BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia28_contig00000011
         (585 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   360   e-119
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 370   e-117
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   361   e-113
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   361   e-113
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   361   e-113
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   361   e-113
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   361   e-113
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   361   e-113
emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica ...   360   e-113
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   360   e-113
gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica m...   360   e-113
gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]                  350   e-109
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   291   5e-88
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   268   5e-80
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   181   3e-49
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A...   174   7e-47
ref|NP_077079.1| replicase [Clover yellow mosaic virus]               172   3e-46
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   171   4e-46
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548...   168   5e-45
dbj|BAU45629.1| RNA-dependent RNA polymerase [Alternanthera mosa...   168   7e-45

>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 669

 Score =  360 bits (925), Expect = e-119
 Identities = 171/194 (88%), Positives = 182/194 (93%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRI 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P 
Sbjct: 367 LRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T  +F+
Sbjct: 427 PVNPDDAETTHSFQ 440


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  370 bits (951), Expect = e-117
 Identities = 177/194 (91%), Positives = 186/194 (95%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRL
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRL 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P 
Sbjct: 367 LRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T  +FR
Sbjct: 427 PVNPDDAETTESFR 440


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  361 bits (926), Expect = e-113
 Identities = 171/194 (88%), Positives = 183/194 (94%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T ++F+
Sbjct: 427 PVNPDDAETTQSFQ 440


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  361 bits (926), Expect = e-113
 Identities = 171/194 (88%), Positives = 183/194 (94%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T ++F+
Sbjct: 427 PVNPDDAETTQSFQ 440


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  361 bits (926), Expect = e-113
 Identities = 171/194 (88%), Positives = 183/194 (94%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T ++F+
Sbjct: 427 PVNPDDAETTQSFQ 440


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  361 bits (926), Expect = e-113
 Identities = 171/194 (88%), Positives = 183/194 (94%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T ++F+
Sbjct: 427 PVNPDDAETTQSFQ 440


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  361 bits (926), Expect = e-113
 Identities = 171/194 (88%), Positives = 183/194 (94%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T ++F+
Sbjct: 427 PVNPDDAETTQSFQ 440


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  361 bits (926), Expect = e-113
 Identities = 171/194 (88%), Positives = 183/194 (94%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T ++F+
Sbjct: 427 PVNPDDAETTQSFQ 440


>emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  360 bits (925), Expect = e-113
 Identities = 171/194 (88%), Positives = 182/194 (93%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRI 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P 
Sbjct: 367 LRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T  +F+
Sbjct: 427 PVNPDDAETTHSFQ 440


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  360 bits (924), Expect = e-113
 Identities = 170/194 (87%), Positives = 183/194 (94%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRM 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P 
Sbjct: 367 LRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T ++F+
Sbjct: 427 PVNPDDAETTQSFQ 440


>gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1387

 Score =  360 bits (923), Expect = e-113
 Identities = 171/194 (88%), Positives = 181/194 (93%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTP RRTF T++HYVTVP IFLPE YNCRTPISKT MMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPARRTFATSDHYVTVPQIFLPEDYNCRTPISKTTMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF+DVLSGNL+QRL
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFQDVLSGNLLQRL 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPLR+D QRVLQFF+GRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P 
Sbjct: 367 LRPLRADFQRVLQFFQGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNP+DADT R F+
Sbjct: 427 PVNPEDADTSRGFQ 440


>gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  350 bits (899), Expect = e-109
 Identities = 167/194 (86%), Positives = 178/194 (91%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSV
Sbjct: 247 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSV 306

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEAKERDIWAKFRQLISTKELQHYQPSE TLLVNYFE TASLDSHTCFED+LSGNL+QR+
Sbjct: 307 KEAKERDIWAKFRQLISTKELQHYQPSETTLLVNYFELTASLDSHTCFEDILSGNLLQRI 366

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRPL S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR V+T LRGPP F +PFT+P 
Sbjct: 367 LRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVHTLLRGPPWFDSPFTRPQ 426

Query: 44  PVNPDDADTMRAFR 3
           PVNPDDA+T   F+
Sbjct: 427 PVNPDDAETTHIFQ 440


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
           gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
           replication protein; AltName: Full=156 kDa protein;
           AltName: Full=ORF1 protein; Includes: RecName:
           Full=RNA-directed RNA polymerase; Includes: RecName:
           Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
           [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  291 bits (744), Expect = 5e-88
 Identities = 144/194 (74%), Positives = 156/194 (80%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS 
Sbjct: 246 GANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSG 305

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KEA+      + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV    L  + 
Sbjct: 306 KEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKT 364

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
                  I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P 
Sbjct: 365 TPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQ 424

Query: 44  PVNPDDADTMRAFR 3
           PVNP+DAD    F+
Sbjct: 425 PVNPEDADISSRFQ 438


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
           gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
           [Tulip virus X]
          Length = 1361

 Score =  268 bits (685), Expect = 5e-80
 Identities = 130/192 (67%), Positives = 150/192 (78%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRG YLTPERRTFTT   YVTVP+IFLP   N RTPI+KT+ MQ+FFYIKSV
Sbjct: 246 GANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSV 305

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           KE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RL
Sbjct: 306 KECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRL 365

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPH 45
           LRP R + Q +++FF+G P   KLIKAL WQP+ LEF V TV    R PPGF +P  +P 
Sbjct: 366 LRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPL 425

Query: 44  PVNPDDADTMRA 9
           PVN  DA T  A
Sbjct: 426 PVNEVDALTTAA 437


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
           RecName: Full=RNA replication protein; AltName: Full=176
           kDa protein; AltName: Full=ORF1 protein; Includes:
           RecName: Full=RNA-directed RNA polymerase; Includes:
           RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
           protein product [Papaya mosaic virus]
           gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
           virus]
          Length = 1547

 Score =  181 bits (458), Expect = 3e-49
 Identities = 89/167 (53%), Positives = 116/167 (69%), Gaps = 2/167 (1%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLFIFQRG +LTPE R F+T   YVT+P IFLP+++N R PI KT   Q+F Y+KSV
Sbjct: 253 GANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSV 312

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           K   ERDIWAK RQL+ T ELQ Y P E+TLLVNYF   A L S TCF++VLSG + ++L
Sbjct: 313 KNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFKKL 372

Query: 224 LRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 90
            +P  +  +IQ+   F  G   F +L++AL+W  +TL +P +T + R
Sbjct: 373 FKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417


>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
           [Allium virus X]
          Length = 1701

 Score =  174 bits (440), Expect = 7e-47
 Identities = 85/162 (52%), Positives = 110/162 (67%)
 Frame = -2

Query: 581 ANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVK 402
           ANHLF+FQRGN  TP  R F T + YVT+P IFLP+K+N R PI KT++MQ+F Y+K V 
Sbjct: 246 ANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVA 305

Query: 401 EAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 222
           +  ERDI+AK RQLI T +LQ +  SE+  +VNYF F A  DS TCF D+LSG+L ++L 
Sbjct: 306 KVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLF 365

Query: 221 RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 96
           +PL + +     F  G P F KL+KAL WQ IT+   V  +N
Sbjct: 366 QPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407


>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
          Length = 1670

 Score =  172 bits (435), Expect = 3e-46
 Identities = 87/181 (48%), Positives = 118/181 (65%), Gaps = 3/181 (1%)
 Frame = -2

Query: 581 ANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVK 402
           ANHLFI++RG Y TPE R F T   YVT+P IFLP ++N R PI KT++MQ+F Y+K+V 
Sbjct: 254 ANHLFIYKRGKYFTPEIRNFNTQTKYVTLPKIFLPAQFNHRVPIKKTLVMQLFMYVKTVS 313

Query: 401 EAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 222
            AKERDIWAK RQLI T++LQ Y P+EI  LVNYF F A   + T F+ +L G++I+++ 
Sbjct: 314 AAKERDIWAKIRQLIKTEDLQEYSPTEIVHLVNYFLFIAKTSAVTSFDSMLDGSIIKKIF 373

Query: 221 RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLE---FPVRTVNTRLRGPPGFHNPFTK 51
           RP+ +  +   Q   G   F +L++AL W  I L     PV+T + R  G    ++PFT 
Sbjct: 374 RPVLAWFKSGYQRIFGLSEFNQLLEALSWDEIDLTLDVLPVKTHDWRRMGVADSNDPFTY 433

Query: 50  P 48
           P
Sbjct: 434 P 434


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
           gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
           RNA polymerase [Cassava common mosaic virus]
           gi|1587823|prf||2207297A ORF 1 [Cassava common mosaic
           virus]
          Length = 1449

 Score =  171 bits (434), Expect = 4e-46
 Identities = 81/162 (50%), Positives = 108/162 (66%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLF+FQRG   TP+ R+  T   Y+TVP +FLP+K+N R P+ KTI  QMF YIKSV
Sbjct: 259 GANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYIKSV 318

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           K+  ERDI++K RQLI T ELQ Y P E+ LL NYF   + L S    E+VL+G+L ++L
Sbjct: 319 KQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEVLAGSLFKKL 378

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 99
            RP++S +   +    G+P F +L++AL W  + L  PVR V
Sbjct: 379 FRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420


>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
           replicase [Tamus red mosaic virus]
          Length = 1501

 Score =  168 bits (426), Expect = 5e-45
 Identities = 83/187 (44%), Positives = 117/187 (62%)
 Frame = -2

Query: 581 ANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVK 402
           ANHLFIFQRG+ +TP  R F+T   +VT+P IFLPEK+N R PI KT++MQMF Y+K VK
Sbjct: 253 ANHLFIFQRGSLMTPCLRNFSTETKFVTLPLIFLPEKFNARQPIRKTLVMQMFLYVKGVK 312

Query: 401 EAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 222
           +  ERDIWAK+RQLI T++LQ +   E+  L NYF F     S  CF+DVL G  + R  
Sbjct: 313 QVSERDIWAKWRQLIKTEDLQDFSAIELLHLTNYFVFVGKQSSINCFDDVLKGGFLTRWF 372

Query: 221 RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHP 42
           +P+++  + V Q   G   FV+L++AL+W  + L+   +  + + R   GF +       
Sbjct: 373 KPIKNWFEMVRQKIFGEAEFVRLVRALEWTEVDLKLDTKNYDFKRREGNGFLS--LSKVA 430

Query: 41  VNPDDAD 21
             PDD++
Sbjct: 431 AGPDDSE 437


>dbj|BAU45629.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  168 bits (425), Expect = 7e-45
 Identities = 79/161 (49%), Positives = 108/161 (67%)
 Frame = -2

Query: 584 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 405
           GANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F Y+KSV
Sbjct: 253 GANHLFVFQRGNFSTPALRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYVKSV 312

Query: 404 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 225
           K   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF+++L+G  ++RL
Sbjct: 313 KTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNILTGGALKRL 372

Query: 224 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 102
            +P+ +          G+  F +L++AL+W  +TL + V T
Sbjct: 373 FKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVTLSYRVET 413