BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00057629
         (1505 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo...   436   e-141
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo...   434   e-141
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   448   e-141
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   436   e-139
gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposo...   430   e-136
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   436   e-136
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   432   e-135
gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposo...   408   e-132
gb|KYP68414.1| Retrovirus-related Pol polyprotein from transposo...   402   e-131
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   421   e-130
gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposo...   401   e-130
gb|KYP63768.1| Retrovirus-related Pol polyprotein from transposo...   399   e-129
gb|KYP65286.1| Retrovirus-related Pol polyprotein from transposo...   402   e-128
gb|KYP68420.1| Retrovirus-related Pol polyprotein from transposo...   395   e-128
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo...   410   e-126
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo...   407   e-126
gb|KYP52268.1| Retrovirus-related Pol polyprotein from transposo...   394   e-125
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     400   e-124
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...   398   e-124
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   402   e-123

>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 839

 Score =  436 bits (1122), Expect = e-141
 Identities = 234/507 (46%), Positives = 308/507 (60%), Gaps = 8/507 (1%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNHV+N   N+     + G + + +GNG GI     G ++  S  N   S  L N
Sbjct: 13   PDSGASNHVTNVSHNIQQYTPFEGPDQIVIGNGQGIPINSSGVTHFSSPLNPHISLTLHN 72

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFNLHN 1149
            LLYVP+ITKNLISVSQFCKDN+VFFEF+  FCLVK +     LL G++  DGLY+F    
Sbjct: 73   LLYVPTITKNLISVSQFCKDNSVFFEFHSTFCLVKSQANSETLLHGVLGPDGLYQF---- 128

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                                P  + V+  + +    WH R+ HP +D++    K CN P 
Sbjct: 129  ------------PSLLPPRQPSAHTVS-SQSVSYATWHSRLGHPHNDVLKSVFKLCNFPN 175

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            +       C+SC L KSH+ P   S  VY+ P ELI+SDLWGPAP+ S NGY+YYV  +D
Sbjct: 176  INKSVSDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDLWGPAPVLSDNGYQYYVTFVD 235

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
              T+FTWI++LK K+     F QF  ++ NQ    IKA+QTDWGGE+R+ + +LA++GI+
Sbjct: 236  AHTRFTWIFMLKSKAHTLDVFKQFHAMVRNQFQLPIKAIQTDWGGEFRSFTSYLAQHGIH 295

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR  C +T  QNG  ERKHRHIVE GL+LLAQ+H+P+ FW  AF+TS YLINRLP+ S+ 
Sbjct: 296  HRIICPHTHHQNGVVERKHRHIVELGLTLLAQAHLPMHFWDYAFLTSVYLINRLPSSSIQ 355

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
               P  KL+ H P+Y  LRVFGC  +P+LRPYN  KL+FRS + VFLGY+  +KGYK L 
Sbjct: 356  QDVPFRKLFHHLPDYNFLRVFGCSCFPHLRPYNKTKLQFRSQECVFLGYSTSHKGYKCLA 415

Query: 248  PNGKIIITRHVTFDEGIFPYAN--SKNNPPTDSSTCTHVPSIPTLVNTN-----TGPSHT 90
            P+G++ I++ V F E  FPY    S + P   SS+ T VP    LV TN     T  SHT
Sbjct: 416  PSGRVFISKDVIFCENRFPYPTLFSPSTPSPSSSSIT-VP----LVVTNPQAPITSTSHT 470

Query: 89   TRSNDCPSNTDPFLDISQTSPAAQSSS 9
            + S+   +++ P    S TSP    S+
Sbjct: 471  SPSSPIFTDSSP-SQPSHTSPTPNPSA 496


>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 785

 Score =  434 bits (1116), Expect = e-141
 Identities = 227/482 (47%), Positives = 293/482 (60%), Gaps = 2/482 (0%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNHV+N   N+     + G + + +GNG G+     G +   S      S  L N
Sbjct: 261  PDSGASNHVTNMSHNIQQLTPFEGPDQIIIGNGHGLPINSSGVTAFPSPLKPHISLTLNN 320

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFNLHN 1149
            LLYVP+ITKNLISVSQFCKDN+VFFEF+   CLVK + T+  LL G+V  DGLY+F    
Sbjct: 321  LLYVPNITKNLISVSQFCKDNSVFFEFHSTCCLVKSQDTKDTLLMGVVGPDGLYQFPSLL 380

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                             H +P V             WH R+ HP +D++    + CN P 
Sbjct: 381  QPRQQPAITPSANTASCHSVPYVT------------WHSRLGHPHNDVIKSVFRLCNFPI 428

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            +       C+ C L KSH+ P   S  VY+ P ELI+SDLWGPAPI S NGY+YYV  +D
Sbjct: 429  INKTASDFCTPCCLGKSHKLPSNSSKTVYHTPFELIYSDLWGPAPITSDNGYQYYVTFVD 488

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
              T+FTWI+LLK+K+     F QF  +I+NQ    IKA+QTDWGGE+R+ + +LA+NGI 
Sbjct: 489  AHTRFTWIFLLKRKAHTLDVFKQFHAMIQNQFQLPIKAIQTDWGGEFRSFTSYLAQNGIQ 548

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR  C +T  QNG  ERKHRHIVE GL++LAQ+H+P++FW  AF+TS YLINRLP+ S+ 
Sbjct: 549  HRLICPHTHHQNGVVERKHRHIVELGLTMLAQAHLPMQFWDHAFLTSVYLINRLPSSSIQ 608

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
               P  KL+   P+Y  LR+FGC  +P+LRPYN +KL+FRS + VFLGY+  +KGYK L 
Sbjct: 609  NDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQFRSQECVFLGYSTSHKGYKCLA 668

Query: 248  PNGKIIITRHVTFDEGIFPYANSKNNPPTDSSTCTHVPSIPT-LVNTNTGPSHTTRSNDC 72
            P G+I I++ V F E  FPY +    P T+  T    PSIP  LV TN  P   T S+  
Sbjct: 669  PTGRIFISKDVVFCETRFPYPSLFPAPATNPLT----PSIPVPLVITNPQPPMQTDSSTL 724

Query: 71   PS 66
             S
Sbjct: 725  SS 726


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  448 bits (1153), Expect = e-141
 Identities = 232/505 (45%), Positives = 314/505 (62%), Gaps = 9/505 (1%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGA++H++ ++ NL T  ++   + +F+GNG G+   H G++   S+   S++  LK 
Sbjct: 355  PDSGATHHLTPNLNNLLTKSQFPSSDEVFVGNGKGLPIHHIGHTSFSSSFIPSKTLALKQ 414

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIVKDGLYKFN---- 1158
            LL+VP ITKNL+SVS+F  DN+VFFEF+P  C VKD  T+ +L+ G +K GLY F+    
Sbjct: 415  LLHVPEITKNLLSVSKFAADNHVFFEFHPTSCFVKDPSTRTVLMHGQLKGGLYVFDNTQL 474

Query: 1157 ---LHNXXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALK 987
               LHN                         V         LWH R+ HP+  IV   L 
Sbjct: 475  KLPLHNSSCFASTALPSKEP----------TVPASPTSPFTLWHNRLGHPSSHIVSLVLN 524

Query: 986  NCNLPYVINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKY 807
             CNLP++      +CS C + K H++ FL S   Y  PLELIH+DLWGPA   S +G++Y
Sbjct: 525  KCNLPHLNKIPSLICSXCCMGKIHKSSFLHSTSSYTKPLELIHTDLWGPASTPSSHGHQY 584

Query: 806  YVCSIDEFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFL 627
            Y+  ID +++FTWIY+LK KSE F  F+ FK+ +E QL  KIKAVQ+DWGGEYR+ +++L
Sbjct: 585  YIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQVELQLGHKIKAVQSDWGGEYRSFTQYL 644

Query: 626  AENGINHRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRL 447
              NGI HR SC YT +QNG AERKHRHIVE G++LLAQ+ +P ++W +AF TS YLINRL
Sbjct: 645  TSNGIIHRISCPYTHEQNGLAERKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRL 704

Query: 446  PTKSLTYKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYK 267
            PT  L  KSP+E L+  KP+Y+ L+VFGC+ YP LRP+N HKL+FRS    FLGY+  +K
Sbjct: 705  PTPVLKNKSPLEVLFHQKPSYSXLKVFGCMCYPNLRPFNHHKLQFRSIPCTFLGYSLNHK 764

Query: 266  GYKVLIPNGKIIITRHVTFDEGIFPYANSKNNPPTDSSTCTHVPSIP--TLVNTNTGPSH 93
            GYK L PNG I+I+R V FDE  FP+A  ++     SS  +   S+P  T +     PS 
Sbjct: 765  GYKCLSPNGNILISRDVIFDEXAFPFAQLQSQKQXTSSFSSSXTSLPCQTSLPLMVLPSS 824

Query: 92   TTRSNDCPSNTDPFLDISQTSPAAQ 18
            T+ S   P+N   F   S  + A+Q
Sbjct: 825  TSCSTSSPTNPSIFPATSNHNVASQ 849


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  436 bits (1121), Expect = e-139
 Identities = 226/498 (45%), Positives = 307/498 (61%), Gaps = 5/498 (1%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNHV+N   N++    + G + + +GNG G+     G +  HS  N    F L N
Sbjct: 15   PDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINPKFQFALNN 74

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFN--L 1155
            LL+VPSITKNLISVSQF KDN+V+FEF+P  CLVK + T  +LL+G V  DGLYKF   L
Sbjct: 75   LLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVGSDGLYKFPALL 134

Query: 1154 HNXXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNL 975
             N                        N A    +    WH R+ HP  D++    +N N+
Sbjct: 135  PNPSTQSVQQQQLARIFSV-------NTAATSPVSFATWHSRLGHPNVDVMKHVSRNYNI 187

Query: 974  PYVINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCS 795
              V N     C+ C L KSHR P   S  +YN P +L++SDLWGPAP+ S  GY+YYV  
Sbjct: 188  QLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTF 247

Query: 794  IDEFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENG 615
            +D  T+FTWIYLLK K++ F+ F QF  +++NQ +  IKA+QTDWGGEYR+ + +L E G
Sbjct: 248  VDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVG 307

Query: 614  INHRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKS 435
            I HR  C +T  QNG AERKHRHIVE GL+L+AQ+ +P++FW  +F+T+ YLINRLP+ S
Sbjct: 308  IQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSS 367

Query: 434  LTYKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKV 255
            +    P  KL+   P+Y +LR+FGC  +P+LRPYN HKL+FRS + VFLGY+  +KGYK 
Sbjct: 368  IQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKC 427

Query: 254  LIPNGKIIITRHVTFDEGIFPYANSKNNPPTDSSTCTHVP-SIPTLVNTNTGPSHTTR-S 81
            L  +G++ I++ V F+E  FPY   K+   +  ++ + +P S+P  +N    P+H TR +
Sbjct: 428  LAADGRLYISKDVVFNETKFPY---KDLFSSSKASDSQLPISVPLTINPTPTPTHATRLT 484

Query: 80   NDCPSNTDPFLDISQTSP 27
            +  P  T P L     SP
Sbjct: 485  SPNPPTTSPSLISDSYSP 502


>gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1085

 Score =  430 bits (1105), Expect = e-136
 Identities = 223/503 (44%), Positives = 302/503 (60%), Gaps = 2/503 (0%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNHV+N   N+     + G + + +GNG G+     G +  HS  N    F L N
Sbjct: 222  PDSGASNHVTNVSQNIQQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINPKFQFALNN 281

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFNLHN 1149
            LL+V SITKNLISVSQF KDN+V+FEF+P  CLVK + T+ +LL+G V  DGLY+F    
Sbjct: 282  LLFVLSITKNLISVSQFSKDNSVYFEFHPYICLVKSQDTKEVLLQGSVGPDGLYQF---- 337

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                                    N A    +    WH R+ HP  D++    +N N+  
Sbjct: 338  -PALLPTPSTQSVQQVQPARSFSVNTAAKSYVSFATWHSRLGHPNVDVMKHVSRNFNIQL 396

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            V N     C+ C L KSHR P   S  VYN P +L+++DLWGPAP+ S  GY+YYV  +D
Sbjct: 397  VTNNKSDFCTPCCLGKSHRLPSNLSKIVYNTPFDLVYNDLWGPAPVTSTCGYQYYVTFVD 456

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
              T+FTWIYLLK K++ F+ F QF  ++ NQ +  IKA+QTDWGGEYR+ + +L E GI 
Sbjct: 457  AHTRFTWIYLLKNKAQTFNVFKQFHAMVNNQYHHPIKALQTDWGGEYRSFTNYLNEVGIQ 516

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR  C +T  QNG  ERKHRHIVE GL+LLAQ+ +P++FW  AF+T  YLINRLP+ S+ 
Sbjct: 517  HRLICRHTHHQNGVVERKHRHIVELGLTLLAQAELPMQFWDHAFLTGVYLINRLPSSSIQ 576

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
               P  KL+   P+Y +LR+FGC  +P+LRPYN HKL+FRS + VFLGY+  +KGYK L 
Sbjct: 577  NVVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLA 636

Query: 248  PNGKIIITRHVTFDEGIFPYANSKNNPPTDSSTCTHVPSIPTLVNTNTGPSHTTR-SNDC 72
             + ++ I+  V F+E  FPY    ++  + +S   H  S+P  +N    PSH TR ++  
Sbjct: 637  ADERLYISNDVVFNETKFPYKELFSS--STASVSHHPISVPLTINPTPTPSHETRPTSPN 694

Query: 71   PSNTDPFLDISQTSPAAQSSSHH 3
            P  T P L     +P A ++ ++
Sbjct: 695  PLATSPSLTSDSYTPGAAATEYN 717


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  436 bits (1121), Expect = e-136
 Identities = 226/498 (45%), Positives = 307/498 (61%), Gaps = 5/498 (1%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNHV+N   N++    + G + + +GNG G+     G +  HS  N    F L N
Sbjct: 350  PDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINPKFQFALNN 409

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFN--L 1155
            LL+VPSITKNLISVSQF KDN+V+FEF+P  CLVK + T  +LL+G V  DGLYKF   L
Sbjct: 410  LLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVGSDGLYKFPALL 469

Query: 1154 HNXXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNL 975
             N                        N A    +    WH R+ HP  D++    +N N+
Sbjct: 470  PNPSTQSVQQQQLARIFSV-------NTAATSPVSFATWHSRLGHPNVDVMKHVSRNYNI 522

Query: 974  PYVINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCS 795
              V N     C+ C L KSHR P   S  +YN P +L++SDLWGPAP+ S  GY+YYV  
Sbjct: 523  QLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPVTSTCGYQYYVTF 582

Query: 794  IDEFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENG 615
            +D  T+FTWIYLLK K++ F+ F QF  +++NQ +  IKA+QTDWGGEYR+ + +L E G
Sbjct: 583  VDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYRSFTTYLNEVG 642

Query: 614  INHRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKS 435
            I HR  C +T  QNG AERKHRHIVE GL+L+AQ+ +P++FW  +F+T+ YLINRLP+ S
Sbjct: 643  IQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLINRLPSSS 702

Query: 434  LTYKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKV 255
            +    P  KL+   P+Y +LR+FGC  +P+LRPYN HKL+FRS + VFLGY+  +KGYK 
Sbjct: 703  IQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKC 762

Query: 254  LIPNGKIIITRHVTFDEGIFPYANSKNNPPTDSSTCTHVP-SIPTLVNTNTGPSHTTR-S 81
            L  +G++ I++ V F+E  FPY   K+   +  ++ + +P S+P  +N    P+H TR +
Sbjct: 763  LAADGRLYISKDVVFNETKFPY---KDLFSSSKASDSQLPISVPLTINPTPTPTHATRLT 819

Query: 80   NDCPSNTDPFLDISQTSP 27
            +  P  T P L     SP
Sbjct: 820  SPNPPTTSPSLISDSYSP 837


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  432 bits (1112), Expect = e-135
 Identities = 230/503 (45%), Positives = 308/503 (61%), Gaps = 5/503 (0%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGA+NH+++D+ NL +  +Y G + + MGNG  I   H G S+ H T  +S+ F LK 
Sbjct: 332  PDSGATNHLTSDLNNLGSKTDYTGQDKIHMGNGQAIGINHTGTSFFH-TPMSSKIFTLKE 390

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIVKDGLYKFNLHNX 1146
            LL+VP ITKNL+SVS+FCKDNNV+ EF+  +CLVK + ++  LL+G +K+GLY F+    
Sbjct: 391  LLHVPHITKNLLSVSKFCKDNNVYVEFHTNYCLVKSQDSKETLLRGNLKNGLYVFDEVQI 450

Query: 1145 XXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPYV 966
                                 V            +WH R+ H +  IV   +K CN+P  
Sbjct: 451  LKPDVYEHTVDSVPTNRTTLYVQRTRKSY----DVWHNRLAHASRKIVQAVMKTCNVPMP 506

Query: 965  INKNQGL-CSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            IN    + C SC + KSH  PF  S  VYN PLEL++SD+WGP+   SR G++YYV   D
Sbjct: 507  INHQDSIVCKSCCIGKSHTLPFSDSYTVYNSPLELVYSDVWGPSHYASREGFRYYVHFTD 566

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
             F+K+TWIY +  KSE  H FI FK+++ENQ   KIK  Q+D G E+  L+K   ENGI 
Sbjct: 567  AFSKYTWIYFMHNKSETAHHFIHFKSMVENQFGHKIKMFQSDGGKEFTCLTKLFNENGIT 626

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR SC ++ QQNGTAERKHRHI E GL+LL+ S +P  FW DAF T+ ++INRLPT  L 
Sbjct: 627  HRLSCPHSHQQNGTAERKHRHITEVGLTLLSSSGLPHIFWSDAFSTAIHVINRLPTPILG 686

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
            +KSP E L+   P+Y  LR FGC  YP+LRP+N+HK++FRS++ VF+GY+ Q+KGYK   
Sbjct: 687  HKSPYEVLFNKIPDYLLLRPFGCACYPHLRPFNSHKMDFRSSQCVFIGYSMQHKGYKCFT 746

Query: 248  PNGKIIITRHVTFDEGIFP---YANSKNNPPTDSSTCTH-VPSIPTLVNTNTGPSHTTRS 81
             NGKIII+R+V FDE  FP   Y N+ N     SS     VPSI  L + +  P+  T +
Sbjct: 747  TNGKIIISRNVVFDEDTFPGPSYFNTNNVAGLSSSHSPQPVPSIHVLPSQSLAPNSAT-T 805

Query: 80   NDCPSNTDPFLDISQTSPAAQSS 12
                S+ D  L  SQ +    +S
Sbjct: 806  VPLVSSIDESLQDSQLTSTTDTS 828


>gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 682

 Score =  408 bits (1048), Expect = e-132
 Identities = 222/509 (43%), Positives = 297/509 (58%), Gaps = 11/509 (2%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNH+                    +GNG G+     G ++  S      S  L N
Sbjct: 13   PDSGASNHI-------------------VIGNGQGLPINSSGVTHFSSPLKPHVSLTLHN 53

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFNLHN 1149
            LLYVP+ITKNLISVSQFCKDN+VFFEF+  FCLVK + +   LL G+V  DGLY+F    
Sbjct: 54   LLYVPTITKNLISVSQFCKDNSVFFEFHSTFCLVKSQDSNETLLLGVVGPDGLYQF---- 109

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                               +P  + V+    +    WH R+ H  +D++    K CN P 
Sbjct: 110  -------PSLLLPRHPSAVLPSAHTVS-SNSVSYATWHSRLGHAHNDVIKSVFKLCNFPI 161

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            +       C+SC L KSH+ P   S  VY+ P ELI+SDLWGPAP+ S NGY+YYV  +D
Sbjct: 162  INKSVSDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDLWGPAPVLSDNGYQYYVTLVD 221

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
              T+FTWI+LLK K+     F QF  +++NQ    IKA+QTDWGGE+R+ + +LA++GI+
Sbjct: 222  AHTRFTWIFLLKSKAHTLDVFKQFHAMVQNQFQLPIKAIQTDWGGEFRSFTSYLAQHGIH 281

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR  C +T  QNG  E KHRHIVE GL+LLAQ+ + + FW  AF+TS YLINRLP+ S+ 
Sbjct: 282  HRIICPHTHHQNGVVECKHRHIVELGLTLLAQAQLSMSFWDYAFLTSVYLINRLPSSSIQ 341

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
               P +KL+   P+Y  LRVFGC  +P+L PYN  KL+FRS + VFLGY+  +KGYK L 
Sbjct: 342  QDVPFQKLFHQLPDYNFLRVFGCSCFPHLWPYNKTKLQFRSQECVFLGYSTSHKGYKCLA 401

Query: 248  PNGKIIITRHVTFDEGIFPYANS-KNNPPTDSSTCTHVPSI---PTLVNTNTGPS----- 96
            P+G+I I++ V F E  FPY +    + P+ SS+   VP +   P    T+T PS     
Sbjct: 402  PSGRIFISKDVIFCENHFPYPSMFPPSTPSSSSSPIFVPLVITNPQAPVTSTSPSPPSPP 461

Query: 95   -HTTRSNDCPSNTDPFLDISQTSPAAQSS 12
              T  S+  PS+T P     + SP++ +S
Sbjct: 462  ISTDSSSSRPSHTSP-----RPSPSSSNS 485


>gb|KYP68414.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 603

 Score =  402 bits (1032), Expect = e-131
 Identities = 201/425 (47%), Positives = 265/425 (62%), Gaps = 1/425 (0%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNHV+N   N+     + G + + +GNG G+     G +  HS  N    F L N
Sbjct: 15   PDSGASNHVTNVSQNIQQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINPKFQFALNN 74

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFNLHN 1149
            LL+V SITKNLISVSQF KDN+V+FEF+P  CLVK + T+ +LL+G V  DGLY+F    
Sbjct: 75   LLFVLSITKNLISVSQFSKDNSVYFEFHPYICLVKSQDTKEVLLQGSVGPDGLYQF---- 130

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                                    N A    +    WH R+ HP  D++    +N N+  
Sbjct: 131  -PALLPTPSTQSVQQVQPARSFSVNTAAKSYVSFATWHSRLGHPNVDVMKHVSRNFNIQL 189

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            V N     C+ C L KSHR P   S  VYN P +L+++DLWGPAP+ S  GY+YYV  +D
Sbjct: 190  VTNNKSDFCTPCCLGKSHRLPSNLSKIVYNTPFDLVYNDLWGPAPVTSTCGYQYYVTFVD 249

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
              T+FTWIYLLK K++ F+ F QF  ++ NQ +  IKA+QTDWGGEYR+ + +L E GI 
Sbjct: 250  AHTRFTWIYLLKNKAQTFNVFKQFHAMVNNQYHHPIKALQTDWGGEYRSFTNYLNEVGIQ 309

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR  C +T  QNG  ERKHRHIVE GL+LLAQ+ +P++FW  AF+T  YLINRLP+ S+ 
Sbjct: 310  HRLICRHTHHQNGVVERKHRHIVELGLTLLAQAELPMQFWDHAFLTGVYLINRLPSSSIQ 369

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
               P  KL+   P+Y +LR+FGC  +P+LRPYN HKL+FRS + VFLGY+  +KGYK L 
Sbjct: 370  NVVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTSHKGYKCLA 429

Query: 248  PNGKI 234
             +G++
Sbjct: 430  ADGRL 434


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  421 bits (1081), Expect = e-130
 Identities = 221/486 (45%), Positives = 301/486 (61%), Gaps = 12/486 (2%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNHV+ +  NL  + E+ G N + +GNG G+S  H G S   S  + S+  +L +
Sbjct: 371  PDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGTGLSIKHIGQSEFLSPFS-SKPLLLNH 429

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIVKDGLYKFNL-HN 1149
            LL+VPSITKNL+SVS+F KDN VFFEF+   C VKD+ TQ +L+ G V+DGLY F+  H 
Sbjct: 430  LLHVPSITKNLLSVSKFAKDNKVFFEFHSDSCFVKDQVTQAVLMVGKVRDGLYAFDSSHL 489

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                                  V   +L    +  LWH+R+ HP+   +   L  CN+ +
Sbjct: 490  ALRPTQSLSKSPSVVASSFSSKVCTTSLSSTFD--LWHKRLGHPSAATIKNVLSKCNVAH 547

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            +   +   CSSC L K HR PF  S+  Y  PLELIH DLWGP  + S +GY+YY+  +D
Sbjct: 548  INKMDSNFCSSCCLGKIHRFPFSLSHTTYTKPLELIHLDLWGPTLVLSNSGYRYYIHFVD 607

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
             F++F+WI+LL+ KSE    F+ FKT +E Q + KIK++QTDWGGE+R    +LAENGI 
Sbjct: 608  AFSRFSWIFLLRNKSEAIKTFVNFKTQVELQFDLKIKSLQTDWGGEFRAFQSYLAENGIV 667

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR SC +T QQNG AERKHR IVE GL+LL  + +PL+FW ++F T  YL NRLPT  L 
Sbjct: 668  HRVSCPHTQQQNGVAERKHRTIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILH 727

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
            +K PIE L+   P+Y+ L+VFGC  +P LRPYNTHKL++RS +  FLGY+ ++KGYK + 
Sbjct: 728  HKCPIEVLFKSIPDYSFLKVFGCSCFPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMS 787

Query: 248  PNGKIIITRHVTFDEGIFPYAN---------SKNNPPTDSSTCTHVPSI--PTLVNTNTG 102
             NG++ I+  V F+E  FPY+          S  +P T   + +  P +  PT++ T T 
Sbjct: 788  SNGRVYISHDVIFNETSFPYSKTIQVSSCLLSTVSPSTSHLSPSASPPVLSPTMLPTPTS 847

Query: 101  PSHTTR 84
            P  + R
Sbjct: 848  PISSAR 853


>gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 661

 Score =  401 bits (1031), Expect = e-130
 Identities = 214/480 (44%), Positives = 288/480 (60%), Gaps = 11/480 (2%)
 Frame = -1

Query: 1418 MGNGAGISFTHFGNSYLHSTHNTSRSFILKNLLYVPSITKNLISVSQFCKDNNVFFEFYP 1239
            +GNG G+     G ++  S      S  L NLLYVP+ITKNLISVSQFCKDN+VFFEF+ 
Sbjct: 2    IGNGQGLPINSSGVTHFSSPLKPHVSLTLHNLLYVPTITKNLISVSQFCKDNSVFFEFHS 61

Query: 1238 LFCLVKDR*TQVILLKGIV-KDGLYKFNLHNXXXXXXXXXXXXXXXXXHCIPVVNNVALG 1062
             FCLVK + +   LL G+V  DGLY+F                       +P  + V+  
Sbjct: 62   TFCLVKSQDSNETLLLGVVGPDGLYQF-----------PSLLLPRHPSAVLPSAHTVS-S 109

Query: 1061 KGLE*QLWHQRMEHPAHDIVIKALKNCNLPYVINKNQGLCSSCLLAKSHRTPFLPSNHVY 882
              +    WH R+ H  +D++    K CN P +       C+SC L KSH+ P   S  VY
Sbjct: 110  NSVSYATWHSRLGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLPSQLSKTVY 169

Query: 881  NFPLELIHSDLWGPAPIQSRNGYKYYVCSIDEFTKFTWIYLLKQKSEVFHAFIQFKTLIE 702
            + P ELI+SDLWGPAP+ S NGY+YYV  +D  T+FTWI+LLK K+     F QF  +++
Sbjct: 170  HTPFELIYSDLWGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVFKQFHAMVQ 229

Query: 701  NQLNFKIKAVQTDWGGEYRNLSKFLAENGINHRFSCAYTPQQNGTAERKHRHIVEAGLSL 522
            NQ    IKA+QTDWGGE+R+ + +LA++GI+HR  C +T  QNG  E KHRHIVE GL+L
Sbjct: 230  NQFQLPIKAIQTDWGGEFRSFTSYLAQHGIHHRIICPHTHHQNGVVECKHRHIVELGLTL 289

Query: 521  LAQSHVPLEFWGDAFITSTYLINRLPTKSLTYKSPIEKLYGHKPNYTALRVFGCLRYPYL 342
            LAQ+ + + FW  AF+TS YLINRLP+ S+    P +KL+   P+Y  LRVFGC  +P+L
Sbjct: 290  LAQAQLSMSFWDYAFLTSVYLINRLPSSSIQQDVPFQKLFHQLPDYNFLRVFGCSCFPHL 349

Query: 341  RPYNTHKLEFRSTKGVFLGYNNQYKGYKVLIPNGKIIITRHVTFDEGIFPYANS-KNNPP 165
             PYN  KL+FRS + VFLGY+  +KGYK L P+G+I I++ V F E  FPY +    + P
Sbjct: 350  WPYNKTKLQFRSQECVFLGYSTSHKGYKCLAPSGRIFISKDVIFCENHFPYPSMFPPSTP 409

Query: 164  TDSSTCTHVPSI---PTLVNTNTGPS------HTTRSNDCPSNTDPFLDISQTSPAAQSS 12
            + SS+   VP +   P    T+T PS       T  S+  PS+T P     + SP++ +S
Sbjct: 410  SSSSSPIFVPLVITNPQAPVTSTSPSPPSPPISTDSSSSRPSHTSP-----RPSPSSSNS 464


>gb|KYP63768.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 678

 Score =  399 bits (1025), Expect = e-129
 Identities = 218/488 (44%), Positives = 296/488 (60%), Gaps = 13/488 (2%)
 Frame = -1

Query: 1502 DSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKNL 1323
            D+G +NHV+ D TNL     Y+G   + M NG   S    G S+  + ++ S  F+ K L
Sbjct: 167  DTGVTNHVTLDSTNLQGKVPYNGNTKMKMANGETSSIKSIGTSFFFTPNSISPLFLNK-L 225

Query: 1322 LYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIVKDGLYKFN---LH 1152
            L+VP+ITKNL+SVSQF +DNNVFFEF+P  C +K + T+ +LL+  ++ GLY F+   L 
Sbjct: 226  LHVPTITKNLLSVSQFARDNNVFFEFFPDKCCIKSQATRKLLLESKLRHGLYAFDDISLI 285

Query: 1151 NXXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*-QLWHQRMEHPAHDIVIKALKNCNL 975
                                I V N+      L   +LW  R+ H  + I+   L N N+
Sbjct: 286  TSPCTFVPTNVASCNSISSSISVANSTNGSTQLSLYKLWQSRLGHANYKIIQHVLHNSNI 345

Query: 974  PYVINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCS 795
                N    +C SC   KSH  PF  S   YN PL+L+ SD+WGP P+ S NG +YY+  
Sbjct: 346  YVPRNYTFNVCKSCCYGKSHNMPFYSSKTAYNKPLQLVFSDIWGPVPVPSSNGSRYYIHF 405

Query: 794  IDEFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENG 615
            +D ++K+TWIYL++ KS+    F+ FK +I+NQL+ KIK +QTD G +Y   S FL E+G
Sbjct: 406  LDAYSKYTWIYLIQFKSQALAYFMHFKKMIDNQLDMKIKCLQTDGGKKYTIFSSFLNEHG 465

Query: 614  INHRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKS 435
            I HR SC YT +QNGT ERKHRHIVE GLS+LA + +PL+FWG+AF    ++IN+LPT +
Sbjct: 466  IIHRLSCLYTHEQNGTIERKHRHIVEVGLSMLANASMPLKFWGEAFSFVVHIINQLPTPT 525

Query: 434  LTYKSPIEKLYGHK--PNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGY 261
            L+Y + +E  +  K  P+Y  LR+FGC  YP +RPYN +KLEFRS + VFLGY + YKGY
Sbjct: 526  LSYSALMETFFFSKKNPDYHHLRIFGCACYPNMRPYNKNKLEFRSQECVFLGYTSNYKGY 585

Query: 260  KVLIPNGKIIITRHVTFDEGIFPYA-NSKNNPPTDS----STCTHVPSIPTLV--NTNTG 102
              L   GK+ I+RHV FDE +FP+A N K     DS    ST T +P IP  +  NT T 
Sbjct: 586  LCLSKTGKVFISRHVIFDEDLFPFAVNPKFLEENDSAAAVSTPTPLPCIPIYIQPNTPTI 645

Query: 101  PSHTTRSN 78
            PS+   +N
Sbjct: 646  PSNLEHNN 653


>gb|KYP65286.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 904

 Score =  402 bits (1034), Expect = e-128
 Identities = 225/520 (43%), Positives = 306/520 (58%), Gaps = 20/520 (3%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGAS+H + D   L  + ++ G   + M NG G S    G++   S  + S    LK+
Sbjct: 310  PDSGASHHATLDPQYLLQSAQFTGAEHIAMANGQGTSIASIGSNMFRSPMHPSTILSLKD 369

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKG-IVKDGLYKFNLHN 1149
            LL VP++TKNLISVS+F KDNNV+F FYP  C VK +     LL+G + +D LY F+ H 
Sbjct: 370  LLLVPTLTKNLISVSKFAKDNNVYFVFYPHSCFVKSQDLNETLLEGKLGEDDLYHFHPHL 429

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVV------NNVALGKGLE*QLWHQRMEHPAHDIVIKALK 987
                                P +      N+V      +   WH R+ HP HD + KAL+
Sbjct: 430  AKKTSFNIDIEQNLAFPKSDPCIFLSEKCNHVVSNTYKQ---WHLRLGHPHHDSLTKALQ 486

Query: 986  NCNLPY-VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYK 810
             CN+    +NK    C SC +AKSHR P  PS  +Y+ PLEL+  D+WGPA ++S  GY 
Sbjct: 487  TCNIRLPTVNKISDFCDSCCIAKSHRLPSQPSTTIYSKPLELVFLDVWGPASLESSCGYL 546

Query: 809  YYVCSIDEFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKF 630
            Y++  +D  TK+ WIYLL++KS+V   F  FK L E Q    +K+VQTD GGE+R L  F
Sbjct: 547  YFLTCVDACTKYVWIYLLRRKSDVSSNFQNFKDLAEKQFQTPLKSVQTDGGGEFRTLIPF 606

Query: 629  LAENGINHRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINR 450
              + GI HR +C YT  QNGT ER+HRHIVE GL++L  S +PL FW  AF+T+T LINR
Sbjct: 607  FQQEGILHRLTCPYTHYQNGTVERRHRHIVEFGLAMLHHSALPLNFWDHAFLTATCLINR 666

Query: 449  LPTKSLTYKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQY 270
            LP+ S+ ++SP + ++   P+Y  L+VFGC  +P LRPYN HK++ RS + VFLGY+  +
Sbjct: 667  LPSSSVGFQSPYKLIHNKDPDYAFLKVFGCSCFPLLRPYNQHKIQPRSEECVFLGYSPSH 726

Query: 269  KGYKVLIPNGKIIITRHVTFDEGIFPY------ANSKNNPPTD-----SSTCTHVPSIPT 123
            KGYK L  +G+I I++ V F+EG FPY          + P T      S  C+H PS  T
Sbjct: 727  KGYKCLSRSGRIYISKDVIFNEGRFPYNDLFVTTTQASIPATSVSILPSLVCSHNPSSST 786

Query: 122  LVN-TNTGPSHTTRSNDCPSNTDPFLDISQTSPAAQSSSH 6
            L++   T  S ++ SN  PS+T   ++ S TSP A SSSH
Sbjct: 787  LISPAITASSGSSESNLLPSSTP--VNSSTTSPTASSSSH 824


>gb|KYP68420.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 653

 Score =  395 bits (1014), Expect = e-128
 Identities = 201/439 (45%), Positives = 270/439 (61%), Gaps = 1/439 (0%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGASNHV+N   N+     + G + + +GNG G+     G +  HS  N    F L N
Sbjct: 222  PDSGASNHVTNVSQNIQQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINPKFQFALNN 281

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFNLHN 1149
            LL+VPSITKNLISVSQF KDN+V+FEF+P  CLVK + T+ +LL+G V  DGLY+F    
Sbjct: 282  LLFVPSITKNLISVSQFSKDNSVYFEFHPYICLVKSQDTKEVLLQGSVGPDGLYQF---- 337

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                                    N      +    WH R+ HP  D++    +N N+  
Sbjct: 338  -PALLPTPSTQSVQQVQPARSFSVNTTAKSYVSFATWHSRLGHPNVDVMKHVSRNFNIQL 396

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            V N     C+ C L KSHR P   S  VYN P +L++SDL GPAP+ S  GY+YYV  +D
Sbjct: 397  VTNNKSDFCTPCCLGKSHRLPSNLSKTVYNTPFDLVYSDLCGPAPVTSTCGYQYYVTFVD 456

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
              T+FT  YLLK K++ F+ F QF  +++NQ +  IKA+QTDWGGEYR+ + +L E GI 
Sbjct: 457  AHTRFT--YLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYRSFTNYLNEVGIQ 514

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR  C +T  +NG  ERKHRHI+E GL+LLAQ+ +P++FW  AF+T  YLINRLP+ S+ 
Sbjct: 515  HRLICPHTHHRNGVVERKHRHIIELGLTLLAQAELPMQFWDHAFLTGVYLINRLPSSSIQ 574

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
               P  KL+   P+Y +LR+FGC  +P+LRPYN HKL+FRS + VF+GY+  +KGYK L 
Sbjct: 575  NAIPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFVGYSTSHKGYKCLA 634

Query: 248  PNGKIIITRHVTFDEGIFP 192
             + ++ I+  V F+E  FP
Sbjct: 635  ADERLYISNDVVFNETKFP 653


>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  410 bits (1054), Expect = e-126
 Identities = 233/522 (44%), Positives = 311/522 (59%), Gaps = 23/522 (4%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGAS+H + D   L  + ++ G   + M NG G S T  G++   S  + S    LK+
Sbjct: 343  PDSGASHHATPDPQYLLQSAQFTGAEHIAMANGQGTSITSVGSNMFRSPMHPSTILSLKD 402

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKG-IVKDGLYKFNLHN 1149
            LL VPS+TKNLISVS+F KDNNV+F F+P  C VK +     LL+G + +DGLY F+ H 
Sbjct: 403  LLLVPSLTKNLISVSKFAKDNNVYFVFHPHSCFVKSQDLNETLLEGHLGEDGLYHFHPHL 462

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVV------NNVALGKGLE*QLWHQRMEHPAHDIVIKALK 987
                                P +      N+V      +   WH R+ HP HD + +AL+
Sbjct: 463  ATKTSSNTNIEQNLIFSKPDPCIFLSEKCNSVVPNTYKQ---WHLRLGHPHHDSLTRALQ 519

Query: 986  NCNLPY-VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYK 810
             CN+    +NK    C SC +AKSHR P  PS  +Y+ PLEL+  D+WGPA ++S  GY 
Sbjct: 520  TCNIRLPTVNKISDFCDSCCIAKSHRLPSHPSTTIYSKPLELVFLDVWGPASLESSCGYL 579

Query: 809  YYVCSIDEFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKF 630
            Y++  +D  TK+ WIYLL++KS+VF  F  FK L E Q    +K+VQTD GGE+R L  F
Sbjct: 580  YFLTCVDACTKYVWIYLLRRKSDVFSNFQNFKALAEKQFQLPLKSVQTDGGGEFRALISF 639

Query: 629  LAENGINHRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINR 450
              + GI HR +C YT  QNGT ER+HRHIVE GL++L  S +PL FW  AF+T+TYLINR
Sbjct: 640  FQQEGILHRLTCPYTHHQNGTVERRHRHIVELGLAMLHHSTLPLNFWDHAFLTATYLINR 699

Query: 449  LPTKSLTYKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQY 270
            LP+ S+ ++SP + ++   P+YT L+VFGC  +P LRPYN HKL+ RS + VFLGY+  +
Sbjct: 700  LPSSSVGFQSPYKLIHHKDPDYTFLKVFGCSCFPLLRPYNQHKLQPRSEECVFLGYSPLH 759

Query: 269  KGYKVLIPNGKIIITRHVTFDEGIFPY------ANSKNNPPTDSST-----CTHVPSIPT 123
            KGYK L  +G+I I++ V F+EG FPY      A S + P T  ST     C+H PS  T
Sbjct: 760  KGYKCLSKSGRIYISKDVIFNEGRFPYHDLFVTATSDSIPATSVSTLPSLVCSHNPSSST 819

Query: 122  LVN----TNTGPSHTTRSNDCPSNTDPFLDISQTSPAAQSSS 9
            LV+    TN+G S +  S   PS  D   + S  SP A SSS
Sbjct: 820  LVSPTVPTNSGSSESNFS--LPSMPD---NSSTNSPPASSSS 856


>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1268

 Score =  407 bits (1046), Expect = e-126
 Identities = 223/495 (45%), Positives = 299/495 (60%), Gaps = 3/495 (0%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PDSGAS HV+ +  N++    + G + +F+GNG G+     G S   S   ++  F L +
Sbjct: 269  PDSGASFHVTGEPQNVHQLGHFDGPDQIFIGNGQGLHINGSGFSSFLSPIKSNFCFKLND 328

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFNLHN 1149
            LL+VPSITKNL+SVS+F KDN+V+FEF+   C VK + T  ILL+G+V  DGLY F+   
Sbjct: 329  LLHVPSITKNLLSVSKFAKDNSVYFEFHSHCCFVKSQVTNEILLQGVVGSDGLYSFS--- 385

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                                P V+  A+        WH R+ HP   ++   L +CN+  
Sbjct: 386  NLELQGPSVLVSSSMASSVDPAVSAFAIPSSHT--SWHTRLSHPNSHVLKLVLNHCNIAP 443

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
                    CSSC + KSHR P L S  VY+ PL+LI +DLWGP+ + S +GY YYV  ID
Sbjct: 444  SNRNVSEFCSSCCVGKSHRLPSLVSESVYSAPLDLIFTDLWGPSHVVSHSGYVYYVSFID 503

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
             F+KFTWIY LK KS+    F QFK ++E QLN KIK++Q+DWGGEYR+ + FLA +GI 
Sbjct: 504  AFSKFTWIYPLKSKSDTLSVFQQFKAMVELQLNTKIKSIQSDWGGEYRSFTAFLATHGIT 563

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            HR  C +T  QNG  ERKHRHIV+ G++LL  + +PL FW  AF T+ YLINRLPT SL 
Sbjct: 564  HRLICPHTHHQNGVVERKHRHIVDIGITLLHHASLPLTFWDYAFSTAVYLINRLPTASLN 623

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
            +  P   L+   P+Y  L+ FGC  +P+LRPY THKL+FRS + VFLGY+N +KGYK L 
Sbjct: 624  FDIPFTVLFKQTPDYKFLKTFGCACFPFLRPYTTHKLDFRSQECVFLGYSNSHKGYKCLS 683

Query: 248  PNGKIIITRHVTFDEGIFPYANSKNNPPTDSSTCTHVPSIPTLVNTNTGP--SHTTRSND 75
             +GKI I++ V F+E  FPY +   +    +ST    PS    +N +  P  SHTT S  
Sbjct: 684  ASGKIYISKDVIFNETRFPYLDLFQH----TSTPVPSPSQYFTLNPDLSPPCSHTTAS-- 737

Query: 74   CPSNTDPFLDISQTS 30
                + PF+ +S+TS
Sbjct: 738  ----SLPFIPVSETS 748


>gb|KYP52268.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 828

 Score =  394 bits (1011), Expect = e-125
 Identities = 216/500 (43%), Positives = 290/500 (58%), Gaps = 1/500 (0%)
 Frame = -1

Query: 1505 PDSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKN 1326
            PD GASNHV+N   N+     + G + + +GNG G+       ++  S      S  L N
Sbjct: 296  PDFGASNHVTNVSHNIQQFTPFEGSDQIVIGNGQGLPINSSSVTHFPSPLKPHISLTLHN 355

Query: 1325 LLYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIV-KDGLYKFNLHN 1149
            LLYVP+ITKNLISVSQFCKDN VFFEF+  FCLVK + T   LL  +V  DGLY+F    
Sbjct: 356  LLYVPTITKNLISVSQFCKDNFVFFEFHSTFCLVKSQDTNETLLFEVVGPDGLYQF---- 411

Query: 1148 XXXXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPY 969
                                P  + V+    +    WH R+ HP +D++    K CN P 
Sbjct: 412  -------PSLLLPRQPSTVTPSAHTVS-SNPVSYATWHSRLRHPHNDVLKYVFKLCNFPI 463

Query: 968  VINKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            +       C+SC L KSH+ P   S  VY+ P ELI+SDLWG AP  S NGY+YYV  +D
Sbjct: 464  INKSVFDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDLWGLAPFLSDNGYQYYVTFVD 523

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
              T+FTWI+LLK K+     F QF  +++NQ    +K +Q DWGG++R+ + +LA++GI+
Sbjct: 524  AHTRFTWIFLLKSKAHTLDVFKQFHAMVQNQFQLPVKEIQIDWGGKFRSFTSYLAQHGIH 583

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            H   C  T  QNG  E KHRHIVE GL+LLAQ+H P+ FW  AF+TS YLINRLP+ S+ 
Sbjct: 584  HCLICPNTHHQNGVVECKHRHIVELGLTLLAQAHFPMHFWDYAFLTSVYLINRLPSSSIQ 643

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLI 249
               P  KL+   P+Y+ L +FGC  +P LRPYN  KL+FRS + VFLGY+  +KGYK L 
Sbjct: 644  QDVPFRKLFHQLPDYSFLCIFGCSCFPCLRPYNKTKLQFRSQECVFLGYSTSHKGYKCLA 703

Query: 248  PNGKIIITRHVTFDEGIFPYANSKNNPPTDSSTCTHVPSIPTLVNTNTGPSHTTRSNDCP 69
             +G+  I++ V F E  FPY +    PP+  S+      +P LV TN   S T+ S   P
Sbjct: 704  SSGRTFISKDVIFCESCFPYPSL--FPPSTPSSPPSSIFVP-LVITNPQASVTSTS---P 757

Query: 68   SNTDPFLDISQTSPAAQSSS 9
            S   P +  + ++P+  SS+
Sbjct: 758  SPPLPPISPASSTPSPSSST 777


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  400 bits (1027), Expect = e-124
 Identities = 219/494 (44%), Positives = 303/494 (61%), Gaps = 8/494 (1%)
 Frame = -1

Query: 1502 DSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKNL 1323
            D+GA++H++N++  L T   Y+G   +   +G+G+   H G S + +    +R+  L+N+
Sbjct: 318  DTGATDHITNELEKLTTRDRYNGKEQIHTASGSGMDIKHIGQSTIRTP---TRNLYLRNI 374

Query: 1322 LYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIVKDGLYKFNLHNXX 1143
            L+VP   KNLIS  +   DN+ F E +P F  +KD+ T+  LL+G   +GLY        
Sbjct: 375  LHVPRTKKNLISAHRLAVDNHAFVEVHPRFFAIKDQITKNTLLRGPCCNGLYPLPASTSS 434

Query: 1142 XXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPYV- 966
                              P V+           +WH R+ HP+  IV K + + NLP + 
Sbjct: 435  SKQVLGAIK---------PTVS-----------IWHSRLGHPSWQIVQKVVSHNNLPCLG 474

Query: 965  INKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSIDE 786
             +K  G+C +C   KSH+ PFL S    NFPLEL+ SD+WGPAP  S  G KYYV  ID+
Sbjct: 475  ESKELGVCDACQKGKSHQLPFLKSTSASNFPLELVFSDVWGPAP-DSVGGRKYYVSFIDD 533

Query: 785  FTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGINH 606
            F+KFTWIYLLKQKSEVFH F +F+ L+E     KI A+QTDWGGEY  L  F  + GI+H
Sbjct: 534  FSKFTWIYLLKQKSEVFHKFHEFQQLVERIFYRKIIAMQTDWGGEYEKLHDFFTKIGISH 593

Query: 605  RFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLTY 426
              SC +T QQNG+AERKHRHIVE GLSLLA + +PL+FW +AFI +TYLINR P+K + Y
Sbjct: 594  HVSCPHTHQQNGSAERKHRHIVEVGLSLLAHASMPLKFWDEAFIAATYLINRTPSKVIQY 653

Query: 425  KSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVL-I 249
            ++P+E L+  KP+YT+LRVFGC  +P LRPYN  KL+FRS + VFLGY+N +KG+K L +
Sbjct: 654  ETPLEHLFHQKPSYTSLRVFGCACWPNLRPYNARKLQFRSKQCVFLGYSNLHKGFKCLDV 713

Query: 248  PNGKIIITRHVTFDEGIFPYANSKNNPPTD-SSTCTHVPSIPTLVN--TNTGPSHTTRSN 78
              G++ I+R V FDE +FP+A+  +N      S    +P  PTL+N   +TG   T   +
Sbjct: 714  AAGRVYISRDVVFDENVFPFASLHSNAGARLRSEILLLP--PTLLNPDDSTGRGTTIGDD 771

Query: 77   ---DCPSNTDPFLD 45
               D P +T+ F +
Sbjct: 772  HMLDNPEHTNTFAE 785


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1165

 Score =  398 bits (1022), Expect = e-124
 Identities = 209/486 (43%), Positives = 294/486 (60%), Gaps = 5/486 (1%)
 Frame = -1

Query: 1502 DSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKNL 1323
            DSGASNHV+ D   +    E  G + L +GNGA +     G+S L +     +S  LK++
Sbjct: 236  DSGASNHVTYDQNKVQEVNENDGKSFLTVGNGANLKIIACGDSSLDTQQ---KSLNLKDI 292

Query: 1322 LYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIVKDGLYKFNLHNXX 1143
            LYVP ITKNL+S+S+   DN+++ EF+ + C VKD+ T  ILL+G +KDGLY+    +  
Sbjct: 293  LYVPKITKNLLSISKLTFDNDIYVEFHDVACFVKDKLTGRILLEGKIKDGLYQLPGGSTS 352

Query: 1142 XXXXXXXXXXXXXXXHCIPVVNNVALGKGLE*QLWHQRMEHPAHDIVIKALKNCNLPYVI 963
                                            + WH+++ HP   ++ + +K CN+    
Sbjct: 353  TNKRPHVFFSIK--------------------ETWHRKLGHPNSKVLNEVMKLCNIEASP 392

Query: 962  NKNQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSIDEF 783
             +N   C +C   K+H  PF  S      PL+L+HSD+WGPAPI S +G+KYYV  +D++
Sbjct: 393  CENFEFCEACQFGKAHNLPFQNSVSCAKEPLDLVHSDVWGPAPISSVSGFKYYVLFLDDW 452

Query: 782  TKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGINHR 603
            ++FTWIY LKQKS+VF AFIQF+ L+ENQ N +IK +Q D GGE+++LSK L + GI  R
Sbjct: 453  SRFTWIYPLKQKSDVFQAFIQFRNLVENQFNKRIKTLQCDGGGEFKSLSKVLIKTGIQLR 512

Query: 602  FSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLTYK 423
             SC YT  QNG AERKHRH+VE+GL+LLAQ+ +PL +W +AF T+ +LINRLPT+ +  K
Sbjct: 513  ESCPYTSAQNGRAERKHRHVVESGLTLLAQAKMPLHYWWEAFSTAVFLINRLPTQVIKNK 572

Query: 422  SPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVLIPN 243
            SP ++L+   P+YTA++ FGC  YP L+PYN HKL+F +TK VFLGY+  +KGYK L   
Sbjct: 573  SPYQQLFDKNPDYTAMKTFGCACYPCLKPYNQHKLQFHTTKCVFLGYSGSHKGYKCLNST 632

Query: 242  GKIIITRHVTFDEGIFPYANSKNNPPTDSSTCTHVPSI-----PTLVNTNTGPSHTTRSN 78
            G+I I+RHV F+E  FP+ +   N    +   T   S+     PT  N          +N
Sbjct: 633  GRIFISRHVVFNEHHFPFHDGFLNTRKPAEIITDPTSLLFPISPTGSNVANEEQRLHTNN 692

Query: 77   DCPSNT 60
            +  SNT
Sbjct: 693  NSSSNT 698


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  402 bits (1034), Expect = e-123
 Identities = 213/506 (42%), Positives = 314/506 (62%), Gaps = 6/506 (1%)
 Frame = -1

Query: 1502 DSGASNHVSNDITNLNTAFEYHGGN*LFMGNGAGISFTHFGNSYLHSTHNTSRSFILKNL 1323
            D+GA++H++ ++  L T  +Y+GG  +   +GAG+  +H G++ +H+    SR+  L N+
Sbjct: 328  DTGATDHITGELEKLTTKEKYNGGEQIHTASGAGMDISHIGHTIVHTP---SRNIHLNNV 384

Query: 1322 LYVPSITKNLISVSQFCKDNNVFFEFYPLFCLVKDR*TQVILLKGIVKDGLYKFNLHNXX 1143
            LYVP   KNLIS SQ   DN+ F E +  F  +KD+ T+ +LL+G  + GLY        
Sbjct: 385  LYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPIPKSFGR 444

Query: 1142 XXXXXXXXXXXXXXXHCIPVVNNVALGKG-LE*QLWHQRMEHPAHDIVIKALKNCNLPYV 966
                                 N  ALG   L    WH R+ HP+  IV + +   NLP  
Sbjct: 445  S-------------------TNKQALGAAKLSLSRWHSRLGHPSLPIVKQVISRNNLPCS 485

Query: 965  INK-NQGLCSSCLLAKSHRTPFLPSNHVYNFPLELIHSDLWGPAPIQSRNGYKYYVCSID 789
            +   NQ +C++C  AKSH+ P++ S  V  FPLEL+ SD+WGPAP +S    KYYV  ID
Sbjct: 486  VESVNQSVCNACQEAKSHQLPYIRSTSVSQFPLELVFSDVWGPAP-ESVGRNKYYVSFID 544

Query: 788  EFTKFTWIYLLKQKSEVFHAFIQFKTLIENQLNFKIKAVQTDWGGEYRNLSKFLAENGIN 609
            +F+KFTWIYLLK KSEVF  F +F+ L+E   + KI A+QTDWGGEY+ L+ F A+ GI+
Sbjct: 545  DFSKFTWIYLLKYKSEVFEKFKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAQIGID 604

Query: 608  HRFSCAYTPQQNGTAERKHRHIVEAGLSLLAQSHVPLEFWGDAFITSTYLINRLPTKSLT 429
            H  SC +T QQNG+AERKH+HI+E GLSLL+ + +PL+FW +AF+ +TYLINR+P+K++ 
Sbjct: 605  HHVSCPHTHQQNGSAERKHKHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQ 664

Query: 428  YKSPIEKLYGHKPNYTALRVFGCLRYPYLRPYNTHKLEFRSTKGVFLGYNNQYKGYKVL- 252
              +P+EKL+  KP+Y++LRVF C  +P+L PYNTHKL+FRS + VFLG++  +KG+K L 
Sbjct: 665  NSTPLEKLFNQKPDYSSLRVFSCTCWPHLHPYNTHKLQFRSKQCVFLGFSTHHKGFKFLD 724

Query: 251  IPNGKIIITRHVTFDEGIFPYANSKNNPPTD-SSTCTHVPSIPTLVNT-NTGPSHTTRS- 81
            + +G++ I+R V FDE +FP++   +N      S    +PS  T  NT + G +H     
Sbjct: 725  VSSGRVYISRDVVFDENVFPFSTLHSNAGARLRSEILLLPSPLTNYNTVSAGGTHIVAPV 784

Query: 80   NDCPSNTDPFLDISQTSPAAQSSSHH 3
             + P  +D  +  +    + ++S+ H
Sbjct: 785  ANTPLPSDNLISNAADVTSGENSAAH 810