BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00048260
         (2001 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_013745520.1| PREDICTED: uncharacterized protein LOC106448...   820   0.0  
ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [The...   677   0.0  
ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [The...   701   0.0  
ref|XP_007045326.1| DNA/RNA polymerases superfamily protein [The...   679   0.0  
ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, part...   699   0.0  
ref|XP_007221749.1| hypothetical protein PRUPE_ppb022800mg, part...   672   0.0  
ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun...   695   0.0  
ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prun...   685   0.0  
gb|KYP77891.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]   660   0.0  
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   661   0.0  
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   685   0.0  
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         681   0.0  
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   679   0.0  
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  678   0.0  
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   675   0.0  
dbj|BAA89466.1| gag-pol polyprotein, partial [Oryza sativa Indic...   672   0.0  
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   672   0.0  
ref|XP_007206823.1| hypothetical protein PRUPE_ppa025991mg [Prun...   663   0.0  
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   672   0.0  
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  674   0.0  

>ref|XP_013745520.1| PREDICTED: uncharacterized protein LOC106448142 [Brassica napus]
          Length = 701

 Score =  820 bits (2118), Expect = 0.0
 Identities = 394/665 (59%), Positives = 483/665 (72%)
 Frame = +2

Query: 5    YAAPRKCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRR 184
            + A  KC F   +VLFLGYV+SA G+ +D  K+A +  WPTPTS+T +RSFHGLA+FYRR
Sbjct: 78   FIAAHKCEFGVSQVLFLGYVVSATGLRVDPQKVAAVASWPTPTSITEIRSFHGLAAFYRR 137

Query: 185  FIPHFSSIMAPITDCMRGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDAS 364
            F+ +FS+IMAP+TDCM+ TTF W+ AA  AF  IK KLTT+P+L+LPDF +PFELHCDAS
Sbjct: 138  FVHNFSAIMAPLTDCMKNTTFSWSLAASQAFELIKTKLTTAPILVLPDFDLPFELHCDAS 197

Query: 365  KVGIGAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTD 544
            K+GIGAVLSQ  RPVAY+SEK+ G R RYSTYDV+FYA+V+AV+HWRHYL  +EFVL+TD
Sbjct: 198  KLGIGAVLSQQGRPVAYYSEKMAGARARYSTYDVKFYAIVQAVKHWRHYLAHKEFVLFTD 257

Query: 545  HDSLKYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAII 724
            H +L+Y+ +Q  +S+RHASW A+LQQFTFV++H SG  N+VAD+LSRRH+L++ +RV+++
Sbjct: 258  HVALRYLGTQDKISSRHASWTAYLQQFTFVIKHPSGKLNKVADSLSRRHALVSTLRVSVV 317

Query: 725  GFDTFRSLYVTDHFFGKVLSSVHAGTTTDFTMSDGFLFRGTRLCIPDCSLRSKLISELHN 904
            GF+    LY TD F  +                                LR ++I ELH 
Sbjct: 318  GFECLAELYPTDAFSPR--------------------------------LRLQIIQELHK 345

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GHVGRDRTL LV   ++WPSLRRDV +FV RC  CQ  KG  SNAGLY PLP+P++PWS
Sbjct: 346  EGHVGRDRTLKLVADSYYWPSLRRDVERFVARCTTCQEGKGHVSNAGLYLPLPIPTQPWS 405

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCK+TTDA+ VA LFF EIYRLHGLP
Sbjct: 406  DISMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKKTTDAVQVASLFFWEIYRLHGLP 465

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             SIVSDRD+RF+SHFWRSLW+   T L+ SSAYHP TDGQTEVVNRSLGN+LRCLVGDN+
Sbjct: 466  TSIVSDRDSRFISHFWRSLWKLFKTSLNMSSAYHPHTDGQTEVVNRSLGNMLRCLVGDNL 525

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            ++WD  L QAEFAHN A N S G+ PF+VVYG++PR P+ L   P P    GRA + +  
Sbjct: 526  RSWDTLLCQAEFAHNHAHNWSLGYSPFKVVYGVVPRDPLALATTPQPGEFHGRAFELIEE 585

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            +  +HT    +L  +  +YK   D KRR V F VGD VWAVL K+R+P   Y KL  RKI
Sbjct: 586  ITDLHTRAQDNLAGTAIKYKREVDKKRREVNFQVGDHVWAVLIKERFPTGRYKKLLPRKI 645

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GPVE + KIN NAY+LRLP+HI T+DVFNVKHL  F           DD+  + F D   
Sbjct: 646  GPVEFIAKINANAYKLRLPAHIHTADVFNVKHLFKFEP---------DDAMLSGFVDESL 696

Query: 1985 DGDET 1999
             G+ T
Sbjct: 697  VGEGT 701


>ref|XP_007048683.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508700944|gb|EOX92840.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 647

 Score =  677 bits (1746), Expect = 0.0
 Identities = 331/638 (51%), Positives = 443/638 (69%), Gaps = 9/638 (1%)
 Frame = +2

Query: 44   VLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHFSSIMAPIT 223
            V+FLG+++ A G+  D  KI  I EWP PTS+  VRSFHGLASFYRRFI +FSSIM PIT
Sbjct: 5    VVFLGFIVPAEGLKPDPEKIRAISEWPAPTSIKEVRSFHGLASFYRRFIQNFSSIMGPIT 64

Query: 224  DCMRGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGIGAVLSQNSR 403
            + ++   F W+  A+ AF  +K  +T +PVL LPDF   F + CDAS VGIGAVLSQ+ R
Sbjct: 65   ESLKKDGFEWSHFAQKAFERVKALMTEAPVLALPDFEKLFVVECDASHVGIGAVLSQDGR 124

Query: 404  PVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSLKYISSQANV 583
             + +FSEKLT  R RYSTYD+EFYA+VRA+RHW+HYL   EF +Y+DH +L+Y+ SQ  +
Sbjct: 125  SIEFFSEKLTDSRRRYSTYDLEFYALVRAIRHWQHYLAYCEFAVYSDHQALRYLHSQKKL 184

Query: 584  SARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDTFRSLYVTDH 763
            S +HA W+ FL +F F L++KSG SN VADALSRR  +L+ M   + GF+  ++ Y +D 
Sbjct: 185  SNQHAKWSFFLNEFNFSLKYKSGQSNTVADALSRRCKMLSVMSTQVTGFEELKNQYSSDS 244

Query: 764  FFGKVLS----SVHAGTTTDFTMSDGFLFRGTRLCIPDCSLRSKLISELHNTG---HVGR 922
            +F K+++    S+ AG    + + + +LF+G +LCI + SLR ++I ELH  G   H GR
Sbjct: 245  YFSKIIADLQGSLQAGNLP-YRLHEDYLFKGNQLCILEGSLREQIIGELHGNGLGGHFGR 303

Query: 923  DRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWSAVSMDF 1102
            D+TL +V  +++WP + RDV + V+RC  C   KG+A N GLY PL  P  PW  +SMDF
Sbjct: 304  DKTLAMVADRYYWPKMHRDVERLVKRCSTCLFGKGSAQNTGLYVPLLEPDAPWIHLSMDF 363

Query: 1103 VLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLPVSIVSD 1282
            VLGLP+  +G DSIFVVV +FSKM HFIPC +T+DA H+A+LFF E+ RLHG+P SIVSD
Sbjct: 364  VLGLPKIAKGFDSIFVVVYQFSKMAHFIPCFKTSDATHIAELFFCEVVRLHGIPTSIVSD 423

Query: 1283 RDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNVKTWDIK 1462
            RD +F+ HFWR+LWR   TEL +SS  HPQTDGQTEVVNRSLGN+LRCL+ +N KTWD+ 
Sbjct: 424  RDVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRCLIQNNPKTWDLV 483

Query: 1463 LSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMANLQQIHT 1642
            + QAEFA+N+++NRS    PF+V YG+ P+  +DL+ LP  +R+      F  ++++IH 
Sbjct: 484  IPQAEFAYNNSVNRSIKKTPFEVAYGLKPQHVLDLVPLPQEARVSNEGELFAYHIRKIHE 543

Query: 1643 ATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKIGPVEIV 1822
               A L +SNA Y   A+  RR  EF  GD V   L ++R+P   YHKL SRK GP +++
Sbjct: 544  EVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHKLKSRKFGPCKVI 603

Query: 1823 EKINPNAYRLRLPSHIRTSDVFNVKHLVPFR--DGTTS 1930
            +KI+ NAY + LP  ++ S +FNV  L PF   DGT S
Sbjct: 604  KKISSNAYLIELPPELQISPIFNVLDLYPFDGCDGTAS 641


>ref|XP_007051412.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508703673|gb|EOX95569.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1452

 Score =  701 bits (1810), Expect = 0.0
 Identities = 337/650 (51%), Positives = 454/650 (69%), Gaps = 8/650 (1%)
 Frame = +2

Query: 5    YAAPRKCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRR 184
            Y   +KC F    V+FLG+++SA G+  D  KI  I EWP PTS+  VRSFHGLASFYRR
Sbjct: 724  YINLKKCSFMQPEVVFLGFIVSAEGLKPDPEKIRAISEWPAPTSIKEVRSFHGLASFYRR 783

Query: 185  FIPHFSSIMAPITDCMRGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDAS 364
            FI +FSSIM+PIT+ ++   F W+ +A+ AF  +K  +T +PVL LPDF   F + CDAS
Sbjct: 784  FIRNFSSIMSPITESLKKDGFEWSHSAQKAFERVKALMTEAPVLALPDFEKLFVVECDAS 843

Query: 365  KVGIGAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTD 544
             VGIGAVLSQ+ RP+ +FSEKLT  R RYSTYD+EFYA+VRA+RHW+HYL  REF +Y+D
Sbjct: 844  YVGIGAVLSQDGRPIEFFSEKLTDSRRRYSTYDLEFYALVRAIRHWQHYLAYREFAVYSD 903

Query: 545  HDSLKYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAII 724
            H +L+Y+ SQ  +S +HA W++FL +F F L++KSG SN VADALSRR  +L+ M   + 
Sbjct: 904  HQALRYLHSQKKLSNQHAKWSSFLNEFNFSLKYKSGQSNTVADALSRRCKMLSVMSTQVT 963

Query: 725  GFDTFRSLYVTDHFFGKVLSSVHAGTTTD---FTMSDGFLFRGTRLCIPDCSLRSKLISE 895
            GF+  ++ Y +D +F K+++ +      +   + + + +LF+G +LCIP+ SLR ++I E
Sbjct: 964  GFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLREQIIRE 1023

Query: 896  LHNTG---HVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPV 1066
            LH  G   H GRD+TL +V  +++WP +RRDV + V+RC  C   KG+A N GLY PLP 
Sbjct: 1024 LHGNGLGGHFGRDKTLVMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPE 1083

Query: 1067 PSEPWSAVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIY 1246
            P  PW  +SMDFVLGLP+T +G DSIFVVVDRFSKM HFIPC RT+DA H+A+LFF+EI 
Sbjct: 1084 PDAPWIHLSMDFVLGLPKTTKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREIV 1143

Query: 1247 RLHGLPVSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRC 1426
             LHG+P SIVSDR  +F+ +FWR+LWR   TEL +SS  HPQTDGQTEVVNRSLGN+LRC
Sbjct: 1144 ILHGIPTSIVSDRHVKFMGYFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRC 1203

Query: 1427 LVGDNVKTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRA 1606
            L+ +N KTWD+ + QAEFA+N+++NRS    PF+  YG+ P+  +DL+ LP  +R+    
Sbjct: 1204 LIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEARVSNEG 1263

Query: 1607 TDFMANLQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHK 1786
              F   +++IH    A L +SNA Y   A+  RR  EF  GD V   L ++R+P   YHK
Sbjct: 1264 ELFADQIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHK 1323

Query: 1787 LASRKIGPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFR--DGTTS 1930
            L SRK GP ++++KI+ NAY + LP  ++ + +FN+  L PF   DGT S
Sbjct: 1324 LKSRKFGPCKVLKKISSNAYLIELPPELQINPIFNILDLYPFDGCDGTAS 1373


>ref|XP_007045326.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508709261|gb|EOY01158.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 786

 Score =  679 bits (1751), Expect = 0.0
 Identities = 323/611 (52%), Positives = 432/611 (70%), Gaps = 6/611 (0%)
 Frame = +2

Query: 5    YAAPRKCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRR 184
            Y   +KC F    V+FLG+++SA G+  D  KI  I EWP PTS+  VRSFHGLASFYRR
Sbjct: 176  YINLKKCSFMQPEVVFLGFIVSAEGLKPDPEKIRAISEWPAPTSIKEVRSFHGLASFYRR 235

Query: 185  FIPHFSSIMAPITDCMRGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDAS 364
            FI +FSSIM+PIT+ ++   F W+ +A+ AF  +K  +T +PVL LPDF   F + CDAS
Sbjct: 236  FIRNFSSIMSPITESLKKDGFEWSHSAQKAFERVKALMTEAPVLALPDFEKLFVVECDAS 295

Query: 365  KVGIGAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTD 544
             VGIGAVLSQ+ RP+ +FSEKLT  R RYSTYD+EFYA+VRA+RHW+HYL  REF +Y+D
Sbjct: 296  YVGIGAVLSQDGRPIEFFSEKLTDSRRRYSTYDLEFYALVRAIRHWQHYLAYREFAVYSD 355

Query: 545  HDSLKYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAII 724
            H +L+Y+ SQ  +S +HA W++FL +F F L++KSG SN VADALSRR  +L+ M   + 
Sbjct: 356  HQALRYLHSQKKLSNQHAKWSSFLNEFNFSLKYKSGQSNTVADALSRRCKMLSVMSTQVT 415

Query: 725  GFDTFRSLYVTDHFFGKVLSSVHAGTTTD---FTMSDGFLFRGTRLCIPDCSLRSKLISE 895
            GF+  ++ Y +D +F K+++ +      +   + + + +LF+G +LCIP+ SLR ++I E
Sbjct: 416  GFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLREQIIRE 475

Query: 896  LHNTG---HVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPV 1066
            LH  G   H GRD+TL +V  +++WP +RRDV + V+RC  C   KG+A N GLY PLP 
Sbjct: 476  LHGNGLGGHFGRDKTLAMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPE 535

Query: 1067 PSEPWSAVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIY 1246
            P  PW  +SMDFVLGLP+T +G DSIFVVVDRFSKM HFIPC RT++A H+A+LFF+EI 
Sbjct: 536  PDAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSNATHIAELFFREIV 595

Query: 1247 RLHGLPVSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRC 1426
            RLHG+P SIVSDRD +F+ HFWR+LWR   TEL +SS  HPQTDGQTEVVNRSLGN+LRC
Sbjct: 596  RLHGIPTSIVSDRDVKFMGHFWRTLWRKFGTELKYSSTCHPQTDGQTEVVNRSLGNMLRC 655

Query: 1427 LVGDNVKTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRA 1606
            L+ +N KTWD+ + QAEFA+N+++NRS    PF+  YG+ P+  +DL+ LP  +R+    
Sbjct: 656  LIQNNPKTWDLVIPQAEFAYNNSVNRSIKKTPFEAAYGLKPQHVLDLVPLPQEARVSNEG 715

Query: 1607 TDFMANLQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHK 1786
              F  ++++IH    A L +SNA Y   A+  RR  EF  GD V   L ++R+P   YHK
Sbjct: 716  ELFADHIRKIHEEVKAALKASNAEYSFTANQHRRKQEFEEGDQVLVHLRQERFPKGTYHK 775

Query: 1787 LASRKIGPVEI 1819
            L SRK GP ++
Sbjct: 776  LKSRKFGPCKV 786


>ref|XP_007207981.1| hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica]
            gi|462403623|gb|EMJ09180.1| hypothetical protein
            PRUPE_ppa015715mg, partial [Prunus persica]
          Length = 1445

 Score =  699 bits (1805), Expect = 0.0
 Identities = 347/648 (53%), Positives = 443/648 (68%), Gaps = 6/648 (0%)
 Frame = +2

Query: 5    YAAPRKCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRR 184
            YA  +KC F    VLFLG+ ISAAG+S D +K+  I +WPTPT++T  RSFHGL SFYRR
Sbjct: 716  YANLKKCSFLQPEVLFLGFNISAAGVSTDPAKVEAIIDWPTPTTLTEARSFHGLTSFYRR 775

Query: 185  FIPHFSSIMAPITDCMRGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDAS 364
            FIP FS+IMAPITDCM+   F+WT AA  AF  +KQK+T +PVL                
Sbjct: 776  FIPGFSTIMAPITDCMKQGAFLWTHAAAKAFTILKQKMTQAPVL---------------- 819

Query: 365  KVGIGAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTD 544
                   L+Q   PVAYFSEKL   + RYSTYD EFYAVV+A+R+W++YL   EFVLY+D
Sbjct: 820  -------LNQEGHPVAYFSEKLNEAKQRYSTYDKEFYAVVQALRYWQYYLLPNEFVLYSD 872

Query: 545  HDSLKYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAII 724
            H +LKY+ SQ  +S+RH  W+ +LQ FTFVLRH+ G  N+VADALSR  ++L  M V + 
Sbjct: 873  HQALKYLHSQRTISSRHVKWSEYLQIFTFVLRHRPGIDNKVADALSRVATILHTMTVQVT 932

Query: 725  GFDTFRSLYVTDHFFGKVLSSVHAGTT---TDFTMSDGFLFRGTRLCIPDCSLRSKLISE 895
            GFD  ++ Y +   FG +   V  G      DF   DGFLFRGT+LCIP  SLR  L+ E
Sbjct: 933  GFDRIKTEYSSCPDFGIIFHEVSNGNRREYVDFITRDGFLFRGTQLCIPRTSLREFLVWE 992

Query: 896  LHN---TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPV 1066
            LH     GH G+D+T+ LV+ +F+WPSL+RDV   + +CR CQLAK    N GLY PLP+
Sbjct: 993  LHGGGLAGHFGKDKTIALVEDRFYWPSLKRDVAHLISQCRTCQLAKARKRNTGLYTPLPI 1052

Query: 1067 PSEPWSAVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIY 1246
            P  PW  +SMDFVLGLP+T RG+DSIFV+VDRFSKM HF+PC + TDA +VA+LFFKE+ 
Sbjct: 1053 PHTPWKDLSMDFVLGLPKTSRGYDSIFVIVDRFSKMAHFLPCAKNTDASYVAKLFFKEVV 1112

Query: 1247 RLHGLPVSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRC 1426
            RLHGLPVSIVSDRD +F+S+FW++LW+   T L FSSA+HPQTDGQTEVVNRSLG+LLRC
Sbjct: 1113 RLHGLPVSIVSDRDVKFVSYFWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSLGDLLRC 1172

Query: 1427 LVGDNVKTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRA 1606
            LVGD    WD+ L  AEFA+N+++NRSTG  PF+VV+G  PR PVDL+ALP  +R    A
Sbjct: 1173 LVGDKPGNWDLLLPVAEFAYNNSVNRSTGKSPFEVVHGFSPRSPVDLVALPVAARTSDSA 1232

Query: 1607 TDFMANLQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHK 1786
            T F  +++Q+H      +      YK AA++ RR  EF  GD V   +  +R+P H + K
Sbjct: 1233 TSFAEHIRQLHDDVRRQISMHTDTYKLAANAHRRQQEFREGDFVMVRVCPERFPKHSFKK 1292

Query: 1787 LASRKIGPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTS 1930
            L +R +GP  I++K+  NAY + LP+ +  S +FNV  L P+R GT S
Sbjct: 1293 LHARSMGPYRIIKKLGSNAYLIELPADMHISPIFNVSDLSPYR-GTFS 1339


>ref|XP_007221749.1| hypothetical protein PRUPE_ppb022800mg, partial [Prunus persica]
            gi|462418685|gb|EMJ22948.1| hypothetical protein
            PRUPE_ppb022800mg, partial [Prunus persica]
          Length = 722

 Score =  672 bits (1734), Expect = 0.0
 Identities = 330/619 (53%), Positives = 427/619 (68%), Gaps = 6/619 (0%)
 Frame = +2

Query: 77   GISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHFSSIMAPITDCMRGTTFVWT 256
            GIS D  K+  I  WP P+++T  RSFHGLASFYRRFIP FS+IMAPITDCM+   F WT
Sbjct: 1    GISADPDKVHAIVNWPLPSTLTETRSFHGLASFYRRFIPSFSTIMAPITDCMKQGEFRWT 60

Query: 257  AAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGIGAVLSQNSRPVAYFSEKLTG 436
             AA  AF  +KQK+T +PVL  P+ +  FE+  DAS VGIG VLSQ   PVAYFSEKL  
Sbjct: 61   HAATRAFEALKQKMTEAPVLHHPELTKVFEVARDASGVGIGGVLSQEGHPVAYFSEKLNE 120

Query: 437  PRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSLKYISSQANVSARHASWAAFL 616
             + +YSTY+ EFY++VRA+R+W++YL   EFVLY+DH +L+Y+ SQ NVS+RH  W  +L
Sbjct: 121  AKQKYSTYNKEFYSIVRALRYWQYYLLPNEFVLYSDHQALRYLHSQRNVSSRHIKWTEYL 180

Query: 617  QQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDTFRSLYVTDHFFGKVLSSVHA 796
            Q FTFV+RH+ G  N+VADALSR   +L  +   ++GFD  ++ Y +   FG +   V A
Sbjct: 181  QIFTFVIRHRPGVDNKVADALSRVGVILQSLTAQVVGFDKIKTEYSSCPDFGLIFQEVTA 240

Query: 797  GTT---TDFTMSDGFLFRGTRLCIPDCSLRSKLISELHN---TGHVGRDRTLDLVQRQFF 958
                   DF + DG+LFRGT+LCIP  SLR  L+ ELH     GH G+D+T+ LV  +F+
Sbjct: 241  RNRRDHVDFLLRDGYLFRGTQLCIPRTSLRDFLVWELHAGGLAGHFGKDKTITLVADRFY 300

Query: 959  WPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWSAVSMDFVLGLPRTQRGHD 1138
            WPSL+RDV   + +CR CQLAK    N GLY PLP+P  PW  +SMDFVLGLP+T RGHD
Sbjct: 301  WPSLKRDVAHILAQCRTCQLAKARKQNTGLYTPLPIPHTPWKDLSMDFVLGLPKTARGHD 360

Query: 1139 SIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLPVSIVSDRDTRFLSHFWRS 1318
            SI VVVDRFSKM HF+PC +  DA +VA+LFFKE+  LHGLPVSIVSDRD +F+S+FW++
Sbjct: 361  SILVVVDRFSKMAHFLPCSKAADASYVAKLFFKEVIHLHGLPVSIVSDRDVKFVSYFWKT 420

Query: 1319 LWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNVKTWDIKLSQAEFAHNSAL 1498
            LW+   T L FSSA+HPQTDGQTEVVNRSL +LLRCLVGD    WD+ L  AEFA+N++ 
Sbjct: 421  LWKLFGTSLKFSSAFHPQTDGQTEVVNRSLRDLLRCLVGDKQGNWDLILPVAEFAYNNSA 480

Query: 1499 NRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMANLQQIHTATHAHLISSNAR 1678
            NR+TG  PF++VYG++PR P+DL  LP  +R    AT F  +++Q        +  S   
Sbjct: 481  NRTTGKSPFEIVYGVMPRPPIDLAPLPIDARPSESATTFAEHIRQ-------KISLSTNT 533

Query: 1679 YKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKIGPVEIVEKINPNAYRLRL 1858
            Y+ AA++ RR  +F  GD V   +  +R+P H + KL +R +GP  I+ K+  NAY + L
Sbjct: 534  YQLAANTHRRTQDFQEGDYVMVRVCPERFPKHSFKKLHARSMGPYRILRKLGANAYLVEL 593

Query: 1859 PSHIRTSDVFNVKHLVPFR 1915
            PS +  S +FNV  L P+R
Sbjct: 594  PSDVHISPIFNVSDLFPYR 612


>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
            gi|462405925|gb|EMJ11389.1| hypothetical protein
            PRUPE_ppa017790mg [Prunus persica]
          Length = 1485

 Score =  695 bits (1793), Expect = 0.0
 Identities = 333/645 (51%), Positives = 450/645 (69%), Gaps = 4/645 (0%)
 Frame = +2

Query: 17   RKCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPH 196
            +KC F T+++LFLG+V+   GI +D+ KI  I +WP P +++ VRSFHGLA+FYRRF+ H
Sbjct: 813  KKCTFCTNKLLFLGFVVGEHGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYRRFVRH 872

Query: 197  FSSIMAPITDCMRGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            FSSI+APIT+C++   F W    E +F  IK+KL T+PVL LP+F   FE+ CDAS VG+
Sbjct: 873  FSSIVAPITECLKKGRFSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDASGVGV 932

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            GAVLSQ+ RPVA+FSEKL+  R ++STYD EFYAVVRA++ W HYL Q+EFVL+TDH +L
Sbjct: 933  GAVLSQDKRPVAFFSEKLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTDHQAL 992

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            KYI+SQ N+   HA W  FLQ+F+FV++H SG +NRVADALSRR SLL  +   ++GF+ 
Sbjct: 993  KYINSQKNIDKMHARWVTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQEVVGFEC 1052

Query: 737  FRSLYVTDHFFGKVLSS-VHAGTTTDFTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             + LY  D  FG++ +   +     D+ +++G+LF+G +LCIP  SLR KLI +LH    
Sbjct: 1053 LKELYEGDADFGEIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLREKLIRDLHGGGL 1112

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
            +GH+GRD+T+  ++ +F+WP L+RDVG  V +C  CQ +KG   N GLY PLPVP++ W 
Sbjct: 1113 SGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPNDIWQ 1172

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             ++MDFVLGLPRTQRG DS+FVVVDRFSKM HFI C++T DA ++A+LFF+E+ RLHG+P
Sbjct: 1173 DLAMDFVLGLPRTQRGVDSVFVVVDRFSKMAHFIACRKTADASNIAKLFFREVVRLHGVP 1232

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             SI SDRDT+FLSHFW +LWR   T L+ SS  HPQTDGQTEV NR+LGN++R + G+  
Sbjct: 1233 TSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVCGEKP 1292

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K WD  L Q EFA+NSA++ +TG  PF +VY  +P   VDL+ LP   +    A +    
Sbjct: 1293 KQWDYALPQVEFAYNSAVHSATGKSPFSIVYTAMPNHVVDLVKLPRGQQTSVAAKNLAEE 1352

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            +  +       L  +NA+YKAAAD  RR   F  GD V   L K+R+P   Y KL  +K 
Sbjct: 1353 VVAVRDEVKQKLEQTNAKYKAAADKHRRVKVFQEGDSVMIFLRKERFPVGTYSKLKPKKY 1412

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDE 1939
            GP +++++IN NAY + LP  +  S++FNV  L  FR+    G +
Sbjct: 1413 GPYKVLKRINDNAYVIELPDSMGISNIFNVADLYEFREDEVEGTD 1457


>ref|XP_007207232.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
            gi|462402874|gb|EMJ08431.1| hypothetical protein
            PRUPE_ppa026856mg [Prunus persica]
          Length = 1493

 Score =  685 bits (1768), Expect = 0.0
 Identities = 331/649 (51%), Positives = 445/649 (68%), Gaps = 4/649 (0%)
 Frame = +2

Query: 5    YAAPRKCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRR 184
            Y   +KC F T+++LFLG+V+   GI +D+ KI  I +WP P +++ VRSFHGLA+FY R
Sbjct: 817  YVNLKKCTFCTNKLLFLGFVVGENGIQVDDEKIKAILDWPAPKTVSEVRSFHGLATFYMR 876

Query: 185  FIPHFSSIMAPITDCMRGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDAS 364
            F+ HFSSI APIT+C++   F W    E +F  IK+KL T+PVL LP+F   FE+ CDAS
Sbjct: 877  FVRHFSSIAAPITECLKKGRFSWGEEQERSFADIKEKLCTAPVLALPNFEKVFEVECDAS 936

Query: 365  KVGIGAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTD 544
             VG+GAVL Q+ RPVA+FSEKL+  R ++STYD EFYAVVRA++ W HYL Q+EFVL+TD
Sbjct: 937  GVGVGAVLLQDKRPVAFFSEKLSDARQKWSTYDQEFYAVVRALKQWEHYLIQKEFVLFTD 996

Query: 545  HDSLKYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAII 724
            H +LKYI+SQ N+   HA W  FLQ+F+FV++H SG +NRVADALSRR SLL  +   ++
Sbjct: 997  HQALKYINSQKNIDKMHARWVTFLQKFSFVIKHTSGKTNRVADALSRRASLLITLTQEVV 1056

Query: 725  GFDTFRSLYVTDHFFGKVLSS-VHAGTTTDFTMSDGFLFRGTRLCIPDCSLRSKLISELH 901
            GF+  + LY  D  F ++ +   +    TD+ +++G+LF+G +LCIP  SLR KLI +LH
Sbjct: 1057 GFECLKELYEGDDDFREIWTKCTNQEPMTDYFLTEGYLFKGNQLCIPVSSLREKLIRDLH 1116

Query: 902  N---TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPS 1072
                +GH+GRD+T+  ++ +F+WP L+RDVG  V +C  CQ +KG   N GLY PLPVP+
Sbjct: 1117 GGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKCYTCQTSKGQVQNTGLYMPLPVPN 1176

Query: 1073 EPWSAVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRL 1252
            + W  ++MDFVLG PRTQR  DS+FVV DRFSKM HFI CK+T DA ++A+LFF+E+ RL
Sbjct: 1177 DIWQDLAMDFVLGFPRTQRRVDSVFVVADRFSKMAHFIACKKTADASNIAKLFFREVVRL 1236

Query: 1253 HGLPVSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLV 1432
            HG+P SI SDRDT+FLSHFW +LWR   T L+ SS  HPQTDGQTEV NR+LGN++R + 
Sbjct: 1237 HGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTLGNMVRSVC 1296

Query: 1433 GDNVKTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATD 1612
            G+  K WD  L Q EFA+NSA++ +TG  PF +VY   P   VDL+ LP   +    A +
Sbjct: 1297 GEKPKQWDYALPQMEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRGQQTSVAAKN 1356

Query: 1613 FMANLQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLA 1792
                +  +       L  +NA+YKAAAD  RR   F  GD V   L K+R+PA  Y KL 
Sbjct: 1357 LAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMVFLRKERFPAGTYSKLK 1416

Query: 1793 SRKIGPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDE 1939
             +K GP +++++IN NAY + LP  +  S++FNV  L  FR+    G +
Sbjct: 1417 PKKYGPYKVLKRINDNAYDIELPDSMGISNIFNVADLYEFREDEVEGTD 1465


>gb|KYP77891.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
          Length = 797

 Score =  660 bits (1704), Expect = 0.0
 Identities = 326/668 (48%), Positives = 437/668 (65%), Gaps = 5/668 (0%)
 Frame = +2

Query: 5    YAAPRKCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRR 184
            +A   KC F TD V+FLG+V+S+ G+ +DE KI  I+EWPTP +++ VRSFHGLASFYRR
Sbjct: 132  FANIEKCTFCTDHVVFLGFVVSSKGVQVDEEKIRAIQEWPTPKNVSEVRSFHGLASFYRR 191

Query: 185  FIPHFSSIMAPITDCMRGTT-FVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDA 361
            F+  FS++ AP+ + ++    F W    E AF  +K KLT +P+L LP+F+  FE+ CDA
Sbjct: 192  FVKDFSTLAAPLNEIVKKHVGFKWGEKQEKAFSELKHKLTNAPILALPNFAKSFEIECDA 251

Query: 362  SKVGIGAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYT 541
            S VGIGAVL Q   P+AYFSEKL G    Y TYD E YA+VRA+R W+HYL  +EFV+++
Sbjct: 252  SNVGIGAVLMQEGHPIAYFSEKLNGAALNYPTYDKELYALVRALRTWQHYLLPKEFVIHS 311

Query: 542  DHDSLKYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAI 721
            DH+SLKY+  Q  ++ RHA W  FL+QF +V++HK G  N VADALSRRH+LL+ +   +
Sbjct: 312  DHESLKYLKGQGKLNKRHAKWVEFLEQFPYVIKHKKGKGNVVADALSRRHNLLSMLETKL 371

Query: 722  IGFDTFRSLYVTDHFFGKVLSSVHAGTTTDFTMSDGFLFRGTRLCIPDCSLRSKLISELH 901
             G ++ + +Y+ D  F +  ++    +   +   +GFLF+  RLC+P CS+R  L+SE H
Sbjct: 372  FGLESLKDMYMHDVDFAENFAACEKFSENGYYRHNGFLFKANRLCVPKCSIRELLVSESH 431

Query: 902  N---TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPS 1072
                 GH G  +TL+++Q  F+WP ++ DV KF + C VC+ AK      GLY PLPVP 
Sbjct: 432  EGGLMGHFGVQKTLEILQEHFYWPHMKHDVHKFCDHCIVCKKAKSKVKPHGLYTPLPVPD 491

Query: 1073 EPWSAVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRL 1252
             PW  +SMDFVLGLPRT+ G DSIFVVVDRFSKM HFIPCK+  DA HVA LFF+E+ RL
Sbjct: 492  FPWIDISMDFVLGLPRTKNGKDSIFVVVDRFSKMAHFIPCKKVNDACHVADLFFREVVRL 551

Query: 1253 HGLPVSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLV 1432
            HGLP SIVSDRDT+FLSHFWR+LW    T+L FS+  HPQTDGQTEVVNR+LG LLR ++
Sbjct: 552  HGLPRSIVSDRDTKFLSHFWRTLWGKLGTKLLFSTTCHPQTDGQTEVVNRTLGTLLRTVL 611

Query: 1433 GDNVKTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATD 1612
              N+K W+  L   EFA+N A++ +T   PF++VYG  P  P+DL+ +P+ S  + +   
Sbjct: 612  KKNIKFWEEHLPHVEFAYNRAVHSTTKCSPFEIVYGFNPLTPLDLLPMPNISEFKHKDAQ 671

Query: 1613 FMAN-LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKL 1789
              A  ++++H    A +      Y   A+  R+ V F  GD VW  + K+R+P     KL
Sbjct: 672  AKAEYVKKLHEQVKAQIEKKIESYVKQANKGRKKVIFEPGDWVWVHMRKERFPEQRKSKL 731

Query: 1790 ASRKIGPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRF 1969
              R  GP +++EKIN NAY++ LP     S  FNV  L  F     +GDE     R N  
Sbjct: 732  QPRGDGPFQVLEKINDNAYKIDLPGEYGVSSSFNVADLTHF----DAGDE-FIALRKNVA 786

Query: 1970 QDGENDGD 1993
            Q+GEND D
Sbjct: 787  QEGENDVD 794


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  661 bits (1705), Expect = 0.0
 Identities = 319/625 (51%), Positives = 425/625 (68%), Gaps = 5/625 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++K+  I  WP PT++T VRSF GLA FYR F+  F
Sbjct: 247  KCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRHFVKDF 306

Query: 200  SSIMAPITDCM-RGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +   R  TF W AA   AF T+K KLT +P+L LPDF+  FEL CDAS +G+
Sbjct: 307  STIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGL 366

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q  +PVAYFSEKL+GP   YSTYD E +A+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 367  GGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESL 426

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQA ++ RHA W  F++ F +V++HK G  N +ADALSRR+++L+ +   I G +T
Sbjct: 427  KHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLET 486

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  Y  D  F  VL +   G T + F +++GF+FR  +LCIP  S+R  L+ E H    
Sbjct: 487  IKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGL 546

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +T D++   FFWP +RRDV +FV RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 547  MGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWE 606

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC ++ DA HVA LFF+EI RLHG+P
Sbjct: 607  DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVP 666

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRDT+FLSHFWR+LW    T+L FS+  HPQTDGQTEVVNR+L  +LR ++  N+
Sbjct: 667  NTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNI 726

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N + + +T  CPF++VYG++PR P+DL+ LP+  R+   A      
Sbjct: 727  KMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKHRAEL 786

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   N +YK A    ++HV F  GDLVW  L KDR+P     KL  R  
Sbjct: 787  MLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLQPRAD 846

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTS 1879
            GP ++++KIN NAY+L LP+    S
Sbjct: 847  GPFKVLQKINDNAYKLELPADFGVS 871


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  685 bits (1767), Expect = 0.0
 Identities = 337/663 (50%), Positives = 447/663 (67%), Gaps = 5/663 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++KI  I  WP P ++T VRSF GLA FYRRF+  F
Sbjct: 950  KCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRFVRDF 1009

Query: 200  SSIMAPITDCMR-GTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +  +    FVW  A E AF  +K KLT +P+L LP+F+  FEL CDAS +G+
Sbjct: 1010 STIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLLQLPNFNKTFELECDASGIGL 1069

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q+ +PVAYFSEK +GP   YSTYD E YA+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 1070 GGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESL 1129

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQA ++ RHA W  F++ F +V++HK G  N +ADALSRR+++L+ +   I G +T
Sbjct: 1130 KHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKENVIADALSRRYTMLSQLDFKIFGLET 1189

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  YV D  F  VL +   G T + F ++DGF+FR  +LCIP  S+R  L+ E H    
Sbjct: 1190 IKDQYVHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHGGGL 1249

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +T D++   FFWP +RRDV +FV RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 1250 MGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWE 1309

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC ++ DA++VA LFF+EI RLHG+P
Sbjct: 1310 DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAVNVADLFFREIIRLHGVP 1369

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRDT+FLSHFWR LW     +L FS+  HPQTDGQTEVVNR+L  +LR ++ +N 
Sbjct: 1370 NTIVSDRDTKFLSHFWRCLWAKLGNKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKNNK 1429

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N +L+ +T  CPF++VYG +PR P+DL+ LPS  ++   A +    
Sbjct: 1430 KMWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPLPSSEKVNFDAKERSEL 1489

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + +IH  T  ++   NA+YK A D  R+HV F+ GDLVW  L KDR+P     KL  R  
Sbjct: 1490 ILKIHELTKENIERMNAKYKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRAD 1549

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GP +++EKIN NAY+L LP+    S  FN+  L P+      G+E    SR   FQ+GE+
Sbjct: 1550 GPFKVLEKINDNAYKLELPADFGVSPTFNIADLKPY-----LGEEDELPSRTTSFQEGED 1604

Query: 1985 DGD 1993
            D D
Sbjct: 1605 DED 1607


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  681 bits (1757), Expect = 0.0
 Identities = 336/663 (50%), Positives = 441/663 (66%), Gaps = 5/663 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++K+  I  WP P ++T VRSF GLA FYRRF+  F
Sbjct: 909  KCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDF 968

Query: 200  SSIMAPITDCMR-GTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +  + G  F W    E AF  +K KLT +P+L LPDF+  FEL CDAS +G+
Sbjct: 969  STIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDASGIGL 1028

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q  +PVAYFSEKL+G    YSTYD E YA+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 1029 GGVLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESL 1088

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQ  ++ RHA W  F++ F +V++HK G  N +ADALSRR++LL  +   I G +T
Sbjct: 1089 KHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKIFGLET 1148

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  YV D  F  VL     G   + + +SDGF+FR  +LCIP  S+R  L+ E H    
Sbjct: 1149 IKDQYVHDADFKDVLLHCKDGKGWNKYIVSDGFVFRANKLCIPASSVRLLLLQEAHGGGL 1208

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +T D++   FFWP +RRDV + V RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 1209 MGHFGAKKTEDILAGHFFWPKMRRDVVRLVARCTTCQKAKSRLNPHGLYLPLPVPSAPWE 1268

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DS+FVVVDRFSKM HFIPC +T DA H+A LFF+EI RLHG+P
Sbjct: 1269 DISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFFREIVRLHGVP 1328

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRD +FLSHFWR+LW    T+L FS+  HPQTDGQTEVVNR+L  +LR ++  N+
Sbjct: 1329 NTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNI 1388

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N +L+ +T  CPFQ+VYG++PR P+DLM LPS  +L   AT     
Sbjct: 1389 KMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDLMPLPSSEKLNFDATRRAEL 1448

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   NARYK A+D  R+ + F  GDLVW  L K+R+P     KL  R  
Sbjct: 1449 MLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRAD 1508

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GP +++EKIN NAYRL LP+    S  FN+  L P+      G+E   +SR  + Q+GEN
Sbjct: 1509 GPFKVLEKINDNAYRLDLPADFGVSPTFNIADLKPY-----LGEEVELESRTTQMQEGEN 1563

Query: 1985 DGD 1993
            D D
Sbjct: 1564 DED 1566


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  679 bits (1752), Expect = 0.0
 Identities = 330/663 (49%), Positives = 444/663 (66%), Gaps = 5/663 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++K+  I  WP PT++T VRSF GLA FYRRF+  F
Sbjct: 934  KCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDF 993

Query: 200  SSIMAPITDCM-RGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +   R  TF W AA   AF T+K KLT +P+L LPDF+  FEL CDAS +G+
Sbjct: 994  STIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGL 1053

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q  +P+ YFSEKL+GP   YSTYD E +A+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 1054 GGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESL 1113

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQA ++ RHA W  F++ F +V++HK G  N +ADALSRR+++L+ +   I G +T
Sbjct: 1114 KHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLET 1173

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  Y  D  F  VL +   G T + F +++GF+FR  +LCIP  S+R  L+ E H    
Sbjct: 1174 IKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGL 1233

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +T D++   FFWP +RRDV +FV RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 1234 MGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSVPWE 1293

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC ++ DA HVA LFF+EI RLHG+P
Sbjct: 1294 DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVP 1353

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRDT+FLSHFWR+LW    T+L FS+  HPQTDGQTEVVNR+L  +LR ++  N+
Sbjct: 1354 NTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNI 1413

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N + + +T  CPF++VYG++PR P+DL+ LP+  R+   A      
Sbjct: 1414 KMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYHAEL 1473

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   N +YK A    ++HV F  GDLVW  L KDR+P     KL  R  
Sbjct: 1474 MLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRAD 1533

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GP ++++KIN N Y+L LP+    S  FN+  L P+      G+E   +SR  + Q+GE+
Sbjct: 1534 GPFKVLQKINDNTYKLELPADFGVSPTFNIADLKPY-----LGEEDELESRTTQMQEGED 1588

Query: 1985 DGD 1993
            D D
Sbjct: 1589 DED 1591


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  678 bits (1750), Expect = 0.0
 Identities = 334/663 (50%), Positives = 444/663 (66%), Gaps = 5/663 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++KI  I  WP P ++T VRSF G A FYRRF+  F
Sbjct: 965  KCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRFVRDF 1024

Query: 200  SSIMAPITDCMR-GTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +  +    + W  A E AF  +K KLT +P+L LPDF+  FEL CDAS +G+
Sbjct: 1025 STIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGL 1084

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q+ +PVAYFSEKL+GP   YSTYD E YA+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 1085 GGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESL 1144

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQA ++ RHA W  F++ F +V++HK G  N +ADALSRR+++L+ +   I G +T
Sbjct: 1145 KHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKIFGLET 1204

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  YV D  F  VL +   G T + F +++GF+FR  +LCIP  S+R  L+ E H    
Sbjct: 1205 IKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGL 1264

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +  D++   FFWP +RRDV +FV RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 1265 MGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWE 1324

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC ++ DA +VA LFF+EI RLHG+P
Sbjct: 1325 DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVP 1384

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRD +FLSHFWR LW    T+L FS+  HPQTDGQTEVVNRSL  +LR ++ +N+
Sbjct: 1385 NTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKNNI 1444

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N +L+ +T  CPF++VYG +PR P+DL+ +PS  ++   A +    
Sbjct: 1445 KLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAEL 1504

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   NARYK A D  R+HV F+ GDLVW  L KDR+P     KL  R  
Sbjct: 1505 ILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAG 1564

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GP +++EKIN NAYRL LP+    S  FN+  L P+      G+E    SR    Q+GE+
Sbjct: 1565 GPFKVLEKINDNAYRLELPADFGVSPTFNIADLKPY-----LGEEDELPSRTTSVQEGED 1619

Query: 1985 DGD 1993
            D D
Sbjct: 1620 DED 1622


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  675 bits (1741), Expect = 0.0
 Identities = 329/663 (49%), Positives = 442/663 (66%), Gaps = 5/663 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FL YV++  GI +D++K+  I  WP PT++T VRSF GLA FYRRF+  F
Sbjct: 934  KCTFCTDRVSFLSYVVTPQGIEVDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDF 993

Query: 200  SSIMAPITDCM-RGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +   R  TF W AA   AF T+K KLT +P+L LPDF+  FE  CDAS +G+
Sbjct: 994  STIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDASGIGL 1053

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q  +PVAYFSEKL+GP   YSTYD E +A+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 1054 GGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESL 1113

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQA ++ RHA W  F++ F +V++HK G  N +ADALSRR+++L+ +   I G +T
Sbjct: 1114 KHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLET 1173

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  Y  D  F  VL +   G T + F +++GF+FR  +LCIP  S+R  L+ E H    
Sbjct: 1174 IKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHGGGL 1233

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +T D++   FFWP +RRDV +FV RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 1234 MGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWE 1293

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC ++ DA HVA LFF+EI RLHG+P
Sbjct: 1294 DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVP 1353

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRDT+FLSHFWR+LW    T+  FS+  HPQTDGQTEVVNR+L  +LR ++  N+
Sbjct: 1354 NTIVSDRDTKFLSHFWRTLWAKLGTKFLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNI 1413

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N + + +T  CPF++VYG++PR P+DL+  P+  R+   A      
Sbjct: 1414 KMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPHPTSERVNFDAKYRAEL 1473

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   N +YK A    ++HV F  GDLVW  L KDR+P     KL  R  
Sbjct: 1474 MLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRAD 1533

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GP ++++KIN NAY+L LP+    S  FN+  L P+      G+E   +SR  + Q+GE+
Sbjct: 1534 GPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPY-----LGEEDELESRTTQMQEGED 1588

Query: 1985 DGD 1993
            D D
Sbjct: 1589 DED 1591


>dbj|BAA89466.1| gag-pol polyprotein, partial [Oryza sativa Indica Group]
          Length = 1587

 Score =  672 bits (1734), Expect = 0.0
 Identities = 329/659 (49%), Positives = 439/659 (66%), Gaps = 5/659 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++K+  I  WP PT++T VRSF GLA FYRRF+  F
Sbjct: 934  KCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDF 993

Query: 200  SSIMAPITDCM-RGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +   R  TF W AA   AF T+K KLT +P+L LPDF+  FEL CDAS +G+
Sbjct: 994  STIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGL 1053

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q  +PVAYFSEKL+GP   YSTYD E +A+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 1054 GGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESL 1113

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQA  + RHA W  F++ F +V++HK G  N +ADALSRR+++L+ +   I G +T
Sbjct: 1114 KHIRSQAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKIFGLET 1173

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  Y  D  F  VL +   G T + F +++GF+FR  +LCIP  S+   L+ E H    
Sbjct: 1174 IKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGL 1233

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +  D++   FFWP  RRDV +FV RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 1234 MGHFGVKKMEDILADHFFWPKKRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWE 1293

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC ++ DA HVA LFF+EI RLHG+P
Sbjct: 1294 DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVP 1353

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRDT+FLSHFWR+LW    T+L FS+  HPQTDGQTEVVNR+L  +LR ++  N+
Sbjct: 1354 NTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTLSTMLRAVLKKNI 1413

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N + + +T  CPF++VYG++PR P+DL+ LP+  R+   A      
Sbjct: 1414 KMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTSERVNFDAKYRAEL 1473

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   N +YK A    ++HV F  GDLVW  L KDR+P     KL  R  
Sbjct: 1474 MLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRAD 1533

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGE 1981
            GP ++++KIN NAY+L LP+    S  FN+  L P+      G+E   +SR  + Q+GE
Sbjct: 1534 GPFKVLQKINDNAYKLELPADFGVSPTFNIADLKPY-----LGEEDELESRTTQMQEGE 1587


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  672 bits (1735), Expect = 0.0
 Identities = 327/663 (49%), Positives = 442/663 (66%), Gaps = 5/663 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++K+  I  WP PT++T VRSF GLA FYR F+  F
Sbjct: 830  KCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRLFVKDF 889

Query: 200  SSIMAPITDCM-RGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +   R  TF W AA   AF T+K KLT +P+L LPDF+  FEL CDAS +G+
Sbjct: 890  STIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGL 949

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q  +PVAYFSEKL+GP   YSTYD + +A+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 950  GGVLLQEGKPVAYFSEKLSGPSLNYSTYDKQLFALVRTLETWQHYLWPKEFVIHSDHESL 1009

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQA ++ RHA W  F++ F +V++HK G  N + DALSRR+++L+ +   I G +T
Sbjct: 1010 KHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAMLSQLDFKIFGLET 1069

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  Y  D  F  VL +   G T + F +++GF+FR  +LCIP  S+   L+ E H    
Sbjct: 1070 IKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHGGGL 1129

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +T D++    FWP +RRDV +FV RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 1130 MGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWE 1189

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC ++ DA HVA LFF+EI RLHG+P
Sbjct: 1190 DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREIVRLHGVP 1249

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRDT+FLSHFWR+LW    T+L FS+  HPQTDGQTEVVNR++  +LR ++  N+
Sbjct: 1250 NTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQTEVVNRTVSTMLRAVLKKNI 1309

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N + + +T  CPF++VYG++PR P+DL+ LP+  R+   A      
Sbjct: 1310 KMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDLLPLPTLERVNFDAKYRAEL 1369

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   N +YK A    ++HV F  GDLVW  L KDR+P     KL  R  
Sbjct: 1370 MLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLPPRAD 1429

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GP ++++KIN NAY+L LP+    S  FN+  L P+      G+E   +SR  + Q+GE+
Sbjct: 1430 GPFQVLQKINDNAYKLELPADFGVSPTFNIADLKPY-----LGEEDELESRTTQMQEGED 1484

Query: 1985 DGD 1993
            D D
Sbjct: 1485 DED 1487


>ref|XP_007206823.1| hypothetical protein PRUPE_ppa025991mg [Prunus persica]
            gi|462402465|gb|EMJ08022.1| hypothetical protein
            PRUPE_ppa025991mg [Prunus persica]
          Length = 1274

 Score =  663 bits (1710), Expect = 0.0
 Identities = 336/648 (51%), Positives = 432/648 (66%), Gaps = 6/648 (0%)
 Frame = +2

Query: 5    YAAPRKCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRR 184
            YA  +KC F   +VLFLG+ ISAAG+S D +K+  I  WPTPT++T  RSFHGL SFYRR
Sbjct: 543  YANLKKCSFLQPQVLFLGFNISAAGVSTDPAKVEAIINWPTPTTLTEARSFHGLTSFYRR 602

Query: 185  FIPHFSSIMAPITDCMRGTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDAS 364
            FIP FS IMA ITDCM+   F+WT AA  AF  +KQK+T +PV   PD +  FE+ CDAS
Sbjct: 603  FIPGFSIIMALITDCMKQGAFLWTHAAAKAFTILKQKMTQAPVFRHPDLTKVFEVTCDAS 662

Query: 365  KVGIGAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTD 544
             VGIG VLSQ   PVAYFSEKL   + RYST+D EFY VV+A+R+W++YL   EFVLY+D
Sbjct: 663  GVGIGGVLSQEGHPVAYFSEKLNEAKQRYSTHDKEFYDVVQALRYWQYYLLPNEFVLYSD 722

Query: 545  HDSLKYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAII 724
            H +LKY+ SQ  +S+                       N+VADALSR  ++L  M V + 
Sbjct: 723  HQALKYLHSQRTISS---------------------IDNKVADALSRVATILHTMTVQVN 761

Query: 725  GFDTFRSLYVTDHFFGKVLSSVHAGTT---TDFTMSDGFLFRGTRLCIPDCSLRSKLISE 895
            GFD  ++ Y +   FG +   V  G      DF   DGFLFR T+LCIP  SL   L+ E
Sbjct: 762  GFDRIKTEYSSCPDFGIIFHEVSNGNRREYVDFITRDGFLFRRTQLCIPRTSLLEFLVWE 821

Query: 896  LHN---TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPV 1066
            LH     GH G+D+T+ LV+  F+WPSL+RDV   + +CR CQLAK    N G+Y PLP+
Sbjct: 822  LHGGGLAGHFGKDKTIALVEDHFYWPSLKRDVAHLISQCRTCQLAKARKRNTGVYTPLPI 881

Query: 1067 PSEPWSAVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIY 1246
            P  PW  +SMDFVLGLP+T RG+DSIFV+VD FSKM HF+PC + TDA ++A+LFFKE+ 
Sbjct: 882  PHAPWKDLSMDFVLGLPKTSRGYDSIFVIVDCFSKMAHFLPCAKNTDASYMAKLFFKEVV 941

Query: 1247 RLHGLPVSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRC 1426
            RLHGL VSIVSDRD +F+S+FW++LW+   T L FSSA+HPQTDGQTEVVNRSLG+LL C
Sbjct: 942  RLHGLLVSIVSDRDFKFVSYFWKTLWKLFGTTLKFSSAFHPQTDGQTEVVNRSLGDLLHC 1001

Query: 1427 LVGDNVKTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRA 1606
            LVGD    WD+ L  AEF +N+++NRSTG  PF+VV+G  PR PVDL+ALP  +R    A
Sbjct: 1002 LVGDKPGNWDLLLPVAEFTYNNSVNRSTGKSPFEVVHGFSPRSPVDLVALPVAARSSDSA 1061

Query: 1607 TDFMANLQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHK 1786
            T F  +++Q+H      +      YK AA++ RR  EF  GD V   +  +R+P H + K
Sbjct: 1062 TSFAEHIRQLHDDVRRQISMHTDTYKLAANAHRRQQEFREGDFVMVRVCPERFPKHSFKK 1121

Query: 1787 LASRKIGPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTS 1930
            L +R +GP  I++K+  NAY + LP+++  S +FNV  L P+R GT S
Sbjct: 1122 LHARSMGPYRIIKKLGSNAYLIELPANMHISPIFNVSDLSPYR-GTFS 1168


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  672 bits (1734), Expect = 0.0
 Identities = 332/661 (50%), Positives = 438/661 (66%), Gaps = 5/661 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++K+  I+ WPTP +++ VRSF GLA FY RF+  F
Sbjct: 885  KCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRFVQDF 944

Query: 200  SSIMAPITDCMR-GTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+    + G  F W  + E AF  +K KLT +P+L LPDF+  FEL CDAS +G+
Sbjct: 945  STIAAPLNALTKKGVPFTWGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGL 1004

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q  + VAYFSEKL+GP   YSTYD E YA+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 1005 GGVLLQEGKLVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESL 1064

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQ  ++ RHA W  F++ F +V++HK G  N +A+ALSRR++LLT +   I G +T
Sbjct: 1065 KHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKIFGLET 1124

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  Y  D  F  VL     G T + F ++DGF+FR  +LCIP  S+R  L+ E H    
Sbjct: 1125 IKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQEAHGGGL 1184

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +T D++   FFWP +RRDVG+FV RC  CQ AK      GLY PLPVP+ PW 
Sbjct: 1185 MGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWE 1244

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT+RG DSIFVVVDRFSKM HFIPC +T DA H+A LFF+EI RLHG+P
Sbjct: 1245 DISMDFVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFREIVRLHGVP 1304

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRDT+FLSHFWR+LW    T+L FS+  HPQTDGQ EVVNR+L  +LR ++  N+
Sbjct: 1305 NTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQIEVVNRTLSTMLRAVLKKNI 1364

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA N +L+ +T  CPFQ+VY ++PR P+DLM LPS  +L   A      
Sbjct: 1365 KMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDLMPLPSSEKLNFDAKQRAEL 1424

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   NA+YK A D  RR + F  GDLVW  L K+R+P     KL  R  
Sbjct: 1425 MLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRAD 1484

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GP +++ KIN NAY++ LP+    S  FNV  L P+      G+E   +SR  + Q+GE+
Sbjct: 1485 GPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPY-----LGEEDELESRTTQMQEGED 1539

Query: 1985 D 1987
            D
Sbjct: 1540 D 1540


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  674 bits (1740), Expect = 0.0
 Identities = 334/663 (50%), Positives = 442/663 (66%), Gaps = 5/663 (0%)
 Frame = +2

Query: 20   KCIFFTDRVLFLGYVISAAGISMDESKIAVIREWPTPTSMTAVRSFHGLASFYRRFIPHF 199
            KC F TDRV FLGYV++  GI +D++KI  I  WP P ++T VRSF GLA FYRRF+  F
Sbjct: 962  KCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRFVRDF 1021

Query: 200  SSIMAPITDCMR-GTTFVWTAAAETAFLTIKQKLTTSPVLILPDFSVPFELHCDASKVGI 376
            S+I AP+ +  +    + W  A E AF  +K KLT +P+L LPDF+  FEL CDAS +G+
Sbjct: 1022 STIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDASGIGL 1081

Query: 377  GAVLSQNSRPVAYFSEKLTGPRTRYSTYDVEFYAVVRAVRHWRHYLFQREFVLYTDHDSL 556
            G VL Q+ +PVAYFSEKL+GP   YSTYD E YA+VR +  W+HYL+ +EFV+++DH+SL
Sbjct: 1082 GGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESL 1141

Query: 557  KYISSQANVSARHASWAAFLQQFTFVLRHKSGASNRVADALSRRHSLLTDMRVAIIGFDT 736
            K+I SQA ++ RHA W  F++ F +V++ K G  N +ADALSRR+++L+ +   I G +T
Sbjct: 1142 KHIKSQAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKIFGLET 1201

Query: 737  FRSLYVTDHFFGKVLSSVHAGTTTD-FTMSDGFLFRGTRLCIPDCSLRSKLISELHN--- 904
             +  YV D  F  VL +   G T + F +++GF+FR  +LCIP  S+R  L+ E H    
Sbjct: 1202 IKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHGGGL 1261

Query: 905  TGHVGRDRTLDLVQRQFFWPSLRRDVGKFVERCRVCQLAKGTASNAGLYRPLPVPSEPWS 1084
             GH G  +  D++   FFWP +RRDV +FV RC  CQ AK   +  GLY PLPVPS PW 
Sbjct: 1262 MGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWE 1321

Query: 1085 AVSMDFVLGLPRTQRGHDSIFVVVDRFSKMTHFIPCKRTTDALHVAQLFFKEIYRLHGLP 1264
             +SMDFVLGLPRT++G DSIFVVVDRFSKM HFIPC ++ DA +VA LFF+EI RLHG+P
Sbjct: 1322 DISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREIIRLHGVP 1381

Query: 1265 VSIVSDRDTRFLSHFWRSLWRSANTELHFSSAYHPQTDGQTEVVNRSLGNLLRCLVGDNV 1444
             +IVSDRD +FLSHFWR LW    T+L FS+  HPQTDGQTEVVNRSL  +LR ++  N+
Sbjct: 1382 NTIVSDRDAKFLSHFWRCLWAKLGTKLLFSTTCHPQTDGQTEVVNRSLSTMLRAVLKTNL 1441

Query: 1445 KTWDIKLSQAEFAHNSALNRSTGFCPFQVVYGIIPRGPVDLMALPSPSRLEGRATDFMAN 1624
            K W+  L   EFA+N +L+ +T  CPF++VYG +PR P+DL+ +PS  ++   A +    
Sbjct: 1442 KLWEECLPHIEFAYNRSLHSTTKMCPFEIVYGFLPRAPIDLLPIPSSEKVNFDAKERAEL 1501

Query: 1625 LQQIHTATHAHLISSNARYKAAADSKRRHVEFSVGDLVWAVLTKDRYPAHEYHKLASRKI 1804
            + ++H  T  ++   NARYK A D  R+HV F+ GDLVW  L KDR+P     KL  R  
Sbjct: 1502 ILKMHELTKENIERMNARYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAG 1561

Query: 1805 GPVEIVEKINPNAYRLRLPSHIRTSDVFNVKHLVPFRDGTTSGDETHDDSRANRFQDGEN 1984
            GP +++EKIN NAYRL LP     S  FN+  L P+      G+E    SR    Q+GE+
Sbjct: 1562 GPFKVLEKINDNAYRLELPXDFGVSPTFNIADLKPY-----LGEEDELPSRTTSVQEGED 1616

Query: 1985 DGD 1993
            D D
Sbjct: 1617 DED 1619