BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00000053
         (3675 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKN59248.1| polyprotein [Lychnis mottle virus]                    1314   0.0  
ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...  1088   0.0  
gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]           719   0.0  
gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]           716   0.0  
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...   816   0.0  
gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot ...   629   0.0  
gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot ...   629   0.0  
gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot ...   625   0.0  
gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot ...   618   0.0  
gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot ...   619   0.0  
ref|YP_227374.1| putative 40 kDa movement protein [Strawberry la...   598   0.0  
ref|YP_227375.1| large coat protein [Strawberry latent ringspot ...   498   e-162
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   280   6e-83
gb|ABC58719.1| coat protein, partial [Strawberry latent ringspot...   255   4e-75
gb|ABC58721.2| coat protein, partial [Strawberry latent ringspot...   254   7e-75
gb|AAR99477.1| coat protein, partial [Strawberry latent ringspot...   253   2e-74
gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot...   236   1e-68
gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot...   234   6e-68
gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot...   232   3e-67
gb|AEF97400.1| coat protein, partial [Strawberry latent ringspot...   222   9e-64

>gb|AKN59248.1| polyprotein [Lychnis mottle virus]
          Length = 994

 Score = 1314 bits (3401), Expect = 0.0
 Identities = 653/739 (88%), Positives = 678/739 (91%)
 Frame = -3

Query: 3331 MTSFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3152
            M+SFFGRRS QEMPNVPSYS KEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT
Sbjct: 1    MSSFFGRRSTQEMPNVPSYSPKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 60

Query: 3151 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLAHQTTVVHTPEPLFXXX 2972
            SQLKSL+ATT+TSN+L RL+EKPKA+VHVSEGVGRQVLCDDKL HQTTVVHTPEPL+   
Sbjct: 61   SQLKSLVATTATSNSLMRLREKPKAIVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLYKKM 120

Query: 2971 XXXXXXXXKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2792
                    KDTG EEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG
Sbjct: 121  KEKKLKSGKDTGGEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 180

Query: 2791 IGVLPLYEAHSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 2612
            IGVLPLYEAHSHALF PRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2611 NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKT 2432
            NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQ AEIAPLQPARLTR ASYMPIQRAGTKT
Sbjct: 241  NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEIAPLQPARLTRSASYMPIQRAGTKT 300

Query: 2431 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2252
            VLTFE+N+AQ+KEQQPVQ RA+FSFANISYGQQDRAALP   PQKCQFHNKVGCPCAQH 
Sbjct: 301  VLTFEDNVAQVKEQQPVQARAAFSFANISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHA 360

Query: 2251 GNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2072
            GN EASGNHHEELVPAS+GGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVG VVYTL
Sbjct: 361  GNAEASGNHHEELVPASEGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGTVVYTL 420

Query: 2071 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1892
            PI++ SL+DTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 421  PIMRASLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 480

Query: 1891 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1712
            ALALQGTWFMPGRHDSTSLTVQELATPAGFCDM  DVNGAFKVVIIKDL NFDVSDYGME
Sbjct: 481  ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMDTDVNGAFKVVIIKDLVNFDVSDYGME 540

Query: 1711 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1532
            LS+YLEVE++GLG++  GGELTTFYPLRQVVLDYELSTTTSKGKA         PAHDEA
Sbjct: 541  LSMYLEVEKVGLGDVTVGGELTTFYPLRQVVLDYELSTTTSKGKALVLPLNPLLPAHDEA 600

Query: 1531 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1352
            QFYPSCSSSILENHRYWKG LSLEVVFNLPAMAGGIAELAFAYDT +  +GD YRRFGSS
Sbjct: 601  QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIAELAFAYDTYNNADGDTYRRFGSS 660

Query: 1351 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1172
            VVDLRAHRILRARVP              LFEVKPQTGFGDVLKLVILFTAPLHISD SK
Sbjct: 661  VVDLRAHRILRARVPLSGYGGYLAGGAGSLFEVKPQTGFGDVLKLVILFTAPLHISDTSK 720

Query: 1171 KGSVLVRYLGLEDLDYLEP 1115
            +G+VLVRYLGLEDLDYLEP
Sbjct: 721  RGAVLVRYLGLEDLDYLEP 739



 Score =  480 bits (1235), Expect = e-147
 Identities = 222/236 (94%), Positives = 233/236 (98%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SGGPVIK+GT++WEEPFI+RVP+GLRQ+TFRLMTINKW+PSGFLYFPV+PSVHLPRTAGG
Sbjct: 759  SGGPVIKIGTVDWEEPFIARVPMGLRQKTFRLMTINKWAPSGFLYFPVSPSVHLPRTAGG 818

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            FEASLEQQ PLMHRSQENCQWRGTLRYHLTARLEGATE+ VLPHRSLTFSAVLLSKILPA
Sbjct: 819  FEASLEQQRPLMHRSQENCQWRGTLRYHLTARLEGATEQLVLPHRSLTFSAVLLSKILPA 878

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCFVDNSTFKPLLPLLSVRDTFSLGQD+PFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV
Sbjct: 879  PCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 938

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKY+FENTF VG
Sbjct: 939  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYFFENTFTVG 994


>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040999|gb|AAW63129.1| 109 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 989

 Score = 1088 bits (2815), Expect = 0.0
 Identities = 542/739 (73%), Positives = 611/739 (82%)
 Frame = -3

Query: 3331 MTSFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3152
            M SFF RRS  EMP+VPSYS +EMEVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 3151 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLAHQTTVVHTPEPLFXXX 2972
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKL HQTTVVHTP+ ++   
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 2971 XXXXXXXXKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2792
                    KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 2791 IGVLPLYEAHSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 2612
            IGVLPLYEAHSHALF PRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2611 NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKT 2432
            NIADAH+LPEPLPYSKLKEKYP G++GLSNFQ AEIAPLQPARLTR ASYMPI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 2431 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2252
            VLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAALP     KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 2251 GNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2072
            G  EASG  HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFPINSNVG  VYTL
Sbjct: 361  GEAEASG-LHEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTL 419

Query: 2071 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1892
            P+I+TSLKDTEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRER
Sbjct: 420  PLIRTSLKDTEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRER 479

Query: 1891 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1712
            AL LQGTWFMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GME
Sbjct: 480  ALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGME 539

Query: 1711 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1532
            LSL+L+V+ IG+G         +F PLRQVV+D++LSTTT KGKA         P  D A
Sbjct: 540  LSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGA 599

Query: 1531 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1352
            Q+YPSCSSSILENHRYWKGTL LEV+FNLPAM GG  E+ FA D+    E DAYR FGS+
Sbjct: 600  QWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGST 659

Query: 1351 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1172
            VVDLRAHR+LRARVP              LF V P T +G  L+ V+LFTAPLHISD +K
Sbjct: 660  VVDLRAHRLLRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTK 719

Query: 1171 KGSVLVRYLGLEDLDYLEP 1115
            KGSV+VRYLGLED +Y++P
Sbjct: 720  KGSVMVRYLGLEDCEYIQP 738



 Score =  281 bits (719), Expect = 1e-75
 Identities = 128/236 (54%), Positives = 162/236 (68%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SG PV++VGT +W EP + R+PLGL QR FRL+TI+KW  SGFL+FP TPS H+P+  G 
Sbjct: 754  SGAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGT 813

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R +   A +L  I+  
Sbjct: 814  FEGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGK 873

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WV
Sbjct: 874  PCFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWV 933

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFP +  + L VRD+SLWVEP + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 934  LLQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989


>gb|AKN59246.1| polyprotein [Cnidium vein yellowing virus 2]
          Length = 789

 Score =  719 bits (1857), Expect(2) = 0.0
 Identities = 360/439 (82%), Positives = 380/439 (86%)
 Frame = -3

Query: 2431 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2252
            V  FE + AQ  E      RASFSFAN  YGQQDR ALP L PQ+CQFHNKV C CAQHT
Sbjct: 101  VPAFEEDQAQSGE-----ARASFSFANAFYGQQDRVALPSLPPQECQFHNKVDCLCAQHT 155

Query: 2251 GNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2072
              +EASG+HHEELVPASDGGTEGQFFSPQPVVHPPDS+FVGSHPFSFP+NSNVG VVYTL
Sbjct: 156  SGSEASGHHHEELVPASDGGTEGQFFSPQPVVHPPDSRFVGSHPFSFPVNSNVGTVVYTL 215

Query: 2071 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1892
            PI+++SLKDTE+GRFY+GYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 216  PIMRSSLKDTEYGRFYRGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 275

Query: 1891 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1712
            ALALQGTWFMPGRHDSTSLTVQELATPAGFCDM  DVNGAFKVV+IKDLANFDVSDYGME
Sbjct: 276  ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMDMDVNGAFKVVVIKDLANFDVSDYGME 335

Query: 1711 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1532
            LS+YLEVE+IGLG+I     LTTFYPLRQVVLDYEL+TTT+KGKA         PAHD A
Sbjct: 336  LSMYLEVEKIGLGDITVDERLTTFYPLRQVVLDYELTTTTAKGKALVLPLNPLLPAHDGA 395

Query: 1531 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1352
            QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDT D  +GD YRRFGSS
Sbjct: 396  QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTYDNADGDTYRRFGSS 455

Query: 1351 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1172
            VVDLRAHRILRARVP              LFEVK QTGFGDVLKLVILFTAPLHISD SK
Sbjct: 456  VVDLRAHRILRARVPLSGYGGYLAGGSGSLFEVKSQTGFGDVLKLVILFTAPLHISDTSK 515

Query: 1171 KGSVLVRYLGLEDLDYLEP 1115
            +GSVLVRYLGLEDLDYLEP
Sbjct: 516  RGSVLVRYLGLEDLDYLEP 534



 Score =  466 bits (1198), Expect(2) = 0.0
 Identities = 213/236 (90%), Positives = 229/236 (97%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SGGPVIKVGT EWEEPFI++VP+GLRQ+TFRLMTI+KWSPSGFLYFPV+PSVHLPRTAGG
Sbjct: 554  SGGPVIKVGTAEWEEPFIAKVPMGLRQKTFRLMTISKWSPSGFLYFPVSPSVHLPRTAGG 613

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            F+ASLEQQCPLMHRSQENCQWRGTL+YHLTARLEGATE+ VLPHRSLTFSAVLLS+ILPA
Sbjct: 614  FKASLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATEQLVLPHRSLTFSAVLLSRILPA 673

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCFVD STF+PLLPLLSV+DTFSL QD+PFVEFTTPPGRW NTHFGATEQYTWRTCPVWV
Sbjct: 674  PCFVDKSTFQPLLPLLSVKDTFSLSQDHPFVEFTTPPGRWINTHFGATEQYTWRTCPVWV 733

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFPPKTM QLHVRDVSLWVEP+IEYRHPMGGFPL IPDPSPAPKY+FENTF+VG
Sbjct: 734  LLQFPPKTMTQLHVRDVSLWVEPNIEYRHPMGGFPLIIPDPSPAPKYFFENTFVVG 789



 Score =  158 bits (399), Expect = 5e-36
 Identities = 79/99 (79%), Positives = 90/99 (90%)
 Frame = -3

Query: 3325 SFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANTSQ 3146
            SFFGRRS QEMPNVPSYS +EMEVLKAAITE GI+Y DVVRAAQTESGKMAILTA NT+Q
Sbjct: 2    SFFGRRSTQEMPNVPSYSPEEMEVLKAAITEYGISYVDVVRAAQTESGKMAILTAVNTNQ 61

Query: 3145 LKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDD 3029
            L+SL+ATT+TSN+L  L++KP+A VHVSEGVG+QV CDD
Sbjct: 62   LESLVATTATSNSLVCLRKKPEATVHVSEGVGQQVFCDD 100


>gb|AKN59244.1| polyprotein [Cnidium vein yellowing virus 1]
          Length = 789

 Score =  716 bits (1849), Expect(2) = 0.0
 Identities = 357/439 (81%), Positives = 376/439 (85%)
 Frame = -3

Query: 2431 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2252
            V  FE + AQ  E      RASFS AN SYGQQDR ALP L PQ+CQFHNKVGC C QHT
Sbjct: 101  VPAFEEDQAQSGE-----ARASFSSANASYGQQDRVALPSLPPQECQFHNKVGCLCTQHT 155

Query: 2251 GNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTL 2072
              +EASG+HHEELVPAS+GGTEGQFFSPQP+ HP DS+FVGSHPFSFPINSNVG VVYTL
Sbjct: 156  SGSEASGHHHEELVPASEGGTEGQFFSPQPIAHPQDSRFVGSHPFSFPINSNVGTVVYTL 215

Query: 2071 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1892
            PI++TSL+DTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETL+KYPSRER
Sbjct: 216  PIMRTSLRDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLSKYPSRER 275

Query: 1891 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGME 1712
            ALALQGTWFMPGRHDS SLTVQELATPAGFCDM  DVNGAFKVVIIKDLANFDVSDYGME
Sbjct: 276  ALALQGTWFMPGRHDSASLTVQELATPAGFCDMDTDVNGAFKVVIIKDLANFDVSDYGME 335

Query: 1711 LSLYLEVERIGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEA 1532
            LSLYLEVE+IGLG++++   LTTFYPLRQVVLDYELSTTTSKGKA         PAHDEA
Sbjct: 336  LSLYLEVEKIGLGSVVTNEALTTFYPLRQVVLDYELSTTTSKGKALVLPLNPLLPAHDEA 395

Query: 1531 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSS 1352
            QFYPSCSSSILENHRYWKG LSLEVVFNLPAMAGGI ELAFAY+T D  +GD YRRFGSS
Sbjct: 396  QFYPSCSSSILENHRYWKGVLSLEVVFNLPAMAGGIVELAFAYNTYDNVDGDIYRRFGSS 455

Query: 1351 VVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISK 1172
            VVDLRAHRILRARVP              LFEVKPQ G GD LKLV+LFTAPLHISD SK
Sbjct: 456  VVDLRAHRILRARVPLSGYGGYLAGGSGSLFEVKPQVGSGDTLKLVVLFTAPLHISDTSK 515

Query: 1171 KGSVLVRYLGLEDLDYLEP 1115
            KGSVLVRYLGLEDLDYLEP
Sbjct: 516  KGSVLVRYLGLEDLDYLEP 534



 Score =  474 bits (1220), Expect(2) = 0.0
 Identities = 215/236 (91%), Positives = 231/236 (97%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SGGP++KVGT+EWEEPFIS+VPLGLRQ+TFRLMTINKW+PSGFLYFPVTPSVHLPRTAG 
Sbjct: 554  SGGPIVKVGTVEWEEPFISKVPLGLRQKTFRLMTINKWAPSGFLYFPVTPSVHLPRTAGN 613

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            F A LEQQCPLMHRSQENCQWRGTL+YHLTARLEGAT++ +LPHRSLTFSAVLLSKILPA
Sbjct: 614  FVADLEQQCPLMHRSQENCQWRGTLKYHLTARLEGATDQLILPHRSLTFSAVLLSKILPA 673

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCF+DNSTFKPLLPLLSV+DTFSL QD+PFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV
Sbjct: 674  PCFIDNSTFKPLLPLLSVKDTFSLEQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 733

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAP+Y+FENTF+VG
Sbjct: 734  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPRYFFENTFVVG 789



 Score =  153 bits (386), Expect = 2e-34
 Identities = 78/99 (78%), Positives = 89/99 (89%)
 Frame = -3

Query: 3325 SFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANTSQ 3146
            S FGRRS QEMPNVPSYS +EMEVLKAAITE GI+Y DVVRAAQTESGKMAILTA +T+Q
Sbjct: 2    SSFGRRSTQEMPNVPSYSPEEMEVLKAAITEYGISYVDVVRAAQTESGKMAILTAVSTNQ 61

Query: 3145 LKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDD 3029
            L+SL+ATT+TSN+L  L++KP+A VHVSEGV RQVLCDD
Sbjct: 62   LESLVATTATSNSLVCLRKKPEATVHVSEGVRRQVLCDD 100


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score =  816 bits (2108), Expect(3) = 0.0
 Identities = 421/610 (69%), Positives = 476/610 (78%)
 Frame = -3

Query: 2944 DTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLGIGVLPLYEA 2765
            DT EEEPKY    V +    V S  S  SNQIAGVVLLDGNR+TQE AVLGIGVLPLYEA
Sbjct: 11   DTDEEEPKYALMFVLSTWSHVPSFWS--SNQIAGVVLLDGNRATQETAVLGIGVLPLYEA 68

Query: 2764 HSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRHNIADAHYLP 2585
            HSHALF PRL I      F +RLQLLTTFSD VLGGGSPAMSYSTISVVRHN+ DAH+LP
Sbjct: 69   HSHALFAPRL-ISTMMIEFCDRLQLLTTFSDVVLGGGSPAMSYSTISVVRHNVRDAHFLP 127

Query: 2584 EPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKTVLTFENNMA 2405
            EPLPYSK KEK   GV+GLSNFQ AEIAPLQPARLTR ASYMPIQR+G KTVLTFE+N A
Sbjct: 128  EPLPYSKSKEK-TSGVKGLSNFQAAEIAPLQPARLTRSASYMPIQRSGEKTVLTFEDNQA 186

Query: 2404 QIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHTGNTEASGNH 2225
             ++EQQP + RASFSF+ +SYGQQDRAALP     KC FHN+VGCPC QHTG  EASG H
Sbjct: 187  SLREQQPFEARASFSFSGVSYGQQDRAALPSAPSPKCAFHNRVGCPCKQHTGEAEASGLH 246

Query: 2224 HEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTLPIIKTSLKD 2045
             EELVPAS GGTE  FFSP+ +  P  +KFVGSHPFSFPINSNVG  VYTLP+I+TSLKD
Sbjct: 247  -EELVPASSGGTEAIFFSPKSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 305

Query: 2044 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1865
            TEWGR+Y+ Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 306  TEWGRYYRSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 365

Query: 1864 MPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGMELSLYLEVER 1685
            MPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+ 
Sbjct: 366  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 425

Query: 1684 IGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSS 1505
            IG+G         +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSS
Sbjct: 426  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 485

Query: 1504 ILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 1325
            ILENHRYWKGTL LEV+FNLPAM GG  E+ FA D+    E DAYR FGS+VVDLRAHR+
Sbjct: 486  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSYSGWESDAYRYFGSTVVDLRAHRL 545

Query: 1324 LRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYL 1145
            LRA+VP              LF V P T +G  L+ V+LFTAPLHISD +K GSV+VRYL
Sbjct: 546  LRAKVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKTGSVMVRYL 605

Query: 1144 GLEDLDYLEP 1115
            GLED +Y++P
Sbjct: 606  GLEDCEYIQP 615



 Score =  241 bits (616), Expect(3) = 0.0
 Identities = 110/203 (54%), Positives = 139/203 (68%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+ AG 
Sbjct: 631  SGAPVVQVGTSDWVEPLLFRLPLGLLQKRFRLLTISKWPKSGFLFFPTTPSSHIPKLAGT 690

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R +   A +L  I+  
Sbjct: 691  FEGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGK 750

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WV
Sbjct: 751  PCFIEKDTFVQVMPMADPRETIYLPTTDSIASYETPPRRWVNTHFGATETYGVRTCPAWV 810

Query: 573  LLQFPPKTMAQLHVRDVSLWVEP 505
            LLQFP +  + L VRD+SLWVEP
Sbjct: 811  LLQFPNEEASHLGVRDISLWVEP 833



 Score = 33.1 bits (74), Expect(3) = 0.0
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 397 LFLGISLGEYPWPR 356
           LFLGIS GEYPWPR
Sbjct: 873 LFLGISQGEYPWPR 886


>gb|ADN88403.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  629 bits (1623), Expect(2) = 0.0
 Identities = 313/465 (67%), Positives = 363/465 (78%), Gaps = 3/465 (0%)
 Frame = -3

Query: 2500 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2321
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2320 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2141
            LP   PQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2140 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1961
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1960 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1781
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1780 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1610
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1609 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1430
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1429 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1250
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1249 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEP 1115
            P T +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQP 461



 Score =  280 bits (717), Expect(2) = 0.0
 Identities = 132/236 (55%), Positives = 163/236 (69%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+ P+TPS H+P+ AG 
Sbjct: 477  SGAPVVQVGTSDWVEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPKLAGT 536

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  IL  
Sbjct: 537  FEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDNILGK 596

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTCP WV
Sbjct: 597  PCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTCPAWV 656

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 657  LLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88405.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  629 bits (1623), Expect(2) = 0.0
 Identities = 313/465 (67%), Positives = 363/465 (78%), Gaps = 3/465 (0%)
 Frame = -3

Query: 2500 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2321
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2320 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2141
            LP   PQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2140 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1961
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1960 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1781
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1780 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1610
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1609 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1430
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1429 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1250
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1249 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEP 1115
            P T +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQP 461



 Score =  280 bits (715), Expect(2) = 0.0
 Identities = 132/236 (55%), Positives = 162/236 (68%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SG PV++VGT +W EP   R+PLGL Q+ FRL+TI+KW  SGFL+ P+TPS H+P+ AG 
Sbjct: 477  SGAPVVQVGTFDWVEPPSLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPKLAGT 536

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  IL  
Sbjct: 537  FEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDNILGK 596

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTCP WV
Sbjct: 597  PCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTCPAWV 656

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 657  LLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88406.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  625 bits (1611), Expect(2) = 0.0
 Identities = 312/465 (67%), Positives = 362/465 (77%), Gaps = 3/465 (0%)
 Frame = -3

Query: 2500 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2321
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2320 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2141
            LP     KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ V  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSVPVPGSA 119

Query: 2140 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1961
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRLI S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLISSAPIQ 179

Query: 1960 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1781
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1780 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1610
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1609 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1430
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1429 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1250
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRHFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1249 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEP 1115
            P T +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQP 461



 Score =  282 bits (721), Expect(2) = 0.0
 Identities = 130/236 (55%), Positives = 165/236 (69%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP+TPS H+P+  G 
Sbjct: 477  SGAPVVQVGTSDWMEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPKLVGT 536

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  IL  
Sbjct: 537  FEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDNILGK 596

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WV
Sbjct: 597  PCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTCPAWV 656

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFP +  + L VRD+SLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 657  LLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88402.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  618 bits (1593), Expect(2) = 0.0
 Identities = 308/465 (66%), Positives = 361/465 (77%), Gaps = 3/465 (0%)
 Frame = -3

Query: 2500 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2321
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2320 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2141
            LP     KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGGA 119

Query: 2140 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1961
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1960 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1781
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1780 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1610
            NGAFKVVIIK L NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKALENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1609 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1430
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1429 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1250
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1249 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEP 1115
            P T +G  L+ V+LFTAPLHISD +KKGSV++R+LGLED +Y++P
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRFLGLEDCEYIQP 461



 Score =  286 bits (731), Expect(2) = 0.0
 Identities = 132/236 (55%), Positives = 166/236 (70%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP+TPS H+P+ AG 
Sbjct: 477  SGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPKLAGT 536

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT R VLP R + F A +L  IL  
Sbjct: 537  FEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPRGVLPMRPVCFGATVLDNILDK 596

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WV
Sbjct: 597  PCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTCPAWV 656

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFP +  + L +RDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 657  LLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88404.1| polyprotein, partial [Strawberry latent ringspot virus]
          Length = 712

 Score =  619 bits (1595), Expect(2) = 0.0
 Identities = 308/465 (66%), Positives = 361/465 (77%), Gaps = 3/465 (0%)
 Frame = -3

Query: 2500 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2321
            PLQPARLTR ASYMP+QR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPVQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 2320 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2141
            LP     KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGSA 119

Query: 2140 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1961
            KFVGSHPFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1960 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSADV 1781
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELAT +G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATLSGYSIMNSDH 239

Query: 1780 NGAFKVVIIKDLANFDVSDYGMELSLYLEVERIGLGNIMSGGEL---TTFYPLRQVVLDY 1610
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMG---IGPELPLTDSFLPLRQVVVDF 296

Query: 1609 ELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 1430
            +LSTTT KGKA         P  D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 1429 GIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXLFEVK 1250
            G  E+ FA ++    E DAYR FGS+VVDLRAHR+LRA+VP              LF V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 1249 PQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYLGLEDLDYLEP 1115
            P T +G  L+ V+LFTAPLHISD +KKGSV++RYLGLED +Y++P
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQP 461



 Score =  285 bits (728), Expect(2) = 0.0
 Identities = 132/236 (55%), Positives = 166/236 (70%)
 Frame = -1

Query: 1113 SGGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGG 934
            SG PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP+TPS H+P+ AG 
Sbjct: 477  SGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPKLAGT 536

Query: 933  FEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPA 754
            FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  IL  
Sbjct: 537  FEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDNILDK 596

Query: 753  PCFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWV 574
            PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WV
Sbjct: 597  PCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTCPAWV 656

Query: 573  LLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LLQFP +  + L VRDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 657  LLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>ref|YP_227374.1| putative 40 kDa movement protein [Strawberry latent ringspot virus]
          Length = 366

 Score =  598 bits (1543), Expect = 0.0
 Identities = 294/366 (80%), Positives = 323/366 (88%)
 Frame = -3

Query: 3331 MTSFFGRRSIQEMPNVPSYSAKEMEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 3152
            M SFF RRS  EMP+VPSYS +EMEVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 3151 SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLAHQTTVVHTPEPLFXXX 2972
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKL HQTTVVHTP+ ++   
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 2971 XXXXXXXXKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 2792
                    KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 2791 IGVLPLYEAHSHALFTPRLNIHYDDPNFVNRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 2612
            IGVLPLYEAHSHALF PRLNIHYDDPNFV+RLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 2611 NIADAHYLPEPLPYSKLKEKYPCGVRGLSNFQVAEIAPLQPARLTRGASYMPIQRAGTKT 2432
            NIADAH+LPEPLPYSKLKEKYP G++GLSNFQ AEIAPLQPARLTR ASYMPI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 2431 VLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKVGCPCAQHT 2252
            VLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAALP     KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 2251 GNTEAS 2234
            G  EAS
Sbjct: 361  GEAEAS 366


>ref|YP_227375.1| large coat protein [Strawberry latent ringspot virus]
          Length = 388

 Score =  498 bits (1281), Expect = e-162
 Identities = 247/370 (66%), Positives = 287/370 (77%)
 Frame = -3

Query: 2224 HEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSNVGAVVYTLPIIKTSLKD 2045
            HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFPINSNVG  VYTLP+I+TSLKD
Sbjct: 3    HEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 62

Query: 2044 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1865
            TEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 63   TEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 122

Query: 1864 MPGRHDSTSLTVQELATPAGFCDMSADVNGAFKVVIIKDLANFDVSDYGMELSLYLEVER 1685
            MPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+ 
Sbjct: 123  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 182

Query: 1684 IGLGNIMSGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXPAHDEAQFYPSCSSS 1505
            IG+G         +F PLRQVV+D++LSTTT KGKA         P  D AQ+YPSCSSS
Sbjct: 183  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 242

Query: 1504 ILENHRYWKGTLSLEVVFNLPAMAGGIAELAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 1325
            ILENHRYWKGTL LEV+FNLPAM GG  E+ FA D+    E DAYR FGS+VVDLRAHR+
Sbjct: 243  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRL 302

Query: 1324 LRARVPXXXXXXXXXXXXXXLFEVKPQTGFGDVLKLVILFTAPLHISDISKKGSVLVRYL 1145
            LRARVP              LF V P T +G  L+ V+LFTAPLHISD +KKGSV+VRYL
Sbjct: 303  LRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKKGSVMVRYL 362

Query: 1144 GLEDLDYLEP 1115
            GLED +Y++P
Sbjct: 363  GLEDCEYIQP 372


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  280 bits (715), Expect = 6e-83
 Identities = 127/235 (54%), Positives = 161/235 (68%)
 Frame = -1

Query: 1110 GGPVIKVGTLEWEEPFISRVPLGLRQRTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGF 931
            G PV++VGT +W EP + R+PLGL QR FRL+TI+KW  SGFL+FP TPS H+P+  G F
Sbjct: 1    GAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTF 60

Query: 930  EASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATERSVLPHRSLTFSAVLLSKILPAP 751
            E  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R +   A +L  I+  P
Sbjct: 61   EGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKP 120

Query: 750  CFVDNSTFKPLLPLLSVRDTFSLGQDYPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVL 571
            CF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WVL
Sbjct: 121  CFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVL 180

Query: 570  LQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFIVG 406
            LQFP +  + L VRD+SLWVEP + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 181  LQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235


>gb|ABC58719.1| coat protein, partial [Strawberry latent ringspot virus]
            gi|84380737|gb|ABC58720.1| coat protein, partial
            [Strawberry latent ringspot virus]
          Length = 165

 Score =  255 bits (651), Expect = 4e-75
 Identities = 119/166 (71%), Positives = 137/166 (82%)
 Frame = -3

Query: 2500 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2321
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQQDRA+
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAS 60

Query: 2320 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2141
            LP     KC FHN+VGCPC QHTG  EASG  HEEL+PA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELIPAASGGTEAIFFSPKSIPLPGSA 119

Query: 2140 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2003
            KFVGSHPFSFPINSNVG  VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|ABC58721.2| coat protein, partial [Strawberry latent ringspot virus]
          Length = 165

 Score =  254 bits (649), Expect = 7e-75
 Identities = 119/166 (71%), Positives = 137/166 (82%)
 Frame = -3

Query: 2500 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2321
            PLQPARLTR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 2320 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2141
            LP   P KC FHN+VGCPC QHTG TE+SG  HEELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPSKCSFHNRVGCPCKQHTGETESSG-LHEELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 2140 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2003
            KFVGS+PFSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+ Y ++R
Sbjct: 120  KFVGSYPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMR 165


>gb|AAR99477.1| coat protein, partial [Strawberry latent ringspot virus]
            gi|41745996|gb|AAS10194.1| coat protein, partial
            [Strawberry latent ringspot virus]
          Length = 165

 Score =  253 bits (646), Expect = 2e-74
 Identities = 120/166 (72%), Positives = 137/166 (82%)
 Frame = -3

Query: 2500 PLQPARLTRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAA 2321
            PLQPARLTR ASYMPI+R+G KTVLTFE+N A ++EQQP+Q RASFSF+ ISYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIRRSGAKTVLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAA 60

Query: 2320 LPGLLPQKCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 2141
            LP     KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPFAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSA 119

Query: 2140 KFVGSHPFSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYKGYRYLR 2003
            KFVGSHPFSFPINSNVG  VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  236 bits (602), Expect = 1e-68
 Identities = 111/153 (72%), Positives = 125/153 (81%)
 Frame = -3

Query: 2479 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2300
            TR ASYMPIQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAALP   PQ
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPQ 60

Query: 2299 KCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2120
            KC FHN+VGCPC QHTG  E SG  HEELVPAS GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCTQHTGEAEPSG-LHEELVPASSGGTEAIFFSPKSIPVPGSAKFVGSHP 119

Query: 2119 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2021
            FSFPINSNVG  VY+LP+I TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYSLPLISTSLKDTEWGRYYR 152


>gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot virus]
            gi|560369183|gb|AHB30926.1| coat protein, partial
            [Strawberry latent ringspot virus]
          Length = 152

 Score =  234 bits (597), Expect = 6e-68
 Identities = 110/153 (71%), Positives = 126/153 (82%)
 Frame = -3

Query: 2479 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2300
            TR ASYMPIQR+G KTVLTFE+N A ++EQQP+Q RASFSF+ +SYGQQDRAALP     
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 2299 KCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2120
            KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKFVGSHP 119

Query: 2119 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2021
            FSFPINSNVG  VYTLP+I+TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYR 152


>gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  232 bits (592), Expect = 3e-67
 Identities = 110/153 (71%), Positives = 125/153 (81%)
 Frame = -3

Query: 2479 TRGASYMPIQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQ 2300
            TR ASYMPIQR+G KTVLTFE+N A ++EQQP+Q RASFSF+ +SYGQQDRAALP     
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 2299 KCQFHNKVGCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 2120
            KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +K VGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKSVGSHP 119

Query: 2119 FSFPINSNVGAVVYTLPIIKTSLKDTEWGRFYK 2021
            FSFPINSNVG  VYTLP+I+TSLKDTEWGR+YK
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYK 152


>gb|AEF97400.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 148

 Score =  222 bits (566), Expect = 9e-64
 Identities = 103/147 (70%), Positives = 119/147 (80%)
 Frame = -3

Query: 2455 IQRAGTKTVLTFENNMAQIKEQQPVQTRASFSFANISYGQQDRAALPGLLPQKCQFHNKV 2276
            IQR+G KTVLTFE+N A +KEQQP+Q RASFSF+ +SYGQ DRAALP   P KC FHN+V
Sbjct: 2    IQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPSKCSFHNRV 61

Query: 2275 GCPCAQHTGNTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPINSN 2096
            GCPC QHTG TE SG  HEEL+PA+ GGTE  FFSP+ +  P  +KFVGSHPFSFPINSN
Sbjct: 62   GCPCKQHTGETEPSG-LHEELIPAASGGTEAIFFSPKSIPVPGGAKFVGSHPFSFPINSN 120

Query: 2095 VGAVVYTLPIIKTSLKDTEWGRFYKGY 2015
            VG  VY+LP+I TSLKDTEWGR+Y+ Y
Sbjct: 121  VGTTVYSLPLISTSLKDTEWGRYYRSY 147