BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00000014
         (927 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 483   e-157
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   460   e-156
gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica m...   471   e-153
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   463   e-150
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   462   e-149
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   462   e-149
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   462   e-149
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   462   e-149
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   462   e-149
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   462   e-149
emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica ...   460   e-149
gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]                  450   e-145
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   403   e-127
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   357   e-110
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   238   1e-67
dbj|BAU45640.1| RNA-dependent RNA polymerase [Hydrangea ringspot...   237   3e-67
dbj|BAU45634.1| RNA-dependent RNA polymerase [Hydrangea ringspot...   237   3e-67
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   235   1e-66
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   229   1e-64
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               223   3e-62

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  483 bits (1243), Expect = e-157
 Identities = 229/256 (89%), Positives = 243/256 (94%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL A NQPT+TAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRL
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRL 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P 
Sbjct: 367 LRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T  +FREF
Sbjct: 427 PVNPDDAETTESFREF 442


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 669

 Score =  460 bits (1184), Expect = e-156
 Identities = 219/256 (85%), Positives = 235/256 (91%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++L+P   +LTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TAQRLETK
Sbjct: 187 RSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRI 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P 
Sbjct: 367 LRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T  +F+ F
Sbjct: 427 PVNPDDAETTHSFQAF 442


>gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1387

 Score =  471 bits (1212), Expect = e-153
 Identities = 223/257 (86%), Positives = 239/257 (92%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFH+YDQLEWLTVGHLTA  QPTITAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHRYDQLEWLTVGHLTAPGQPTITAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTP RRTF T++HYVTVP IFLPE YNCRTPISKT MMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPARRTFATSDHYVTVPQIFLPEDYNCRTPISKTTMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF+DVLSGNL+QRL
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFQDVLSGNLLQRL 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPLR+D QRVLQFF+GRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P 
Sbjct: 367 LRPLRADFQRVLQFFQGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQ 426

Query: 65  PVNPDDADTMRAFREFS 15
           PVNP+DADT R F++F+
Sbjct: 427 PVNPEDADTSRGFQDFT 443


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  463 bits (1191), Expect = e-150
 Identities = 219/256 (85%), Positives = 236/256 (92%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT   Q T+TAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T ++F+ F
Sbjct: 427 PVNPDDAETTQSFQAF 442


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  462 bits (1188), Expect = e-149
 Identities = 219/256 (85%), Positives = 235/256 (91%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T ++F+ F
Sbjct: 427 PVNPDDAETTQSFQAF 442


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  462 bits (1188), Expect = e-149
 Identities = 219/256 (85%), Positives = 235/256 (91%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T ++F+ F
Sbjct: 427 PVNPDDAETTQSFQAF 442


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  462 bits (1188), Expect = e-149
 Identities = 219/256 (85%), Positives = 235/256 (91%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T ++F+ F
Sbjct: 427 PVNPDDAETTQSFQAF 442


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  462 bits (1188), Expect = e-149
 Identities = 219/256 (85%), Positives = 235/256 (91%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T ++F+ F
Sbjct: 427 PVNPDDAETTQSFQAF 442


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  462 bits (1188), Expect = e-149
 Identities = 219/256 (85%), Positives = 235/256 (91%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T ++F+ F
Sbjct: 427 PVNPDDAETTQSFQAF 442


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  462 bits (1188), Expect = e-149
 Identities = 219/256 (85%), Positives = 235/256 (91%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT   Q T+TAQRLETK
Sbjct: 187 RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T ++F+ F
Sbjct: 427 PVNPDDAETTQSFQAF 442


>emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  460 bits (1184), Expect = e-149
 Identities = 219/256 (85%), Positives = 235/256 (91%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++L+P   +LTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TAQRLETK
Sbjct: 187 RSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRI 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P 
Sbjct: 367 LRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T  +F+ F
Sbjct: 427 PVNPDDAETTHSFQAF 442


>gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  450 bits (1158), Expect = e-145
 Identities = 215/256 (83%), Positives = 231/256 (90%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++L+P   +LTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA    T+TAQRLETK
Sbjct: 187 RSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KEAKERDIWAKFRQLISTKELQHYQPSE TLLVNYFE TASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSETTLLVNYFELTASLDSHTCFEDILSGNLLQRI 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR V+T LRGPP F +PFT+P 
Sbjct: 367 LRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVHTLLRGPPWFDSPFTRPQ 426

Query: 65  PVNPDDADTMRAFREF 18
           PVNPDDA+T   F+ F
Sbjct: 427 PVNPDDAETTHIFQAF 442


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  403 bits (1035), Expect = e-127
 Identities = 199/262 (75%), Positives = 217/262 (82%)
 Frame = -2

Query: 800 PATSPKTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQ 621
           P+TS ++LYP   +LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTA   PT+TAQ
Sbjct: 182 PSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQ 240

Query: 620 RLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFF 441
           RLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFF
Sbjct: 241 RLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFF 300

Query: 440 YIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGN 261
           YIKS KEA+      + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV    
Sbjct: 301 YIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPK 359

Query: 260 LIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNP 81
           L  +        I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NP
Sbjct: 360 LAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNP 419

Query: 80  FTKPHPVNPDDADTMRAFREFS 15
           FT+P PVNP+DAD    F++FS
Sbjct: 420 FTQPQPVNPEDADISSRFQDFS 441


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
           gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
           [Tulip virus X]
          Length = 1361

 Score =  357 bits (916), Expect = e-110
 Identities = 172/252 (68%), Positives = 202/252 (80%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++LYP   +LTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + +  T+TAQRLETK
Sbjct: 187 RSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLISEST-TVTAQRLETK 245

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
           GANHLFIFQRG YLTPERRTFTT   YVTVP+IFLP   N RTPI+KT+ MQ+FFYIKSV
Sbjct: 246 GANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSV 305

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           KE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RL
Sbjct: 306 KECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRL 365

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 66
           LRP R + Q +++FF+G P   KLIKAL WQP+ LEF V TV    R PPGF +P  +P 
Sbjct: 366 LRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPL 425

Query: 65  PVNPDDADTMRA 30
           PVN  DA T  A
Sbjct: 426 PVNEVDALTTAA 437


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
           RecName: Full=RNA replication protein; AltName: Full=176
           kDa protein; AltName: Full=ORF1 protein; Includes:
           RecName: Full=RNA-directed RNA polymerase; Includes:
           RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
           protein product [Papaya mosaic virus]
           gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
           virus]
          Length = 1547

 Score =  238 bits (608), Expect = 1e-67
 Identities = 118/230 (51%), Positives = 158/230 (68%), Gaps = 6/230 (2%)
 Frame = -2

Query: 782 TLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQP----TITAQRL 615
           +L+P    L + ++ F+Y PGGHAGA+Y HKY+QLEW+ VG    A++      +T+Q L
Sbjct: 190 SLHPGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQIL 249

Query: 614 ETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYI 435
           ETKGANHLFIFQRG +LTPE R F+T   YVT+P IFLP+++N R PI KT   Q+F Y+
Sbjct: 250 ETKGANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYV 309

Query: 434 KSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLI 255
           KSVK   ERDIWAK RQL+ T ELQ Y P E+TLLVNYF   A L S TCF++VLSG + 
Sbjct: 310 KSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMF 369

Query: 254 QRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 111
           ++L +P  +  +IQ+   F  G   F +L++AL+W  +TL +P +T + R
Sbjct: 370 KKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417


>dbj|BAU45640.1| RNA-dependent RNA polymerase [Hydrangea ringspot virus]
          Length = 1387

 Score =  237 bits (605), Expect = 3e-67
 Identities = 114/224 (50%), Positives = 155/224 (69%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++L+P   +L Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + +   ITAQR+ETK
Sbjct: 187 RSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
            ANHLF+F RG   TP  R+F     Y T+P IFLP ++N RTP +KT + QMF Y+KS+
Sbjct: 247 AANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSI 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           K+  E D++AKFRQL  T +LQ   P EITL+VNYF   + LDS TCF+D+LSG+ ++RL
Sbjct: 307 KKPTETDLYAKFRQLTKTDDLQELDPKEITLVVNYFLLISRLDSVTCFDDILSGSALRRL 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 114
           L+PL   ++++ Q   GR  FV+L+KAL+W  IT    V   +T
Sbjct: 367 LKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHT 410


>dbj|BAU45634.1| RNA-dependent RNA polymerase [Hydrangea ringspot virus]
          Length = 1387

 Score =  237 bits (605), Expect = 3e-67
 Identities = 114/224 (50%), Positives = 155/224 (69%)
 Frame = -2

Query: 785 KTLYPSPSSLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           ++L+P   +L Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + +   ITAQR+ETK
Sbjct: 187 RSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETK 246

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
            ANHLF+F RG   TP  R+F     Y T+P IFLP ++N RTP +KT + QMF Y+KS+
Sbjct: 247 AANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSI 306

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
           K+  E D++AKFRQL  T +LQ   P EITL+VNYF   + LDS TCF+D+LSG+ ++RL
Sbjct: 307 KKPTETDLYAKFRQLTKTDDLQELDPKEITLVVNYFLLISRLDSVTCFDDILSGSALRRL 366

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 114
           L+PL   ++++ Q   GR  FV+L+KAL+W  IT    V   +T
Sbjct: 367 LKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHT 410


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
           gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
           RNA polymerase [Cassava common mosaic virus]
           gi|1587823|prf||2207297A ORF 1 [Cassava common mosaic
           virus]
          Length = 1449

 Score =  235 bits (600), Expect = 1e-66
 Identities = 129/283 (45%), Positives = 168/283 (59%), Gaps = 22/283 (7%)
 Frame = -2

Query: 902 PPAQLSHTSVTTFMHSHTG--VGT--STEPNPSTTSAHPATSPK------TLYPSPSSLT 753
           PP Q S   +   +H  T   VGT  +  P   T  A     P+      +LYP   +L 
Sbjct: 138 PPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQ 197

Query: 752 YSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT--AANQP----------TITAQRLET 609
           Y E GF+Y PGGHAGASY+H+Y QL WL VG +     N P           +TAQR+ET
Sbjct: 198 YKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRIET 257

Query: 608 KGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKS 429
           KGANHLF+FQRG   TP+ R+  T   Y+TVP +FLP+K+N R P+ KTI  QMF YIKS
Sbjct: 258 KGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKS 317

Query: 428 VKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQR 249
           VK+  ERDI++K RQLI T ELQ Y P E+ LL NYF   + L S    E+VL+G+L ++
Sbjct: 318 VKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEVLAGSLFKK 377

Query: 248 LLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 120
           L RP++S +   +    G+P F +L++AL W  + L  PVR V
Sbjct: 378 LFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
           [Allium virus X]
          Length = 1701

 Score =  229 bits (585), Expect = 1e-64
 Identities = 115/223 (51%), Positives = 151/223 (67%), Gaps = 1/223 (0%)
 Frame = -2

Query: 782 TLYPSPSSLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETK 606
           +L+P+  +L+Y  E  F+Y PGGH GA Y H + QL+WL VG +   NQ  ITAQR+E+K
Sbjct: 186 SLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRVRYKNQ-IITAQRIESK 244

Query: 605 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 426
            ANHLF+FQRGN  TP  R F T + YVT+P IFLP+K+N R PI KT++MQ+F Y+K V
Sbjct: 245 AANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGV 304

Query: 425 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 246
            +  ERDI+AK RQLI T +LQ +  SE+  +VNYF F A  DS TCF D+LSG+L ++L
Sbjct: 305 AKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKL 364

Query: 245 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 117
            +PL + +     F  G P F KL+KAL WQ IT+   V  +N
Sbjct: 365 FQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  223 bits (568), Expect = 3e-62
 Identities = 116/248 (46%), Positives = 157/248 (63%), Gaps = 10/248 (4%)
 Frame = -2

Query: 782 TLYPSPSSLTYSEDG-------FMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 624
           +LYP+  SL+Y +         F Y PGGH GA Y H+  Q++WL  GH+    +  ITA
Sbjct: 188 SLYPNVYSLSYHKPSKFRRKALFSYAPGGHKGAEYVHELKQIDWLRFGHIIDG-KVCITA 246

Query: 623 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMF 444
           Q+LETK ANHLFI++RG Y TPE R F T   YVT+P IFLP ++N R PI KT++MQ+F
Sbjct: 247 QKLETKAANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFNHRVPIKKTLVMQLF 306

Query: 443 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 264
            Y+K+V  AKERDIWAK RQLI T++LQ Y P+EI  LVNYF F A   + T F+ +L G
Sbjct: 307 MYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLFIAKTSAVTSFDSMLDG 366

Query: 263 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLE---FPVRTVNTRLRGPPG 93
           ++I+++ RP+ +  +   Q   G   F +L++AL W  I L     PV+T + R  G   
Sbjct: 367 SIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDEIDLTLDVLPVKTHDWRRMGVAD 426

Query: 92  FHNPFTKP 69
            ++PFT P
Sbjct: 427 SNDPFTYP 434