c, ... 97 6e-24
gb|ABR26086.1| ribulose bisphosphate carboxylase small chain c, ... 97 1e-23
gb|AAF06098.1| ribulose 1,5-bisphosphate carboxylase small chain... 99 1e-23
gb|AAF06100.1| ribulose 1,5-bisphosphate carboxylase small chain... 99 1e-23
dbj|BAK23964.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ... 98 1e-23
dbj|BAK23963.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ... 98 1e-23
ref|XP_002532149.1| PREDICTED: ribulose bisphosphate carboxylase... 99 2e-23
pdb|1WDD|S Chain S, Crystal Structure Of Activated Rice Rubisco ... 97 2e-23
emb|CAA59218.1| ribulose-bisphosphate carboxylase [synthetic con... 97 2e-23
pdb|3AXM|S Chain S, Structure Of Rice Rubisco In Complex With 6p... 97 2e-23
ref|XP_007151771.1| hypothetical protein PHAVU_004G073400g, part... 96 3e-23
>ref|XP_011089882.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic-like [Sesamum indicum]
Length = 181
Score = 103 bits (256), Expect = 2e-25
Identities = 49/56 (87%), Positives = 50/56 (89%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPAKY 217
TMWKLPMFGCTDAVQVL ELDEAIKAHP+GFIRIIGFDN RQVQ SFIAYKP Y
Sbjct: 126 TMWKLPMFGCTDAVQVLLELDEAIKAHPNGFIRIIGFDNARQVQCTSFIAYKPPGY 181
>gb|KDP20120.1| hypothetical protein JCGZ_05889 [Jatropha curcas]
Length = 181
Score = 102 bits (254), Expect = 4e-25
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTDAVQVLNELDEAIKAHP+GF+RIIGFD+ RQVQ SFIAYKP
Sbjct: 126 TMWKLPMFGCTDAVQVLNELDEAIKAHPNGFVRIIGFDSYRQVQCISFIAYKP 178
>ref|NP_001295748.1| ribulose bisphosphate carboxylase small chain, chloroplastic-like
[Jatropha curcas] gi|284433770|gb|ADB85091.1| ribulose
1,5-bisphosphate carboxylase small subunit [Jatropha
curcas]
Length = 181
Score = 102 bits (254), Expect = 4e-25
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTDAVQVLNELDEAIKAHP+GF+RIIGFD+ RQVQ SFIAYKP
Sbjct: 126 TMWKLPMFGCTDAVQVLNELDEAIKAHPNGFVRIIGFDSYRQVQCISFIAYKP 178
>gb|EYU38175.1| hypothetical protein MIMGU_mgv1a014707mg [Erythranthe guttata]
Length = 174
Score = 102 bits (253), Expect = 5e-25
Identities = 47/56 (83%), Positives = 53/56 (94%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPAKY 217
TMWKLPMFGCTDAVQV+NELDEAIKA+P+GFIRIIGF+N++QVQ SFIAYKPA Y
Sbjct: 119 TMWKLPMFGCTDAVQVVNELDEAIKAYPEGFIRIIGFNNLKQVQDISFIAYKPAGY 174
>ref|XP_012842535.1| PREDICTED: ribulose bisphosphate carboxylase small chain 2,
chloroplastic-like [Erythranthe guttata]
gi|604347158|gb|EYU45444.1| hypothetical protein
MIMGU_mgv1a014737mg [Erythranthe guttata]
Length = 180
Score = 102 bits (253), Expect = 6e-25
Identities = 47/56 (83%), Positives = 53/56 (94%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPAKY 217
TMWKLPMFGCTDAVQV+NELDEAIKA+P+GFIRIIGF+N++QVQ SFIAYKPA Y
Sbjct: 125 TMWKLPMFGCTDAVQVVNELDEAIKAYPEGFIRIIGFNNLKQVQDISFIAYKPAGY 180
>ref|XP_012836597.1| PREDICTED: ribulose bisphosphate carboxylase small chain 2,
chloroplastic-like [Erythranthe guttata]
gi|604333868|gb|EYU38174.1| hypothetical protein
MIMGU_mgv1a014707mg [Erythranthe guttata]
Length = 181
Score = 102 bits (253), Expect = 6e-25
Identities = 47/56 (83%), Positives = 53/56 (94%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPAKY 217
TMWKLPMFGCTDAVQV+NELDEAIKA+P+GFIRIIGF+N++QVQ SFIAYKPA Y
Sbjct: 126 TMWKLPMFGCTDAVQVVNELDEAIKAYPEGFIRIIGFNNLKQVQDISFIAYKPAGY 181
>ref|XP_012836591.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic-like [Erythranthe guttata]
gi|604333866|gb|EYU38172.1| hypothetical protein
MIMGU_mgv1a014686mg [Erythranthe guttata]
Length = 181
Score = 102 bits (253), Expect = 6e-25
Identities = 47/56 (83%), Positives = 53/56 (94%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPAKY 217
TMWKLPMFGCTDAVQV+NELDEAIKA+P+GFIRIIGF+N++QVQ SFIAYKPA Y
Sbjct: 126 TMWKLPMFGCTDAVQVVNELDEAIKAYPEGFIRIIGFNNLKQVQDISFIAYKPAGY 181
>gb|AEA48975.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Rosa
roxburghii]
Length = 179
Score = 100 bits (250), Expect = 2e-24
Identities = 47/56 (83%), Positives = 49/56 (87%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPAKY 217
TMWKLPMFGCTD+ QVL EL+EA KAHPDGFIRIIGFDNVRQVQ SFIAYKP Y
Sbjct: 124 TMWKLPMFGCTDSAQVLKELEEAKKAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 179
>gb|ABR26002.1| ribulose bisphosphate carboxylase small chain c, partial [Oryza
sativa Indica Group]
Length = 73
Score = 96.7 bits (239), Expect = 4e-24
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTDA QVL EL+EA KA+PD F+RIIGFDNVRQVQ+ SFIAYKP
Sbjct: 12 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 64
>gb|ABR25937.1| ribulose bisphosphate carboxylase small chain c, partial [Oryza
sativa Indica Group]
Length = 85
Score = 96.7 bits (239), Expect = 6e-24
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTDA QVL EL+EA KA+PD F+RIIGFDNVRQVQ+ SFIAYKP
Sbjct: 24 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 76
>gb|ABR26086.1| ribulose bisphosphate carboxylase small chain c, partial [Oryza
sativa Indica Group]
Length = 103
Score = 96.7 bits (239), Expect = 1e-23
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTDA QVL EL+EA KA+PD F+RIIGFDNVRQVQ+ SFIAYKP
Sbjct: 42 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 94
>gb|AAF06098.1| ribulose 1,5-bisphosphate carboxylase small chain precursor
[Manihot esculenta] gi|6272551|gb|AAF06101.1| ribulose
1,5-bisphosphate carboxylase small chain precursor
[Manihot esculenta]
Length = 184
Score = 99.0 bits (245), Expect = 1e-23
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTD+ QVL ELDE IKAHPDGF RIIGFDNVRQVQ SFIAYKP
Sbjct: 127 TMWKLPMFGCTDSSQVLKELDELIKAHPDGFARIIGFDNVRQVQCISFIAYKP 179
>gb|AAF06100.1| ribulose 1,5-bisphosphate carboxylase small chain precursor
[Manihot esculenta]
Length = 184
Score = 99.0 bits (245), Expect = 1e-23
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTD+ QVL ELDE IKAHPDGF RIIGFDNVRQVQ SFIAYKP
Sbjct: 127 TMWKLPMFGCTDSSQVLKELDELIKAHPDGFARIIGFDNVRQVQCISFIAYKP 179
>dbj|BAK23964.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[synthetic construct]
Length = 170
Score = 98.2 bits (243), Expect = 1e-23
Identities = 45/54 (83%), Positives = 49/54 (90%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPA 223
TMWKLPMFGCTDA QVL EL+EA KA+PD F+RIIGFDNVRQVQ+ SFIAYKPA
Sbjct: 114 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPA 167
>dbj|BAK23963.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[synthetic construct]
Length = 170
Score = 98.2 bits (243), Expect = 1e-23
Identities = 45/54 (83%), Positives = 49/54 (90%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPA 223
TMWKLPMFGCTDA QVL EL+EA KA+PD F+RIIGFDNVRQVQ+ SFIAYKPA
Sbjct: 114 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPA 167
>ref|XP_002532149.1| PREDICTED: ribulose bisphosphate carboxylase small chain,
chloroplastic [Ricinus communis]
gi|223528159|gb|EEF30223.1| Ribulose bisphosphate
carboxylase small chain, chloroplast precursor, putative
[Ricinus communis]
Length = 185
Score = 98.6 bits (244), Expect = 2e-23
Identities = 45/56 (80%), Positives = 50/56 (89%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPAKY 217
TMWKLPMFGC+DAVQVL ELDEAIKA+P+ F+RIIGFDNVRQVQ SFIAYKP +
Sbjct: 127 TMWKLPMFGCSDAVQVLKELDEAIKAYPNSFVRIIGFDNVRQVQCISFIAYKPPSF 182
>pdb|1WDD|S Chain S, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-bisphosphate
gi|56966765|pdb|1WDD|W Chain W, Crystal Structure Of
Activated Rice Rubisco Complexed With 2-
Carboxyarabinitol-1,5-bisphosphate
Length = 128
Score = 96.7 bits (239), Expect = 2e-23
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTDA QVL EL+EA KA+PD F+RIIGFDNVRQVQ+ SFIAYKP
Sbjct: 67 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 119
>emb|CAA59218.1| ribulose-bisphosphate carboxylase [synthetic construct]
gi|77554374|gb|ABA97170.1| Ribulose bisphosphate
carboxylase small chain A, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
Length = 128
Score = 96.7 bits (239), Expect = 2e-23
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTDA QVL EL+EA KA+PD F+RIIGFDNVRQVQ+ SFIAYKP
Sbjct: 67 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 119
>pdb|3AXM|S Chain S, Structure Of Rice Rubisco In Complex With 6pg
gi|383875293|pdb|3AXM|T Chain T, Structure Of Rice
Rubisco In Complex With 6pg gi|383875295|pdb|3AXM|U
Chain U, Structure Of Rice Rubisco In Complex With 6pg
gi|383875297|pdb|3AXM|V Chain V, Structure Of Rice
Rubisco In Complex With 6pg gi|383875299|pdb|3AXM|W
Chain W, Structure Of Rice Rubisco In Complex With 6pg
gi|383875301|pdb|3AXM|X Chain X, Structure Of Rice
Rubisco In Complex With 6pg gi|383875303|pdb|3AXM|Y
Chain Y, Structure Of Rice Rubisco In Complex With 6pg
gi|383875305|pdb|3AXM|Z Chain Z, Structure Of Rice
Rubisco In Complex With 6pg
Length = 129
Score = 96.7 bits (239), Expect = 2e-23
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKP 226
TMWKLPMFGCTDA QVL EL+EA KA+PD F+RIIGFDNVRQVQ+ SFIAYKP
Sbjct: 68 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 120
>ref|XP_007151771.1| hypothetical protein PHAVU_004G073400g, partial [Phaseolus
vulgaris] gi|561025080|gb|ESW23765.1| hypothetical
protein PHAVU_004G073400g, partial [Phaseolus vulgaris]
Length = 121
Score = 95.9 bits (237), Expect = 3e-23
Identities = 46/56 (82%), Positives = 47/56 (83%)
Frame = -1
Query: 384 TMWKLPMFGCTDAVQVLNELDEAIKAHPDGFIRIIGFDNVRQVQICSFIAYKPAKY 217
TMWKLPMFGCTD+ QVL EL EA AHPDGFIRIIGFDNVRQVQ SFIAYKP Y
Sbjct: 66 TMWKLPMFGCTDSSQVLKELYEAQTAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 121