BLASTX nr result
ID: Rehmannia28_contig00000030
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00000030
(7032 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1] 4026 0.0
gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2] 3966 0.0
gb|AKN59247.1| polyprotein [Lychnis mottle virus] 3943 0.0
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 3611 0.0
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 1183 0.0
ref|YP_227370.1| helicase [Strawberry latent ringspot virus] 978 0.0
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v... 941 0.0
ref|YP_227372.1| protease [Strawberry latent ringspot virus] 500 e-159
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]... 353 2e-94
gb|AAZ76594.1| polyprotein, partial [Stocky prune virus] 321 1e-89
ref|YP_009220374.1| polyprotein [Currant latent virus] gi|966557... 335 9e-89
gb|AHN52254.1| polyprotein, partial [Currant latent virus] 306 4e-85
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe... 303 4e-84
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ... 296 6e-82
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus] 312 7e-82
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] gi|8200270... 307 2e-80
ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523... 303 4e-79
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus] 273 7e-70
ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt v... 255 5e-68
ref|YP_002158831.1| unnamed protein product [Mikania micrantha m... 248 7e-68
>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
Length = 2205
Score = 4026 bits (10440), Expect = 0.0
Identities = 1974/2209 (89%), Positives = 2050/2209 (92%), Gaps = 2/2209 (0%)
Frame = +2
Query: 248 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 427
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 428 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 607
+NLQVERDRC MRE+EE ELL+AD+E+EFMSEL+ F++P PF G+SFGTV+ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTVPKIGSS 120
Query: 608 YVHQAIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 787
Y + I KA GLDVEEY K+QAP+AG+RNFL+ + DAE LT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPKAGVRNFLQPNCRTDAEVLTTIVRTAIENPGFGNPSF 180
Query: 788 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMTQA 967
DYTGLGGDEFKYRFDKDGLFADD LGLARFVSAGFTE P VAPLTSGD VM QA
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSRPNVFDVAPLTSGDFKVMIQA 240
Query: 968 LSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPG 1147
LSDEW EWIYFEEDYEE L E ++FFPF LE+ K+ PLSPT VLDSADSYLPG
Sbjct: 241 LSDEWSEWIYFEEDYEEALSEEFEIFFPF---LESAKVCEPA-PLSPTSVLDSADSYLPG 296
Query: 1148 TKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEP 1327
TKWVYDSDEED+IPVAPIDRFHNKKFD+DF DYCDTEY +QP + YTETWF+DGCLP P
Sbjct: 297 TKWVYDSDEEDHIPVAPIDRFHNKKFDLDFEDYCDTEYLEQPAETVYTETWFIDGCLPGP 356
Query: 1328 WFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKK 1507
WF RG LDEAIICEKLPL+GKSPLEL+IQYQV+PTGDLL D+QRALFAYYEKEA PNKK
Sbjct: 357 WFKRGVSLDEAIICEKLPLIGKSPLELIIQYQVKPTGDLLLDVQRALFAYYEKEAWPNKK 416
Query: 1508 YFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGV 1687
+FDLNGVPT+LVFEDWR DLRYCLYAP V+GNQLKHLMAIV+APLPGWLLDFPKR+KSG
Sbjct: 417 HFDLNGVPTMLVFEDWRCDLRYCLYAPFVQGNQLKHLMAIVDAPLPGWLLDFPKRQKSGT 476
Query: 1688 LQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 1867
LQASGWNPLRYF KQ TLGFLDGV++KLRELLGPVINAAGYVWDLIIKAKDYAF+MLDEM
Sbjct: 477 LQASGWNPLRYFSKQATLGFLDGVIAKLRELLGPVINAAGYVWDLIIKAKDYAFAMLDEM 536
Query: 1868 VSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 2047
+SKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 537 ISKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 596
Query: 2048 LGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXXKEEWLRELMASPHSI 2227
LGQAHMGALKRSTKIWELVQKWDQPSEV+R KEEW RELMASPHSI
Sbjct: 597 LGQAHMGALKRSTKIWELVQKWDQPSEVRRIDEEIVEILVEESPEKEEWFRELMASPHSI 656
Query: 2228 PECVIDLTHMKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 2407
PECVIDLTHMKDLLG +CS+FKEAFEVG VASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 657 PECVIDLTHMKDLLGGKCSSFKEAFEVGTSVASSPGMLFGSGFIWKILLLLCPLSMFGVS 716
Query: 2408 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 2587
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYAT+GVDFQAWR
Sbjct: 717 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATIGVDFQAWR 776
Query: 2588 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 2767
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 777 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 836
Query: 2768 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 2947
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG
Sbjct: 837 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 896
Query: 2948 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSD 3127
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSD
Sbjct: 897 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 956
Query: 3128 FVFITANQAGLTPSAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3307
FVFITANQAGLTP AVVHC+KAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 957 FVFITANQAGLTPGAVVHCRKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1016
Query: 3308 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPF 3487
RFQVMNYEQFLQYTVNQS+QHFSEQVDLRDAPHTQ+F AADQIAAEAEEGF+ AGIKVPF
Sbjct: 1017 RFQVMNYEQFLQYTVNQSRQHFSEQVDLRDAPHTQIFAAADQIAAEAEEGFQTAGIKVPF 1076
Query: 3488 TMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLK 3667
TMLKSLSGDQLTYYSEE+MME+TETLTPEDADIIRSRLDPG+ITQQLQMLLPKAAYVNLK
Sbjct: 1077 TMLKSLSGDQLTYYSEEKMMEITETLTPEDADIIRSRLDPGVITQQLQMLLPKAAYVNLK 1136
Query: 3668 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKA 3847
NHFGLGTDPFEQPNPYFNCSQRAKVIGRF++PKVTEEQLEQHKRGF +AKELAQGACKA
Sbjct: 1137 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEQHKRGFVVIAKELAQGACKA 1196
Query: 3848 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 4027
INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYT PCLLTFATLGTMKASGSLSSSQDQ
Sbjct: 1197 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTTPCLLTFATLGTMKASGSLSSSQDQET 1256
Query: 4028 XXXXXXXXXXXYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 4207
YLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1257 RRTASGRERRRYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 1316
Query: 4208 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 4387
TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV
Sbjct: 1317 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 1376
Query: 4388 LKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 4567
LK+EKWLLSSHDPFMAGSGWFMEMLFR +GVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1377 LKIEKWLLSSHDPFMAGSGWFMEMLFRDHGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1436
Query: 4568 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 4747
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKD II
Sbjct: 1437 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDAII 1496
Query: 4748 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAP 4927
AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPS AP
Sbjct: 1497 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSEAP 1556
Query: 4928 RQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 5107
RQATTSEI+KSSISADLEALTGEK+KTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD
Sbjct: 1557 RQATTSEIRKSSISADLEALTGEKKKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 1616
Query: 5108 MSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 5287
MSPVTEEE+KIWDLTWDSIFDLPGGIE+KCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP
Sbjct: 1617 MSPVTEEEQKIWDLTWDSIFDLPGGIEKKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 1676
Query: 5288 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 5467
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL
Sbjct: 1677 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 1736
Query: 5468 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 5647
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1737 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1796
Query: 5648 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVA 5827
KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG+RRLHLMLAATTRLGVA
Sbjct: 1797 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGNRRLHLMLAATTRLGVA 1856
Query: 5828 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 6007
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS+SLFFSDCVELAVVGDDNLV
Sbjct: 1857 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASTSLFFSDCVELAVVGDDNLV 1916
Query: 6008 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 6187
SVKE+AAS+FNLKKLS+FLADFGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1917 SVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1976
Query: 6188 LAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 6367
LAP HWVRETNMSNA ATQNNVEGFLRELFHYGDK LYCKWRRDLIDLCSK
Sbjct: 1977 LAPLSWLSLSESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKNLYCKWRRDLIDLCSK 2036
Query: 6368 NRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKW 6547
NRVPHPTTYSFEELERSWLSGKSVASIFEKEE E++VIRD ASDVAPGVHIVPV+QCLKW
Sbjct: 2037 NRVPHPTTYSFEELERSWLSGKSVASIFEKEEPEIIVIRDSASDVAPGVHIVPVRQCLKW 2096
Query: 6548 KTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTG 6727
GEVPNVVWCGPNCPNQLRNA++CFQIQAPQGS+YPLRNT RNLLKKVHQRGDEVYFTG
Sbjct: 2097 NAGEVPNVVWCGPNCPNQLRNASSCFQIQAPQGSKYPLRNTTRNLLKKVHQRGDEVYFTG 2156
Query: 6728 ALNQSLVHWVAAFYASMYRESF--XXXXXXXXXXXXXXXXXSTVAAKGW 6868
+LNQSLVHWVAAFYASMYRESF ST+AAKGW
Sbjct: 2157 SLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2205
>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
Length = 2209
Score = 3966 bits (10285), Expect = 0.0
Identities = 1933/2209 (87%), Positives = 2034/2209 (92%), Gaps = 2/2209 (0%)
Frame = +2
Query: 248 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 427
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 428 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 607
+NLQVERDRC MRE+EE ELL+AD+E+EFMSEL+ F++P PF G+SFGTV+ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTDPKIGSS 120
Query: 608 YVHQAIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 787
Y + I KA GLDVEEY K+QAPRAG RNFL+ + D E LT +VRTAI NPGFGNPSF
Sbjct: 121 YAGRKILKAKGLDVEEYAKFQAPRAGARNFLQPNCRTDVEVLTTIVRTAIENPGFGNPSF 180
Query: 788 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMTQA 967
DYTGLGGDEFKYRFDKDGLFADD LGLARFVSAGFTE P VAPLTSGD +VM +A
Sbjct: 181 DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSKPNVFDVAPLTSGDFNVMMRA 240
Query: 968 LSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPG 1147
LSDEW EW YFEEDYEE L EG ++FFP +ET K + + P SPTCVLDSADSYL G
Sbjct: 241 LSDEWVEWCYFEEDYEEALTEGFELFFPPHNGVETLKSSLGSGPSSPTCVLDSADSYLSG 300
Query: 1148 TKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEP 1327
TKWVYDSDEE+Y+PVAP+D+FHNKKF++DF+DYCD EY +QPVGS TETWF+DGCLP P
Sbjct: 301 TKWVYDSDEEEYVPVAPVDQFHNKKFNLDFIDYCDLEYIEQPVGSLRTETWFIDGCLPGP 360
Query: 1328 WFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKK 1507
WF RG +DEA+ICEKLPL+GKSPLEL+IQYQV PTGDLL DIQRALFAYYE+EALPNKK
Sbjct: 361 WFKRGALIDEAVICEKLPLIGKSPLELIIQYQVAPTGDLLLDIQRALFAYYEREALPNKK 420
Query: 1508 YFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGV 1687
+FDLNGVPTLLVFEDWRADLRYCL+AP + GNQLKHLM +++ PLPGWLLDFPKR++SG+
Sbjct: 421 FFDLNGVPTLLVFEDWRADLRYCLFAPFISGNQLKHLMVVIDTPLPGWLLDFPKRQRSGL 480
Query: 1688 LQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 1867
LQASGWNPLRYF KQ TLGFLDGVV+KLRELLGPVINAAGYVWDL+IKAKDYAFSMLDEM
Sbjct: 481 LQASGWNPLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLVIKAKDYAFSMLDEM 540
Query: 1868 VSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 2047
+SKRGEIL+ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 541 ISKRGEILRALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 600
Query: 2048 LGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXXKEEWLRELMASPHSI 2227
LG AHMGALKRSTKIWELVQKWD+PSEVK KEEWLRELMASPHS+
Sbjct: 601 LGHAHMGALKRSTKIWELVQKWDKPSEVKCIDGEIIDILIEESPEKEEWLRELMASPHSV 660
Query: 2228 PECVIDLTHMKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 2407
PECVIDLTHMKDLLG +CSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 661 PECVIDLTHMKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 720
Query: 2408 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 2587
KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTG KSEFLDYIYATVGVDFQAWR
Sbjct: 721 KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGGKSEFLDYIYATVGVDFQAWR 780
Query: 2588 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 2767
SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 781 SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 840
Query: 2768 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 2947
RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD+LDSLDYAQTGRVFSRNG
Sbjct: 841 RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDLLDSLDYAQTGRVFSRNG 900
Query: 2948 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSD 3127
SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSD
Sbjct: 901 SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSD 960
Query: 3128 FVFITANQAGLTPSAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 3307
FVFITANQAGLTP AVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD
Sbjct: 961 FVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDD 1020
Query: 3308 RFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPF 3487
RFQVMNYEQFLQY VNQSKQHFSEQVDLRDAPHTQ+F+AADQIAAEAEEGF+ AGIK+PF
Sbjct: 1021 RFQVMNYEQFLQYAVNQSKQHFSEQVDLRDAPHTQIFSAADQIAAEAEEGFQTAGIKIPF 1080
Query: 3488 TMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLK 3667
MLKSLSGDQLTYYSEE+MMEVTETL PEDADIIRSRLDPG+ITQQLQ LLPKAAYVNLK
Sbjct: 1081 CMLKSLSGDQLTYYSEEKMMEVTETLAPEDADIIRSRLDPGMITQQLQALLPKAAYVNLK 1140
Query: 3668 NHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKA 3847
NHF LGTDPFEQPNPYFNCSQRAKVIGRF++PKVTEEQLE HKRGF +AKELAQGA KA
Sbjct: 1141 NHFSLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEHHKRGFMMIAKELAQGAYKA 1200
Query: 3848 INDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXX 4027
++DAPFLVKLLLGFGALYFVG PLLSWLKSLYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1201 VSDAPFLVKLLLGFGALYFVGAPLLSWLKSLYTAPCLLTFTTLGAMKASGSLSSSQDQET 1260
Query: 4028 XXXXXXXXXXXYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGG 4207
YLLEASGPGAVEAKAQDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGG
Sbjct: 1261 RRTASGRERRRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGG 1320
Query: 4208 TRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPV 4387
TRVLMVYHVWLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTFVSFPV
Sbjct: 1321 TRVLMVYHVWLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFVSFPV 1380
Query: 4388 LKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 4567
LKLEKWLLSSHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGL
Sbjct: 1381 LKLEKWLLSSHDPFMAGSGWFMEMLFQKNGVLEVAREEADYTLLDTNDVYDAAFLKGVGL 1440
Query: 4568 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTII 4747
NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTII
Sbjct: 1441 NKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTII 1500
Query: 4748 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAP 4927
AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL+PS AP
Sbjct: 1501 AGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLQPSDAP 1560
Query: 4928 RQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAAD 5107
RQAT+SEIKKSSISADLE LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAAD
Sbjct: 1561 RQATSSEIKKSSISADLEMLTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAAD 1620
Query: 5108 MSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWP 5287
MSPVTE+EEKIW+LTWDSIFDLPGGI KCHLLSEDENLNGVNGDNEYRGMVV+TSEGWP
Sbjct: 1621 MSPVTEDEEKIWNLTWDSIFDLPGGIASKCHLLSEDENLNGVNGDNEYRGMVVTTSEGWP 1680
Query: 5288 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERL 5467
EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRI+DMDELC TTIPCIVGLDTAKDERL
Sbjct: 1681 EVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRIVDMDELCKTTIPCIVGLDTAKDERL 1740
Query: 5468 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 5647
PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG
Sbjct: 1741 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1800
Query: 5648 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVA 5827
KRMHAKGTNWFNGD SRFDGVTPRCLL+EI+RRITLLY DDQGDRRLHLMLAATTRLGVA
Sbjct: 1801 KRMHAKGTNWFNGDSSRFDGVTPRCLLVEISRRITLLYGDDQGDRRLHLMLAATTRLGVA 1860
Query: 5828 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 6007
GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV
Sbjct: 1861 GIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLV 1920
Query: 6008 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 6187
SVK+IAA++FNLKKLSSFLA FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRY
Sbjct: 1921 SVKQIAAADFNLKKLSSFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRY 1980
Query: 6188 LAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 6367
LAP HWVRETNMSN+ ATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK
Sbjct: 1981 LAPLSWLSLSESLHWVRETNMSNSAATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 2040
Query: 6368 NRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKW 6547
NRVPHPTTYSFEELERSWLSGK+VASIFEKEE EV+VIRDGASD+AP VHI+PVQQCLKW
Sbjct: 2041 NRVPHPTTYSFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPDVHIIPVQQCLKW 2100
Query: 6548 KTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTG 6727
++ EVPNVVWCGPNCPNQL+NA+TCFQIQAPQGS+YPLR+T+RN LKKVHQRGD+VYFTG
Sbjct: 2101 RSDEVPNVVWCGPNCPNQLKNASTCFQIQAPQGSKYPLRSTIRNFLKKVHQRGDKVYFTG 2160
Query: 6728 ALNQSLVHWVAAFYASMYRESF--XXXXXXXXXXXXXXXXXSTVAAKGW 6868
A+NQSLVHWVAAFYASMYRESF ST+AAKGW
Sbjct: 2161 AINQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTIAAKGW 2209
>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
Length = 2260
Score = 3943 bits (10226), Expect = 0.0
Identities = 1932/2260 (85%), Positives = 2034/2260 (90%), Gaps = 53/2260 (2%)
Frame = +2
Query: 248 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 427
MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD G LGGLVSTGRCA MKE
Sbjct: 1 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60
Query: 428 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 607
+NLQVERDRC MRE+EE ELL+AD+E+EF+SEL+ FV+P F G+SFGT++ T P +G S
Sbjct: 61 KNLQVERDRCAMREFEEEELLEADVEMEFVSELMDFVAPFSFPGISFGTISMTTPKIGAS 120
Query: 608 YVHQAIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 787
Y + IFKA G DVEEYTK+QAP+AG RNFL+ DR DAE LT VVRTAI NPGFGNPSF
Sbjct: 121 YAGRKIFKAKGFDVEEYTKFQAPKAGARNFLQPDRKSDAEILTTVVRTAIENPGFGNPSF 180
Query: 788 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGF------------------------- 892
DYTGLGGDEF+YRF KDGLFADD LGLARFVSAGF
Sbjct: 181 DYTGLGGDEFRYRFGKDGLFADDDLGLARFVSAGFTEGSRSNALDVAPLTPGDLDVISFG 240
Query: 893 --------------------------TESLGPENRSVAPLTSGDMDVMTQALSDEWCEWI 994
TE VAPLT GD+DVMTQALSDEW W
Sbjct: 241 TISMTNPKIGASYAGRKLARFVSAGFTEGSRSNALDVAPLTPGDLDVMTQALSDEWVGWY 300
Query: 995 YFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPGTKWVYDSDE 1174
+ EEDYEE L+E ++FP +++ + +E LSPTCVLDSADSY PGTKWVYDSDE
Sbjct: 301 HLEEDYEEALIEEFALYFPPHDRVKDTESLLGSESLSPTCVLDSADSYPPGTKWVYDSDE 360
Query: 1175 EDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEPWFMRGTPLD 1354
EDY+P AP+DRFHNKKF++DF+DYCD E +QP + YTETWF+DGCLP WF RGTP+D
Sbjct: 361 EDYVPTAPVDRFHNKKFNLDFIDYCDMECVEQPAENIYTETWFIDGCLPGFWFKRGTPID 420
Query: 1355 EAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKKYFDLNGVPT 1534
EA++CEKLPL+GKSPLELMIQYQV+PTGDLL D+QRALFAYYEKEALPNKK+FDLNGVPT
Sbjct: 421 EAVVCEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEKEALPNKKFFDLNGVPT 480
Query: 1535 LLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGVLQASGWNPL 1714
LLVFEDWRADLRYCL+AP ++GNQLKHLM +++APLPGWLLDFPKR+KSG+LQASGWNPL
Sbjct: 481 LLVFEDWRADLRYCLFAPFIQGNQLKHLMVVIDAPLPGWLLDFPKRQKSGLLQASGWNPL 540
Query: 1715 RYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEMVSKRGEILK 1894
RYF +QTTLGFLDGVV+KLRELLGPV+NAAGYVWDL+IKAKDYAFSMLDEM+SKRGEIL+
Sbjct: 541 RYFARQTTLGFLDGVVAKLRELLGPVVNAAGYVWDLVIKAKDYAFSMLDEMISKRGEILR 600
Query: 1895 ALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 2074
ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL
Sbjct: 601 ALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 660
Query: 2075 KRSTKIWELVQKWDQPSEVKRXXXXXXXXXXXXXXXKEEWLRELMASPHSIPECVIDLTH 2254
KRSTKIWELVQKWD+PSEVK KEEWLRELMASPHS+PECVIDLTH
Sbjct: 661 KRSTKIWELVQKWDKPSEVKHIDEEIIDLLVEESPEKEEWLRELMASPHSVPECVIDLTH 720
Query: 2255 MKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 2434
MKDLLG +CSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL
Sbjct: 721 MKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 780
Query: 2435 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 2614
ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA
Sbjct: 781 ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 840
Query: 2615 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQA 2794
TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRK PGAYITHFNNLLQSLDRALVECQQA
Sbjct: 841 TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKAPGAYITHFNNLLQSLDRALVECQQA 900
Query: 2795 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 2974
LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK
Sbjct: 901 LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 960
Query: 2975 NQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXXEAKGNTCCTSDFVFITANQA 3154
NQSAVLYDDFGAVSEGGHFDEAEIIR EAKGNTCCTSDFVFITANQA
Sbjct: 961 NQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAPLPLNMPNLEAKGNTCCTSDFVFITANQA 1020
Query: 3155 GLTPSAVVHCKKAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 3334
GLTPSAVVHCK+AFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ
Sbjct: 1021 GLTPSAVVHCKRAFENRRLILAEVTAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQ 1080
Query: 3335 FLQYTVNQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGD 3514
FLQY VNQS+QHFSEQVDLRDAPHTQ+FTAADQIAAEAEEG R AGI++PF MLKSLSGD
Sbjct: 1081 FLQYAVNQSQQHFSEQVDLRDAPHTQIFTAADQIAAEAEEGLRTAGIEIPFCMLKSLSGD 1140
Query: 3515 QLTYYSEERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDP 3694
QLTYYSEE MMEVTETL PE+ADI+RSRLDPG+ITQQLQ LLPKAAYVNLKNHFGLGTDP
Sbjct: 1141 QLTYYSEEEMMEVTETLAPEEADIVRSRLDPGVITQQLQALLPKAAYVNLKNHFGLGTDP 1200
Query: 3695 FEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVK 3874
FEQPNPYFNCSQRAKVIGRFL+PKVTEEQLEQ KRGF +AKELAQGACKAINDAPFLVK
Sbjct: 1201 FEQPNPYFNCSQRAKVIGRFLKPKVTEEQLEQRKRGFMVVAKELAQGACKAINDAPFLVK 1260
Query: 3875 LLLGFGALYFVGLPLLSWLKSLYTAPCLLTFATLGTMKASGSLSSSQDQXXXXXXXXXXX 4054
LLLGFGALYFVG PLLSWL++LYTAPCLLTF TLG MKASGSLSSSQDQ
Sbjct: 1261 LLLGFGALYFVGAPLLSWLRNLYTAPCLLTFTTLGAMKASGSLSSSQDQETRRTASGRER 1320
Query: 4055 XXYLLEASGPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 4234
YLLEASGPGAVEAKAQDVE+ELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV
Sbjct: 1321 RRYLLEASGPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHV 1380
Query: 4235 WLELQSGCYKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLS 4414
WLEL SGCYKVGSLTKTFPFTVNRK+CRFQRLGLKDLVI+DFPPTF SFPVLKLEKWLLS
Sbjct: 1381 WLELHSGCYKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFASFPVLKLEKWLLS 1440
Query: 4415 SHDPFMAGSGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 4594
SHDPFMAGSGWFMEMLF+ NGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC
Sbjct: 1441 SHDPFMAGSGWFMEMLFQRNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTIC 1500
Query: 4595 DDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITK 4774
DDTGTGYRNDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSLITK
Sbjct: 1501 DDTGTGYRNDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLITK 1560
Query: 4775 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIK 4954
EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLL PS APRQAT+SEIK
Sbjct: 1561 EEYLEASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLTPSDAPRQATSSEIK 1620
Query: 4955 KSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEE 5134
KSSISADLE LTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGM+KYKAVAADMSPVTEEEE
Sbjct: 1621 KSSISADLEILTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMMKYKAVAADMSPVTEEEE 1680
Query: 5135 KIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 5314
K+W+LTWDSIFDLPGGI KCHLL+EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE
Sbjct: 1681 KVWNLTWDSIFDLPGGIAGKCHLLTEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGE 1740
Query: 5315 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDV 5494
AGKERFLLGLPGCYTLNRDLPMYQRILDMDELC TTIPCIVGLDTAKDERLPLSKIYQDV
Sbjct: 1741 AGKERFLLGLPGCYTLNRDLPMYQRILDMDELCKTTIPCIVGLDTAKDERLPLSKIYQDV 1800
Query: 5495 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5674
KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN
Sbjct: 1801 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1860
Query: 5675 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSG 5854
WFNGDYSRFDGVTPRCLL+EI+RRIT LYND+QGDRRLHLMLAATTRLGVAGIGLYRVSG
Sbjct: 1861 WFNGDYSRFDGVTPRCLLVEISRRITALYNDNQGDRRLHLMLAATTRLGVAGIGLYRVSG 1920
Query: 5855 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASE 6034
GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVK+IAA++
Sbjct: 1921 GIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLFFSDCVELAVVGDDNLVSVKQIAAAD 1980
Query: 6035 FNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXX 6214
FNLKKLS FLA FGFTLKDGSDK+KEILPEFNPPEKCDFLKRCFKARGDRYLAP
Sbjct: 1981 FNLKKLSLFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSL 2040
Query: 6215 XXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTY 6394
HWVRETNMSNA ATQNNVEGFLRELFHYGDK+LYCKWRRDLIDLCS+NRVPHPTTY
Sbjct: 2041 SESLHWVRETNMSNAAATQNNVEGFLRELFHYGDKDLYCKWRRDLIDLCSRNRVPHPTTY 2100
Query: 6395 SFEELERSWLSGKSVASIFEKEESEVVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVV 6574
SFEELERSWLSGK+VASIFEKEE EV+VIRDGASD+APGVHIVPVQQCLKWK E+PNVV
Sbjct: 2101 SFEELERSWLSGKTVASIFEKEEPEVIVIRDGASDIAPGVHIVPVQQCLKWKPDEIPNVV 2160
Query: 6575 WCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHW 6754
WCGPNCPNQLRNA+TCFQIQAPQGS+YPLRNTVR+ LKKVHQRGD+VYFTGALNQSLVHW
Sbjct: 2161 WCGPNCPNQLRNASTCFQIQAPQGSKYPLRNTVRSFLKKVHQRGDKVYFTGALNQSLVHW 2220
Query: 6755 VAAFYASMYRESF--XXXXXXXXXXXXXXXXXSTVAAKGW 6868
VAAFYASMYRESF ST+AAKGW
Sbjct: 2221 VAAFYASMYRESFHHSAYMKAYFGDNDAGLLESTMAAKGW 2260
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
[Strawberry latent ringspot virus]
Length = 2227
Score = 3611 bits (9364), Expect = 0.0
Identities = 1772/2229 (79%), Positives = 1929/2229 (86%), Gaps = 22/2229 (0%)
Frame = +2
Query: 248 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 427
MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 428 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 607
RNL+VE DR + + L + D+E+ FMS+L F ++ + G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 608 YVHQAIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 781
Y+ + I++A GLDV +Y +Q + R FL DR DAE LT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 782 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 961
+FDYTGLGGD KYRFD D L++D S GL RFVSAGFTES + LT D+D MT
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238
Query: 962 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 1090
QALSDEW EW+YFEED EE L E L+ ++ + ++ +
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 1091 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 1270
P+SP VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 1271 PVGSAYTETWFVDGCLPEPWFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 1450
P G+ YTETWF+DGCLP WF RG +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 1451 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 1630
DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 1631 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 1810
NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 1811 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1990
VWDLIIKAKD+AF L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 1991 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXX 2170
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 2171 XXXXKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 2347
KEEW+REL+ASPH +PECVIDLTHMKDLL ++C+ FK+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 2348 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 2527
SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG
Sbjct: 719 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778
Query: 2528 KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 2707
KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779 KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838
Query: 2708 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 2887
SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839 SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898
Query: 2888 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 3067
DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 899 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958
Query: 3068 XXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPSAVVHCKKAFENRRLILAEVTAVEGGR 3247
EAKGNTCCTSDFVFITANQAGLTPSAV+HCKKAFENRRLILAEVTAVEGGR
Sbjct: 959 PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018
Query: 3248 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAA 3427
YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQ+F AA
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078
Query: 3428 DQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDP 3607
DQIAAEAEEGF+ AGI +PF MLK + G +TYY EE+ E+T L+ DADII SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138
Query: 3608 GIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLE 3787
+ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFL+PKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198
Query: 3788 QHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTF 3967
KRGF + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+AP L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258
Query: 3968 ATLGTMKASGSLSSSQDQXXXXXXXXXXXXXYLLEASGPGAVEAKAQDVESELASLSKHL 4147
A LGTM+ASGSLSSSQDQ YLLEASGPGA+EAK QDVE+ELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318
Query: 4148 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQR 4327
+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378
Query: 4328 LGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEAD 4507
+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAGSGWFMEM+F+ NGVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438
Query: 4508 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGL 4687
YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDFFYVSQCGTPLVANYG+GKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498
Query: 4688 KIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGE 4867
KIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558
Query: 4868 EFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLH 5047
EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII NRDTRL
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618
Query: 5048 DRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLN 5227
DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678
Query: 5228 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE 5407
GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738
Query: 5408 LCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 5587
L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798
Query: 5588 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND 5767
N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RIT LY D
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858
Query: 5768 DQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 5947
+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918
Query: 5948 SSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEF 6127
SSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+KEILPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978
Query: 6128 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFH 6307
NPPEKCDFLKRCFKARGDRYLAP HWVRETNM+NA ATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038
Query: 6308 YGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESEVVVIRD 6487
YGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E+VV++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098
Query: 6488 GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRN 6667
ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNAN CF IQAPQGSRYPLR+
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158
Query: 6668 TVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESF--XXXXXXXXXXXXXXXX 6841
TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218
Query: 6842 XSTVAAKGW 6868
+ AAKGW
Sbjct: 2219 EAVTAAKGW 2227
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 1183 bits (3061), Expect = 0.0
Identities = 576/675 (85%), Positives = 608/675 (90%), Gaps = 2/675 (0%)
Frame = +2
Query: 4850 GCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHN 5029
GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS LE L GEKRKTEPAII N
Sbjct: 1 GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60
Query: 5030 RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLS 5209
RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLS
Sbjct: 61 RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120
Query: 5210 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 5389
EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180
Query: 5390 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 5569
ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181 ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240
Query: 5570 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 5749
ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241 ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300
Query: 5750 TLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 5929
T LY D+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301 TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360
Query: 5930 EHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSK 6109
EHMMASSSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+K
Sbjct: 361 EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420
Query: 6110 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGF 6289
EILPEFNPPEKCDFLKRCFKARGDRYLAP HWVRETNM+NA ATQNNVEGF
Sbjct: 421 EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480
Query: 6290 LRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEESE 6469
LRELFHYGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEE E
Sbjct: 481 LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540
Query: 6470 VVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGS 6649
+VV++D ASDVAP VHIVP Q CLKWK EVP VVWCGPNCPNQLRNAN CF IQAPQGS
Sbjct: 541 IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600
Query: 6650 RYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESF--XXXXXXXXXX 6823
RYPLR+TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF
Sbjct: 601 RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660
Query: 6824 XXXXXXXSTVAAKGW 6868
+ AAKGW
Sbjct: 661 NDKGLLEAVTAAKGW 675
>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
Length = 548
Score = 978 bits (2527), Expect = 0.0
Identities = 477/548 (87%), Positives = 505/548 (92%)
Frame = +2
Query: 2351 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 2530
GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60
Query: 2531 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 2710
SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61 SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120
Query: 2711 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 2890
RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121 RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180
Query: 2891 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 3070
DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 181 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240
Query: 3071 XXXXXXXXEAKGNTCCTSDFVFITANQAGLTPSAVVHCKKAFENRRLILAEVTAVEGGRY 3250
EAKGNTCCTSDFVFITANQAGLTPSAV+HCKKAFENRRLILAEVTAVEGGRY
Sbjct: 241 LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300
Query: 3251 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAAD 3430
RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQ+F AAD
Sbjct: 301 RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360
Query: 3431 QIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPG 3610
QIAAEAEEGF+ AGI +PF MLK + G +TYY EE+ E+T L+ DADII SRLDP
Sbjct: 361 QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420
Query: 3611 IITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQ 3790
+ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFL+PKVTE QLE
Sbjct: 421 MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480
Query: 3791 HKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFA 3970
KRGF + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+AP L+TFA
Sbjct: 481 SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540
Query: 3971 TLGTMKAS 3994
LGTM+AS
Sbjct: 541 ALGTMRAS 548
>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
Length = 719
Score = 941 bits (2432), Expect = 0.0
Identities = 466/721 (64%), Positives = 548/721 (76%), Gaps = 20/721 (2%)
Frame = +2
Query: 248 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 427
MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD G LGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 428 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 607
RNL+VE DR + + L + D+E+ FMS+L F ++ + G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 608 YVHQAIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 781
Y+ + I++A GLDV +Y +Q + R FL DR DAE LT VVRTAIV GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 782 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 961
+FDYTGLGGD KYRFD D L++D S GL RFVSAGFTES + LT D+D MT
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238
Query: 962 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 1090
QALSDEW EW+YFEED EE L E L+ ++ + ++ +
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 1091 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 1270
P+SP VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 1271 PVGSAYTETWFVDGCLPEPWFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 1450
P G+ YTETWF+DGCLP WF RG +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 1451 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 1630
DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 1631 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 1810
NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 1811 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1990
VWDLIIKAKD+AF L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 1991 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXX 2170
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 2171 XXXXKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 2347
KEEW+REL+ASPH +PECVIDLTHMKDLL ++C+ FK+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 2348 S 2350
S
Sbjct: 719 S 719
>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
Length = 257
Score = 500 bits (1287), Expect = e-159
Identities = 238/257 (92%), Positives = 253/257 (98%)
Frame = +2
Query: 4079 GPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 4258
GPGA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1 GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60
Query: 4259 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAG 4438
YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAG
Sbjct: 61 YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120
Query: 4439 SGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 4618
SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180
Query: 4619 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASL 4798
NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240
Query: 4799 LLGEIKHPLETDRIQAS 4849
LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257
>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple latent
spherical virus]
Length = 2079
Score = 353 bits (905), Expect = 2e-94
Identities = 384/1385 (27%), Positives = 591/1385 (42%), Gaps = 90/1385 (6%)
Frame = +2
Query: 2570 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKA----DRLILQMDSRKVPGAYIT 2737
DF W V T S+ L P +RL+ +R D+ + K P +T
Sbjct: 605 DFLEWAKRVERYAGDTYDSMILNPADRLRIIRELVDQQVGFQKAFFNPRIASKAPRLMLT 664
Query: 2738 HFNNLLQSLDRALVECQQALS----VGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLD 2902
F Q L L +C ALS R P I LY ++ GKS+ L + +LD
Sbjct: 665 EF----QRLSTMLRDCHSALSRAALFDMQRVPPFWIHLYSENGGTGKSMAMMPLGNYLLD 720
Query: 2903 SLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXX 3082
S++ +T R +RN + F + Y +Q L D+FGA + + DE ++
Sbjct: 721 SIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDEFGAAPKTDYMDEVTMLDLVSPNPLTLN 780
Query: 3083 XXXXEAKGNTCCTSDFVFITANQAGLTPSAVVHCK-KAFENRRLILAEVTAVEGGRYRDR 3259
K N TS + TAN+ P + F RR ILAEV +G Y
Sbjct: 781 MAALGDK-NIMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRHILAEVVLAQGKPYFHE 839
Query: 3260 YRFTLHQKNEPYSRDD--------------RFQVMNYEQFLQYTVNQSKQHFSEQVDLRD 3397
+ + + D F + EQF+ + +NQ EQ +
Sbjct: 840 FILLKARTEQKIYLDQALREVASPIHLSPAEFYAVCAEQFVNF-LNQQGNALIEQQGVSY 898
Query: 3398 APHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEE-----RMMEVTET 3562
D + + F+ I+ T +Q + +E R E
Sbjct: 899 VRSDDFSFLKDYLQYKMGLDFQQCEIERIVTDYSLSIKNQTIFPAEHEHIFSRWRAELEA 958
Query: 3563 LTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKV 3742
L+ + + + LD + + L+ + N N P+E Y C + K
Sbjct: 959 LSLSE---LITMLDKHVTETFVYTLIKE----NHSNVVMSNLTPYECLI-YSFCKDKYKK 1010
Query: 3743 IGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLL 3922
+ EE+++Q +A+ L+ A +N P V L+L A VG L+
Sbjct: 1011 ETDATFSSLPEEEVKQ-----PWLAEFLSFTARLCLN-VPKWVTLVLALCAFCLVGYVLI 1064
Query: 3923 SWLKSLYTAPC----LLTFATLGTMKASGS-----------------LSSSQDQXXXXXX 4039
+ L+T C +L F++L S +S Q
Sbjct: 1065 KFAIGLFTGACTIFSVLAFSSLSAQGPEDSPGFENARKTAGVKVHFVKTSFQPSDWKGIN 1124
Query: 4040 XXXXXXXYLLEASGPGAVEAKAQ--DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTR 4213
+ A A+ Q D + +L KH + + ++ Y IALG
Sbjct: 1125 VKPSGFNWGDVADDDDAIPLWGQGPDQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRN 1183
Query: 4214 VLMVYHVWLELQSGCYKV-GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVL 4390
L HVW + + Y + G +N +L +DLV+V P + F L
Sbjct: 1184 FLFTKHVWDLMPTCNYGLFGYAIAKNKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSAL 1243
Query: 4391 KLEKWLLS-SHDPFMAGSGWFM-EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLK 4555
+ +L + + P +A + + E L+ V ++ ++ + L + D Y L
Sbjct: 1244 PKDIFLSNLAEAPKVANAALVVSEPLYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLG 1303
Query: 4556 GVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQK 4735
+ C YT DT G C +PL++ G G+ + + +HV
Sbjct: 1304 SKPMPACYSYTF--DTFAGL---------CTSPLISMDG-GRCV-LLGLHVA-------G 1343
Query: 4736 DTIIAGSGSLITKEEYLEASLL----LGEIKHPLETDRIQASG--CLSGEEFFDAETVFP 4897
D G ++T E++ + + G + + T R ++ G CL G ++ + F
Sbjct: 1344 DKSKMGYAQIVTLEDFSDINFSEKVGQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFL 1402
Query: 4898 EGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIF 5068
E + T + I D+ TEPAI+ +D RL +++ D F
Sbjct: 1403 E---------NSSLTPSLIHDCIDIDM--------TTEPAILSKKDPRLQYTNNKDFDPF 1445
Query: 5069 KKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDN 5245
GM KY A +E+E++++ D +F ++P C LS D+ NG+ D+
Sbjct: 1446 LSGMGKYAVEAHSF----DEDEELFEDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDD 1498
Query: 5246 EYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTL--NRDLPMYQRILDMDELCAT 5419
G+V+ T+EG+P R G GK G PG + + N L + +++ L
Sbjct: 1499 YAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGDWHIVPNSLLANELNVKELN-LSKN 1557
Query: 5420 TIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIP 5599
++G+D KDE++ SK+Y KTRLFTILP++YN LVRKYF SFV++LM LHN +P
Sbjct: 1558 IFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVP 1617
Query: 5600 TKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDD--- 5770
TKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG+TPR +L I +RI+ Y +
Sbjct: 1618 TKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSF 1677
Query: 5771 ---------QGD-RRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVR 5920
GD R LM +TR G+ L+ V+ GIPSGF LTVIVNSLVN F V
Sbjct: 1678 AITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVH 1737
Query: 5921 WSWEHMMAS---SSLF----FSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGF 6079
+++ + +S +L+ F V AV GDDNL+SV + FNL +S+ L + G
Sbjct: 1738 FAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGV 1797
Query: 6080 TLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNA 6259
TLK+G+DK++EIL F P EK DFLKR F +AP HWVR+ + +A
Sbjct: 1798 TLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHIVAPLNTVNITERLHWVRK-GLGDA 1856
Query: 6260 VATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV 6439
AT N + L E +G ELY R I+ K + +++ +L+G S
Sbjct: 1857 DATLENCKSALFEALFHG--ELYYNDLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSY 1914
Query: 6440 ASIFE 6454
A +
Sbjct: 1915 AKAIQ 1919
>gb|AAZ76594.1| polyprotein, partial [Stocky prune virus]
Length = 795
Score = 321 bits (823), Expect = 1e-89
Identities = 220/609 (36%), Positives = 318/609 (52%), Gaps = 31/609 (5%)
Frame = +2
Query: 4619 NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITKEEYL 4786
+ + CG A G G G+ + ++H + ++ + G G+ +T+E+ +
Sbjct: 22 HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81
Query: 4787 EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SGAPRQATTSEI 4951
+LL D + CL E + V G L+ S AP + +++
Sbjct: 82 GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132
Query: 4952 KKSSISADLEALTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 5122
++S IS D+ L E T PAII N D R+ + D+F GM KYK +A V
Sbjct: 133 ERSLIS-DIVDLPCE---TVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188
Query: 5123 -EEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 5299
+E++ + D IFD +SE+ L G+ + +V STSEG+P +L
Sbjct: 189 GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248
Query: 5300 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLS 5476
R +G GK L G+PGC++++ + +++ L +P ++G++ KDER+
Sbjct: 249 RPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVARK 308
Query: 5477 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 5656
K+ KTRLFT+LP EYN LVR+YF FV++ M+ HN P KVGINP +WT L + +
Sbjct: 309 KVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYENL 368
Query: 5657 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR------RLHLMLAATTRL 5818
+KGTNWFNGD+ RFDG+TPR +++++ RI LY DR R LML A+ R
Sbjct: 369 RSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDRY 428
Query: 5819 GVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASS-------SLFFSDCVE 5977
+AG LY+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ +S V
Sbjct: 429 AIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVH 488
Query: 5978 LAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNP-PEKCDFL 6154
AV GDDNLVSV + +S +NL +SSFL + G LK+G K +E P F+P P CDFL
Sbjct: 489 FAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFL 548
Query: 6155 KRCF-KARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE--LFHYGDKEL 6325
KR F R LAP HWVR++ Q NV+G LRE F E
Sbjct: 549 KRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEF 607
Query: 6326 YCKWRRDLI 6352
+ RR L+
Sbjct: 608 FHDMRRKLL 616
>ref|YP_009220374.1| polyprotein [Currant latent virus] gi|966557892|gb|ALT45950.1|
polyprotein [Currant latent virus]
Length = 2124
Score = 335 bits (858), Expect = 9e-89
Identities = 280/828 (33%), Positives = 401/828 (48%), Gaps = 46/828 (5%)
Frame = +2
Query: 4109 DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVG--SLTK 4282
+++ + +L KH + F + D Y IALGG L+ HV+ + Y + ++TK
Sbjct: 1203 ELDQSVINLLKHQVVFIN-DMTKVVYNAIALGGRNFLITKHVFDLMPVANYSLYGYAITK 1261
Query: 4283 TFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFM--E 4456
+ NR + Q L +DLVIV+ P T F L + +L + + + + E
Sbjct: 1262 PKIWIDNRVRPKIQ-LKDRDLVIVEMPLTVPCFSSLPKDIFLKNMQEAPKQVNAVLVIAE 1320
Query: 4457 MLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 4627
+ G V ++ ++ +T L D Y L + + C YT DT
Sbjct: 1321 PNYEGKSVAKLVQKFQPFTNLPQVHAKDTYSCGSLGSLRMPPCYSYTF--DT-------- 1370
Query: 4628 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLG 4807
Y C +PL+ G G+ + + +HVV + S T G ++T +++ E L
Sbjct: 1371 -YPGLCTSPLICMSG-GRCI-LLGLHVVGNMSKT-------GFSQIVTLDDFSEVPL--- 1417
Query: 4808 EIKHPLETDRIQASGCLSGE--EFFDAETVFPE--GLLEPSG-----APRQATTSEIKKS 4960
SG L GE E + T E G + G AP + + S
Sbjct: 1418 ------------QSGTLVGEGPECYCIPTASSECYGSVTKLGKWTGPAPYFLEKTSLVPS 1465
Query: 4961 SISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEE 5131
IS D++ + TEPAI+ +D RL +D + FK GMLKY A + E+
Sbjct: 1466 MISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYAVEAHGFN----ED 1517
Query: 5132 EKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 5308
E+ ++ D +F ++P + C L++DE NG+ D +V+ TSEG+P R
Sbjct: 1518 EEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQTSEGYPFCTQRPA 1574
Query: 5309 GEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERLPLSKIY 5485
G GK G PG + + ++ + M+ L ++G+D KDE++ SK+Y
Sbjct: 1575 GATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGIDFPKDEKVDKSKVY 1634
Query: 5486 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 5665
KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL +W IL + AK
Sbjct: 1635 IKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLSNEWGILQFALSAK 1694
Query: 5666 GTNWFNGDYSRFDGVTPRCLLIEIARRI---------------TLLYNDDQGDRRLHLML 5800
G NWFNGDYSRFDG+TPR +L+ I +RI TL N D R LM
Sbjct: 1695 GENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSINGDLA--RSLLMD 1752
Query: 5801 AATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSS-------LF 5959
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ + S+
Sbjct: 1753 MASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYMSICKKSNDMDLYPLYS 1812
Query: 5960 FSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPE 6139
F V AV GDDN+VSV ++ +FNL L+ FL D+G TLK+G+DK +EIL F P
Sbjct: 1813 FKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGADKDEEILSPFYPIS 1872
Query: 6140 KCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDK 6319
K DFLKR F ++P HWVR+ M+ A N + E +G
Sbjct: 1873 KVDFLKRKFTVLQGHVVSPLNRINITERLHWVRK-GMTEVDAIVENCQSAAFEAVFHG-- 1929
Query: 6320 ELYCKWRRDLI-DLCSKN--RVPHPTTYSFEELERSWLSGKSVASIFE 6454
E Y K +I C+KN V PT F++ LSG S A+ +
Sbjct: 1930 EHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAIQ 1974
>gb|AHN52254.1| polyprotein, partial [Currant latent virus]
Length = 721
Score = 306 bits (783), Expect = 4e-85
Identities = 211/541 (39%), Positives = 287/541 (53%), Gaps = 30/541 (5%)
Frame = +2
Query: 4922 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 5092
AP + + S IS D++ + TEPAI+ +D RL +D + FK GMLKY
Sbjct: 50 APYFLEKTSLVPSMISKDIDI----EMTTEPAILTTKDPRLAHSNDPDFNPFKAGMLKYA 105
Query: 5093 AVAADMSPVTEEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVS 5269
A + E+E+ ++ D +F ++P + C L++DE NG+ D +V+
Sbjct: 106 VEAHGFN----EDEEFFEDALDRVFSEIP---DFNCQELADDEVCNGIEDDPYAEPLVMQ 158
Query: 5270 TSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLD 5446
TSEG+P R G GK G PG + + ++ + M+ L ++G+D
Sbjct: 159 TSEGYPFCTQRPAGATGKSWLFCGSPGDWHILPGSLLHNEMNKMERNLSQGIFEPVIGID 218
Query: 5447 TAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLG 5626
KDE++ SK+Y KTRLFTILP+ YN LVRKYF SFV++LM LHN PTKVGINPL
Sbjct: 219 FPKDEKVDKSKVYIKPKTRLFTILPVHYNILVRKYFLSFVSQLMALHNETPTKVGINPLS 278
Query: 5627 YDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI---------------TLLY 5761
+W IL + AKG NWFNGDYSRFDG+TPR +L+ I +RI TL
Sbjct: 279 NEWGILQFALSAKGENWFNGDYSRFDGITPRSVLLGIVKRISNRFVNKNSLAITDKTLSI 338
Query: 5762 NDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMM 5941
N D R LM A+TR G+ L+ V+ GIPSGF LTVIVNSLVN F + +++ +
Sbjct: 339 NGDLA--RSLLMDMASTRYGLTQGDLWYVNSGIPSGFPLTVIVNSLVNSFFIHYAYRSIC 396
Query: 5942 ASSS-------LFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSD 6100
S+ F V AV GDDN+VSV ++ +FNL L+ FL D+G TLK+G+D
Sbjct: 397 KKSNDMDLYPLYSFKQLVSYAVYGDDNIVSVNDLIKDKFNLVILADFLKDYGVTLKNGAD 456
Query: 6101 KSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNV 6280
K +EIL F P K DFLKR F ++P HWVR+ M+ A N
Sbjct: 457 KDEEILSPFYPISKVDFLKRKFTVLQGHVVSPLNRINITERLHWVRK-GMTEVDAIVENC 515
Query: 6281 EGFLRELFHYGDKELYCKWRRDLI-DLCSKN--RVPHPTTYSFEELERSWLSGKSVASIF 6451
+ E +G E Y K +I C+KN V PT F++ LSG S A+
Sbjct: 516 QSAAFEAVFHG--EHYYKDICGVIKKACTKNGITVDLPT---FQDALNIHLSGGSFATAI 570
Query: 6452 E 6454
+
Sbjct: 571 Q 571
>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
Length = 709
Score = 303 bits (775), Expect = 4e-84
Identities = 199/509 (39%), Positives = 282/509 (55%), Gaps = 26/509 (5%)
Frame = +2
Query: 5006 TEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DL 5173
TEPAI+ +D RL +++ D F GM KY A +E+E++++ D +F ++
Sbjct: 52 TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107
Query: 5174 PGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGC 5353
P C LS D+ NG+ D+ G+V+ T+EG+P R G GK G PG
Sbjct: 108 P---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164
Query: 5354 YTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 5527
+ + N L + +++ L ++G+D KDE++ SK+Y KTRLFTILP++
Sbjct: 165 WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223
Query: 5528 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 5707
YN LVRKYF SFV++LM LHN +PTKVGI+P+ +W+IL +H+KGTNWFNGDYSRFDG
Sbjct: 224 YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283
Query: 5708 VTPRCLLIEIARRITLLYNDD------------QGD-RRLHLMLAATTRLGVAGIGLYRV 5848
+TPR +L I +RI+ Y + GD R LM +TR G+ L+ V
Sbjct: 284 ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343
Query: 5849 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---SSLF----FSDCVELAVVGDDNLV 6007
+ GIPSGF LTVIVNSLVN F V +++ + +S +L+ F V AV GDDNL+
Sbjct: 344 TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403
Query: 6008 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 6187
SV + FNL +S+ L + G TLK+G+DK++EIL F P EK DFLKR F
Sbjct: 404 SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463
Query: 6188 LAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 6367
+AP HWVR+ + +A AT N + L E +G ELY R I+ K
Sbjct: 464 VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGKIEKACK 520
Query: 6368 NRVPHPTTYSFEELERSWLSGKSVASIFE 6454
+ +++ +L+G S A +
Sbjct: 521 VKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549
>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
Length = 707
Score = 296 bits (758), Expect = 6e-82
Identities = 188/478 (39%), Positives = 262/478 (54%), Gaps = 26/478 (5%)
Frame = +2
Query: 4952 KKSSISADLEALTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVT 5122
K S I + + +R TEPAI+ RD RL D D+F +GM KY A +
Sbjct: 34 KTSLIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL---- 89
Query: 5123 EEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 5299
+E+ ++++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P
Sbjct: 90 DEDLEVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQ 146
Query: 5300 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLS 5476
R G +GK G PG + + + + + + + ++G+D KDE++ S
Sbjct: 147 RPAGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSS 206
Query: 5477 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 5656
K+Y KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++
Sbjct: 207 KVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQL 266
Query: 5657 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LM 5797
+KGTNWFNGDYSRFDG+TPR +L I +RI YN+ D L L
Sbjct: 267 RSKGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLT 326
Query: 5798 LAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL------- 5956
A+TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L
Sbjct: 327 DMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLH 386
Query: 5957 FFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPP 6136
F V A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P
Sbjct: 387 SFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPL 446
Query: 6137 EKCDFLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 6307
EK DFLKR F +AP HW+R+ + A AT N E LFH
Sbjct: 447 EKVDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503
>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
Length = 2235
Score = 312 bits (800), Expect = 7e-82
Identities = 249/772 (32%), Positives = 370/772 (47%), Gaps = 34/772 (4%)
Frame = +2
Query: 4094 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCY--KV 4267
E ++ L +L KH + + + Y IALGG L+ HVW +L C
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360
Query: 4268 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 4447
G + + +L +DLVIV P + F L + +L + +
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420
Query: 4448 FM--EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTG 4612
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475
Query: 4613 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEA 4792
Y C +PL+A G G+ + I +HVV D G ++T +++ +
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVV-------GDRSKMGYAQIVTLDDFSDV 1520
Query: 4793 SLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISA 4972
+L +D++ G E + + G + GA ++K+++
Sbjct: 1521 AL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTTLIP 1567
Query: 4973 DLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEEKI 5140
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+ ++
Sbjct: 1568 SLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623
Query: 5141 WDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 5317
++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P R G +
Sbjct: 1624 FEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680
Query: 5318 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 5494
GK G PG + + + + + L ++G+D KDE++ SK+Y
Sbjct: 1681 GKSWLFAGAPGDWHIVPGSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKP 1740
Query: 5495 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 5674
KTRLFTILP++YN LVRKYF SFV+ +M HN IP KVGI+ L +W+IL ++ +KGTN
Sbjct: 1741 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1800
Query: 5675 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAATTR 5815
WFNGDYSRFDG+TPR +L I +RI YN+ D L LM A+TR
Sbjct: 1801 WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTR 1860
Query: 5816 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSDCV 5974
G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F V
Sbjct: 1861 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1920
Query: 5975 ELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFL 6154
A GDDNLVSV ++ FNL K++ LA+ G TLK+G+DK++EIL F P EK DFL
Sbjct: 1921 AYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1980
Query: 6155 KRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 6307
KR F +AP HW+R+ + A AT N E LFH
Sbjct: 1981 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031
Score = 72.8 bits (177), Expect = 7e-09
Identities = 65/230 (28%), Positives = 97/230 (42%), Gaps = 6/230 (2%)
Frame = +2
Query: 2570 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2737
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 766 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 825
Query: 2738 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2914
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 826 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNYMLDAIGE 885
Query: 2915 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3094
+T R +RN + F + Y+++ L D+FGA + + DE ++
Sbjct: 886 PKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 945
Query: 3095 EAKGNTCCTSDFVFITANQAGLTPSAVVHCK-KAFENRRLILAEVTAVEG 3241
K NT TS + TAN+ P + F RR ILAEV V G
Sbjct: 946 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 994
>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
gi|82002707|sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1
polyprotein; AltName: Full=Genome polyprotein B; AltName:
Full=P1; Contains: RecName: Full=Protease cofactor;
Contains: RecName: Full=Putative helicase; AltName:
Full=Membrane-binding protein; AltName: Full=NTP-binding
protein; Short=NTB; Contains: RecName: Full=Viral
genome-linked protein; AltName: Full=VPg; Contains:
RecName: Full=Picornain 3C-like protease; Short=3C-like
protease; Contains: RecName: Full=RNA-directed RNA
polymerase gi|50399319|emb|CAF21713.1| polyprotein
[Cherry rasp leaf virus]
Length = 2250
Score = 307 bits (787), Expect = 2e-80
Identities = 248/774 (32%), Positives = 371/774 (47%), Gaps = 36/774 (4%)
Frame = +2
Query: 4094 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 4261
E ++ L +L KH + + + Y IALGG L+ HVW +L C Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375
Query: 4262 KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGS 4441
+ + C +L +DLVIV P + F L + +L + +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433
Query: 4442 GWFM--EMLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 4606
+ + LF V ++ + + L + D Y L + C Y +T
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490
Query: 4607 TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYL 4786
Y C +PL+A G G+ + I +HVV D G ++T +++
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533
Query: 4787 EASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSI 4966
+ +L +D++ G E + + G + GA ++K+S+
Sbjct: 1534 DVAL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTSL 1580
Query: 4967 SADLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEE 5134
L + + + +R TEPAI+ RD RL D D+F +GM KY A + +E+
Sbjct: 1581 IPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636
Query: 5135 KIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 5311
++++ D +F ++P E C L+ D+ NG+ D G+V+ T+EG+P R G
Sbjct: 1637 EVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693
Query: 5312 EAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKIYQ 5488
+GK G PG + + + + + + + ++G+D KDE++ SK+Y
Sbjct: 1694 ASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYI 1753
Query: 5489 DVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKG 5668
KTRLFTILP++YN LVRKYF S V+ +M HN IP KVGI+ L +W+IL ++ +KG
Sbjct: 1754 KPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKG 1813
Query: 5669 TNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAAT 5809
TNWFNGDYSRFDG+TPR +L I +RI YN+ D L L A+
Sbjct: 1814 TNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAS 1873
Query: 5810 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSD 5968
TR G+ L+ V+ GIPSGF LTVIVNSLVN+F + +S+ +M L F
Sbjct: 1874 TRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ 1933
Query: 5969 CVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCD 6148
V A GDDNLVSV ++ +FNL K++ LA+ G TLK+G+DK++EIL F P EK D
Sbjct: 1934 MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVD 1993
Query: 6149 FLKRCFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRE-LFH 6307
FLKR F +AP HW+R+ + A AT N E LFH
Sbjct: 1994 FLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046
Score = 75.1 bits (183), Expect = 1e-09
Identities = 66/230 (28%), Positives = 97/230 (42%), Gaps = 6/230 (2%)
Frame = +2
Query: 2570 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 2737
DF W +V T S+ + P ERLK LR D+ + + K P +T
Sbjct: 781 DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 840
Query: 2738 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 2914
FN L L A +A + R P + LY ++ GKS+ L + +LD++
Sbjct: 841 EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 900
Query: 2915 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXX 3094
+T R +RN + F + Y++Q L D+FGA + + DE ++
Sbjct: 901 PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 960
Query: 3095 EAKGNTCCTSDFVFITANQAGLTPSAVVHCK-KAFENRRLILAEVTAVEG 3241
K NT TS + TAN+ P + F RR ILAEV V G
Sbjct: 961 GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 1009
>ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523|gb|AFI74271.1|
polyprotein [Arracacha virus B]
Length = 2314
Score = 303 bits (777), Expect = 4e-79
Identities = 256/793 (32%), Positives = 377/793 (47%), Gaps = 39/793 (4%)
Frame = +2
Query: 4118 SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 4291
SEL S KH+ +I + Y + + G + L V HV+ + G Y+ VG
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288
Query: 4292 FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDP--------FMAGSGW 4447
F NR + + L KDL IV T P L K LL + F S
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVP--PFAPLAKRLLFDEEEKLPRQALGFFCHSEP 1346
Query: 4448 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 4627
++E L R +G+ ++ + T+ + D+ + L K +Y + G
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398
Query: 4628 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKE-EYLEASLLL 4804
CG L+ G+KI +H + K +I + ++ ++ E S +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446
Query: 4805 GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEA 4984
GE + L C +GE A EGL P T + + S IS+DL+
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496
Query: 4985 LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDL 5149
+ PAI+H+RD R+ + D FK GMLKY A E+ + D
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556
Query: 5150 TWDSIFDLPGGIERK-------CHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 5308
+ I DL E + C +L+E++ LNG + +V T+EG+P R
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616
Query: 5309 GEAGKERFLLGLPGCYTLNRDLPMYQRILDM-DELCATTIPCIVGLDTAKDERLPLSKIY 5485
G++GK L G+PG ++L ++ P+ I + D L ++G+D KDE++ +K+
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676
Query: 5486 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 5665
K RLFTILP YN +VR+++ FVA LM+ HN P KVG+N +W L ++ A
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736
Query: 5666 GTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGD-----RRLHLMLA-------AT 5809
G NWFNGDYSRFDG+TPRC+L +A RI+ Y D+ +++ +A A
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796
Query: 5810 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---SSSLFFSDCVEL 5980
+R G+AG+G+Y+VS GIPSGF LTVIVNSLVN F + +++ +M+ S +F+ V
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856
Query: 5981 AVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKR 6160
AV GDDNLVSV E + +NLK ++ FL FG TLK+G++K +EIL F P E DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916
Query: 6161 CFKARGDRYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWR 6340
F L HWVR+ A +N L E +G E Y R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974
Query: 6341 RDLIDLCSKNRVP 6379
L+ + K ++P
Sbjct: 1975 SKLVRVLGKRKLP 1987
Score = 63.9 bits (154), Expect = 4e-06
Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 4/240 (1%)
Frame = +2
Query: 2561 VGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKD--KADRLILQMDSRKVPGAYI 2734
V DFQ W V + T + + P +RL+ LR D K IL M P
Sbjct: 669 VDKDFQTWSEGVRDYAFETWKAAEIPPIQRLEILRGLDDTRKDFEKILMMPGVNPPEYLR 728
Query: 2735 THFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGD-SHVGKSVCSQYLIDDVLDSLD 2911
F+ +L + E +A R P I+LY GKS C+ L + +LDS +
Sbjct: 729 RCFDACSTALRERIAELSRAAMFDISRIPPFWIYLYSARGGTGKSTCAIPLANKILDSAN 788
Query: 2912 YAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXX 3091
+ R+ +RN + S+ + Y +Q ++ D+FGA E + II
Sbjct: 789 EPKGARICTRNAASSYLNGYAHQPCLIMDEFGAQGEHHATPDERIILDYVSATPMIPNMA 848
Query: 3092 XEAKGNTCCTSDFVFITANQAGLTPSA-VVHCKKAFENRRLILAEVTAVEGGRYRDRYRF 3268
S + T+N P + + K F RR I AEV A G ++ F
Sbjct: 849 AVNDKTIMFNSKLIISTSNFPNGNPKVDLGNNKTGFLRRRKIFAEVAAPLPGEQFPQFSF 908
>gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
Length = 2223
Score = 273 bits (698), Expect = 7e-70
Identities = 198/572 (34%), Positives = 297/572 (51%), Gaps = 27/572 (4%)
Frame = +2
Query: 4949 IKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEE 5128
++KS I + + G TEP+I+ + D R D + KG+ K+ A T E
Sbjct: 1165 LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNETACCFDHETVE 1223
Query: 5129 ---EEKIWDLTWDSI-FDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVL 5296
+ DL + + D+PGG K + SE E LNG+ G+ Y M +ST+ G+P L
Sbjct: 1224 VALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDMSTACGYPYTL 1280
Query: 5297 NRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERL 5467
+ E GK + +L G PG Y L+R+ P++ +++DE + I IV + AKDERL
Sbjct: 1281 S----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIVSCECAKDERL 1336
Query: 5468 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 5647
PL KIYQ KTRLFTILP YN LVRKYF F A LM+ HN +P KVGINP G +WT+L
Sbjct: 1337 PLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGINPSGLEWTVLA 1396
Query: 5648 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR----RLHLMLAATTR 5815
K F+ DYS FDG P + + Y D G R L++ A+
Sbjct: 1397 KNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLARHALLMMASNH 1456
Query: 5816 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM----------MASSSLFFS 5965
L + G L+RV GG+PSGF+LTV+ NSL+N F +R+++E + M + FS
Sbjct: 1457 LTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITRTMGMTQRTFS 1516
Query: 5966 DCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILP-EFNPPEK 6142
+ + +A+ GDDNLV+V + ++L ++ L +K+G DK++++ +F P +
Sbjct: 1517 E-LFIAIYGDDNLVAV-PLHLRWYSLPAIAEELQKVNVVIKNGLDKNQDVAQVQFQPLGE 1574
Query: 6143 CDFLKRCFKARG-DRYLAPXXXXXXXXXXHWVRETNMSNAV-ATQNNVEGFLRELFHYGD 6316
FL R F+ Y AP W+R T + + A N+EG LRE + +G
Sbjct: 1575 LTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEGSLREAYMHG- 1633
Query: 6317 KELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV---ASIFEKEESEVVVIRD 6487
K ++ +R ++ + ++ R+P T FEELER W+S + ++ E E E++ +
Sbjct: 1634 KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEPSEHELLSL-- 1691
Query: 6488 GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCG 6583
P V + V+Q + VP V +CG
Sbjct: 1692 ------PTVEQLTVEQYSREINEFVPGVHFCG 1717
Score = 93.2 bits (230), Expect = 5e-15
Identities = 92/359 (25%), Positives = 145/359 (40%), Gaps = 16/359 (4%)
Frame = +2
Query: 2672 KDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDS 2851
KDKA + V FN + LD+ L + Q VG++R P C+ LYG
Sbjct: 344 KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403
Query: 2852 HVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHF 3031
GK++ ++I+D+L+ L T R++S + D +WS Y +Q AVL DDFG + + +
Sbjct: 404 GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAANQ 463
Query: 3032 DEA--EIIRXXXXXXXXXXXXXXEAKGNTCCTSDFVFITANQAGLTPSAVVHCKKAFENR 3205
++ + I E KG T TS ++F+T+NQA + V A + R
Sbjct: 464 NDGVKDFIFMKSSAPMSLSMAAVEEKG-TQFTSRYIFLTSNQATPPRTVGVMDLGAIQRR 522
Query: 3206 RLILAEV-----------TAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTV 3352
R +L EV T V+ FT+ +P+ R D Y + L
Sbjct: 523 RNLLIEVERHGPIDETCETPVQ------NITFTVRDPLDPHRRIDGLSDKTYLEILDIIE 576
Query: 3353 NQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYS 3532
+ H+++ L+ GI+ S D+LT
Sbjct: 577 EACRNHWAKDAWLKTFG---------------------KGIERKLQAQVDTSDDELTDSD 615
Query: 3533 EERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAY---VNLKNHFGLGTDPFE 3700
+ M D I R II++ ++ + AY +NL+N F +GT P E
Sbjct: 616 DPLMPPTRGGQEYNDNQIKRIE----IISRSFRLSSFQCAYSGLLNLENPFEVGTLPHE 670
>ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt virus 1]
Length = 699
Score = 255 bits (651), Expect = 5e-68
Identities = 171/491 (34%), Positives = 250/491 (50%), Gaps = 14/491 (2%)
Frame = +2
Query: 4922 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 5092
+P S K S + +E P+I+ D RL + D F GM KY
Sbjct: 27 SPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA 86
Query: 5093 AVAADMSP-----VTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRG 5257
A P V E + W D P +E LNG+ +
Sbjct: 87 KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAA---------LNGIENMEYFDA 137
Query: 5258 MVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIV 5437
+V+STSEG+P L+RK GE GK R++ G PG + D + I +E+ T +P +
Sbjct: 138 LVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEIT-DERILADIHWFEEISKTQVPDLY 196
Query: 5438 GLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGIN 5617
++ KDERLP+ K+ ++ K+RLFT+LPM YN +RK F +FV +MK +V+P +VGIN
Sbjct: 197 CIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGIN 256
Query: 5618 PLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRR--LH 5791
P W + R+ KG + DYSRFDG P+C++++IA + + + +R +
Sbjct: 257 PYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKN 316
Query: 5792 LMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLF---F 5962
LMLA +R + G LYRV GIPSGF LTVIVNS++N L+++++ + SL F
Sbjct: 317 LMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHF 376
Query: 5963 SDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEK 6142
V + V GDDNL+SV E +S+FN L +F+ + G + DG DK+K + EF E
Sbjct: 377 DTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTK-VGIEFRTIED 435
Query: 6143 CDFLKRCFKARGD-RYLAPXXXXXXXXXXHWVRETNMSNAVATQNNVEGFLRELFHYGDK 6319
CDFLKR FK D + H+V+ + + A +N LREL+ G
Sbjct: 436 CDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELW-LGSP 494
Query: 6320 ELYCKWRRDLI 6352
E +RR++I
Sbjct: 495 EKAAAFRREVI 505
>ref|YP_002158831.1| unnamed protein product [Mikania micrantha mosaic virus]
Length = 474
Score = 248 bits (632), Expect = 7e-68
Identities = 162/453 (35%), Positives = 240/453 (52%), Gaps = 15/453 (3%)
Frame = +2
Query: 5012 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSP-----VTEEEEKIW-DLTWDSI 5164
P+++ D RL + D F GM KY A V EE ++ W D D
Sbjct: 21 PSVLGRNDPRLAGTMNADYDPFSVGMTKYAKEAGPFDADTLVAVCEEIKETWYDARGDFT 80
Query: 5165 FDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGL 5344
F+ +S + LNGV + +V+STSEG+P L R G+ GK R++ G
Sbjct: 81 FEE----------VSLEVALNGVANLEYFDAIVLSTSEGYPYRLERNPGDKGKARYVEGD 130
Query: 5345 PGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPM 5524
G YT++ D M + I +E +P + ++ KDERLP K+ + K+RLFT+LPM
Sbjct: 131 AGDYTIS-DKQMLEDITWFEEESKMRVPDLYCIECVKDERLPKRKVLEKPKSRLFTVLPM 189
Query: 5525 EYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFD 5704
YN ++RK F +FV M +V+P +VG+NP +W+ + ++ KG N DYSRFD
Sbjct: 190 SYNLVIRKKFLNFVRFFMTRRDVLPCQVGVNPYSREWSRIACKLLEKGNNILCCDYSRFD 249
Query: 5705 GVTPRCLLIEIARRITLLY--NDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFAL 5878
G P+C++++I + I ND++ + +L+LA T R + LYRV GIPSGF L
Sbjct: 250 GFLPKCIMLKIGQLIGSFMGKNDEEVTQICNLLLACTGRYAICEKLLYRVENGIPSGFPL 309
Query: 5879 TVIVNSLVNHFLVRWSWEHMMASSSLF---FSDCVELAVVGDDNLVSVKEIAASEFNLKK 6049
TVIVNS++N LV++++ A + + F V L V GDDNL+SV + +S+FN +
Sbjct: 310 TVIVNSILNEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEF 369
Query: 6050 LSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGD-RYLAPXXXXXXXXXX 6226
L F T+ DG DK+K+ + F CDFLKR FK D ++ P
Sbjct: 370 LVDFFLRLSITVTDGVDKTKQGI-SFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQL 428
Query: 6227 HWVRETNMSNAVATQNNVEGFLRELFHYGDKEL 6325
H+VR + A A N+ LREL+ +G +E+
Sbjct: 429 HFVRAKKLEMADAYVANLNNILRELWLHGSEEV 461