BLASTX nr result
ID: Rehmannia28_contig00000026
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia28_contig00000026
(8273 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACH73184.1| replicase polyprotein [Dweet mottle virus] 1833 0.0
ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus... 1833 0.0
gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotc... 1827 0.0
gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotc... 1827 0.0
gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus] 1800 0.0
gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus] 1798 0.0
gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus] 1798 0.0
gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus] 1795 0.0
gb|AKN08994.1| replicase [Caucasus prunus virus] 1187 0.0
gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotc... 944 0.0
gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotc... 940 0.0
ref|YP_008997790.1| replication-associated polyprotein [Apricot ... 943 0.0
gb|AKN08998.1| replicase [Apricot vein clearing associated virus] 941 0.0
gb|AKN09002.1| replicase [Apricot vein clearing associated virus] 941 0.0
ref|YP_009103999.1| ORF1 [Carrot betaflexivirus 1] gi|558698257|... 666 0.0
gb|AGK63259.1| replicase [Cherry mottle leaf virus] 664 0.0
ref|NP_062428.1| replicase [Cherry mottle leaf virus] gi|9294781... 660 0.0
ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf ... 653 0.0
gb|ACH73185.1| movement protein [Dweet mottle virus] 598 0.0
ref|NP_624334.1| movement protein [Citrus leaf blotch virus] gi|... 597 0.0
>gb|ACH73184.1| replicase polyprotein [Dweet mottle virus]
Length = 1962
Score = 1833 bits (4749), Expect = 0.0
Identities = 985/1887 (52%), Positives = 1256/1887 (66%), Gaps = 42/1887 (2%)
Frame = +3
Query: 45 SINNSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFF 224
S+NNS+ + +N ++ +DV RY E +F S FSR K L ++ FF
Sbjct: 129 SLNNSHTSF--INRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFF 184
Query: 225 HDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFP 404
HDE+HHW+K +F FL + +R +F+VVYPPEIL + NSQNPK+Y FK+ + RLFFFP
Sbjct: 185 HDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFP 244
Query: 405 DGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFN 584
DGV +E YEQ N+ WLF +L GD WT+ RH S YAHHLFEI G L T+S FF+
Sbjct: 245 DGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFS 304
Query: 585 DFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI 764
D++ +DM IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI
Sbjct: 305 DYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI 364
Query: 765 KEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLY 944
KEFLFFEQ CKRLIER TS+G+FGH+ E L ++ LP + R WK N FEFL+
Sbjct: 365 KEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLF 424
Query: 945 DLGTLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERV 1124
LGTL ++VER VC+ H+++ + F+VV D + +LDPL RVDDGYLER+
Sbjct: 425 SLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERI 484
Query: 1125 RIPFFNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FL 1283
R+PF+N + D ++K + + L + + ER+ S + +I W+ +++ F+
Sbjct: 485 RLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFI 544
Query: 1284 SFSKAVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGV 1463
S S F E + GK D K+ + CT L+ L F +
Sbjct: 545 SNSITEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----L 583
Query: 1464 EPEGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE---------- 1613
EGLD F+ + +H ++ LK AG + + DE E +T E
Sbjct: 584 CAEGLDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILAD 630
Query: 1614 --GGTKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVP 1769
G K+ E + + E G Q ++ + ++NY ++F C HG+ I P
Sbjct: 631 PLGFMKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTP 689
Query: 1770 ADGNCFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYC 1940
+DGNCFF+A F++ P R + + +L+E NG + L E IRPNGV+ E E IY
Sbjct: 690 SDGNCFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYL 748
Query: 1941 YARFRNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDL 2099
+ FR V +++H + + + G +EGH++ RGNHF+ + Y+ + S + D+
Sbjct: 749 FCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDI 808
Query: 2100 PIIYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEI 2279
P + E E+ F F F+C ++GR++AF+ T + DYGHNGMVYP N W+ S++EI
Sbjct: 809 PCGFSE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLEEI 865
Query: 2280 IKICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRD 2459
I+IC D+N AL+ FY+ S LG+HRDNE+VY DDPILTV G F++EF+ V
Sbjct: 866 IQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTS 925
Query: 2460 VEMHDASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNM 2639
M SF +MPKG QK+ARH V R+SITFRKHVR L+G+ I+ E + KN
Sbjct: 926 FLMTAGSFFLMPKGFQKKARHSVSNEMPRVSITFRKHVRRLNGSPIAIREENY----KNT 981
Query: 2640 CLIEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD 2819
CLI A ++ +K + L++ + WS + E +G ++ DC EAL + ++++ +
Sbjct: 982 CLINAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVN 1041
Query: 2820 EKISVMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK--- 2990
K V+ G + + + H++++ + R+ SH +KGNVNV++G E +S
Sbjct: 1042 GKYVVLGKGALRISMALKNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVG 1101
Query: 2991 VEHYNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLY 3170
N IQF A E L SFL TTGI LG+ LDNG K+F H L K +
Sbjct: 1102 AAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGTDV 1159
Query: 3171 HCLTGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETF 3350
+ GFAGSGKSR +Q WL RKKGNF VV PR L DW FKL EP + KV TFE F
Sbjct: 1160 TMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKF 1219
Query: 3351 IKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHIL 3530
IK +KSKLDLI++DELTLFPNGYLD L +EL + +++L+FDPLQARYHN+ D IL
Sbjct: 1220 IKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESIL 1279
Query: 3531 DFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRES 3710
FEHDVD L G + ++Y+Y + R+++ F+ F + + ++W+ + SI
Sbjct: 1280 TFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSI 1339
Query: 3711 FGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFV 3887
D+++P DVLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW V
Sbjct: 1340 CSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMV 1399
Query: 3888 ALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEF 4067
ALTRA+ R S C + LGG+++F V K L L+ EKI +L M + NL+ + E
Sbjct: 1400 ALTRARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKEN 1459
Query: 4068 GCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQC 4247
GC DE+DREERL GDPFLKPFI+LGQRI + E E + EP CQTHL+I+EPNF C
Sbjct: 1460 GCR-DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLC 1518
Query: 4248 YNFDLIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDD 4418
YNFD IR KE+REYREDMLVT+QFCDSY+ I G R T GP+RFKAIYPKHS DD
Sbjct: 1519 YNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDD 1575
Query: 4419 MTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFE 4598
MTFWMAV+KRL+FREE EN RL AHL+GGLLY NFK+ ++F DQ LLE+ N FE
Sbjct: 1576 MTFWMAVRKRLIFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFE 1635
Query: 4599 IKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLIL 4778
KKL+KS TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLIL
Sbjct: 1636 KKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLIL 1695
Query: 4779 VQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDE 4958
VQFAPWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDE
Sbjct: 1696 VQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDE 1755
Query: 4959 YILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFT 5138
YILSFE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT
Sbjct: 1756 YILSFEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT 1815
Query: 5139 MCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQY 5318
MCRYEWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT Y
Sbjct: 1816 MCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPY 1875
Query: 5319 GIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATV 5498
GIVKEPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA V
Sbjct: 1876 GIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVV 1935
Query: 5499 RFIVTHLDKLKTKVRLLFEEQSSEEDI 5579
RFIVTH+DKLKTKVR LF EQSS+EDI
Sbjct: 1936 RFIVTHIDKLKTKVRDLFLEQSSDEDI 1962
>ref|NP_624333.1| replicase polyprotein [Citrus leaf blotch virus]
gi|81964041|sp|Q91QZ3.1|RDRP_CLBVS RecName: Full=RNA
replication polyprotein; AltName: Full=ORF1 protein;
Includes: RecName: Full=Viral methyltransferase;
Includes: RecName: Full=Putative Fe(2+) 2-oxoglutarate
dioxygenase; Includes: RecName: Full=Protease; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|14270249|emb|CAC39422.1|
hypothetical protein [Citrus leaf blotch virus]
Length = 1962
Score = 1833 bits (4748), Expect = 0.0
Identities = 985/1887 (52%), Positives = 1256/1887 (66%), Gaps = 42/1887 (2%)
Frame = +3
Query: 45 SINNSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFF 224
S+NNS+ + +N ++ +DV RY E +F S FSR K L ++ FF
Sbjct: 129 SLNNSHTSF--INRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFF 184
Query: 225 HDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFP 404
HDE+HHW+K +F FL + +R +F+VVYPPEIL + NSQNPK+Y FK+ + RLFFFP
Sbjct: 185 HDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFP 244
Query: 405 DGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFN 584
DGV +E YEQ N+ WLF +L GD WT+ RH S YAHHLFEI G L T+S FF+
Sbjct: 245 DGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFS 304
Query: 585 DFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI 764
D++ +DM IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI
Sbjct: 305 DYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI 364
Query: 765 KEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLY 944
KEFLFFEQ CKRLIER TS+G+FGH+ E L ++ LP + R WK N FEFL+
Sbjct: 365 KEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLF 424
Query: 945 DLGTLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERV 1124
LGTL ++VER VC+ H+++ + F+VV D + +LDPL RVDDGYLER+
Sbjct: 425 SLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERI 484
Query: 1125 RIPFFNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FL 1283
R+PF+N + D ++K + + L + + ER+ S + +I W+ +++ F+
Sbjct: 485 RLPFWNLNDYDLKRKRVNAYNILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFI 544
Query: 1284 SFSKAVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGV 1463
S S F E + GK D K+ + CT L+ L F +
Sbjct: 545 SNSITEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----L 583
Query: 1464 EPEGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE---------- 1613
EGLD F+ + +H ++ LK AG + + DE E +T E
Sbjct: 584 CAEGLDGFNLE--------EHLERR-LKAAGHDVSD----DEEEELTSAEQAGPIKILAD 630
Query: 1614 --GGTKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVP 1769
G K+ E + + E G Q ++ + ++NY ++F C HG+ I P
Sbjct: 631 PLGFMKECLEEIPIETEPSLEERG-QFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTP 689
Query: 1770 ADGNCFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYC 1940
+DGNCFF+A F++ P R + + +L+E NG + L E IRPNGV+ E E IY
Sbjct: 690 SDGNCFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPNGVFMEAELIYL 748
Query: 1941 YARFRNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDL 2099
+ FR V +++H + + + G +EGH++ RGNHF+ + Y+ + S + D+
Sbjct: 749 FCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDI 808
Query: 2100 PIIYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEI 2279
P + E E+ F F F+C ++GR++AF+ T + DYGHNGMVYP N W+ S++EI
Sbjct: 809 PCGFSE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLEEI 865
Query: 2280 IKICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRD 2459
I+IC D+N AL+ FY+ S LG+HRDNE+VY DDPILTV G +F++EF+ V
Sbjct: 866 IQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGRFTIEFKDQVTS 925
Query: 2460 VEMHDASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNM 2639
M SF +MPKG QK+ARH V R+SITFRKHVR L+G+ I+ E + KN
Sbjct: 926 FLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNT 981
Query: 2640 CLIEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD 2819
CLI A ++ +K + L++ + WS + E +G ++ DC EAL + ++++ +
Sbjct: 982 CLINAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVN 1041
Query: 2820 EKISVMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK--- 2990
K V+ G + + R H++++ + R+ SH +KGNVNV++G +S
Sbjct: 1042 GKCVVLGKGALRISMALRNNHFSVINAAQLMERTFVSHLLEKGNVNVLEGFDAMLSGDVG 1101
Query: 2991 VEHYNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLY 3170
N IQF A E L SFL TTGI LG+ LDNG K+F H L K +
Sbjct: 1102 AAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDV 1159
Query: 3171 HCLTGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETF 3350
+ GFAGSGKSR +Q WL RKKGNF VV PR L DW FKL EP + KV TFE F
Sbjct: 1160 TMVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKF 1219
Query: 3351 IKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHIL 3530
IK +KSKLDLI++DELTLFPNGYLD L +EL + +++L+FDPLQARYHN+ D IL
Sbjct: 1220 IKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESIL 1279
Query: 3531 DFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRES 3710
FEHDVD L G + ++Y+Y + R+++ F+ F + + ++W+ + SI
Sbjct: 1280 TFEHDVDRLIGGQNIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSI 1339
Query: 3711 FGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFV 3887
D+++P DVLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW V
Sbjct: 1340 CSDRQEPCDVLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMV 1399
Query: 3888 ALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEF 4067
ALTRA+ R S C + LGG+++F V K L L+ EKI +L M + NL+ + E
Sbjct: 1400 ALTRARTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKEN 1459
Query: 4068 GCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQC 4247
GC DE+DREERL GDPFLKPFI+LGQR+ + E E + EP CQTHL+I+EPNF C
Sbjct: 1460 GCR-DEVDREERLEGDPFLKPFIFLGQRVEKDEDEVEEVKIREPTCQTHLYITEPNFGLC 1518
Query: 4248 YNFDLIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDD 4418
YNFD IR KE+REYREDMLVT+QFCDSY+ I G R T GP+RFKAIYPKHS DD
Sbjct: 1519 YNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDD 1575
Query: 4419 MTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFE 4598
MTFWMAV+KRLVFREE EN RL AHL+GGLLY NFK+ ++F DQ LLE+ N FE
Sbjct: 1576 MTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFE 1635
Query: 4599 IKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLIL 4778
KKL+KS TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLIL
Sbjct: 1636 KKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLIL 1695
Query: 4779 VQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDE 4958
VQFAPWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDE
Sbjct: 1696 VQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDE 1755
Query: 4959 YILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFT 5138
YILSFE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT
Sbjct: 1756 YILSFEIHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT 1815
Query: 5139 MCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQY 5318
MCRYEWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT Y
Sbjct: 1816 MCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPY 1875
Query: 5319 GIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATV 5498
GIVKEPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA V
Sbjct: 1876 GIVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVV 1935
Query: 5499 RFIVTHLDKLKTKVRLLFEEQSSEEDI 5579
RFIVTH+DKLKTKVR LF EQSS+EDI
Sbjct: 1936 RFIVTHIDKLKTKVRDLFLEQSSDEDI 1962
>gb|ACF94740.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 1827 bits (4733), Expect = 0.0
Identities = 981/1887 (51%), Positives = 1253/1887 (66%), Gaps = 42/1887 (2%)
Frame = +3
Query: 45 SINNSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFF 224
S++NS+ + +N ++ +DV RY E +F S FSR K L ++ FF
Sbjct: 129 SLDNSHTSF--INRLVASKDVSRYTEEA--DAFFQSKKGSPELFSRNFIKSLENKEAVFF 184
Query: 225 HDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFP 404
HDE+HHW+K +F FL + +R +F+VVYPPEIL + NSQNPK+Y FK+ + RLFFFP
Sbjct: 185 HDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFP 244
Query: 405 DGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFN 584
DGV +E YEQ N+ WLF +L GD WT+ RH S YAHHLFEI G L T+S FF+
Sbjct: 245 DGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFS 304
Query: 585 DFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI 764
D++ +DM IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI
Sbjct: 305 DYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI 364
Query: 765 KEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLY 944
KEFLFFEQ CKRLIER TS+G+FGH+ E L ++ LP + R WK N FEFL+
Sbjct: 365 KEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLF 424
Query: 945 DLGTLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERV 1124
LGTL ++VER VC+ H+++ + F+VV D + +LDPL R DDGYLER+
Sbjct: 425 SLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEGRADDGYLERI 484
Query: 1125 RIPFFN---YSGDPRKKEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FL 1283
R+PF+N Y R+ ++ L + + ER S + +I WH +++ F+
Sbjct: 485 RLPFWNLNDYDLKRRRVNVYNILSYRFEEERRIESAQKGPNKMLQIEWHGIKEFKVDPFI 544
Query: 1284 SFSKAVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGV 1463
S S F E + GK D K+ + CT L+ L F +
Sbjct: 545 SNSITEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----L 583
Query: 1464 EPEGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNE---------- 1613
EGLD F+ + +H ++ LK AG + + DE E +T E
Sbjct: 584 CAEGLDGFNLE--------EHLERR-LKAAGHDISD----DEEEELTSAEQAGPIKILAD 630
Query: 1614 --GGTKDG------EHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVP 1769
G K+ E + + E G Q ++ + ++NY ++F C HG+ I P
Sbjct: 631 PLGFMKECLEEIPIETEPSLEERG-QFSTDYHSERFEINYNDIFNPHNCMNTHGDEIPTP 689
Query: 1770 ADGNCFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYC 1940
+DGNCFF+A F++ P R + + +L+E NG + L E IRP+GV+ E E IY
Sbjct: 690 SDGNCFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGVFMEAELIYL 748
Query: 1941 YARFRNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDL 2099
+ FR V +++H + + + G +EGH++ RGNHF+ + Y+ + S + D+
Sbjct: 749 FCVFRGVTLIIHDRTHEKENVYAVHRGFEEGHMVHRGNHFVGIETYNISTLTSDPLLGDI 808
Query: 2100 PIIYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEI 2279
P + E E+ F+F F+C ++GR++AF+ T + DYGHNGMVYP N W+ S+DEI
Sbjct: 809 PCGFSE--EITKFRFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEI 865
Query: 2280 IKICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRD 2459
I+IC D+N AL+ FY+ S LG+HRDNE+VY DDPILTV G F++EF+G V
Sbjct: 866 IQICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKGQVTS 925
Query: 2460 VEMHDASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNM 2639
M SF +MPKG QK+ARH V R+SITFRKHVR L+G+ I+ E + KN
Sbjct: 926 FLMTAGSFFLMPKGFQKKARHSVSNEMSRVSITFRKHVRRLNGSPIAIREENY----KNT 981
Query: 2640 CLIEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD 2819
LI+A ++ +K + L++ + WS + E +G ++ DC EAL + ++++ +
Sbjct: 982 RLIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVN 1041
Query: 2820 EKISVMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK--- 2990
K V+ G + + + H++++ + R+ SH +KG++NV++G E +S
Sbjct: 1042 GKCVVLGKGAFRISMALKNNHFSVINAAQLMERTFVSHLLEKGDINVLEGFDEILSGDVG 1101
Query: 2991 VEHYNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLY 3170
N IQF A E L SFL TTGI LG+ LDNG K+F H L K +
Sbjct: 1102 AAGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDV 1159
Query: 3171 HCLTGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETF 3350
+ GFAGSGKSR +Q WL RKKGNF VV PR L DW FKL EP + KV TFE F
Sbjct: 1160 TVVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKF 1219
Query: 3351 IKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHIL 3530
IK +KSKLDLI++DELTLFPNGYLD L +EL + +++L+FDPLQARYHN+ D IL
Sbjct: 1220 IKTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARYHNKMDESIL 1279
Query: 3531 DFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRES 3710
FEHDVD L G + ++Y+Y + R+++ F+ F + + ++W+ + SI
Sbjct: 1280 TFEHDVDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSI 1339
Query: 3711 FGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFV 3887
D+++P DVLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW V
Sbjct: 1340 CSDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMV 1399
Query: 3888 ALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEF 4067
ALTR++ R S C + LGG+++F V K L L+ EKI +L M + NL+ + E
Sbjct: 1400 ALTRSRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKEN 1459
Query: 4068 GCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQC 4247
GC DE+DREERL GDPFLKPFI+LGQRI + E E + EP CQTHL+I+EPNF C
Sbjct: 1460 GCR-DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLC 1518
Query: 4248 YNFDLIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDD 4418
YNFD IR KE+REYREDMLVT+QFCDSY+ I G R T GP+RFKAIYPKHS DD
Sbjct: 1519 YNFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDD 1575
Query: 4419 MTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFE 4598
MTFWMAV+KRLVFREE EN RL AHL+GGLLY NFK+ ++F DQ LLE+ N FE
Sbjct: 1576 MTFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFE 1635
Query: 4599 IKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLIL 4778
KKL+KS TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLIL
Sbjct: 1636 KKKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLIL 1695
Query: 4779 VQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDE 4958
VQFAPWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDE
Sbjct: 1696 VQFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDE 1755
Query: 4959 YILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFT 5138
YILSFE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT
Sbjct: 1756 YILSFEVHLMKDAHFPQKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFT 1815
Query: 5139 MCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQY 5318
MCRYEWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT Y
Sbjct: 1816 MCRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPY 1875
Query: 5319 GIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATV 5498
GIVKEPEL YNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA V
Sbjct: 1876 GIVKEPELAYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVV 1935
Query: 5499 RFIVTHLDKLKTKVRLLFEEQSSEEDI 5579
RFIVTH+DKLKTKVR LF EQSS+EDI
Sbjct: 1936 RFIVTHIDKLKTKVRDLFLEQSSDEDI 1962
>gb|ACF94738.1| putative replicase polyprotein [Citrus leaf blotch virus]
Length = 1962
Score = 1827 bits (4732), Expect = 0.0
Identities = 980/1886 (51%), Positives = 1252/1886 (66%), Gaps = 41/1886 (2%)
Frame = +3
Query: 45 SINNSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFF 224
S+NNS+ + +N ++ +DV RY E +F S FSR K L ++ FF
Sbjct: 129 SLNNSHTSF--INRLVASKDVSRYTEEA--DAFFQSKKGGPELFSRNFIKSLENKEAVFF 184
Query: 225 HDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFP 404
HDE+HHW+K +F FL + +R +F+VVYPPEIL + NSQNPK+Y FK+ + RLFFFP
Sbjct: 185 HDEVHHWTKAQMFSFLKSTKVKRFIFTVVYPPEILKKFANSQNPKVYDFKVDKGRLFFFP 244
Query: 405 DGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFN 584
DGV +E YEQ N+ WLF +L GD WT+ RH S YAHHLFEI G L T+S FF+
Sbjct: 245 DGVKTEAYEQKLNMEWLFSASHLRSGDCVWTVTRHKSIYAHHLFEISIGELVTDSKLFFS 304
Query: 585 DFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI 764
D++ +DM IF +RF+ Y++FP++ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI
Sbjct: 305 DYNSIDMSKIFLDRFRSYEVFPISIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEI 364
Query: 765 KEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLY 944
KEFLFFEQ CKRLIER TS+G+FGH+ E L ++ LP + R WK N FEFL+
Sbjct: 365 KEFLFFEQFCKRLIERQTSWGLFGHSFFEKLTDMALSSLPNSIARIFPQWKKKNTFEFLF 424
Query: 945 DLGTLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERV 1124
LGTL ++VER VC+ H+++ + F+VV D + +LDPL RVDDGYLER+
Sbjct: 425 SLGTLVVDVERKVCFEHVLEEWGFEVVITDENAYLDPLSIFAINENFNEDRVDDGYLERI 484
Query: 1125 RIPFFNYSG-DPRKKEI--FFFLHKQLQSEREQVSTCEPYKAPPRICWHS-NDYR---FL 1283
R+PF+N + D ++K + + L + + ER+ S + +I W+ +++ F+
Sbjct: 485 RLPFWNLNDYDLKRKRVNAYDILSYRFEEERKIESAQKGPNKMLQIEWYGIKEFKVDPFI 544
Query: 1284 SFSKAVFPCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGV 1463
S S F E + GK D K+ + CT L+ L F +
Sbjct: 545 SNSITEFTLLEALL-GKRIDP-----KKYSYSKQACT-----------LSNYLTF----L 583
Query: 1464 EPEGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVT------------- 1604
EGLD F+ + +H ++ LK AG + + DE E +T
Sbjct: 584 CAEGLDGFNLE--------EHLERR-LKAAGHDTSD----DEEEELTSVEQTGPIKILAD 630
Query: 1605 ----LNEGGTKDGEHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPA 1772
+NE + E Q ++ + ++NY ++F C HG+ I P+
Sbjct: 631 PLSFMNECLEEIPIETEPSLEERGQFSTDYHSEKFEINYNDIFNPHNCMNTHGDEIPTPS 690
Query: 1773 DGNCFFNALQHIFDIPIDPHQDREELASFLVE-NG--FTRLGEHIRPNGVWAEVETIYCY 1943
DGNCFF+A F++ P R + + +L+E NG + L E IRP+G++ E E IY +
Sbjct: 691 DGNCFFSAFTETFEVE-RPDTLRSDFSDWLMEFNGGSYASLAEMIRPDGIFMEAELIYLF 749
Query: 1944 ARFRNVKIVVH----QDDKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFSS--VEDLP 2102
FR V +++H + + + G +EGH++ RGNHF+ + Y+ + S + D+P
Sbjct: 750 CVFRGVTLIIHDRTHKKENVYAVHRGFEEGHMVHRGNHFVGIETYNVSTLTSDPLLGDIP 809
Query: 2103 IIYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEII 2282
+ E E+ F F F+C ++GR++AF+ T + DYGHNGMVYP N W+ S+DEII
Sbjct: 810 CGFSE--EITKFHFRPDHFNCAQFRGRKAAFI-TKVDADYGHNGMVYPHNSWVPSLDEII 866
Query: 2283 KICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDV 2462
+IC D+N AL+ FY+ S LG+HRDNE+VY DDPILTV G F++EF+ V
Sbjct: 867 QICGQGDDFNCALINFYEANSSLGFHRDNERVYNDDPILTVCTFGEGTFTIEFKDQVTSF 926
Query: 2463 EMHDASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMC 2642
M SF +MPKG QK+ARH V R+SITFRKHVR L+G+ I+ E + KN C
Sbjct: 927 LMTAGSFFLMPKGFQKKARHSVSNGMPRVSITFRKHVRRLNGSPIAIREENY----KNTC 982
Query: 2643 LIEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDE 2822
LI+A ++ +K + L++ + WS + E +G ++ DC EAL + ++++
Sbjct: 983 LIDAFSKAMKRSKQAIIAKLKTVNSPFWSRYLSEGNGGSIEDCQSACEALDVTVDLNVSG 1042
Query: 2823 KISVMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISK---V 2993
K V+ G + + + H++++ + R+ SH +KGNVNV++G E +S
Sbjct: 1043 KYVVLGKGAFRISMALKDNHFSVINNAQLMERTFVSHLLEKGNVNVLEGFDEMLSGDVGA 1102
Query: 2994 EHYNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYH 3173
N IQF A E L SFL TTGI LG+ LDNG K+F H L K +
Sbjct: 1103 AGVNKIQFAANFEFARILANSFLNMTTGICLGKALDNGEKYF--LHILKDRVKQIGIDVT 1160
Query: 3174 CLTGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFI 3353
+ GFAGSGKSR +Q WL RKKGNF VV PR L DW FKL EP + KV TFE FI
Sbjct: 1161 MVCGFAGSGKSRKLQSWLHSRKKGNFCVVSPRTNLAADWAFKLELEPNEQRKVSTFEKFI 1220
Query: 3354 KKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILD 3533
K +KSKLDLI++DELTLFPNGYLD L +EL + +++L+FDPLQAR+HN+ D IL
Sbjct: 1221 KTDKSKLDLIVIDELTLFPNGYLDLLVYELADVNRHCQIILLFDPLQARHHNKMDESILT 1280
Query: 3534 FEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESF 3713
FEHDVD L G + ++Y+Y + R+++ F+ F + + ++W+ + SI
Sbjct: 1281 FEHDVDRLVGGQSIEYIYSTHRMSRYFNRFFDVPCFNQADRTEEQRLWIFDDVYSIPSIC 1340
Query: 3714 GDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVA 3890
D+++P DVLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW VA
Sbjct: 1341 SDRQEPCDVLLVESDLEKKAFSPIMNVMTFGESQGLTFNHVCILLSESSAASNEFRWMVA 1400
Query: 3891 LTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFG 4070
LTR++ R S C + LGG+++F V K L L+ EKI +L M + NL+ + E G
Sbjct: 1401 LTRSRTRFSLCSTFLGGIEEFKVKRKESLITSILQGEKITFNRLNLMLKCNLIRREKENG 1460
Query: 4071 CGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCY 4250
C DE+DREERL GDPFLKPFI+LGQRI + E E + EP CQTHL+I+EPNF CY
Sbjct: 1461 CR-DEVDREERLEGDPFLKPFIFLGQRIEKDEDEVEEVKIREPTCQTHLYITEPNFGLCY 1519
Query: 4251 NFDLIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDM 4421
NFD IR KE+REYREDMLVT+QFCDSY+ I G R T GP+RFKAIYPKHS DDM
Sbjct: 1520 NFDFIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDM 1576
Query: 4422 TFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEI 4601
TFWMAV+KRLVFREE EN RL AHL+GGLLY NFK+ ++F DQ LLE+ N FE
Sbjct: 1577 TFWMAVRKRLVFREEEENYQRLSRAHLVGGLLYTNFKKKMGLEFTFDQGLLEESINAFEK 1636
Query: 4602 KKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILV 4781
KKL+KS TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILV
Sbjct: 1637 KKLEKSCGTIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILV 1696
Query: 4782 QFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEY 4961
QFAPWCRYLE+QIR QLPEEIYIHSN+NFDDLN WVKK F RDICVESDYEAFDA QDEY
Sbjct: 1697 QFAPWCRYLETQIRNQLPEEIYIHSNKNFDDLNAWVKKFFQRDICVESDYEAFDASQDEY 1756
Query: 4962 ILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTM 5141
ILSFE+HLMKDA FP ++IDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFTM
Sbjct: 1757 ILSFEIHLMKDAHFPRKIIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTM 1816
Query: 5142 CRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYG 5321
CRYEWR GQPIAFAGDDMCALNNL + HDF+++FE ISLKAKVERTE PMFCGWRLT YG
Sbjct: 1817 CRYEWRRGQPIAFAGDDMCALNNLAVCHDFDDLFELISLKAKVERTETPMFCGWRLTPYG 1876
Query: 5322 IVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVR 5501
IVKEPELVYNRFQ+AIEEGKV+ECLENYAIEVSYAYSLSERLYEVLKSERQ+QYHQA VR
Sbjct: 1877 IVKEPELVYNRFQVAIEEGKVLECLENYAIEVSYAYSLSERLYEVLKSERQVQYHQAVVR 1936
Query: 5502 FIVTHLDKLKTKVRLLFEEQSSEEDI 5579
FIVTH+DKLKTKVR LF EQSS+EDI
Sbjct: 1937 FIVTHIDKLKTKVRDLFLEQSSDEDI 1962
>gb|AFA43534.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1800 bits (4661), Expect = 0.0
Identities = 962/1878 (51%), Positives = 1230/1878 (65%), Gaps = 36/1878 (1%)
Frame = +3
Query: 54 NSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 233
+++ + +N ++ +D+ RY E F+ ++ FS + + ++ FFHDE
Sbjct: 131 SASDHTSFINRLVASKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDE 189
Query: 234 IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 413
+HHW+K +F FL + RR +F++VYPPE+L + NSQNPK+Y FK+ + RLFFFPDGV
Sbjct: 190 VHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGV 249
Query: 414 TSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFD 593
+E YEQ N+ WLF + GD+TWT+ RH S Y+HHLFE+ G L ++S FF+D+
Sbjct: 250 KTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYG 309
Query: 594 VVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 773
+DM IF +RF+ Y++FP+ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF
Sbjct: 310 SIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 369
Query: 774 LFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLG 953
LFFEQ CKRLIER TS+G+FG++ + L ++ +P + R WK N FEFL+ LG
Sbjct: 370 LFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLG 429
Query: 954 TLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIP 1133
TL +E+ER VC+ HI++ + F+VV D + +LDPL RVDDGYL+RV++P
Sbjct: 430 TLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLP 489
Query: 1134 FFNYSG-DPRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFS 1292
F+N DP++ + +K + + + P+K +I W+ D F++
Sbjct: 490 FWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANG 548
Query: 1293 KAVFPCEEGIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEG 1460
+ F E + + H + Y+ + + V +C + + L L + G
Sbjct: 549 ISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAG 606
Query: 1461 VEP-----EGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPP----EGRQNDESEAVTLNE 1613
+P EGL + + + D + + + + P EG ++ +E
Sbjct: 607 RDPIESESEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESE 666
Query: 1614 GGTKDGEHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFN 1793
G E E G + + K + D + ++F C HG I P DGNCFF+
Sbjct: 667 GEIGKEESFEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFS 723
Query: 1794 ALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVK 1964
A FD P D R A +L + +G IRPNGV+ E E IY + +R V
Sbjct: 724 AFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVT 782
Query: 1965 IVVHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERS 2123
+++H + F G +EGH++ RG+HFL + Y S ++ +LP Y E
Sbjct: 783 LIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE-- 840
Query: 2124 ELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG 2303
EL NF F F+C ++GR+ AFL T + DYGHNGMVYP N W+ S+DEII+ICD
Sbjct: 841 ELRNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGD 899
Query: 2304 DYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASF 2483
D+N AL+ FY S LG+HRDNE+VY DDPILTV G FS+EF+ M SF
Sbjct: 900 DFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSF 959
Query: 2484 LIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAE 2663
+MP+G Q++ARH V R+SITFRKH+R L G+ I+ I D+ +N+CLI A+++
Sbjct: 960 FLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSK 1015
Query: 2664 GLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSF 2843
L + L++ + WS F + +G ++ DC EAL + +++ D K V+
Sbjct: 1016 ALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGE 1075
Query: 2844 GHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQF 3017
G V + + H++++ E ++ R+ SH KK N+ V+ GL E + N +QF
Sbjct: 1076 GAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQF 1135
Query: 3018 NAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGS 3197
A+ E L SFL TTGI L LDNG K+F H K + + GFAGS
Sbjct: 1136 IADFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGS 1193
Query: 3198 GKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLD 3377
GKSR +Q WL RK+GNF VV PR L DW FKL EP + KV TFE+FIK +KSKLD
Sbjct: 1194 GKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLD 1253
Query: 3378 LIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCL 3557
+I+LDELTLFPNGYLD L +EL + S ++L+FDPLQARYHN+ D +L+FEHDVD L
Sbjct: 1254 MIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRL 1313
Query: 3558 TGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-D 3734
G ++L+Y+Y S R++K F+ F + T + ++W++ + SI D+ +P D
Sbjct: 1314 IGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCD 1373
Query: 3735 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 3914
VLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+
Sbjct: 1374 VLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRL 1433
Query: 3915 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4094
SFC + LGGMD+F + L L ++I + M + NL+ ++ + GC DE+DR
Sbjct: 1434 SFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS-DEVDR 1492
Query: 4095 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4274
EERL GDPFLKPFI+LG RI + E E EP CQTHL+I+EPNF CYNFD IR K
Sbjct: 1493 EERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREK 1552
Query: 4275 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4445
E+REYREDMLVT+QFCDSY+ I G R T GP+RFKAIYPKHS DDMTFWMAVKK
Sbjct: 1553 EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKK 1609
Query: 4446 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4625
RLVFREE EN RL AHL+GGLLY NFK ++F DQ L E+ N FE KKL+KS
Sbjct: 1610 RLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCG 1669
Query: 4626 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 4805
TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 1670 TIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 1729
Query: 4806 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 4985
LE+QIR QLPEEIYIHSN+NFDDLNRWVK F +DICVESDYEAFDACQDEYILSFE+HL
Sbjct: 1730 LEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDACQDEYILSFEIHL 1789
Query: 4986 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5165
MKDA FP VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR G
Sbjct: 1790 MKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRG 1849
Query: 5166 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5345
QPIAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 1850 QPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELV 1909
Query: 5346 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5525
YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 1910 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDK 1969
Query: 5526 LKTKVRLLFEEQSSEEDI 5579
LKT+V+ LF EQSS+EDI
Sbjct: 1970 LKTRVKDLFLEQSSDEDI 1987
>gb|AFA43530.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1798 bits (4657), Expect = 0.0
Identities = 962/1878 (51%), Positives = 1230/1878 (65%), Gaps = 36/1878 (1%)
Frame = +3
Query: 54 NSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 233
+++ + +N ++ +D+ RY E F+ ++ FS + + ++ FFHDE
Sbjct: 131 SASDHTSFVNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDE 189
Query: 234 IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 413
+HHW+K +F FL + RR +F++VYPPE+L + NSQNPK+Y FK+ + RLFFFPDGV
Sbjct: 190 VHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGV 249
Query: 414 TSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFD 593
+E YEQ N+ WLF + GD+TWT+ RH S Y+HHLFE+ G L ++S FF+D+
Sbjct: 250 KTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYG 309
Query: 594 VVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 773
+DM IF +RF+ Y++FP+ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF
Sbjct: 310 SIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 369
Query: 774 LFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLG 953
LFFEQ CKRLIER TS+G+FG++ + L ++ +P + R WK N FEFL+ LG
Sbjct: 370 LFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLG 429
Query: 954 TLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIP 1133
TL +E+ER VC+ HI++ + F+VV D + +LDPL RVDDGYL+RV++P
Sbjct: 430 TLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLP 489
Query: 1134 FFNYSG-DPRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFS 1292
F+N DP++ + +K + + + P+K +I W+ D F++
Sbjct: 490 FWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANG 548
Query: 1293 KAVFPCEEGIENGK-HFDAYASTLKRLVKE---GEMCTNAYMNQVFDEFLNPELYFKEEG 1460
+ F E + + H + Y+ + + V +C + + L L + G
Sbjct: 549 ISEFTILEALIGKRIHKERYSYSKQADVLAKCLSFVCEIGGGGEGLEFVLERRL--QSAG 606
Query: 1461 VEP-----EGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPP----EGRQNDESEAVTLNE 1613
+P EGL + + + D + + + + P EG ++ +E
Sbjct: 607 RDPIESESEGLGKKTAESSGEADAANTLLETQISGLVAFIPTFSDEGESQHRADLEVESE 666
Query: 1614 GGTKDGEHKENGEMHGYQNGSEKKDKSDDLNYRNMFVEVKCHAAHGEPINVPADGNCFFN 1793
G E E G + + K + D + ++F C HG I P DGNCFF+
Sbjct: 667 GEIGKEESFEEGTLSCAEGHEAIKFEID---FSDIFRPHNCMNTHGYEIPTPMDGNCFFS 723
Query: 1794 ALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYARFRNVK 1964
A FD P D R A +L + +G IRPNGV+ E E IY + +R V
Sbjct: 724 AFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFCIYREVT 782
Query: 1965 IVVHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPIIYGERS 2123
+++H + F G +EGH++ RG+HFL + Y S ++ +LP Y E
Sbjct: 783 LIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPCGYSE-- 840
Query: 2124 ELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG 2303
EL NF F F+C ++GR+ AFL T + DYGHNGMVYP N W+ S+DEII+ICD
Sbjct: 841 ELRNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIRICDHGD 899
Query: 2304 DYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASF 2483
D+N AL+ FY S LG+HRDNE+VY DDPILTV G FS+EF+ M SF
Sbjct: 900 DFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFLMTAGSF 959
Query: 2484 LIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAE 2663
+MP+G Q++ARH V R+SITFRKH+R L G+ I+ I D+ +N+CLI A+++
Sbjct: 960 FLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCLIRALSK 1015
Query: 2664 GLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSF 2843
L + L++ + WS F + +G ++ DC EAL + +++ D K V+
Sbjct: 1016 ALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGKCLVLGE 1075
Query: 2844 GHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH--YNAIQF 3017
G V + + H++++ E ++ R+ SH KK N+ V+ GL E + N +QF
Sbjct: 1076 GAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTGVNCVQF 1135
Query: 3018 NAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGS 3197
A+ E L SFL TTGI L LDNG K+F H K + + GFAGS
Sbjct: 1136 IADFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAICGFAGS 1193
Query: 3198 GKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKKEKSKLD 3377
GKSR +Q WL RK+GNF VV PR L DW FKL EP + KV TFE+FIK +KSKLD
Sbjct: 1194 GKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKMDKSKLD 1253
Query: 3378 LIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFEHDVDCL 3557
+I+LDELTLFPNGYLD L +EL + S ++L+FDPLQARYHN+ D +L+FEHDVD L
Sbjct: 1254 MIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFEHDVDRL 1313
Query: 3558 TGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGDKEQP-D 3734
G ++L+Y+Y S R++K F+ F + T + ++W++ + SI D+ +P D
Sbjct: 1314 IGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCIDQGEPCD 1373
Query: 3735 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 3914
VLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R+
Sbjct: 1374 VLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRL 1433
Query: 3915 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4094
SFC + LGGMD+F + L L ++I +L M + NL+ ++ + GC DE+DR
Sbjct: 1434 SFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERLNMMVKCNLIKQEKKNGCS-DEVDR 1492
Query: 4095 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4274
EERL GDPFLKPFI+LGQRI + E E EP CQTHL+I+EPNF CYNFD IR K
Sbjct: 1493 EERLEGDPFLKPFIFLGQRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNFDFIREK 1552
Query: 4275 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4445
E+REYREDMLVT+QFCDSY+ I G R T GP+RFKAIYPKHS DDMTFWMAVKK
Sbjct: 1553 EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTFWMAVKK 1609
Query: 4446 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4625
RLVFREE EN RL AHL+GGLLY NFK ++F DQ L E+ N FE KKL+KS
Sbjct: 1610 RLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKKLEKSCG 1669
Query: 4626 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 4805
TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 1670 TIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 1729
Query: 4806 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 4985
LE+QIR QLPEEIYIHSN+NFDDL RWVK F +DICVESDYEAFD CQDEYILSFE+HL
Sbjct: 1730 LEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYILSFEIHL 1789
Query: 4986 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5165
MKDA FP VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CRYEWR G
Sbjct: 1790 MKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCRYEWRRG 1849
Query: 5166 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5345
QPIAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 1850 QPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIVKEPELV 1909
Query: 5346 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5525
YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 1910 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDK 1969
Query: 5526 LKTKVRLLFEEQSSEEDI 5579
LKT+V+ LF EQSS+EDI
Sbjct: 1970 LKTRVKDLFLEQSSDEDI 1987
>gb|AFA43527.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1798 bits (4656), Expect = 0.0
Identities = 959/1884 (50%), Positives = 1234/1884 (65%), Gaps = 42/1884 (2%)
Frame = +3
Query: 54 NSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 233
+++ + +N ++ +D+ RY E F+ ++ FS + + ++ FFHDE
Sbjct: 131 SASDHTSFVNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDE 189
Query: 234 IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 413
+HHW+K +F FL + RR +F++VYPPE+L + NSQNPK+Y FK+ + RLFFFPDGV
Sbjct: 190 VHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGV 249
Query: 414 TSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFD 593
+E YEQ N+ WLF + GD+TWT+ RH S Y+HHLFE+ G L ++S FF+D+
Sbjct: 250 KTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYG 309
Query: 594 VVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 773
+DM IF +RF+ Y++FP+ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF
Sbjct: 310 SIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 369
Query: 774 LFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLG 953
LFFEQ CKRLIER TS+G+FG++ + L ++ +P + R WK N FEFL+ LG
Sbjct: 370 LFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLG 429
Query: 954 TLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIP 1133
TL +E+ER VC+ HI++ + F+VV D + +LDPL RVDDGYL+RV++P
Sbjct: 430 TLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLP 489
Query: 1134 FFNYSG-DPRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFS 1292
F+N DP++ + +K + + + P+K +I W+ D F++
Sbjct: 490 FWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANG 548
Query: 1293 KAVFPCEEGIENGK-HFDAYASTLKRLVKEGEMCTN--AYMNQVFDEFLNPELYFKEEGV 1463
+ F E + + H + Y+ + K+ ++ +++ ++ E + E +
Sbjct: 549 ISEFTILEALIGKRIHKERYSYS-----KQADVLAKCLSFVCEIGGGGEGLE-FVLERRL 602
Query: 1464 EPEGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNEGGTKDGEHKE 1643
+ G D ++ L G + +G DA + E S V + +GE +
Sbjct: 603 QSAGRDPIESELEGL--GKKTAESSGEADAANTLLE---TQISGLVAFIPTFSDEGESQH 657
Query: 1644 NGEMHGYQNGSEKKDKSDD----------------LNYRNMFVEVKCHAAHGEPINVPAD 1775
++ G K++S + +++ ++F C HG I P D
Sbjct: 658 RADLEVESEGEIGKEESFEEGTLSCAEGHEAIKFEIDFSDIFRPHNCMNTHGYEIPTPMD 717
Query: 1776 GNCFFNALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYA 1946
GNCFF+A FD P D R A +L + +G IRPNGV+ E E IY +
Sbjct: 718 GNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 1947 RFRNVKIVVHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPI 2105
+R V +++H + F G +EGH++ RG+HFL + Y S ++ +LP
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 2106 IYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIK 2285
Y E EL NF F F+C ++GR+ AFL T + DYGHNGMVYP N W+ S+DEII+
Sbjct: 837 GYSE--ELRNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIR 893
Query: 2286 ICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVE 2465
ICD D+N AL+ FY S LG+HRDNE+VY DDPILTV G FS+EF+
Sbjct: 894 ICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFL 953
Query: 2466 MHDASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCL 2645
M SF +MP+G Q++ARH V R+SITFRKH+R L G+ I+ I D+ +N+CL
Sbjct: 954 MTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCL 1009
Query: 2646 IEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEK 2825
I A+++ L + L++ + WS F + +G ++ DC EAL + +++ D K
Sbjct: 1010 IRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGK 1069
Query: 2826 ISVMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH-- 2999
V+ G V + + H++++ E ++ R+ SH KK N+ V+ GL E +
Sbjct: 1070 CLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTG 1129
Query: 3000 YNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCL 3179
N +QF A+ E L SFL TTGI L LDNG K+F H K + +
Sbjct: 1130 VNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAI 1187
Query: 3180 TGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKK 3359
GFAGSGKSR +Q WL RK+GNF VV PR L DW FKL EP + KV TFE+FIK
Sbjct: 1188 CGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKM 1247
Query: 3360 EKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFE 3539
+KSKLD+I+LDELTLFPNGYLD L +EL + S ++L+FDPLQARYHN+ D +L+FE
Sbjct: 1248 DKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFE 1307
Query: 3540 HDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGD 3719
HDVD L G ++L+Y+Y S R++K F+ F + T + ++W++ + SI D
Sbjct: 1308 HDVDRLIGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCID 1367
Query: 3720 KEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALT 3896
+ +P DVLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW VALT
Sbjct: 1368 QGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALT 1427
Query: 3897 RAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCG 4076
RAK R+SFC + LGGMD+F + L L ++I + M + NL+ ++ + GC
Sbjct: 1428 RAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS 1487
Query: 4077 IDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNF 4256
DE+DREERL GDPFLKPFI+LG RI + E E EP CQTHL+I+EPNF CYNF
Sbjct: 1488 -DEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNF 1546
Query: 4257 DLIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTF 4427
D IR KE+REYREDMLVT+QFCDSY+ I G R T GP+RFKAIYPKHS DDMTF
Sbjct: 1547 DFIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTF 1603
Query: 4428 WMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKK 4607
WMAVKKRLVFREE EN RL AHL+GGLLY NFK ++F DQ L E+ N FE KK
Sbjct: 1604 WMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKK 1663
Query: 4608 LQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQF 4787
L+KS TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQF
Sbjct: 1664 LEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQF 1723
Query: 4788 APWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYIL 4967
APWCRYLE+QIR QLPEEIYIHSN+NFDDLNRWVK F +DICVESDYEAFD CQDEYIL
Sbjct: 1724 APWCRYLEAQIRNQLPEEIYIHSNKNFDDLNRWVKNFFQKDICVESDYEAFDVCQDEYIL 1783
Query: 4968 SFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCR 5147
SFE+HLMKDA FP VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CR
Sbjct: 1784 SFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCR 1843
Query: 5148 YEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIV 5327
YEWR GQPIAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIV
Sbjct: 1844 YEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIV 1903
Query: 5328 KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFI 5507
KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFI
Sbjct: 1904 KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFI 1963
Query: 5508 VTHLDKLKTKVRLLFEEQSSEEDI 5579
VTH+DKLKT+V+ LF EQSS+EDI
Sbjct: 1964 VTHIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AFA43536.1| replicase polyprotein [Citrus leaf blotch virus]
Length = 1987
Score = 1795 bits (4648), Expect = 0.0
Identities = 958/1884 (50%), Positives = 1233/1884 (65%), Gaps = 42/1884 (2%)
Frame = +3
Query: 54 NSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 233
+++ + +N ++ +D+ RY E F+ ++ FS + + ++ FFHDE
Sbjct: 131 SASDHTSFVNRLVAPKDIRRYTEEA-DAFFSSKKKNDPELFSNNFIRCISNKEAVFFHDE 189
Query: 234 IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 413
+HHW+K +F FL + RR +F++VYPPE+L + NSQNPK+Y FK+ + RLFFFPDGV
Sbjct: 190 VHHWTKAQMFSFLKRTKVRRFIFTIVYPPELLKKFANSQNPKVYDFKVDKGRLFFFPDGV 249
Query: 414 TSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFD 593
+E YEQ N+ WLF + GD+TWT+ RH S Y+HHLFE+ G L ++S FF+D+
Sbjct: 250 KTEAYEQKLNMEWLFSASHFKSGDQTWTVTRHKSIYSHHLFEVSMGELISDSKIFFSDYG 309
Query: 594 VVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 773
+DM IF +RF+ Y++FP+ +H+YKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF
Sbjct: 310 SIDMSKIFLDRFRSYEVFPIAIEHLYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEF 369
Query: 774 LFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLG 953
LFFEQ CKRLIER TS+G+FG++ + L ++ +P + R WK N FEFL+ LG
Sbjct: 370 LFFEQFCKRLIERQTSWGLFGYSFFDKLTDLALSKMPNVVARMFPQWKKKNTFEFLFSLG 429
Query: 954 TLNIEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIP 1133
TL +E+ER VC+ HI++ + F+VV D + +LDPL RVDDGYL+RV++P
Sbjct: 430 TLVVEIERRVCFEHILEEWGFEVVITDENAYLDPLSVFALNENFNEERVDDGYLDRVKLP 489
Query: 1134 FFNYSG-DPRK---KEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSN---DYRFLSFS 1292
F+N DP++ + +K + + + P+K +I W+ D F++
Sbjct: 490 FWNLKDYDPKRGRANKYDLLCYKFEEERKNDLRERGPHKML-QIEWYGIREFDDPFIANG 548
Query: 1293 KAVFPCEEGIENGK-HFDAYASTLKRLVKEGEMCTN--AYMNQVFDEFLNPELYFKEEGV 1463
+ F E + + H + Y+ + K+ ++ +++ ++ E + E +
Sbjct: 549 ISEFTILEALIGKRIHKERYSYS-----KQADVLAKCLSFVCEIGGGGEGLE-FVLERRL 602
Query: 1464 EPEGLDAFSFDVNELVDGVDHDKKNGLKDAGSNPPEGRQNDESEAVTLNEGGTKDGEHKE 1643
+ G D ++ L G + +G DA + E S V + +GE +
Sbjct: 603 QSAGRDPIESELEGL--GKKTAESSGEADAANTLLE---TQISGLVAFIPTFSDEGESQH 657
Query: 1644 NGEMHGYQNGSEKKDKSDD----------------LNYRNMFVEVKCHAAHGEPINVPAD 1775
++ G K++S + +++ ++F C HG I P D
Sbjct: 658 RADLEVESEGEIGKEESFEEGTLSCAEGHEAIKFEIDFSDIFRPHNCMNTHGYEIPTPMD 717
Query: 1776 GNCFFNALQHIFDIPIDPHQDREELASFLVE---NGFTRLGEHIRPNGVWAEVETIYCYA 1946
GNCFF+A FD P D R A +L + +G IRPNGV+ E E IY +
Sbjct: 718 GNCFFSAFAATFDCP-DSKDLRSNFADWLDTFDGGSYADMGVKIRPNGVFMEAELIYLFC 776
Query: 1947 RFRNVKIVVHQD----DKCFEYGEG-DEGHLLLRGNHFLALPMYSSKSNFS--SVEDLPI 2105
+R V +++H + F G +EGH++ RG+HFL + Y S ++ +LP
Sbjct: 777 IYREVTLIMHDRTNDRESVFAIHLGFEEGHMVQRGDHFLGIETYRIDGFASDPNLSELPC 836
Query: 2106 IYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIK 2285
Y E EL NF F F+C ++GR+ AFL T + DYGHNGMVYP N W+ S+DEII+
Sbjct: 837 GYSE--ELRNFHFKPEHFNCAQFRGRKGAFL-TKVDADYGHNGMVYPHNAWVPSLDEIIR 893
Query: 2286 ICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVE 2465
ICD D+N AL+ FY S LG+HRDNE+VY DDPILTV G FS+EF+
Sbjct: 894 ICDHGDDFNCALINFYGPNSSLGFHRDNERVYNDDPILTVCTEGEGFFSIEFKEQTASFL 953
Query: 2466 MHDASFLIMPKGMQKQARHKVHAYTRRISITFRKHVRDLSGNSISTIEADSDWKKKNMCL 2645
M SF +MP+G Q++ARH V R+SITFRKH+R L G+ I+ I D+ +N+CL
Sbjct: 954 MTAGSFFLMPRGFQRKARHSVRNELPRVSITFRKHIRRLDGSPIA-IRQDN---YRNVCL 1009
Query: 2646 IEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEK 2825
I A+++ L + L++ + WS F + +G ++ DC EAL + +++ D K
Sbjct: 1010 IRALSKALNRGMQAIIAKLKTVNNPFWSRFLSDGNGGSVEDCLAACEALGITVDLFVDGK 1069
Query: 2826 ISVMSFGHTLVKIQFRKGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEH-- 2999
V+ G V + + H++++ E ++ R+ SH KK N+ V+ GL E +
Sbjct: 1070 CLVLGEGAVRVSLALKDNHFSVVEEHRSIQRTFVSHLAKKSNLRVMDGLDEMLQSEMSTG 1129
Query: 3000 YNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCL 3179
N +QF A+ E L SFL TTGI L LDNG K+F H K + +
Sbjct: 1130 VNCVQFIADFEHARVLANSFLNMTTGICLSRALDNGEKYF--LHMSEERPKQIGFDVTAI 1187
Query: 3180 TGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETFIKK 3359
GFAGSGKSR +Q WL RK+GNF VV PR L DW FKL EP + KV TFE+FIK
Sbjct: 1188 CGFAGSGKSRQLQSWLHARKRGNFCVVSPRNNLAADWSFKLELEPNEKRKVATFESFIKM 1247
Query: 3360 EKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYHNEADAHILDFE 3539
+KSKLD+I+LDELTLFPNGYLD L +EL + S ++L+FDPLQARYHN+ D +L+FE
Sbjct: 1248 DKSKLDMIVLDELTLFPNGYLDLLIYELDKFNSHCHLILLFDPLQARYHNKMDEAVLNFE 1307
Query: 3540 HDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWLVSNPDSIRESFGD 3719
HDVD L G ++L+Y+Y S R++K F+ F + T + ++W++ + SI D
Sbjct: 1308 HDVDRLIGGQDLRYIYSSHRMSKYFNRFFDVPCFNQAETTKEQRLWILDDVYSITSVCID 1367
Query: 3720 KEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALT 3896
+ +P DVLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW VALT
Sbjct: 1368 QGEPCDVLLVESDLEKKAFSPVINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALT 1427
Query: 3897 RAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCG 4076
RAK R+SFC + LGGMD+F + L L ++I + M + NL+ ++ + GC
Sbjct: 1428 RAKTRLSFCSTFLGGMDEFKIKRGESLVTSILEGKQITFERSNMMVKCNLIKQEKKNGCS 1487
Query: 4077 IDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNF 4256
DE+DREERL GDPFLKPFI+LG RI + E E EP CQTHL+I+EPNF CYNF
Sbjct: 1488 -DEVDREERLEGDPFLKPFIFLGHRIQKSHDEVGEIEVREPTCQTHLYITEPNFGLCYNF 1546
Query: 4257 DLIRLKEEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTF 4427
D IR KE+REYREDMLVT+QFCDSY+ I G R T GP+RFKAIYPKHS DDMTF
Sbjct: 1547 DFIREKEQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPLRFKAIYPKHSADDDMTF 1603
Query: 4428 WMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKK 4607
WMAVKKRLVFREE EN RL AHL+GGLLY NFK ++F DQ L E+ N FE KK
Sbjct: 1604 WMAVKKRLVFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLFEESVNAFEKKK 1663
Query: 4608 LQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQF 4787
L+KS TIKSHSIRSDVDWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQF
Sbjct: 1664 LEKSCGTIKSHSIRSDVDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQF 1723
Query: 4788 APWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYIL 4967
APWCRYLE+QIR QLPEEIYIHSN+NFDDL RWVK F +DICVESDYEAFD CQDEYIL
Sbjct: 1724 APWCRYLEAQIRNQLPEEIYIHSNKNFDDLYRWVKNFFQKDICVESDYEAFDVCQDEYIL 1783
Query: 4968 SFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCR 5147
SFE+HLMKDA FP VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLANIAFT+CR
Sbjct: 1784 SFEIHLMKDAHFPQRVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANIAFTLCR 1843
Query: 5148 YEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIV 5327
YEWR GQPIAFAGDDMCALNNLP+ HDF+++FE ISLKAKVERTE PMFCGWRLT YGIV
Sbjct: 1844 YEWRRGQPIAFAGDDMCALNNLPICHDFDDLFELISLKAKVERTESPMFCGWRLTPYGIV 1903
Query: 5328 KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFI 5507
KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFI
Sbjct: 1904 KEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFI 1963
Query: 5508 VTHLDKLKTKVRLLFEEQSSEEDI 5579
VTH+DKLKT+V+ LF EQSS+EDI
Sbjct: 1964 VTHIDKLKTRVKDLFLEQSSDEDI 1987
>gb|AKN08994.1| replicase [Caucasus prunus virus]
Length = 1986
Score = 1187 bits (3070), Expect = 0.0
Identities = 737/1902 (38%), Positives = 1029/1902 (54%), Gaps = 69/1902 (3%)
Frame = +3
Query: 66 NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 245
N++++N I +D GRY + LS+DH F + + + K F HDE+HHW
Sbjct: 120 NVDIVNRCICAKDFGRYDFEPGSVDQKINILSKDHLFPKNFIRSVR-KKKIFIHDEVHHW 178
Query: 246 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 425
S ++ +FL + L+ SVV+PPE+LGG QN +Y F++ D+LFFFPDG SE
Sbjct: 179 SHLNMIQFLEETATPLLLCSVVFPPELLGGIKTPQNSALYGFQVDGDKLFFFPDGSRSEM 238
Query: 426 YEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTESTFFFNDFDVVDM 605
YEQP+NL WLF+ Y+ T+T+ S YAHHLF+I G T+S FF DF+ +DM
Sbjct: 239 YEQPSNLNWLFEASYIHTSAGTYTVKMVGSFYAHHLFQISKGEKITDSVRFFADFNTIDM 298
Query: 606 HHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVEIKEFLFFE 785
I K RFK YD+ P+ H+ K+Y+YLLCLKKPD+ES +AKLRQ++ D+ + + FF
Sbjct: 299 SVIHKERFKYYDLIPIKKSHIEKIYTYLLCLKKPDVESAIAKLRQLMEDEQDCRVVEFFC 358
Query: 786 QLCKRLI-ERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNLFEFLYDLGTLN 962
K+LI + + +FG + L+ + LP + W N+F FL+ L T+
Sbjct: 359 TFAKKLITDTKGAINLFGDSFLQKAKDSFIMALPNSIASCFDRWHGLNIFHFLFTLDTIR 418
Query: 963 IEVERGVCYSHIMQNFPFDVVHLDSSVFLDPLPXXXXXXXXXXXRVDDGYLERVRIPF-- 1136
++VE V FD + + V LP V G V I
Sbjct: 419 VKVETKVVDRGYRTQM-FDDLEVKDDVMSTKLPEAIDTLFFGGQLVKGGDRRTVVIKSLD 477
Query: 1137 ----FNYSGDPRKKEIFFFLHKQLQSEREQVSTCEPYKAPPRICWHSNDYRFLSFSKAVF 1304
F+ S + K I F L+ L + + C ++ +C +ND
Sbjct: 478 GLIKFSRSKNLYKMHIIFLLNPSLIRGNIR-NFCSNGRS---LC--ANDQ---------- 521
Query: 1305 PCEEGIENGKHFDAYASTLKRLVKEGEMCTNAYMNQVFDEFLNPELYFKEEGVEPEGLDA 1484
E G H+ T K EM + ++ FL ++F+E ++
Sbjct: 522 -LESGPLKTSHYKFKLPTF--FSKWSEMPFSRSLSYHEIPFLKSFVHFRENNIKRFVDPI 578
Query: 1485 FSFDVNELVDGVDHDKKNGLKDAG------SNPPEGRQNDESEAVTLNEGGTKDGEHKEN 1646
F ++E+ + +D D N ++A ++ +G+Q++ + + G K G+
Sbjct: 579 FDMIIDEM-NQLDLDIMNDGEEAAVEILDVNSNLDGKQSEHHDEEFVTPTGLKGGDGLVT 637
Query: 1647 GEMHGYQNGSEKKDKSDDLNYRN---MFVEVKCHAAHG-EPI---------NVPADGNCF 1787
E + S+ F C G EPI +V DGNCF
Sbjct: 638 IESIEVDPSEFRTPASELCGLATEPVSFPGDSCSVLMGNEPIAVADEYNICDVEGDGNCF 697
Query: 1788 FNALQHIFDIPIDPHQ---DREELASFLVENGFTRLGEH---IRPNGVWAEVETIYCYAR 1949
AL + I D R L + + G I G + I
Sbjct: 698 MRAL--LTSIKGDDRTYPGSRSRLLNLSRQIGVNLTDSEEAQILREGEQFDEWMIMFTVN 755
Query: 1950 FRNVKIVVHQDDKCFEY-----------GEGDEGHLLLRGNHFLAL-------------- 2054
N+ + + Q D + E +L RGNHFL L
Sbjct: 756 VMNLSLKIFQGDVSIPRTLSPKLVNTHGNDAKEIAILHRGNHFLGLLKKCTSESGAHDFD 815
Query: 2055 ---PMYSSKSNFSSVEDLPIIYGERSELLNFKFVESDFSCFVWKGRRSAFLSTSPEIDYG 2225
P+ +S N E + + EL S F K R + F S S IDYG
Sbjct: 816 GNQPVEASSDNHFD-ETFETGFNDFEELRKVVGSISMFKKTPLKNRDAFFFSESKSIDYG 874
Query: 2226 HNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDLGYHRDNEKVYMDDPILTV 2405
HN + Y N W + +D+++ DYNA L+Q Y EG +G HRDNEKVY +D IL++
Sbjct: 875 HNRIKYAHNHW-NGVDQLLP-SSLRNDYNAMLIQVYKEGGSIGMHRDNEKVYDNDSILSI 932
Query: 2406 NMSGIAKFSLEFRGGVR-DVEMHDASFLIMPKGMQKQARHKVHAYTR-RISITFRKHVRD 2579
N++G A F +E + R M D + +M + Q + RH V T RI++TFRKHVR+
Sbjct: 933 NLNGDALFQIEAKSSKRYSFRMKDGDYFLMKRDFQAKFRHGVQGATEGRINVTFRKHVRN 992
Query: 2580 LSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRALESFDKVKWSNFFKEDSGAT 2759
I + K KN+CL+ +++ K + AL +K W++F + G T
Sbjct: 993 SRNEPIYLGIS----KFKNICLMRSLSILEKRPLYDILLALIKKNKNYWTSFLEFGVGGT 1048
Query: 2760 LHDCSDLAEALKLNLEVHCDEKISVMSFGHTLVKIQFRKGHYTLLREFT-NLPRSSFSHA 2936
L D + AE L E++ +EK + ++ H+++ RE + N+ + + +
Sbjct: 1049 LADLNQAAEDLSFRFELYMNEKWIAGGNRGPIYRLNLSDDHFSVHRELSGNVEDTQLNFS 1108
Query: 2937 QKKGNVNVIKGLIEH----ISKVEHYNAIQFNAEAEKFLKLRKSFLQRTTGILLGEVLDN 3104
+ K + + + +EH N F + LR+SFL RTTG +L +
Sbjct: 1109 KAKSKQSNFSSSDDDNSFDLDSIEHVNKSLFEPLNDAAELLRQSFLNRTTGKILSDAFGE 1168
Query: 3105 GGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGNFIVVCPRVTLMH 3284
G + + + +Y GFAGSGKS +Q L K F+V+CPRV L
Sbjct: 1169 NGAHLRRIRIVKSDDPFPEEVYFSC-GFAGSGKSLSLQSKLKSNFKLKFLVICPRVELKE 1227
Query: 3285 DWLFKLGSEPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFEL-TQMKSC 3461
DW K+ +HKVCTFE + + S+++LI++DEL LFP GYLD + F+L T+
Sbjct: 1228 DWERKVKCS---SHKVCTFEVALLQNLSRVELIVIDELGLFPRGYLDLMIFKLRTEKNFK 1284
Query: 3462 AEVVLIFDPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLP 3641
+V+L+FDPLQARYH+++D L H+ D +T ++ YL+ S+RL+K F F+ ++
Sbjct: 1285 GKVMLLFDPLQARYHSDSDERFLHEIHECDRITSGAKINYLFESWRLSKKFFGNFFVDIE 1344
Query: 3642 MPSGTASDGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGL 3818
+ + + + ++ N + P D++LV SR EK+ + + LTFGEAQGL
Sbjct: 1345 LRNSGSVNYELDFFDNHIVAANEAKKRGFPIDLILVASRDEKNSFAGKVNVLTFGEAQGL 1404
Query: 3819 TFNHVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRK 3998
T H CIVLSE ++ RW VALTRAKE++SF SH G+ F+ S +L
Sbjct: 1405 TVKHSCIVLSEYAEKQDDYRWVVALTRAKEKISFITSHRSGLTGFMSSMIGRPIHAFLTG 1464
Query: 3999 EKINKVKLQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQI 4178
++ M LV G G DE+DRE+RL GDPFLKPF++LGQRIN E I
Sbjct: 1465 LPFTSNRMNWMVNCELVECHRATG-GRDEVDREDRLEGDPFLKPFVFLGQRINSEEYEII 1523
Query: 4179 EPECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCND 4358
EPE EP+ + HL IS+ N+A NFDLIR KE RE + L T+QFC YN G + +
Sbjct: 1524 EPEVIEPKGRVHLCISQENYALARNFDLIRAKEYREAKLMGLETNQFCHDYNRVGAQGSR 1583
Query: 4359 TTVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRC 4538
P+RF++I+P+H + DD+TFWMAVKKRL F EE R++L D++ +G LLY N K
Sbjct: 1584 HVASPLRFESIFPRHRSDDDLTFWMAVKKRLRFSEEFLERAKLKDSYSVGNLLYQNLKEK 1643
Query: 4539 FKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFE 4718
+ F DQ LL++C NDFE KKL KS+AT+ +HSIRSD+DW+++ +FLFMKSQLCTK+E
Sbjct: 1644 LSLSFSWDQGLLDECLNDFETKKLLKSKATLANHSIRSDIDWSMDKIFLFMKSQLCTKYE 1703
Query: 4719 KQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKH 4898
KQ+ DAKAGQTLACF HL+L +FAP+CRY+E +R L EEIYIHSN+NF+DLN WV K
Sbjct: 1704 KQYVDAKAGQTLACFSHLVLAKFAPYCRYMEKMLRRNLKEEIYIHSNKNFNDLNDWVVKF 1763
Query: 4899 FMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVM 5078
F VESDYEAFDA QD Y+L+FE+ +M+D G P+ I+ Y+DLKC LGCKLGHFA+M
Sbjct: 1764 FEEGEKVESDYEAFDASQDHYVLAFEVCVMEDMGLPNWFINDYIDLKCTLGCKLGHFAIM 1823
Query: 5079 RFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISL 5258
RFTGEF TFLFNTLAN+AFT RYE PIAFAGDDMC L + FE++ K+SL
Sbjct: 1824 RFTGEFSTFLFNTLANMAFTFARYECDHKTPIAFAGDDMCMLKACKVSDKFEDVLSKLSL 1883
Query: 5259 KAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLS 5438
KAKV RTE PMFCGW L++YGIVKEPELV+NRF +A + G + ECLENYAIEVSYAYSL
Sbjct: 1884 KAKVIRTEMPMFCGWNLSRYGIVKEPELVFNRFMVAKKRGNIDECLENYAIEVSYAYSLG 1943
Query: 5439 ERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQS 5564
E+LYEVLK E Q++YHQA VRFIV LDKLKTKV+ LF +Q+
Sbjct: 1944 EKLYEVLKREEQVEYHQAVVRFIVQRLDKLKTKVKDLFSDQN 1985
>gb|AFA43556.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 944 bits (2440), Expect = 0.0
Identities = 466/618 (75%), Positives = 518/618 (83%), Gaps = 3/618 (0%)
Frame = +3
Query: 3735 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 3914
VLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 3915 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4094
SFC + LGG+DDF + L L+ EKI +L M + NL+ ++ + GC DE+DR
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCS-DEVDR 119
Query: 4095 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4274
EERL GDPFLKPFI+LGQRI + + E E EEPRCQTHL+I+EPNF CYNFD IR K
Sbjct: 120 EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179
Query: 4275 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4445
E+REYREDMLVT+QFCDSY+ I G R T GPMRFKAIYPKHS DDMTFWMAVKK
Sbjct: 180 EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPMRFKAIYPKHSADDDMTFWMAVKK 236
Query: 4446 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4625
RL+FREE EN RL AHL+GGLLY NFK ++F DQ LLE N FE KKL+KS+
Sbjct: 237 RLIFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRG 296
Query: 4626 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 4805
TIKSHSIRSD+DWALNDVFLFMKSQLCTK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 297 TIKSHSIRSDIDWALNDVFLFMKSQLCTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 356
Query: 4806 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 4985
LE+QIR QLPEEIY+HSN+NFDDLN+WVKK F RDI VESDYEAFDA QDEYILSFE+HL
Sbjct: 357 LETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDIFVESDYEAFDASQDEYILSFEIHL 416
Query: 4986 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5165
MKDA FP VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYEWR G
Sbjct: 417 MKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRG 476
Query: 5166 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5345
QPIAFAGDDMCALNNLP+ H F+++FE +SLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 477 QPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELV 536
Query: 5346 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5525
YNRFQ+AIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 537 YNRFQVAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQAVVRFIVTHIDK 596
Query: 5526 LKTKVRLLFEEQSSEEDI 5579
LKTKVR LF EQSS+EDI
Sbjct: 597 LKTKVRDLFLEQSSDEDI 614
>gb|AFA43558.1| replicase polyprotein, partial [Citrus leaf blotch virus]
Length = 614
Score = 940 bits (2430), Expect = 0.0
Identities = 464/618 (75%), Positives = 517/618 (83%), Gaps = 3/618 (0%)
Frame = +3
Query: 3735 VLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTAASNELRWFVALTRAKERV 3914
VLLV+S +EK + +TFGE+QGLTFNHVCI+LSES+AASNE RW VALTRAK R
Sbjct: 1 VLLVESDLEKKAFSPIINVMTFGESQGLTFNHVCILLSESSAASNEFRWMVALTRAKTRF 60
Query: 3915 SFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTRANLVFEDMEFGCGIDEMDR 4094
SFC + LGG+DDF + L L+ EKI +L M + NL+ ++ + GC DE+DR
Sbjct: 61 SFCSTCLGGIDDFKIKKGESLVTSILQGEKITFERLNMMVKCNLIKQEKKNGCS-DEVDR 119
Query: 4095 EERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQTHLFISEPNFAQCYNFDLIRLK 4274
EERL GDPFLKPFI+LGQRI + + E E EEPRCQTHL+I+EPNF CYNFD IR K
Sbjct: 120 EERLEGDPFLKPFIFLGQRIPKDQEKIEEVEIEEPRCQTHLYITEPNFGLCYNFDFIREK 179
Query: 4275 EEREYREDMLVTDQFCDSYN---IRGPRCNDTTVGPMRFKAIYPKHSNSDDMTFWMAVKK 4445
E+REYREDMLVT+QFCDSY+ I G R T GPMRFKAIYPKHS DDMTFWMAVKK
Sbjct: 180 EQREYREDMLVTNQFCDSYDKVHINGKR---ETPGPMRFKAIYPKHSADDDMTFWMAVKK 236
Query: 4446 RLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQA 4625
RL+FREE EN RL AHL+GGLLY NFK ++F DQ LLE N FE KKL+KS+
Sbjct: 237 RLIFREEEENYQRLSRAHLVGGLLYRNFKNKLGLEFTFDQGLLEDSINAFERKKLEKSRG 296
Query: 4626 TIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRY 4805
TI+SHSIRSD+DWALNDVFLFMKSQL TK+EKQF DAKAGQTLACFQHLILVQFAPWCRY
Sbjct: 297 TIRSHSIRSDIDWALNDVFLFMKSQLFTKYEKQFVDAKAGQTLACFQHLILVQFAPWCRY 356
Query: 4806 LESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHL 4985
LE+QIR QLPEEIY+HSN+NFDDLN+WVKK F RDICVESDYEAFDA QDEYILSFE+HL
Sbjct: 357 LETQIRNQLPEEIYVHSNKNFDDLNQWVKKFFQRDICVESDYEAFDASQDEYILSFEIHL 416
Query: 4986 MKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREG 5165
MKDA FP VIDAY+DLKCKLGCKLGHF++MRFTGEFCTFLFNTLAN+AFT+CRYEWR G
Sbjct: 417 MKDANFPQTVIDAYIDLKCKLGCKLGHFSIMRFTGEFCTFLFNTLANMAFTLCRYEWRRG 476
Query: 5166 QPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELV 5345
QPIAFAGDDMCALNNLP+ H F+++FE +SLKAKVERTE PMFCGWRLT YGIVKEPELV
Sbjct: 477 QPIAFAGDDMCALNNLPVCHAFDDLFELMSLKAKVERTESPMFCGWRLTPYGIVKEPELV 536
Query: 5346 YNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDK 5525
YNRFQ+AIEEGKVMECLENYAIEVSYAYSLSE LYEVLKSERQIQYHQA VRFIVTH+DK
Sbjct: 537 YNRFQVAIEEGKVMECLENYAIEVSYAYSLSEGLYEVLKSERQIQYHQAVVRFIVTHIDK 596
Query: 5526 LKTKVRLLFEEQSSEEDI 5579
LKTKVR LF EQSS+EDI
Sbjct: 597 LKTKVRDLFLEQSSDEDI 614
>ref|YP_008997790.1| replication-associated polyprotein [Apricot vein clearing associated
virus] gi|571026291|emb|CDF66416.2|
replication-associated polyprotein [Apricot vein clearing
associated virus]
Length = 1679
Score = 943 bits (2437), Expect = 0.0
Identities = 530/1178 (44%), Positives = 717/1178 (60%), Gaps = 44/1178 (3%)
Frame = +3
Query: 2172 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2351
++GR S F + S EIDYGHNG Y W + +D+ I D +NA LVQ YD+GS +
Sbjct: 511 FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKI 567
Query: 2352 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2531
G+H+DNE+ Y PILTVN G+A F EF G + D +++ ++ RH+V
Sbjct: 568 GFHKDNEQCYAGYPILTVNF-GLALF--EFDSG-EAFNLTDGDTILLSGDYLRKKRHRVT 623
Query: 2532 AYT-RRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 2702
+ + RIS+TFR+HV ++ + + +++ KN C+I AVA L S+ + K
Sbjct: 624 SLSDSRISLTFRRHVCRMNKSPLEFF-SNNGKLGKNKCIIHAVAMALGQTSNTVANKIVA 682
Query: 2703 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFG-HTLVKIQFR-- 2873
+ D ++ +D + + L+ + +++ M L+K F
Sbjct: 683 QRPDLLQC---LVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVL 739
Query: 2874 KGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNAIQFNAEAEKFLKLRK 3053
H +L + N ++ + ++ IQ+ A+ E+ +KL
Sbjct: 740 DEHMMVLSDIPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMN 799
Query: 3054 SFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKS--------R 3209
SFL TTG +L E++ G +FF + + GFAGSGKS R
Sbjct: 800 SFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKR 859
Query: 3210 VMQD-WLVKRKKG--------------------NFIVVCPRVTLMHDWLFKLGSEPRDAH 3326
+ ++ L K KKG + ++ PR L DW KLG +
Sbjct: 860 ISREIHLAKEKKGMGKGSGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHC 919
Query: 3327 KVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYH 3506
V TFE K SK+ LI++DELTLFPNGY+D L F + +++LIFDPLQARY
Sbjct: 920 SVTTFEVLFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYD 979
Query: 3507 NEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPM--------PSGTAS 3662
+ D IL EHDVD + G+ E+ Y+Y S R +E+L +G +
Sbjct: 980 SAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKKNEVDAESRETGKGA 1039
Query: 3663 DGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCI 3839
+ + +N +++ ++ P DVLLV S E ++ + +T+TFGE+QGLT +H I
Sbjct: 1040 KFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAI 1099
Query: 3840 VLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVK 4019
+LSE++A S++ RW VALTRA+++V+F HL G++ FL + ++ L + K + K +
Sbjct: 1100 LLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLVTKKR 1159
Query: 4020 LQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4199
L M RA L + + G DE+DRE+RL GD FLK I+LGQR E +EP +
Sbjct: 1160 LSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVMAKE 1219
Query: 4200 RCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTTVGPMR 4379
+TH F+ + NFAQCYNFD IR KE RE+R VT+QF D+Y I T GP+R
Sbjct: 1220 DMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHVQKKHTAGPLR 1279
Query: 4380 FKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHH 4559
F+AIYP+H DD+TF MAV KRL F E + R +L AH G +L++N + ++F
Sbjct: 1280 FEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTW 1339
Query: 4560 DQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAK 4739
D L E+C NDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+ DAK
Sbjct: 1340 DNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAK 1399
Query: 4740 AGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICV 4919
AGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSN+NF+DLN WVKKH D+CV
Sbjct: 1400 AGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKHAGDDLCV 1459
Query: 4920 ESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFC 5099
ESDYEAFDA QD+YILSFE+ +M+ P+++I AY+DLK LGCKLGHFA+MRFTGEF
Sbjct: 1460 ESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFS 1519
Query: 5100 TFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERT 5279
TFLFNTLAN+AFTMCRYEW G PIAFAGDDMCAL NL + F +FEKISLKAK + T
Sbjct: 1520 TFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQIT 1579
Query: 5280 ERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVL 5459
E PMFCGWRL+++GIVKEPELVYNRF +A+E G V +CLENYAIEVSYAYSL ERL+++L
Sbjct: 1580 EVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDIL 1639
Query: 5460 KSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSEE 5573
K E Q++YHQA VRFIV HL L+TKV+ LF EQS+E+
Sbjct: 1640 KREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSNED 1677
Score = 231 bits (589), Expect = 4e-57
Identities = 121/309 (39%), Positives = 177/309 (57%), Gaps = 7/309 (2%)
Frame = +3
Query: 36 ERISINNSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSED------HKFSRGCKKI 197
E ++ L+ +N ++ +D GRY V S S+S + F R K
Sbjct: 109 ESLATKGKKSVLKTINRLLCAKDFGRYD--VDTDSSVIRSISREAPDILPEPFVRAVKG- 165
Query: 198 LGLHKSFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKI 377
++ HDE+HHW+ + FL+ +P R VFSVVYP E+L G SQNPKMY F+
Sbjct: 166 ----RNVMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQD 221
Query: 378 IR-DRLFFFPDGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGR 554
+ D++ FFPDG SEGYEQ ANL WLF + WT+ R S Y+HHLFE+VPG
Sbjct: 222 SKSDKIVFFPDGRASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGN 281
Query: 555 LHTESTFFFNDFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKL 734
T+ FFNDF+ +D+ IFK+RF D P++ V +VYSYL+CLKKPD++S +AKL
Sbjct: 282 YFTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKL 341
Query: 735 RQIIGDDVEIKEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTW 914
+Q++GDD++++ +FF L R++ F +F +++ K ++ P +L+ TW
Sbjct: 342 KQLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLNGFMTW 401
Query: 915 KCNNLFEFL 941
K N + L
Sbjct: 402 KSGNFIKKL 410
>gb|AKN08998.1| replicase [Apricot vein clearing associated virus]
Length = 2021
Score = 941 bits (2432), Expect = 0.0
Identities = 533/1178 (45%), Positives = 713/1178 (60%), Gaps = 44/1178 (3%)
Frame = +3
Query: 2172 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2351
++GR S F + S EIDYGHNG Y W + +D+ I D +NA LVQ YD GS +
Sbjct: 853 FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDRGSKI 909
Query: 2352 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2531
+H+DNE+ Y PILTVN G+A F EF G + D +++ ++ RH+V
Sbjct: 910 SFHKDNEQCYAGYPILTVNF-GLALF--EFDSG-EAFNLTDGDTILLSGDYLRKKRHRVT 965
Query: 2532 AYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 2702
+ + RIS+TFR+HV ++ + + D K N C+I AVA L S+ + K
Sbjct: 966 SLSDGRISLTFRRHVCRMNKSPLEFFSNDGKLGK-NKCIIHAVAMALGQTSNTVANKIVA 1024
Query: 2703 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFG-HTLVKIQFR-- 2873
+ D ++ +D + + L+ + +++ M L+K F
Sbjct: 1025 QRPDLLQC---LVDDEMLDKQTTETICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVL 1081
Query: 2874 KGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNAIQFNAEAEKFLKLRK 3053
H +L + N ++ + ++ IQ+ A+ E+ +KL
Sbjct: 1082 DEHMMVLSDVPNCRSKKGIDICMSPDLANSNCAANYEVTCQNLQVIQYQADHERAIKLMN 1141
Query: 3054 SFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKS--------R 3209
SFL TTG +L E++ G +FF + + GFAGSGKS R
Sbjct: 1142 SFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKR 1201
Query: 3210 VMQD-WLVKRKK-----------------GNFIVVC---PRVTLMHDWLFKLGSEPRDAH 3326
+ ++ L K KK GN +C PR L DW KLG +
Sbjct: 1202 ISREIHLAKEKKRMGKGNGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHC 1261
Query: 3327 KVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYH 3506
V TFE F K SK+ LI++DELTLFPNGY+D L F + +++LIFDPLQARY
Sbjct: 1262 SVTTFEVFFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPDCKLILIFDPLQARYD 1321
Query: 3507 NEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENL--------PMPSGTAS 3662
+ D IL EHDVD + G+ E+ Y+Y S R +E+L +G +
Sbjct: 1322 SAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKKDEVDAESRETGKGA 1381
Query: 3663 DGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCI 3839
+ + +N +++ ++ P DVLLV S E ++ + +T+TFGE+QGLT +H I
Sbjct: 1382 KFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAI 1441
Query: 3840 VLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVK 4019
+LSE++A S++ RW VALTRA+++V+F HL G++ FL + ++ L + K + K +
Sbjct: 1442 LLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLIAAVINKGLVTKKR 1501
Query: 4020 LQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4199
L M RA L + + G DE+DRE+RL GD FLK I+LGQR E +EP +
Sbjct: 1502 LSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIVEPEIVEPVMAKE 1561
Query: 4200 RCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTTVGPMR 4379
+TH F+ + NFAQCYNFD IR KE RE+R VT+QF D+Y I T GP+R
Sbjct: 1562 DMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHGQKKHTAGPLR 1621
Query: 4380 FKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHH 4559
F+AIYP+H DD+TF MAV KRL F E + R +L AH G +L++N + ++F
Sbjct: 1622 FEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTW 1681
Query: 4560 DQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAK 4739
D L E+C NDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+ DAK
Sbjct: 1682 DNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAK 1741
Query: 4740 AGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICV 4919
AGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSN+NF+DLN WVKKH D+CV
Sbjct: 1742 AGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKHAGDDLCV 1801
Query: 4920 ESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFC 5099
ESDYEAFDA QD+YILSFE+ +M+ P+++I AY+DLK LGCKLGHFA+MRFTGEF
Sbjct: 1802 ESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFS 1861
Query: 5100 TFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERT 5279
TFLFNTLAN+AFTMCRYEW G PIAFAGDDMCAL NL + F +FEKISLKAK + T
Sbjct: 1862 TFLFNTLANMAFTMCRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQVT 1921
Query: 5280 ERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVL 5459
E PMFCGWRL+++GIVKEPELVYNRF +A+E G V +CLENYAIEVSYAYSL ERL+++L
Sbjct: 1922 EVPMFCGWRLSRFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDIL 1981
Query: 5460 KSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSEE 5573
K E Q++YHQA VRFIV HL L+TKV+ LF EQS E+
Sbjct: 1982 KREEQLEYHQAVVRFIVKHLGNLRTKVKDLFAEQSDED 2019
Score = 247 bits (630), Expect = 9e-62
Identities = 133/338 (39%), Positives = 192/338 (56%), Gaps = 9/338 (2%)
Frame = +3
Query: 36 ERISINNSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSED------HKFSRGCKKI 197
E ++ L+ +N ++ +D GRY V S S+S + F R K
Sbjct: 108 ESLATKGKKSVLKTVNRLLCAKDFGRYD--VDTDSSVIRSISREAPDILPEPFIRAVKG- 164
Query: 198 LGLHKSFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKI 377
++ HDE+HHW+ + FL+ +P R VFSVVYP E+L G SQNPKMY F+
Sbjct: 165 ----RNVMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGILESQNPKMYKFQD 220
Query: 378 IR-DRLFFFPDGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGR 554
+ D++ FFPDG SEGYEQ ANL WLF + WT+ R S Y+HHLFE+VPG
Sbjct: 221 SKSDKIVFFPDGKASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGN 280
Query: 555 LHTESTFFFNDFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKL 734
T+ FFNDF+ +D+ IFK+RF D P++ V +VYSYL+CLKKPD++S +AKL
Sbjct: 281 YFTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKL 340
Query: 735 RQIIGDDVEIKEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTW 914
+Q++GDD++++ +FF L R++ F +F +++ K ++ P +L+ TW
Sbjct: 341 KQLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTW 400
Query: 915 KCNNLFEFLYDLGTLNIEVERGVCYSHIMQNFP--FDV 1022
K N F+FL L L +EV + S +NF FDV
Sbjct: 401 KSGNFFDFLMSLKILQVEVPTEIVDSTFERNFVSLFDV 438
>gb|AKN09002.1| replicase [Apricot vein clearing associated virus]
Length = 2021
Score = 941 bits (2431), Expect = 0.0
Identities = 534/1178 (45%), Positives = 715/1178 (60%), Gaps = 44/1178 (3%)
Frame = +3
Query: 2172 WKGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDGDYNAALVQFYDEGSDL 2351
++GR S F + S EIDYGHNG Y W + +D+ I D +NA LVQ YD+GS +
Sbjct: 853 FRGRSSFFFARSNEIDYGHNGFKYRTENWFAELDDFIP---SDLIFNACLVQVYDKGSKI 909
Query: 2352 GYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKVH 2531
G+H+DNE+ Y PILTVN G+A F EF G + D +++ K+ RH+V
Sbjct: 910 GFHKDNEQCYAGYPILTVNF-GLALF--EFDSG-EAFNLTDGDTILLSGDYLKKKRHRVT 965
Query: 2532 AYT-RRISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGL--KSDPIKVKRAL 2702
+ + RIS+TFR+HV ++ + + D K N C+I AVA L S+ + K
Sbjct: 966 SLSDNRISLTFRRHVCRMNKSPLEFFSNDGKLGK-NKCIIHAVAMALGQTSNTVANKIVA 1024
Query: 2703 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKISVMSFG-HTLVKIQFR-- 2873
+ D ++ +D + + L+ + +++ M L+K F
Sbjct: 1025 QRPDLLQC---LVDDEMLDKQTTEAICVIMNLHATIVNEDEGETMELNPEGLIKSSFSVL 1081
Query: 2874 KGHYTLLREFTNLPRSSFSHAQKKGNVNVIKGLIEHISKVEHYNAIQFNAEAEKFLKLRK 3053
H +L + N ++ + + ++ IQ+ A+ E+ +KL
Sbjct: 1082 DEHMMVLSDVPNCMSKKGIDICMSPDLANSNCAVNYEVTCQNLQVIQYQADHERAIKLMN 1141
Query: 3054 SFLQRTTGILLGEVLDNGGKFFKEAHDLAIETKVVSNLYHCLTGFAGSGKS--------R 3209
SFL TTG +L E++ G +FF + + GFAGSGKS R
Sbjct: 1142 SFLAGTTGAVLNELVFKGSRFFTFMDSVNERKSDFVEELSFVPGFAGSGKSLGLLNEVKR 1201
Query: 3210 VMQD-WLVKRKK-----------------GNFIVVC---PRVTLMHDWLFKLGSEPRDAH 3326
+ ++ L K KK GN +C PR L DW KLG +
Sbjct: 1202 ISREIHLAKEKKRMGKGDGKGHEKKERNRGNLKSMCIISPRRNLADDWETKLGPSALEHC 1261
Query: 3327 KVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSCAEVVLIFDPLQARYH 3506
V TFE F K SK+ LI++DELTLFPNGY+D L F + +++LIFDPLQARY
Sbjct: 1262 SVTTFEVFFKASISKIKLIVVDELTLFPNGYIDLLIFRIRTESPNCKLILIFDPLQARYD 1321
Query: 3507 NEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENL--------PMPSGTAS 3662
+ D IL EHDVD + G+ E+ Y+Y S R +E+L +G +
Sbjct: 1322 SAQDRAILGSEHDVDLILGDSEVDYMYQSKRFESEELFNLFEDLKRNEVDAESQETGKGA 1381
Query: 3663 DGKIWLVSNPDSIRESFGDKEQP-DVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCI 3839
+ + +N +++ ++ P DVLLV S E ++ + +T+TFGE+QGLT +H I
Sbjct: 1382 KFRPRMYTNLLTMKVEEENQGNPIDVLLVGSFDEAGLFASSIKTMTFGESQGLTVDHAAI 1441
Query: 3840 VLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVK 4019
+LSE++A S++ RW VALTRA+++V+F HL G++ FL + ++ L + K I K +
Sbjct: 1442 LLSENSALSDDHRWLVALTRARKKVTFLCLHLSGLNGFLSTMENRLVAAVINKGLITKKR 1501
Query: 4020 LQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4199
L M RA L + + G DE+DRE+RL GD FLK I+LGQR E +EP +
Sbjct: 1502 LSSMVRAKLNYVKFKGLAGKDEVDREDRLEGDLFLKGVIFLGQRCEIMEPEIVEPVIAKE 1561
Query: 4200 RCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTTVGPMR 4379
+TH F+ + NFAQCYNFD IR KE RE+R VT+QF D+Y I T GP+R
Sbjct: 1562 DMKTHFFVCQENFAQCYNFDNIRAKELREFRIGHRVTNQFIDNYEIVQHGQKKHTAGPLR 1621
Query: 4380 FKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHH 4559
F+AIYP+H DD+TF MAV KRL F E + R +L AH G +L++N + ++F
Sbjct: 1622 FEAIYPRHCADDDVTFLMAVHKRLRFSNEMKEREKLERAHGTGSILFHNLIQKLGLNFTW 1681
Query: 4560 DQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAK 4739
D L E+C NDFE KKL+KS+A + +HSIRSD DW+ N VFLFMKSQLCTK+EKQ+ DAK
Sbjct: 1682 DNQLFEECVNDFECKKLEKSKAVLANHSIRSDNDWSPNWVFLFMKSQLCTKYEKQYVDAK 1741
Query: 4740 AGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICV 4919
AGQTLACFQH+ILV FAP+CRY+E Q+R QLP EIYIHSN+NF+DLN WVKK+ D+CV
Sbjct: 1742 AGQTLACFQHMILVTFAPYCRYMEKQLRAQLPGEIYIHSNKNFNDLNEWVKKYAGDDLCV 1801
Query: 4920 ESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFC 5099
ESDYEAFDA QD+YILSFE+ +M+ P+++I AY+DLK LGCKLGHFA+MRFTGEF
Sbjct: 1802 ESDYEAFDASQDQYILSFELFMMRHMHIPEQIIQAYIDLKVNLGCKLGHFAIMRFTGEFS 1861
Query: 5100 TFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERT 5279
TFLFNTLAN+AFTM RYEW G PIAFAGDDMCAL NL + F +FEKISLKAK + T
Sbjct: 1862 TFLFNTLANMAFTMRRYEWNSGDPIAFAGDDMCALKNLKVTDQFNNVFEKISLKAKTQIT 1921
Query: 5280 ERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVL 5459
E PMFCGWRL+++GIVKEPELVYNRF +A+E G V +CLENYAIEVSYAYSL ERL+++L
Sbjct: 1922 EVPMFCGWRLSKFGIVKEPELVYNRFMVALERGNVKDCLENYAIEVSYAYSLGERLFDIL 1981
Query: 5460 KSERQIQYHQATVRFIVTHLDKLKTKVRLLFEEQSSEE 5573
K E Q++YHQA VRFIV HL L+TKV+ LF EQS E+
Sbjct: 1982 KREEQLEYHQAVVRFIVKHLGDLRTKVKDLFAEQSDED 2019
Score = 246 bits (629), Expect = 1e-61
Identities = 130/332 (39%), Positives = 188/332 (56%), Gaps = 7/332 (2%)
Frame = +3
Query: 36 ERISINNSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSED------HKFSRGCKKI 197
E ++ L +N ++ +D GRY V S S+S + F R K
Sbjct: 108 ESLATKGKKSVLRTVNRLLCAKDFGRYD--VDTDSSVIRSISREAPDILPEPFIRAVKG- 164
Query: 198 LGLHKSFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKI 377
++ HDE+HHW+ + FL+ +P R VFSVVYP E+L G SQNPKMY F+
Sbjct: 165 ----RNVMIHDEVHHWTLDDMLGFLDRARPNRFVFSVVYPVELLAGIPESQNPKMYKFQD 220
Query: 378 IR-DRLFFFPDGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGR 554
+ D++ FFPDG SEGYEQ ANL WLF + WT+ R S Y+HHLFE+VPG
Sbjct: 221 SKSDKIVFFPDGKASEGYEQRANLRWLFCASHFRTSGSIWTVKRIYSAYSHHLFEVVPGN 280
Query: 555 LHTESTFFFNDFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKL 734
T+ FFNDF+ +D+ IFK+RF D P++ V +VYSYL+CLKKPD++S +AKL
Sbjct: 281 YFTDEIRFFNDFETIDLQCIFKSRFLCRDFVPISKDLVERVYSYLICLKKPDMQSAMAKL 340
Query: 735 RQIIGDDVEIKEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTW 914
+Q++GDD++++ +FF L R++ F +F +++ K ++ P +L+ TW
Sbjct: 341 KQLMGDDLDVRVQVFFRSLVHRILNESECFSLFDVSIVNKWKKKFLDFAPDWLLHGFMTW 400
Query: 915 KCNNLFEFLYDLGTLNIEVERGVCYSHIMQNF 1010
K N F+FL L L +EV + S +NF
Sbjct: 401 KSGNFFDFLMSLKILQVEVPTEIVDSTFERNF 432
>ref|YP_009103999.1| ORF1 [Carrot betaflexivirus 1] gi|558698257|gb|AHA85534.1| ORF1
[Carrot betaflexivirus 1]
Length = 1857
Score = 666 bits (1719), Expect = 0.0
Identities = 420/1154 (36%), Positives = 627/1154 (54%), Gaps = 42/1154 (3%)
Frame = +3
Query: 2175 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKI-CDPDG-DYNAALVQFYDEGSD 2348
K R++ + DYGH+ + Y GW + + E+ KI CD G +N+ L+ Y G
Sbjct: 707 KTRKAFYFCKDANFDYGHDKVKYQNMGWPNFISELNKIACDVTGFKFNSVLINEYTRGGR 766
Query: 2349 LGYHRDNEKVYMDD--PILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARH 2522
+ +H D+E VY D P+LTVNM G FS++ M ++M G QK+ +H
Sbjct: 767 IHWHADDENVYDLDRNPVLTVNMIGEGMFSVKMGKYEHSFPMSPGDMILMKNGAQKRMKH 826
Query: 2523 KVHAYTRRISITFRKHVRDLSGNSI-STIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRA 2699
V A RR+S+TFR+ +R S S+ S+IE + K CLI+++AE ++ K+
Sbjct: 827 SVIAKDRRVSLTFREQIRSKSLISLASSIEEEEINDLKESCLIDSLAEEIRISRSKLINL 886
Query: 2700 LESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCDEKIS---VMSFGHTLVKIQF 2870
L D K+D G T+ D S +A L L++ V D + S V + L+ ++
Sbjct: 887 LVKEDSTFLIKI-KDDKGLTIDDLSIIANLLNLSVRVLIDGQWSYFGVKESNYRLISLKL 945
Query: 2871 RKGHYTLLR-EFTNLPRSSFSHAQ--KKGNVNVIKGLIEHISKVEHY-NAIQFNAEAEKF 3038
K H+++ E L S + K + + I + N E+
Sbjct: 946 IKRHFSVYNGEVLKLALGDESSDKLIKLSDSGFYNSFLNKIDPRNKFVNKFDRMINFERA 1005
Query: 3039 LKLRKSFLQRTTGILLGEVLDNGGKFF---------------KEAHDLAIETKVVSNLYH 3173
L SFL+ +TG++ +NG +F K ++ VV
Sbjct: 1006 ALLIHSFLRGSTGVVTSSGFNNGVDYFSGRKRNIDPESFRDPKFLKEMTKGDAVVKGAV- 1064
Query: 3174 CLTGFAGSGKSRVMQDWLVKRKKG-NFIVVCPRVTLMHDWLFKLGSEPRDAHKVCTFETF 3350
+ GFAG GKSR +Q L +++ PRV L+ DW K+ ++K TF+T+
Sbjct: 1065 -ILGFAGCGKSRPVQMALDSMDSPMKILLISPRVNLLADWKLKV------SNKNVTFKTY 1117
Query: 3351 ---IKKEKSKLDLIILDELTLFPNGYLDWLTFE-------LTQMKSCAEVVLIFDPLQAR 3500
+K+ SK LII+DE L P GY D + ++ K +++LI DPLQA
Sbjct: 1118 ESALKENLSKFSLIIIDEFPLTPRGYTDVIAYKSKVDNLTCRLEKKVTKLLLIGDPLQAS 1177
Query: 3501 YHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGKIWL 3680
Y++E+D +L ++ L + +YL S RL K + N+ G+ W
Sbjct: 1178 YYSESDDDLLAQGGELSSLEIDYP-RYLLYSHRLPKGMKSMMDINM---LGSFEGETKWK 1233
Query: 3681 VSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSESTA 3860
+ N S +F +K DV+LV R EK+ +G F +TFGE+QGLTFN VCI L+E +
Sbjct: 1234 LYN--SAAAAFSEKAF-DVILVAGRQEKTFFGN-FTVMTFGESQGLTFNKVCIALTEDSL 1289
Query: 3861 ASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRMTR- 4037
+++ V LTRAKE ++F +++++ ++L L+ + I + +L+ M+
Sbjct: 1290 LASDNHMMVGLTRAKETINFIKGFGYPLNEYVKKAGNKLIGKVLQGKVIKRAELENMSGM 1349
Query: 4038 --ANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEPRCQT 4211
+ E FG E+++ GDP++K + L QR + EV IEP+ E + +
Sbjct: 1350 EDVTFITEPPTFG------GHEDKVQGDPWMKSLLTLTQREDSQEVELIEPDIVESKMKV 1403
Query: 4212 HLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDS-YNIRGPRCNDTTVGPMRFKA 4388
H+ I++ ++A D +R KE RE++ ++QF D+ N+ +T+ GP+ F+A
Sbjct: 1404 HINITDKSYALMIINDQLRAKENREFKSKDSWSNQFKDNDQNLN----LETSTGPVNFEA 1459
Query: 4389 IYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKIDFHHDQW 4568
I+P+H DD+TFWMAVKKRL F +L A + G +L+ F R +++ H
Sbjct: 1460 IFPRHQTFDDVTFWMAVKKRLSFSNPLVESEKLNKAWIKGSILHKEFTRLIRVNSHFRPD 1519
Query: 4569 LLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQFCDAKAGQ 4748
L EK NDFE +++KS+ I +H+ RSD DW + + LFMKSQLC K EK FCDAKAGQ
Sbjct: 1520 LFEKALNDFEDVRMRKSEKLIMAHAGRSDPDWDIRNFLLFMKSQLCKKAEKAFCDAKAGQ 1579
Query: 4749 TLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMRDICVESD 4928
T+ACF H +L +F+ WCRY E +I E +PE Y+HS +NFD+L RWVK +F+ ICVESD
Sbjct: 1580 TIACFAHGVLFKFSAWCRYAELKINEVMPEAFYVHSKKNFDELERWVKGNFIGPICVESD 1639
Query: 4929 YEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFTGEFCTFL 5108
YEAFDA QD IL+FE ++KD G+P ++I+ Y LK +LGCKLG A+MRFTGEF TF
Sbjct: 1640 YEAFDASQDSTILAFECLILKDVGWPHDLIEDYKTLKLELGCKLGMLAIMRFTGEFGTFF 1699
Query: 5109 FNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAKVERTERP 5288
FNTLAN+AFT CRY PI FAGDDMC L N +R++ + + LKAKVE P
Sbjct: 1700 FNTLANMAFTFCRYNVNRTTPICFAGDDMCILTNAKIRNEMNDFIGSLKLKAKVEWKINP 1759
Query: 5289 MFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERLYEVLKSE 5468
+FCGW L++ GI+K P LVY R IA E+G + +C+++Y IE YAY + E+L E
Sbjct: 1760 IFCGWILSRRGILKLPSLVYYRLNIAKEKGNLKDCIDSYMIEAGYAYRKGAFIEELL-DE 1818
Query: 5469 RQIQYHQATVRFIV 5510
Q+ +HQ +R ++
Sbjct: 1819 DQMSFHQLVIRSMI 1832
Score = 159 bits (402), Expect = 4e-35
Identities = 94/315 (29%), Positives = 164/315 (52%), Gaps = 12/315 (3%)
Frame = +3
Query: 66 NLEVLNHIIDGRDVGRYK-----------EVVFQHSFNFSSLSEDHKFSRGCKKILGLHK 212
++ ++N ++D +D RYK +++ ++ ++ L D + +G
Sbjct: 121 SINLINRLMDVKDSFRYKSGDGLSIKYPTQLLESNTRDYDPLM-DVRIEKG--------S 171
Query: 213 SFFFHDEIHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRL 392
+F FHDE+H+W+ + FL F+P ++ + V+P EIL G S P++Y+F+I++
Sbjct: 172 NFLFHDELHYWTFSMMLDFLEKFEPSHVICTAVFPVEILEGIKQSLYPEVYSFEILQTGN 231
Query: 393 FFF-PDGVTSEGYEQPANLFWLFKNKYLVDGDKTWTIVRHTSKYAHHLFEIVPGRLHTES 569
F F PDGV SE YEQ N+ WLF D+ +++ + AHHLF IV GR + S
Sbjct: 232 FVFAPDGVYSESYEQSVNMKWLFSASSFKVRDQIYSVDLIKTIGAHHLFTIVKGRRISRS 291
Query: 570 TFFFNDFDVVDMHHIFKNRFKRYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIG 749
F FD +DM ++K + V++ K+ YL LKKPD +S +AKLRQ++G
Sbjct: 292 IRLFKGFDTLDMSAFLGTKYK-MPIADVHFSFFKKIVIYLKSLKKPDTQSAVAKLRQLVG 350
Query: 750 DDVEIKEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLPKFLVRHTKTWKCNNL 929
D + + E LF E R E G + + + + + ++LP+F+ R +++ +NL
Sbjct: 351 DSISLTEVLFIEDFASRFQEHGAA-KLSNDGIFDQFIHSLKSILPEFVRRLMGSFQRDNL 409
Query: 930 FEFLYDLGTLNIEVE 974
+ + + + +E
Sbjct: 410 LKQISEAKAFEVRIE 424
>gb|AGK63259.1| replicase [Cherry mottle leaf virus]
Length = 1887
Score = 664 bits (1712), Expect = 0.0
Identities = 443/1172 (37%), Positives = 641/1172 (54%), Gaps = 49/1172 (4%)
Frame = +3
Query: 2175 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDE-IIKICDPDG-DYNAALVQFYDEGSD 2348
K ++S +++ + Y HN + YP + E I+K D G +NAALVQ Y++G
Sbjct: 703 KLKKSIYVTLDSPMVYFHNSISYPSMEASGLIKEWILKKADDYGVPFNAALVQVYEKGCI 762
Query: 2349 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 2528
LG H+DNE Y + PILTVN+SG A FS + G +E+ L+MP+ Q++ RH V
Sbjct: 763 LGMHKDNESCYGNHPILTVNVSGEATFSTDCCGNT--IELKSGDELLMPENFQRKFRHGV 820
Query: 2529 HAYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVK-RAL 2702
+ + R+S+T R H RD S E KK CL A+AE + P +V R L
Sbjct: 821 RSDSDGRMSVTLRVHERDFSFE-----EKRKFVDKKYDCLFIAIAEMISKKPEEVMLRCL 875
Query: 2703 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 2879
+ D+ + G L D + ++ +E D I V G L K+ R
Sbjct: 876 NTLDRCIMNK------GCDLTDLRSICNGYEIKVECQGDCGLIEVGDTGLPLGKLLLRGN 929
Query: 2880 HYTLLRE----FTNLPRSSFSHAQKKGNVN-VIKGLIEHISKVEHYNAI-QFNAEAEKFL 3041
H++L + +L S + G ++ V+ I+ + +E +I + + ++
Sbjct: 930 HFSLCSKRRSNLDSLANSMKEVSSLAGGLDYVMFNFIKRLKLIEPDISISETKVDIKRGG 989
Query: 3042 KLRKSFLQRTTGILLGEVLDNGGKFFKEAH----------------DLAIETKVVSNL-- 3167
KL K ++ TGI+ +G + K D + K++S L
Sbjct: 990 KLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSSDMRSLIGAMRGNVDGIEKNKLLSELEE 1049
Query: 3168 -------YHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEPRD 3320
+ + GFAGSGKS +Q+ + K +G+ +VVCPR L DW K G E D
Sbjct: 1050 LNFQKVPIYGIFGFAGSGKSHTIQNLISKEFRGSQGLMVVCPRKFLAKDWSEK-GVEEMD 1108
Query: 3321 AHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQMKSC--AEVVLIFDPLQ 3494
+ TFE+ +K + + ILDE+TL P G+ D L ++ + + ++ + DPLQ
Sbjct: 1109 ---IRTFESALKSDIKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKNSTIICLGDPLQ 1165
Query: 3495 ARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMP-SGTASDGK 3671
A Y ++ D L+ E +V L E ++Y + S R+NK Q P +G +
Sbjct: 1166 ASYFSQKDDSYLEREAEVKRLFPEG-VEYKWFSHRINKFVAKQLSIQTTNPFAGIDGQSQ 1224
Query: 3672 IW--LVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVL 3845
I+ + S SIR++ + E ++LV S +EK +Y RT+TFGE+QGLTF IVL
Sbjct: 1225 IYGDVQSAICSIRKTGVEVE---IILVASMIEKELYNNLGRTITFGESQGLTFGVGVIVL 1281
Query: 3846 SESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINK--VK 4019
SE T ++ VA+TR + SF + G D+++ K+ L +K +
Sbjct: 1282 SEETKLCSDAHIMVAITRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGASKDFIL 1341
Query: 4020 LQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQGEVVQIEPECEEP 4199
+ NL + ++ G GIDEMDREERLSGDP+LK IYLG+R + E + E+
Sbjct: 1342 SSSSVKLNLSEKLIKKGAGIDEMDREERLSGDPWLKTQIYLGKRFHLREPLGQVCNLEDS 1401
Query: 4200 RCQTHLFI--SEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDT--TV 4367
+ HL I S+ + + N ++ +E+RE++ + QF + GP +
Sbjct: 1402 AIKCHLPICNSQTLYVELSN---MKAREDREFKGKDGWSKQFREE---AGPNWSSPYKIA 1455
Query: 4368 GPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFKI 4547
PM F+AIYP+H DD+TF+ A+KKRL F N + + G L F ++
Sbjct: 1456 QPMNFEAIYPRHRMDDDITFYAAIKKRLRFDNVASNYVKFKQSQSRGQYLLKVFLEHIEL 1515
Query: 4548 DFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQF 4727
+Q LL +CR +FE KL KS ATI +HS RSD DW L+ +FLFMKSQLCTKFEK+F
Sbjct: 1516 RPSRNQALLNQCRQEFEETKLNKSAATIGAHSQRSDPDWPLDRIFLFMKSQLCTKFEKRF 1575
Query: 4728 CDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFMR 4907
DAKAGQTLACFQH ILV+F+PWCRY+E + +PE YIH +NF +L + K+
Sbjct: 1576 EDAKAGQTLACFQHRILVEFSPWCRYVEKILSACMPENFYIHQRKNFSELESFAKRFSDG 1635
Query: 4908 DICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRFT 5087
CVESDY AFD QD IL+FE+ L++ G+ + ++++Y+ +KC LGCKLG FA+MRFT
Sbjct: 1636 STCVESDYTAFDVSQDHTILAFEVELLRYVGWDESILNSYIKMKCTLGCKLGGFAIMRFT 1695
Query: 5088 GEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKAK 5267
GEF TFLFNTLAN+AFT CRYE ++G PI FAGDDMCAL NL E I EK+SLKAK
Sbjct: 1696 GEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREMSKHEHILEKLSLKAK 1755
Query: 5268 VERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSERL 5447
V RT PMFCGWRL Q G++KEP L+Y R +AIE G++++ +++Y +E S+AY L ERL
Sbjct: 1756 VNRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGRLLDVIDSYYLEFSFAYKLGERL 1815
Query: 5448 YEVLKSERQIQYHQATVRFIVTHLDKLKTKVR 5543
++ L+ Q+ YHQ RF V + L+ R
Sbjct: 1816 FQYLEI-GQLNYHQVLARFSVKNSHLLRGSAR 1846
Score = 118 bits (295), Expect = 1e-22
Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 13/281 (4%)
Frame = +3
Query: 66 NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 245
N ++ N ++ RD RY ++ S ++F HDEIH+W
Sbjct: 120 NYDIFNRLVTSRDKSRYGDLTQPSRIGGPKGS-----------------NYFIHDEIHYW 162
Query: 246 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 425
S+ + FL+ +PR L ++V+PPEIL GY +S P +Y F+I + L + PDG SE
Sbjct: 163 SRPQLETFLDLKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDGSRSES 222
Query: 426 YEQPANLFWL-------FKNKYLVDG-DKTWTIVRHTSKYAHHLFEIVPG-RLHTESTFF 578
Y Q +L FKNK DG K +++ + +HH+F I P L +
Sbjct: 223 YTQSIENGYLLSTNCISFKNK---DGVRKQYSVSLVYTLGSHHVFHIFPNLGLIEDEVRR 279
Query: 579 FNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDD 755
F +D+ D+ +FK + FP++ K++ Y+ LKKPD +S +AKLRQ+ +
Sbjct: 280 FGPYDLFDVGSLFKKPVRVPIQGFPLS--TFKKIFIYMSSLKKPDEQSAVAKLRQLCDSE 337
Query: 756 VEIKEFLFFEQLCKRLIERGTSFG---MFGHTLLEHLFLKM 869
+ I+ ++ KR IE+G F L +H F K+
Sbjct: 338 ISIEAVFLIQEFAKR-IEKGGVLSWSCSFFEYLKDHFFDKI 377
>ref|NP_062428.1| replicase [Cherry mottle leaf virus]
gi|9294781|gb|AAF86666.1|AF170028_1 216kDa protein
[Cherry mottle leaf virus]
Length = 1887
Score = 660 bits (1704), Expect = 0.0
Identities = 436/1183 (36%), Positives = 639/1183 (54%), Gaps = 60/1183 (5%)
Frame = +3
Query: 2175 KGRRSAFLSTSPEIDYGHNGMVYPR-------NGWLSSMDEIIKICDPDGDYNAALVQFY 2333
KG++S +++ + Y HN + YP W+ S E D +NAALVQ Y
Sbjct: 703 KGKKSVYVTLDSPMVYFHNSISYPSIEATGLIKDWILSKAE-----DYGVPFNAALVQVY 757
Query: 2334 DEGSDLGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQ 2513
++ LG H+DNE Y + PILTVN+SG A FS + G +++ D L+MP+ Q++
Sbjct: 758 EKDCILGMHKDNESCYGNHPILTVNVSGKAVFSTDCCGNTMELDSGDE--LLMPEDFQRK 815
Query: 2514 ARHKVHAYTR-RISITFRKHVRDLSGNSISTIEADSDWKKKNMCLIEAVAEGLKSDPIKV 2690
RH V + T R+S+T R H RD S E + K CL A+A + P +
Sbjct: 816 FRHGVKSITDGRMSVTLRVHERDFSFE-----EKRKFIEGKYDCLFVAMAAMISKKPEDI 870
Query: 2691 K-RALESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKI 2864
+ L + D+ + G L D + ++ +E D + + G L K+
Sbjct: 871 MFKCLNTLDRCVMNK------GCDLTDLRSICSGYEIKVECQGDCGLVEIGDIGLPLGKL 924
Query: 2865 QFRKGHYTLLRE----FTNLPRSSFSHAQKKGNVN-VIKGLIEHISKVE-HYNAIQFNAE 3026
R H+TL + +L SS + G ++ V+ I+ + +E + + +
Sbjct: 925 ILRGNHFTLCSKRRSNLDSLANSSKDVSSLSGGIDYVMVNFIKRLRSIEPDLSRSEIKVD 984
Query: 3027 AEKFLKLRKSFLQRTTGILLGEVLDNGGKFFKEAHDLAI----------------ETKVV 3158
++ KL K ++ TGI+ +G + K + A + K++
Sbjct: 985 IKRGGKLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRSLIGAMRGNVDGMEKNKLL 1044
Query: 3159 SNL---------YHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLG 3305
+ L + + GFAGSGKS +Q+ + K +G+ ++VCPR L DW K G
Sbjct: 1045 NELEELNFQKVPIYGIFGFAGSGKSHAIQNLIAKEFRGSQGLMIVCPRKFLAKDWSEK-G 1103
Query: 3306 SEPRDAHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDWLTFELTQ---MKSCAEVVL 3476
E D + TFE+ +K + + ILDE+TL P G+ D L ++ +KS + ++
Sbjct: 1104 VEEMD---IRTFESALKSDIKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKS-STIIC 1159
Query: 3477 IFDPLQARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMP-SG 3653
+ DPLQA Y ++ D L+ E +V L + ++Y + S R+NK Q G
Sbjct: 1160 LGDPLQASYFSQKDDSYLEREPEVKRLFKDG-VEYKWFSHRVNKFTARQLSITTTNTFPG 1218
Query: 3654 TASDGKIW--LVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFN 3827
S +I+ + S SI+++ D E ++LV S +EK +Y RT+TFGE+QGLTF
Sbjct: 1219 IDSQSQIYGDVQSAICSIQKTGIDVE---IILVASMIEKELYCNLGRTITFGESQGLTFG 1275
Query: 3828 HVCIVLSESTAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKI 4007
+VLSE T ++ VA+TR + SF + G D+++ K+ L
Sbjct: 1276 VGVVVLSEETKLCSDAHIMVAITRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGA 1335
Query: 4008 NK--VKLQRMTRANLVFEDMEFGCGIDEMDREERLSGDPFLKPFIYLGQRINQ----GEV 4169
+K + + NL + ++ G GIDEMDREERLSGDP+LK I+LG+R + G+V
Sbjct: 1336 SKDFIMSSSSVKLNLSEKLIKTGAGIDEMDREERLSGDPWLKSQIFLGKRFHLREPLGQV 1395
Query: 4170 VQIEP---ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIR 4340
V +E +C P C E +R +E+RE++ + QF +
Sbjct: 1396 VNLEDSAIKCHLPICNNQTLYVE--------LSKMRAREDREFKGKDGWSKQFREE---A 1444
Query: 4341 GPRCNDT--TVGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGL 4514
GP PM F+AIYP+H DD+TF+ A+KKRL F N ++ + G
Sbjct: 1445 GPNWKSPYKVAQPMNFEAIYPRHRMDDDITFYAAIKKRLRFDNVANNYAKFKQSQSRGQY 1504
Query: 4515 LYNNFKRCFKIDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMK 4694
L F + +Q LL +CR +FE KL KS ATI +HS RSD DW L+ +FLFMK
Sbjct: 1505 LLKVFLEHVNLKPSRNQALLNQCRQEFEETKLNKSAATIGAHSQRSDPDWPLDRIFLFMK 1564
Query: 4695 SQLCTKFEKQFCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDD 4874
SQLCTKFEK+F DAKAGQTLACFQH ILV+F+PWCRY+E + P+ YIH +NF +
Sbjct: 1565 SQLCTKFEKRFEDAKAGQTLACFQHRILVEFSPWCRYVEKILTACTPDNFYIHQRKNFSE 1624
Query: 4875 LNRWVKKHFMRDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGC 5054
L + K+ ICVESDY AFD QD IL+FE+ L++ G+ ++++++Y+ +KC LGC
Sbjct: 1625 LENFAKRFSDGSICVESDYTAFDVSQDHTILAFEVELLRFIGWDEKILNSYIKMKCTLGC 1684
Query: 5055 KLGHFAVMRFTGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFE 5234
+LG FA+MRFTGEF TFLFNTLAN+AFT CRYE ++G PI FAGDDMCAL NL E
Sbjct: 1685 RLGGFAIMRFTGEFSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREVSTHE 1744
Query: 5235 EIFEKISLKAKVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIE 5414
I +K+SLKAKV RT PMFCGWRL Q G++KEP L+Y R +AIE G++++ +++Y +E
Sbjct: 1745 HILDKLSLKAKVNRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGRLLDVIDSYYLE 1804
Query: 5415 VSYAYSLSERLYEVLKSERQIQYHQATVRFIVTHLDKLKTKVR 5543
S+AY L ERL++ L+ E Q+ YHQ RF V + L+ R
Sbjct: 1805 FSFAYKLGERLFQYLEIE-QLNYHQVLARFFVKNSHLLRGSAR 1846
Score = 117 bits (293), Expect = 2e-22
Identities = 87/285 (30%), Positives = 138/285 (48%), Gaps = 13/285 (4%)
Frame = +3
Query: 54 NSNPNLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDE 233
+S N ++ N ++ RD RY ++ S ++F HDE
Sbjct: 116 HSVKNYDIFNRLVTSRDKSRYGDLTQPTRVGGPKGS-----------------NYFIHDE 158
Query: 234 IHHWSKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGV 413
IH+WS+ + FL+ +PR L ++V+PPEIL GY +S P +Y F+I + L + PDG
Sbjct: 159 IHYWSRTQLETFLDIKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDGS 218
Query: 414 TSEGYEQPANLFWL-------FKNKYLVDG-DKTWTIVRHTSKYAHHLFEIVPGR-LHTE 566
SE Y Q +L FKNK DG K +++ + +HH+F I P L +
Sbjct: 219 RSESYTQSIENGYLLSTNCISFKNK---DGLRKQYSVTLVYTLGSHHVFHIFPNMGLIED 275
Query: 567 STFFFNDFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQI 743
F +D+ D+ +FK + FP++ K++ Y+ LKKPD +S +AKLRQ+
Sbjct: 276 EIRRFGPYDLFDVGTLFKKPVRVPIQGFPLS--TFKKIFIYMSSLKKPDEQSAVAKLRQL 333
Query: 744 IGDDVEIKEFLFFEQLCKRLIERGTSFG---MFGHTLLEHLFLKM 869
++ I+ ++ KR IE+G F L +H F K+
Sbjct: 334 CDAEISIEAVFLIQEFAKR-IEKGGILSWSCSFFDYLKDHFFDKI 377
>ref|YP_224130.1| 216 kDa protein [Apricot pseudo-chlorotic leaf spot virus]
gi|57639322|gb|AAW55581.1| 216 kDa protein [Apricot
pseudo-chlorotic leaf spot virus]
Length = 1892
Score = 653 bits (1685), Expect = 0.0
Identities = 427/1186 (36%), Positives = 636/1186 (53%), Gaps = 52/1186 (4%)
Frame = +3
Query: 2175 KGRRSAFLSTSPEIDYGHNGMVYPRNGWLSSMDEIIKICDPDG--DYNAALVQFYDEGSD 2348
KG++ + + Y HN + YP + E I D D+NA+L+Q Y++GS
Sbjct: 707 KGKKGGYFVLDYPMVYFHNNVSYPSFEATMKIKECILKARRDWNIDFNASLIQIYEKGSI 766
Query: 2349 LGYHRDNEKVYMDDPILTVNMSGIAKFSLEFRGGVRDVEMHDASFLIMPKGMQKQARHKV 2528
+G H+DNE+ Y DD +LT+N+ G A FS+ V +E+ + + L+MP G QK+ +H V
Sbjct: 767 IGMHKDNEECYDDDGVLTLNVKGNATFSVSCHDNV--IELKEGNELLMPPGYQKKFKHGV 824
Query: 2529 HAYTR-RISITFRKHVRDLSGNS-ISTIEADSDWKKKNMCLIEAVAEGLKSDPIKVKRAL 2702
+ + RIS+T R H RD S S + I+ D C+I ++A ++ D ++ +
Sbjct: 825 KSESEGRISVTLRVHKRDFSFRSKVGFIKGKYD------CMISSLASLIRKDQDEMCAFV 878
Query: 2703 ESFDKVKWSNFFKEDSGATLHDCSDLAEALKLNLEVHCD-EKISVMSFGHTLVKIQFRKG 2879
+ N + G ++ D ++ A + + V D I V S G L ++ R
Sbjct: 879 PNV-----LNRCISNKGCSIDDLKEMCMAYEFKVPVEGDCGSIEVGSHGMPLGRLNLRGN 933
Query: 2880 HYTLL-REFTNLPRSSFSHAQKKG---NVNVIKGLIEHISKVE-HYNAIQFNAEAEKFLK 3044
H++++ +NL + S + K N +V + VE Y + + + +K
Sbjct: 934 HFSVVSSRRSNLDSLANSKSDKDTSLVNSHVWLNFRKRFLAVEPDYTKTEVKCDLLRAVK 993
Query: 3045 LRKSFLQRTTGIL--------------------------LGEVLDNGGKFFKEAHDLAIE 3146
L KS + TGI+ + + LD+ +KE +L E
Sbjct: 994 LLKSLNEGMTGIVSHNAAHEGWRMIKGVNSPAEMRKLTQILKGLDDDDVEWKERSNLIKE 1053
Query: 3147 TKVVSNLYHCLTGFAGSGKSRVMQDWLVKRKKGN--FIVVCPRVTLMHDWLFKLGSEPRD 3320
++ + + GFAGSGKS +Q+ + KG+ +VVCPR L DW K G + +D
Sbjct: 1054 LNFINKTVYGVFGFAGSGKSNAIQNLIESEFKGSRGILVVCPRRFLASDWSEK-GVDSKD 1112
Query: 3321 AHKVCTFETFIKKEKSKLDLIILDELTLFPNGYLDW--LTFELTQMKSCAEVVLIFDPLQ 3494
+ TFE+ +K + ++ I DE++L P GY+D L + + + ++ + DPLQ
Sbjct: 1113 ---IKTFESALKMDIKGKNVFIFDEVSLLPKGYVDLMILKMHMEGILKTSTIICLGDPLQ 1169
Query: 3495 ARYHNEADAHILDFEHDVDCLTGEKELKYLYGSFRLNKNFHAQFWENLPMPSGTASDGK- 3671
A Y + D +IL E ++ L + + Y + S+R+NK F A M D +
Sbjct: 1170 ASYFSAKDDNILSKESEIKRLF-KDGVNYKWYSYRINK-FIASKLGVCGMNEFIGIDNQS 1227
Query: 3672 IWLVSNPDSIRESFGDKEQPDVLLVDSRVEKSVYGTQFRTLTFGEAQGLTFNHVCIVLSE 3851
+ P + K P+V+LV S +EK +Y +TFGE+QGLTF IVLSE
Sbjct: 1228 VTYKDMPSAFHFMDSAKNHPEVVLVASMIEKELYSNYQNVMTFGESQGLTFGCGIIVLSE 1287
Query: 3852 STAASNELRWFVALTRAKERVSFCISHLGGMDDFLVSCKSELPRMYLRKEKINKVKLQRM 4031
++ VA+TR ++ F + GG +D L + K L + + ++ + M
Sbjct: 1288 EAKLCSDAHIMVAITRFRKGFCFVLGSKGGKEDNLRTLKGGLLQRIVSNLGASREFITNM 1347
Query: 4032 TRANLVFED--MEFGCGIDEMDREERLSGDPFLKPFIYLGQRIN----QGEVVQIEP--- 4184
+ L + + G GIDEMDREERL GD +LK I+LG+R + G+VV++E
Sbjct: 1348 SSVPLKLSEKVTKKGAGIDEMDREERLQGDAWLKSMIFLGKRYHLIKPLGQVVELEDSAI 1407
Query: 4185 ECEEPRCQTHLFISEPNFAQCYNFDLIRLKEEREYREDMLVTDQFCDSYNIRGPRCNDTT 4364
+C P C E I+ +E RE++ ++Q R
Sbjct: 1408 KCHIPVCSVQTLGPE--------LGRIQAREYREFKGKNGWSNQLERRLAPVLWRAPCKV 1459
Query: 4365 VGPMRFKAIYPKHSNSDDMTFWMAVKKRLVFREENENRSRLGDAHLIGGLLYNNFKRCFK 4544
M +AIYP+H DD+TF A+KKRL F EN ++ + G L F +
Sbjct: 1460 NQAMSHEAIYPRHRMDDDLTFLAAIKKRLRFASVAENYNKFRASKARGQYLLKVFLEKIQ 1519
Query: 4545 IDFHHDQWLLEKCRNDFEIKKLQKSQATIKSHSIRSDVDWALNDVFLFMKSQLCTKFEKQ 4724
I +Q LL+ CR +FE KL KS ATI +HS RSD DW L+ +FLFMKSQLCTKFEK+
Sbjct: 1520 IKSGRNQSLLDLCRQEFEETKLSKSSATIGAHSQRSDPDWPLDKIFLFMKSQLCTKFEKR 1579
Query: 4725 FCDAKAGQTLACFQHLILVQFAPWCRYLESQIREQLPEEIYIHSNRNFDDLNRWVKKHFM 4904
F +AKAGQTLACFQH ILV+F+PWCRY E + LP+ Y+H +NF +L ++ K+
Sbjct: 1580 FTEAKAGQTLACFQHEILVKFSPWCRYTEKILSSCLPDNFYVHQRKNFSELEKFAKRFSN 1639
Query: 4905 RDICVESDYEAFDACQDEYILSFEMHLMKDAGFPDEVIDAYVDLKCKLGCKLGHFAVMRF 5084
+CVESDY AFD QD IL+FE+ ++ G+ +++I++Y+ +KC LGC+LG FA+MRF
Sbjct: 1640 GSVCVESDYTAFDVSQDHTILAFEVEFLRYVGWDEKIIESYIKMKCTLGCRLGGFAIMRF 1699
Query: 5085 TGEFCTFLFNTLANIAFTMCRYEWREGQPIAFAGDDMCALNNLPLRHDFEEIFEKISLKA 5264
TGEF TFLFNTLAN+AFT CRY+ G PI FAGDDMCAL ++ + E I EK+SLKA
Sbjct: 1700 TGEFSTFLFNTLANMAFTFCRYQVPSGTPICFAGDDMCALRDIKEIPNHEHILEKLSLKA 1759
Query: 5265 KVERTERPMFCGWRLTQYGIVKEPELVYNRFQIAIEEGKVMECLENYAIEVSYAYSLSER 5444
KV RT+ PMFCGWRL G++KEP L+Y R Q+AIE ++ME +++Y +E S+AY L ER
Sbjct: 1760 KVNRTKVPMFCGWRLCSDGLIKEPCLIYERLQVAIENNRLMEVIDSYFLEFSFAYKLGER 1819
Query: 5445 LYEVLKSERQIQYHQATVRFIV--THLDKLKTKVRLLFEEQSSEED 5576
LY L+ E Q+ YHQ RF + HL + ++K + S+ED
Sbjct: 1820 LYSYLEIE-QLNYHQVLTRFFIKNKHLLRGESKANISELIWLSDED 1864
Score = 129 bits (325), Expect = 4e-26
Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 8/281 (2%)
Frame = +3
Query: 66 NLEVLNHIIDGRDVGRYKEVVFQHSFNFSSLSEDHKFSRGCKKILGLHKSFFFHDEIHHW 245
N +++N ++ +D RY V GC K + + F HDEIH+W
Sbjct: 120 NYDIINRLVVSKDKARYGPSVSPERV-------------GCPK----NSNLFIHDEIHYW 162
Query: 246 SKKSIFRFLNDFQPRRLVFSVVYPPEILGGYNNSQNPKMYTFKIIRDRLFFFPDGVTSEG 425
+K + FL+ +PR L ++V+PPEIL GY +S P +Y F+I L + PDGV SE
Sbjct: 163 NKGQLESFLSVTKPRNLWATLVFPPEILAGYRSSILPFIYQFEIQGKNLIYLPDGVRSES 222
Query: 426 YEQP-ANLFWLFKNKYLVDGDKTWTIVRHT-----SKYAHHLFEIVP-GRLHTESTFFFN 584
Y QP N + L N V+ KT R+ S +HHLF I P L E T F
Sbjct: 223 YSQPLENGYLLNTNSISVENKKTGGFKRYQISLIYSLGSHHLFHIFPCENLIPEETRRFG 282
Query: 585 DFDVVDMHHIFKNRFK-RYDMFPVNYQHVYKVYSYLLCLKKPDLESGLAKLRQIIGDDVE 761
+D+ D+ +F + FP++ K++ YL LKKPD +S +AKLRQ+ DV
Sbjct: 283 PYDLFDVGALFVKPVRVPIQDFPLS--TFKKIFIYLSSLKKPDEQSAVAKLRQLCDSDVS 340
Query: 762 IKEFLFFEQLCKRLIERGTSFGMFGHTLLEHLFLKMVNVLP 884
I+ ++ +R+ + G + + EH+ + + LP
Sbjct: 341 IESVFLIQEFAQRVEKDGIQ--RWSCSFWEHIKDRFFDALP 379
>gb|ACH73185.1| movement protein [Dweet mottle virus]
Length = 362
Score = 598 bits (1541), Expect = 0.0
Identities = 304/362 (83%), Positives = 334/362 (92%), Gaps = 1/362 (0%)
Frame = +1
Query: 5584 MASLINVSSLVNRVKLDQSVLGSDEINKLYGSEAPIVFKDEVKMVIPGNVDGEPIKLQAN 5763
MASLINVSSLVNRVKLDQS++GSDEINKLYGS+AP+VFKDEVKMVIPGN +GE IKLQAN
Sbjct: 1 MASLINVSSLVNRVKLDQSIIGSDEINKLYGSDAPLVFKDEVKMVIPGNAEGEAIKLQAN 60
Query: 5764 ILTADRLQSIRNTKVKGKDAAYLHLGFVPIAIRSLLPSGNEAIWGRCALVDTSRTKSETA 5943
ILTADRLQSIRN KV GK+AAYLHLGFVPIAIRSLLPSGNE IWGRCALVDTSRT++ETA
Sbjct: 61 ILTADRLQSIRNAKVNGKEAAYLHLGFVPIAIRSLLPSGNEQIWGRCALVDTSRTRAETA 120
Query: 5944 VIDQFEFKFTKKQPFAAKLLTINASVDINCKVSVGSIQVLLELHGVDLREERSVAAIVTG 6123
VID+FEFKFTKKQPFAAKLLTINA+VDINCKVSVGSIQVLLELHGVDLREERSVAAI+TG
Sbjct: 121 VIDEFEFKFTKKQPFAAKLLTINAAVDINCKVSVGSIQVLLELHGVDLREERSVAAIITG 180
Query: 6124 LTCTPTNQMVLLHKIECDTPKWSLCNIIEQVEDEEESRKAFKNMFNASSSNLIDLGQEQW 6303
LTCTPTN+MVLLHKIECDTPKWSLCNIIEQVEDEEES+KAF+NMFNASSSNLIDLGQEQW
Sbjct: 181 LTCTPTNKMVLLHKIECDTPKWSLCNIIEQVEDEEESKKAFENMFNASSSNLIDLGQEQW 240
Query: 6304 LDEGKRMPLIGPLKMKGFGPRVMPVRRRNLTTKNLMKDYVSHVKSETSSLKRSQSGRNFG 6483
LDEGKR PLIG L +KGFG +VMPVRRRNLTTKNLMKDYVSHVKSET+SLKRSQSGR++G
Sbjct: 241 LDEGKRTPLIGNLAIKGFGRKVMPVRRRNLTTKNLMKDYVSHVKSETASLKRSQSGRDWG 300
Query: 6484 NEGLERYLKVQA-EQARLSTDQASIPKAKSRTIEVAEGNALYNLKDGVDEAGSSTASETG 6660
N+ L +YL+ QA EQAR STDQ + K +TIEV +++LKD +D+A SST S+TG
Sbjct: 301 NDRLRKYLEEQALEQARSSTDQQLVKAPKFKTIEVNGLETVHDLKDKIDKAESSTTSDTG 360
Query: 6661 TK 6666
TK
Sbjct: 361 TK 362
>ref|NP_624334.1| movement protein [Citrus leaf blotch virus]
gi|81964040|sp|Q91QZ2.1|MOVP_CLBVS RecName: Full=Putative
movement protein; Short=MP; AltName: Full=Cell-to-cell
transport protein gi|14270250|emb|CAC39423.1|
hypothetical protein [Citrus leaf blotch virus]
Length = 362
Score = 597 bits (1540), Expect = 0.0
Identities = 303/362 (83%), Positives = 334/362 (92%), Gaps = 1/362 (0%)
Frame = +1
Query: 5584 MASLINVSSLVNRVKLDQSVLGSDEINKLYGSEAPIVFKDEVKMVIPGNVDGEPIKLQAN 5763
MASLINVSSLVNRVKLDQS++GSDEINKLYGS+AP+VFKDEVKMVIPGN +GE IKLQAN
Sbjct: 1 MASLINVSSLVNRVKLDQSIIGSDEINKLYGSDAPLVFKDEVKMVIPGNAEGEAIKLQAN 60
Query: 5764 ILTADRLQSIRNTKVKGKDAAYLHLGFVPIAIRSLLPSGNEAIWGRCALVDTSRTKSETA 5943
ILTADRLQSIRN KV GK+AAYLHLGFVPIAIRSLLPSGNE IWGRCALVDTSRT++ETA
Sbjct: 61 ILTADRLQSIRNAKVNGKEAAYLHLGFVPIAIRSLLPSGNEQIWGRCALVDTSRTRAETA 120
Query: 5944 VIDQFEFKFTKKQPFAAKLLTINASVDINCKVSVGSIQVLLELHGVDLREERSVAAIVTG 6123
VID+FEFKFTKKQPFAAKLLTINA+VDINCKVSVGSIQVLLELHGVDLREERSVAAI+TG
Sbjct: 121 VIDEFEFKFTKKQPFAAKLLTINAAVDINCKVSVGSIQVLLELHGVDLREERSVAAIITG 180
Query: 6124 LTCTPTNQMVLLHKIECDTPKWSLCNIIEQVEDEEESRKAFKNMFNASSSNLIDLGQEQW 6303
LTCTPTN+MVLLHKIECDTPKWSLCNIIEQVEDEEES+KAF+NMFNASSSNLIDLGQEQW
Sbjct: 181 LTCTPTNKMVLLHKIECDTPKWSLCNIIEQVEDEEESKKAFENMFNASSSNLIDLGQEQW 240
Query: 6304 LDEGKRMPLIGPLKMKGFGPRVMPVRRRNLTTKNLMKDYVSHVKSETSSLKRSQSGRNFG 6483
LDEGKR PLIG L +KGFG +VMPVRRRNLTT+NLMKDYVSHVKSET+SLKRSQSGR++G
Sbjct: 241 LDEGKRTPLIGSLAIKGFGRKVMPVRRRNLTTRNLMKDYVSHVKSETASLKRSQSGRDWG 300
Query: 6484 NEGLERYLKVQA-EQARLSTDQASIPKAKSRTIEVAEGNALYNLKDGVDEAGSSTASETG 6660
N+ L +YL+ QA EQAR STD + K +TIEV +++LKD +D+A SSTAS+TG
Sbjct: 301 NDRLRKYLEEQALEQARSSTDHQLVKAPKFKTIEVTGLETVHDLKDKIDKAESSTASDTG 360
Query: 6661 TK 6666
TK
Sbjct: 361 TK 362