BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00058384
         (453 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]           224   3e-65
gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]           223   4e-65
gb|AKN59247.1| polyprotein [Lychnis mottle virus]                     201   4e-57
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v...   160   4e-43
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot...   160   9e-43

>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
          Length = 2209

 Score =  224 bits (570), Expect = 3e-65
 Identities = 110/151 (72%), Positives = 123/151 (81%)
 Frame = +1

Query: 1   GTVTDTQPALGSSYAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVR 180
           GTV+ T P +GSSYA + I +A GL V EY KFQAPRAGARNFL+ +   D EVLT +VR
Sbjct: 108 GTVSMTDPKIGSSYAGRKILKAKGLDVEEYAKFQAPRAGARNFLQPNCRTDVEVLTTIVR 167

Query: 181 TAIVNPGFGNPSFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVA 360
           TAI NPGFGNPSFDYTGLGGDEFKYRFDKDGLFADD+LGL RFVSAGFTEGSKP    VA
Sbjct: 168 TAIENPGFGNPSFDYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSKPNVFDVA 227

Query: 361 PLSFEDLDIITQALSDEWCEWIYFEEDYEEA 453
           PL+  D +++ +ALSDEW EW YFEEDYEEA
Sbjct: 228 PLTSGDFNVMMRALSDEWVEWCYFEEDYEEA 258


>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
          Length = 2205

 Score =  223 bits (569), Expect = 4e-65
 Identities = 110/151 (72%), Positives = 123/151 (81%)
 Frame = +1

Query: 1   GTVTDTQPALGSSYAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVR 180
           GTV+ T P +GSSYA + I +A GL V EY KFQAP+AG RNFL+ +   DAEVLT +VR
Sbjct: 108 GTVSMTVPKIGSSYAGRKILKAKGLDVEEYAKFQAPKAGVRNFLQPNCRTDAEVLTTIVR 167

Query: 181 TAIVNPGFGNPSFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVA 360
           TAI NPGFGNPSFDYTGLGGDEFKYRFDKDGLFADD+LGL RFVSAGFTEGS+P    VA
Sbjct: 168 TAIENPGFGNPSFDYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSRPNVFDVA 227

Query: 361 PLSFEDLDIITQALSDEWCEWIYFEEDYEEA 453
           PL+  D  ++ QALSDEW EWIYFEEDYEEA
Sbjct: 228 PLTSGDFKVMIQALSDEWSEWIYFEEDYEEA 258


>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
          Length = 2260

 Score =  201 bits (510), Expect = 4e-57
 Identities = 109/202 (53%), Positives = 124/202 (61%), Gaps = 51/202 (25%)
 Frame = +1

Query: 1   GTVTDTQPALGSSYAHQAIFEADGLGVVEYTKFQAPRAGARNFLRADRVCDAEVLTGVVR 180
           GT++ T P +G+SYA + IF+A G  V EYTKFQAP+AGARNFL+ DR  DAE+LT VVR
Sbjct: 108 GTISMTTPKIGASYAGRKIFKAKGFDVEEYTKFQAPKAGARNFLQPDRKSDAEILTTVVR 167

Query: 181 TAIVNPGFGNPSFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVA 360
           TAI NPGFGNPSFDYTGLGGDEF+YRF KDGLFADD+LGL RFVSAGFTEGS+     VA
Sbjct: 168 TAIENPGFGNPSFDYTGLGGDEFRYRFGKDGLFADDDLGLARFVSAGFTEGSRSNALDVA 227

Query: 361 PLSFEDLDII-------------------------------------------------- 390
           PL+  DLD+I                                                  
Sbjct: 228 PLTPGDLDVISFGTISMTNPKIGASYAGRKLARFVSAGFTEGSRSNALDVAPLTPGDLDV 287

Query: 391 -TQALSDEWCEWIYFEEDYEEA 453
            TQALSDEW  W + EEDYEEA
Sbjct: 288 MTQALSDEWVGWYHLEEDYEEA 309


>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
          Length = 719

 Score =  160 bits (404), Expect = 4e-43
 Identities = 83/142 (58%), Positives = 99/142 (69%), Gaps = 2/142 (1%)
 Frame = +1

Query: 31  GSSYAHQAIFEADGLGVVEYTKFQAPRAGA--RNFLRADRVCDAEVLTGVVRTAIVNPGF 204
           G SY  + I++A GL V +Y  FQ  +     R FL  DR  DAEVLT VVRTAIV  GF
Sbjct: 118 GDSYISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGF 177

Query: 205 GNPSFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLD 384
           G+P+FDYTGLGGD  KYRFD D L++D + GL RFVSAGFTE +K  G     L+ +D+D
Sbjct: 178 GSPTFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK--GSLDLKLTLQDVD 235

Query: 385 IITQALSDEWCEWIYFEEDYEE 450
            +TQALSDEW EW+YFEED EE
Sbjct: 236 EMTQALSDEWAEWVYFEEDLEE 257


>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
           gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
           [Strawberry latent ringspot virus]
          Length = 2227

 Score =  160 bits (404), Expect = 9e-43
 Identities = 83/142 (58%), Positives = 99/142 (69%), Gaps = 2/142 (1%)
 Frame = +1

Query: 31  GSSYAHQAIFEADGLGVVEYTKFQAPRAGA--RNFLRADRVCDAEVLTGVVRTAIVNPGF 204
           G SY  + I++A GL V +Y  FQ  +     R FL  DR  DAEVLT VVRTAIV  GF
Sbjct: 118 GDSYISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGF 177

Query: 205 GNPSFDYTGLGGDEFKYRFDKDGLFADDNLGLTRFVSAGFTEGSKPEGRSVAPLSFEDLD 384
           G+P+FDYTGLGGD  KYRFD D L++D + GL RFVSAGFTE +K  G     L+ +D+D
Sbjct: 178 GSPTFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTK--GSLDLKLTLQDVD 235

Query: 385 IITQALSDEWCEWIYFEEDYEE 450
            +TQALSDEW EW+YFEED EE
Sbjct: 236 EMTQALSDEWAEWVYFEEDLEE 257