BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00046668
         (862 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   223   2e-65
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo...   207   6e-60
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   214   1e-59
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   207   6e-59
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   207   9e-58
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo...   199   2e-56
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   204   4e-56
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   202   3e-55
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...   189   1e-54
gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo...   192   6e-54
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   197   8e-54
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   197   1e-53
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892...   197   1e-53
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    195   7e-53
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   195   7e-53
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        194   2e-52
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   194   2e-52
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   193   3e-52
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...   192   5e-52
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   191   2e-51

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Erythranthe guttata]
          Length = 598

 Score =  223 bits (569), Expect = 2e-65
 Identities = 117/230 (50%), Positives = 150/230 (65%), Gaps = 1/230 (0%)
 Frame = -3

Query: 860 VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIV 681
           VKGYRLW +G+ G+K IISRDV+FNE  FPC   P+   V    +TPNEVE         
Sbjct: 405 VKGYRLWLKGDFGYKIIISRDVIFNESGFPCLAVPN---VVIPQSTPNEVE--------- 452

Query: 680 VPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELNDYVL 501
                     LP+  +D    + D    +N+ D   E P+V           D+L+DY L
Sbjct: 453 ---------QLPIKSDD----VSDSELSENLQDQTVELPNV-----------DDLSDYQL 488

Query: 500 TRDRTRR-HVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNEEM 324
            RDR RR HVR P  F DFH+ S+VF+VFES+DG+EPK++ +A+ S +ST+WLN+MN+EM
Sbjct: 489 ARDRPRREHVRKPKHFDDFHLASHVFNVFESLDGNEPKSYKDALKSDKSTEWLNSMNDEM 548

Query: 323 NSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGVRFKARLVAKGFTQK 174
           NSLHVN TW LVPKP NCSVVDC WL+K+K E + +++KARLVAKGFTQK
Sbjct: 549 NSLHVNQTWELVPKPVNCSVVDCNWLFKVKNEVDSIKYKARLVAKGFTQK 598


>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 516

 Score =  207 bits (527), Expect = 6e-60
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 8/294 (2%)
 Frame = -3

Query: 860 VKGYRLWNRGEPGFKT-IISRDVLFNELEFPCFVHPSPQTV---SENDTTPNEVELSNVS 693
           VKGYRLW   EPG+K  +ISRDV+FNE+E    V PS   +   S++ T   EVE + ++
Sbjct: 219 VKGYRLWCL-EPGYKKCLISRDVVFNEIEMANLVKPSKVEIHEKSQDQTIKIEVEFTVIT 277

Query: 692 PNIVVPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELN 513
                                     +  TQ    H +  E  D              + 
Sbjct: 278 ------------------------EAKAATQRQQ-HILQQELDD----------EERSIQ 302

Query: 512 DYVLTRDRTRRHVRVPNKFADFHMTSYVFSV-FESIDGSEPKTFSEAMNSAESTKWLNAM 336
            Y L RDR RR  + P ++    + S+ F+V  +  D  EPK++SEAM S +   WL AM
Sbjct: 303 SYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLKAM 362

Query: 335 NEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGI 165
            EEM SL  N TWILV KP    +V  KW++K K+   G+   RFK RLVA+GFTQ+EG+
Sbjct: 363 KEEMGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQREGL 422

Query: 164 DYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
           DY EIF+PVVK  ++R++LA+V  FD EL+Q+DV+TAFLHG+LDE I+MKQP+G
Sbjct: 423 DYKEIFSPVVKHNSIRMILAMVTHFDMELEQMDVRTAFLHGELDETIYMKQPDG 476


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  214 bits (544), Expect = 1e-59
 Identities = 124/297 (41%), Positives = 171/297 (57%), Gaps = 12/297 (4%)
 Frame = -3

Query: 857  KGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPN--------EVELS 702
            KGYRLW       + I+SRDV FNE      +    Q+   + +T N        E+EL 
Sbjct: 383  KGYRLWCSESKSRRLILSRDVTFNE---DALLSSGKQSSVSSSSTNNLQGTSEKVELELK 439

Query: 701  NVSPNIVVPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHD 522
            +V+PN+ VP+ S                    T   ++ D  ++ P    E         
Sbjct: 440  SVAPNVDVPSSS--------------------TTESSIDDHGDDHPIQQQE--------- 470

Query: 521  ELNDYVLTRDRTRRHVRVPNKFADFHMTSYVFSVFESI-DGSEPKTFSEAMNSAESTKWL 345
               +Y + RDRTRR +++P ++ D ++T+Y  S+ + + D  EP ++SEA++  +S KWL
Sbjct: 471  ---EYNIARDRTRRQIKLPARYTDDNLTAYALSIAQEVNDDVEPASYSEAVSCVDSAKWL 527

Query: 344  NAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQK 174
             AMNEE+ SLH NNTW L   P     + CKW+YK K    GV   R KARLV KGF QK
Sbjct: 528  VAMNEEIESLHKNNTWNLTKLPKGKRPLRCKWIYKKKDGIPGVEDPRCKARLVVKGFYQK 587

Query: 173  EGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            EGID+ EIF+PVV+  ++RI+LA VA FD EL+QLDVKTAFLHG+L+E+I+M QPEG
Sbjct: 588  EGIDFNEIFSPVVRHTSIRILLAFVALFDLELEQLDVKTAFLHGELEEEIYMDQPEG 644


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 634

 Score =  207 bits (527), Expect = 6e-59
 Identities = 124/294 (42%), Positives = 167/294 (56%), Gaps = 8/294 (2%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKT-IISRDVLFNELEFPCFVHPSPQTV---SENDTTPNEVELSNVS 693
            VKGYRLW   EPG+K  +ISRDV+FNE+E    V PS   +   S++ T   EVE + ++
Sbjct: 337  VKGYRLWCL-EPGYKKCLISRDVVFNEIEMANLVKPSKVEIHEKSQDQTIKIEVEFTVIT 395

Query: 692  PNIVVPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELN 513
                                      +  TQ    H +  E  D              + 
Sbjct: 396  ------------------------EAKAATQRQQ-HILQQELDD----------EERSIQ 420

Query: 512  DYVLTRDRTRRHVRVPNKFADFHMTSYVFSV-FESIDGSEPKTFSEAMNSAESTKWLNAM 336
             Y L RDR RR  + P ++    + S+ F+V  +  D  EPK++SEAM S +   WL AM
Sbjct: 421  SYSLARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLKAM 480

Query: 335  NEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGI 165
             EEM SL  N TWILV KP    +V  KW++K K+   G+   RFK RLVA+GFTQ+EG+
Sbjct: 481  KEEMGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQREGL 540

Query: 164  DYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            DY EIF+PVVK  ++R++LA+V  FD EL+Q+DV+TAFLHG+LDE I+MKQP+G
Sbjct: 541  DYKEIFSPVVKHNSIRMILAMVTHFDMELEQMDVRTAFLHGELDETIYMKQPDG 594


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  207 bits (527), Expect = 9e-58
 Identities = 115/290 (39%), Positives = 168/290 (57%), Gaps = 5/290 (1%)
 Frame = -3

Query: 857  KGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIVV 678
            KGY++W   E   K +ISR+V+F E             V   D    E  +     +I  
Sbjct: 380  KGYKVWLLEEQ--KCVISRNVIFQE------------EVVYKDLNDKETVVKK--EDIRT 423

Query: 677  PADSHINDALPVNVNDND--VHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELNDYV 504
              D+H+  +    V+D     HIE+  + D   +     P+   E +P  ++   L +Y 
Sbjct: 424  QTDNHLVISKTKEVSDQGGVTHIEECEESDENDEQE---PETVNETDPTVESEGSLANYQ 480

Query: 503  LTRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNEEM 324
            L +DR RR +  P +F +    ++   V ES+   EP+++ EA    E  KW NA +EEM
Sbjct: 481  LAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEWLKWKNATHEEM 540

Query: 323  NSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGIDYTE 153
            +SL  N TW LV KP N  ++ C+WL+K+K    GV   RFKARLVAKG+TQ+EG+DY E
Sbjct: 541  DSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQREGVDYQE 600

Query: 152  IFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            IFAPVVK  ++R+++++V   D EL+Q+DVKTAFLHGDL+E+++M+QPEG
Sbjct: 601  IFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLHGDLEEELYMEQPEG 650


>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 595

 Score =  199 bits (507), Expect = 2e-56
 Identities = 115/292 (39%), Positives = 162/292 (55%), Gaps = 6/292 (2%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPS---PQTVSENDTTPNEVELSNVSP 690
            VKGYR+W+  E   K I+SRDV+F+E       HP    P T + N   P   ++ ++S 
Sbjct: 304  VKGYRIWSPSEK--KVILSRDVIFDESHL---FHPKLEVPITATHNSHPPQVGKVESISE 358

Query: 689  NIVVPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELND 510
                                 D  + D     +  +  +E    N  ++    +  +LN 
Sbjct: 359  KT------------------EDKDLLDKFSEASQEEEQSENSSANESHQNAEPDSIQLNP 400

Query: 509  YVLTRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNE 330
             +    + +R ++ P ++    M +Y     E ID  EP T+ EA++  E+ KW+ AM E
Sbjct: 401  GI--SQKPKRVIKPPERYGFEDMATYALHAAEEIDSDEPTTYKEAISHPEAEKWILAMRE 458

Query: 329  EMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQ---ESEGVRFKARLVAKGFTQKEGIDY 159
            EM SL+ N TW LV  P    VV CKW+YK K    E E +R+KARLVAKGF+QKEG+D+
Sbjct: 459  EMESLYKNQTWKLVELPKGRHVVGCKWIYKKKSIFSEKEEIRYKARLVAKGFSQKEGVDF 518

Query: 158  TEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
             EIF+PVV+  ++R++LA+VA  D EL+QLDVKTAFLHG L+E I MKQPEG
Sbjct: 519  NEIFSPVVRHTSIRVLLAIVANQDMELEQLDVKTAFLHGRLEENILMKQPEG 570


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  204 bits (519), Expect = 4e-56
 Identities = 126/292 (43%), Positives = 164/292 (56%), Gaps = 7/292 (2%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSEN----DTTPNEVELSNVS 693
            VKGY+LW   +   K IISRDV FNE +       S QT +++    D    EVE   + 
Sbjct: 649  VKGYKLWIETQGKGKCIISRDVTFNEQDM------SKQTPAKDVEGLDQLQFEVEHETLQ 702

Query: 692  PNIVVPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELN 513
            P       S                     Q + VH+          +NEP       L 
Sbjct: 703  PEKSKETSSKT------------------AQEEIVHER---------QNEPTQG----LE 731

Query: 512  DYVLTRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMN 333
             Y L RDR +R V+ P ++    MT++  SV E I   EPKT+ EA+NS E+ +W+ A+ 
Sbjct: 732  SYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQ 791

Query: 332  EEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQES---EGVRFKARLVAKGFTQKEGID 162
            EEM+SL  N TW LV KP +  VV  KW++K KQ +   E  R+KARLVAKGF+QKEG+D
Sbjct: 792  EEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVD 851

Query: 161  YTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPE 6
            Y EIF+PVVK  ++R++LA VA  D EL QLDVKTAFLHG+LDE I+M+ PE
Sbjct: 852  YNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPE 903


>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103833265
            [Brassica rapa]
          Length = 3353

 Score =  202 bits (513), Expect = 3e-55
 Identities = 122/301 (40%), Positives = 175/301 (58%), Gaps = 15/301 (4%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQT------VSENDTTPNEVELSN 699
            VKGYR+W   +   K   SR+V+F E E       +  T      V  N    N  ++ +
Sbjct: 610  VKGYRVWIPED--LKCTTSRNVVFREDELYKDTQVNKTTENGSDSVDTNQKAGNPKKIVS 667

Query: 698  VSPNIVV----PADSHINDALPVNVNDNDVHIEDD-TQHDNVHDMHNEFPDVNTENEPVA 534
             SP+++     P   H   + P N + +    ED  +  ++  D  +E      ENE   
Sbjct: 668  FSPSLIRGPSGPNYEHGETSDPGNTSVSQQDSEDQGSSSESESDDESEGLTFVEENE--- 724

Query: 533  DNHDELNDYVLTRDRTRR-HVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAES 357
             +   +  Y+L RDR RR +V+ P+++ D ++ +Y  SV + I+  EPK+F EA  S + 
Sbjct: 725  -SESSIEHYMLARDRVRRQNVKPPSRYEDANLVAYALSVADDIEREEPKSFEEAKKSKDW 783

Query: 356  TKWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKG 186
              W NA +EEM+SL+ N+TW L+ +P     V CKW++K K    GV   R K RLVAKG
Sbjct: 784  KHWNNAADEEMDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKG 843

Query: 185  FTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPE 6
            F+QKEGIDY E+F+PVVK V++R+ML++V   D+EL+QLDVKTAFLHG+LDE+I M QPE
Sbjct: 844  FSQKEGIDYNEVFSPVVKHVSIRLMLSIVVNRDYELEQLDVKTAFLHGNLDERILMDQPE 903

Query: 5    G 3
            G
Sbjct: 904  G 904



 Score =  202 bits (513), Expect = 3e-55
 Identities = 122/301 (40%), Positives = 175/301 (58%), Gaps = 15/301 (4%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQT------VSENDTTPNEVELSN 699
            VKGYR+W   +   K   SR+V+F E E       +  T      V  N    N  ++ +
Sbjct: 1309 VKGYRVWIPED--LKCTTSRNVVFREDELYKDTQVNKTTENGSDSVDTNQKAGNPKKIVS 1366

Query: 698  VSPNIVV----PADSHINDALPVNVNDNDVHIEDD-TQHDNVHDMHNEFPDVNTENEPVA 534
             SP+++     P   H   + P N + +    ED  +  ++  D  +E      ENE   
Sbjct: 1367 FSPSLIRGPSGPNYEHGETSDPGNTSVSQQDSEDQGSSSESESDDESEGLTFVEENE--- 1423

Query: 533  DNHDELNDYVLTRDRTRR-HVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAES 357
             +   +  Y+L RDR RR +V+ P+++ D ++ +Y  SV + I+  EPK+F EA  S + 
Sbjct: 1424 -SESSIEHYMLARDRVRRQNVKPPSRYEDANLVAYALSVADDIEREEPKSFEEAKKSKDW 1482

Query: 356  TKWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKG 186
              W NA +EEM+SL+ N+TW L+ +P     V CKW++K K    GV   R K RLVAKG
Sbjct: 1483 KHWNNAADEEMDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKG 1542

Query: 185  FTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPE 6
            F+QKEGIDY E+F+PVVK V++R+ML++V   D+EL+QLDVKTAFLHG+LDE+I M QPE
Sbjct: 1543 FSQKEGIDYNEVFSPVVKHVSIRLMLSIVVNRDYELEQLDVKTAFLHGNLDERILMDQPE 1602

Query: 5    G 3
            G
Sbjct: 1603 G 1603



 Score =  202 bits (513), Expect = 3e-55
 Identities = 122/301 (40%), Positives = 175/301 (58%), Gaps = 15/301 (4%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQT------VSENDTTPNEVELSN 699
            VKGYR+W   +   K   SR+V+F E E       +  T      V  N    N  ++ +
Sbjct: 2685 VKGYRVWIPED--LKCTTSRNVVFREDELYKDTQVNKTTENGSDSVDTNQKAGNPKKIVS 2742

Query: 698  VSPNIVV----PADSHINDALPVNVNDNDVHIEDD-TQHDNVHDMHNEFPDVNTENEPVA 534
             SP+++     P   H   + P N + +    ED  +  ++  D  +E      ENE   
Sbjct: 2743 FSPSLIRGPSGPNYEHGETSDPGNTSVSQQDSEDQGSSSESESDDESEGLTFVEENE--- 2799

Query: 533  DNHDELNDYVLTRDRTRR-HVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAES 357
             +   +  Y+L RDR RR +V+ P+++ D ++ +Y  SV + I+  EPK+F EA  S + 
Sbjct: 2800 -SESSIEHYMLARDRVRRQNVKPPSRYEDANLVAYALSVADDIEREEPKSFEEAKKSKDW 2858

Query: 356  TKWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKG 186
              W NA +EEM+SL+ N+TW L+ +P     V CKW++K K    GV   R K RLVAKG
Sbjct: 2859 KHWNNAADEEMDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKG 2918

Query: 185  FTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPE 6
            F+QKEGIDY E+F+PVVK V++R+ML++V   D+EL+QLDVKTAFLHG+LDE+I M QPE
Sbjct: 2919 FSQKEGIDYNEVFSPVVKHVSIRLMLSIVVNRDYELEQLDVKTAFLHGNLDERILMDQPE 2978

Query: 5    G 3
            G
Sbjct: 2979 G 2979


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score =  189 bits (480), Expect = 1e-54
 Identities = 108/290 (37%), Positives = 169/290 (58%), Gaps = 4/290 (1%)
 Frame = -3

Query: 860 VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIV 681
           +KGYR+W   E   K   SR+V+FNE+E          T+S  D   +  +L + S    
Sbjct: 81  IKGYRVWLPEEG--KCTTSRNVVFNEIEL------YKGTLSSPDGRTDYYDLEDSSSQGG 132

Query: 680 VPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELNDYVL 501
             + S          +++  ++E+   ++ V    NE                 L+DY+L
Sbjct: 133 ETSSSS---------SESSENLEESETNEEVDGSENE---------------QSLDDYLL 168

Query: 500 TRDRTRR-HVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNEEM 324
            R+R RR ++R P++F D    +Y  +  E ++  EPK++ EAM  ++  +W +AM EEM
Sbjct: 169 ARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEPKSYEEAMKRSKRKQWESAMKEEM 228

Query: 323 NSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGIDYTE 153
           +S   ++TW L+ KP    ++ CKW++K+K    G+   R+K RLVAKGF+Q+EGIDY E
Sbjct: 229 DSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGLEKQRYKVRLVAKGFSQQEGIDYNE 288

Query: 152 IFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
           +F+ VVK V++R+ML+LV   D+EL+Q+DVKT+FLHG+L+E+I M QPEG
Sbjct: 289 VFSLVVKHVSIRLMLSLVVNMDYELEQMDVKTSFLHGNLEERILMSQPEG 338


>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 530

 Score =  192 bits (487), Expect = 6e-54
 Identities = 120/301 (39%), Positives = 169/301 (56%), Gaps = 15/301 (4%)
 Frame = -3

Query: 860 VKGYRLW----NRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVS 693
           VKGYRLW    NR +   K +ISRDV FNE                +     + E+ N++
Sbjct: 70  VKGYRLWCTENNRTK---KIVISRDVTFNE----------------SAMFGQKEEVENLA 110

Query: 692 PNIVVPADSHINDALPVNVNDNDVH--IEDDTQHDNVHDMHNEFPDVNTENEPVADNHDE 519
            N                  +  VH  +E + +  N  +++      N + EP +     
Sbjct: 111 GN---------------KSTNKGVHQKVEFEVEDSNKENLNPVEQSSNVQEEPQS----- 150

Query: 518 LNDYVLTRDRTRRHVRVPNKFADF------HMTSYVFSVFESIDGSEPKTFSEAMNSAES 357
               + TR RTRR +R P ++AD       +  +Y   V E++D  EPK++ EA+ S E+
Sbjct: 151 ----IATR-RTRREIRKPTRYADVTNVVDTNSVAYALLVGENLDSDEPKSYKEAIQSKEA 205

Query: 356 TKWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKG 186
           +KWL AM+EEM SL  N TW LVP P     V CKW+ K K+   GV   RFKARLVAKG
Sbjct: 206 SKWLIAMDEEMQSLKKNQTWELVPLPRGVKPVGCKWVLKRKEGIPGVEPSRFKARLVAKG 265

Query: 185 FTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPE 6
           F+QKEGIDY E+F+PVVK  T+R++LA+V+  D +L+QL+VK AFLHG+L+E+++M QP+
Sbjct: 266 FSQKEGIDYHEVFSPVVKHKTIRVLLAMVSALDMKLEQLNVKIAFLHGNLEEQVYMSQPD 325

Query: 5   G 3
           G
Sbjct: 326 G 326


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  197 bits (502), Expect = 8e-54
 Identities = 114/291 (39%), Positives = 166/291 (57%), Gaps = 5/291 (1%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIV 681
            VK +++W   +   K ++SRD++F E +         + + +ND +  + +L+ V   ++
Sbjct: 684  VKRFKVWLLEDR--KCVVSRDIVFQENQMY-------KELQKNDMSEEDKQLTEVERTLI 734

Query: 680  VPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELNDYVL 501
               +   +D       DN    +  T      D   E  D          + D L +Y+L
Sbjct: 735  ELKNLSADDENQSEGGDNSNQEQASTTRSASKDKQVEETD---------SDDDCLENYLL 785

Query: 500  TRDRTRRHVRVPNKFA--DFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNEE 327
             RDR RR +R P +F   D  +  +  ++ E  +  EP+T+ EAM S E  KW  A  EE
Sbjct: 786  ARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEE 845

Query: 326  MNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGIDYT 156
            M+S+  N+TW ++ KP    V+ CKW++K K    GV   R+KARLVAKGF+Q+EGIDY 
Sbjct: 846  MDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQ 905

Query: 155  EIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            EIF+PVVK V++R +L++V QFD EL+QLDVKTAFLHG+LDE I M QPEG
Sbjct: 906  EIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEG 956


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  197 bits (501), Expect = 1e-53
 Identities = 116/295 (39%), Positives = 171/295 (57%), Gaps = 9/295 (3%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIV 681
            +KGYR+W   E   K   SR+V+FNE E          T+S  D    E E         
Sbjct: 580  IKGYRVWLPKEG--KCTTSRNVVFNETEL------YKDTLSSADERKEEAEKEYKKLKKA 631

Query: 680  VPADSHINDAL---PVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPV--ADNHDEL 516
                S  +D L     +  D D       +  +     +E  + +  NE V  ++N   L
Sbjct: 632  RKRVSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENLEESEMNEEVVGSENEQSL 691

Query: 515  NDYVLTRDRTRR-HVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNA 339
            +DY+L RD  RR ++R P++F D    +Y  +  E ++  EPK++ EA+ S++  +W NA
Sbjct: 692  DDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENA 751

Query: 338  MNEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEG 168
            M EEM+S   ++TW L+ KP    ++ CKW++K+K    GV   R+KARLVAKGF+Q+EG
Sbjct: 752  MKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEG 811

Query: 167  IDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            IDY E+F+ VVK V++R+ML+L+   D+EL+Q+DVKTAFLHG+L+E+I M QPEG
Sbjct: 812  IDYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLHGNLEERILMSQPEG 866


>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
            vulgaris]
          Length = 1947

 Score =  197 bits (501), Expect = 1e-53
 Identities = 124/292 (42%), Positives = 168/292 (57%), Gaps = 6/292 (2%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNE-LEFPCFVHPSPQTVSENDTTPNEVELSNVSPNI 684
            VKGYR+W+  E   + I+SRDV F+E   F     P+  T    D    +V   + +P +
Sbjct: 758  VKGYRIWSPSEG--RVILSRDVTFDENTMFVSANKPAGDTDESTDEGSEQVVAPDPTPQV 815

Query: 683  VVPA-DSHINDALP-VNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELND 510
                 D+    + P V  +  DV + D+T   +V   H E   V  +  P       L +
Sbjct: 816  RTQGKDNEAPVSSPIVETSQRDVAVVDETA--DVESDHEETV-VEGQKRP-RKKTQRLIE 871

Query: 509  YVLTRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNE 330
             +  R+   R+  V        M  Y   V E I+  EP ++ EA++S ES KWL AM+E
Sbjct: 872  QIEGRNVPGRNCCVEE------MIGYALHVAEDIESPEPMSYKEAVSSNESAKWLVAMSE 925

Query: 329  EMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQ---ESEGVRFKARLVAKGFTQKEGIDY 159
            EM SLH N TW LV  P    VV CKW++K K+   E E VR+KARLVAKGF+Q+EG+DY
Sbjct: 926  EMESLHKNQTWELVRIPQGRKVVGCKWVFKRKEGTSEGESVRYKARLVAKGFSQREGVDY 985

Query: 158  TEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
             EIF+PVV+  ++R++LA+VA FD EL+QLDVKTAFLHG+L+E I M QPEG
Sbjct: 986  NEIFSPVVRHTSIRVLLAMVAHFDLELEQLDVKTAFLHGELEEDILMSQPEG 1037


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  195 bits (495), Expect = 7e-53
 Identities = 110/289 (38%), Positives = 170/289 (58%), Gaps = 4/289 (1%)
 Frame = -3

Query: 857  KGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIVV 678
            KGY++W   E   K +ISR+VLF+E            T+ +     +E E ++ S + ++
Sbjct: 707  KGYKIWLLEE--HKCVISRNVLFHEESV------YKDTMKKERVVESEAEPASHSKSTLI 758

Query: 677  PADSHINDALPVNVNDNDV-HIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELNDYVL 501
               +      P N+N  +V  + D+ + D   +   E P+   E  P       L +Y L
Sbjct: 759  KVKT------PGNLNSGEVIQVSDEEESDESVEEEQE-PETQVEL-PETQTTSSLANYQL 810

Query: 500  TRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNEEMN 321
             RDR RR +  P +F +    ++     E++   EP+++ EA +  E  KW  A +EEM+
Sbjct: 811  ARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEMD 870

Query: 320  SLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGIDYTEI 150
            SL  N TW+LV KP N  ++ C+WL+K+K  S GV   R+KA+LVAKG+T +EG+DY EI
Sbjct: 871  SLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREGVDYQEI 930

Query: 149  FAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            FA VVK  ++RI++++V   D EL+Q+DVKTAFLHG+L+E+++M+QPEG
Sbjct: 931  FALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEG 979


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  195 bits (495), Expect = 7e-53
 Identities = 112/290 (38%), Positives = 169/290 (58%), Gaps = 4/290 (1%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIV 681
            VKG+R+W+  E   + I+SR+V+F+E      +   P T SE  +   +VE         
Sbjct: 669  VKGFRIWSPAEK--RVIMSRNVVFDESPLLRTI-VKPTTTSETGSLDKQVEFQ------- 718

Query: 680  VPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELNDYVL 501
                          V  N+  +++  + D       + P    E+ P +D H  +     
Sbjct: 719  --------------VIQNESDLKEPEEEDQEPQTETDIP----ESMP-SDIHQSI----- 754

Query: 500  TRDRTRR-HVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNEEM 324
             +DR RR  VR P ++    M  Y   V E +D SEP T+ EA+ S++S KW  AM +EM
Sbjct: 755  AQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEM 814

Query: 323  NSLHVNNTWILVPKPANCSVVDCKWLYKIKQ---ESEGVRFKARLVAKGFTQKEGIDYTE 153
             SLH N TW LV +P+   ++ CKW++K K+    +EGV++KAR+VA+GF Q+EG+DY E
Sbjct: 815  ESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNE 874

Query: 152  IFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            IF+PVV+  ++R++LA+VA  + EL+QLDVKTAFLHG+L+E+I+M QP+G
Sbjct: 875  IFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDG 924


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  194 bits (492), Expect = 2e-52
 Identities = 112/290 (38%), Positives = 167/290 (57%), Gaps = 4/290 (1%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIV 681
            VKGY++W + +   K I+SRDV+F+E            +V   ++  ++  L +      
Sbjct: 681  VKGYKIWCKDQG--KCIVSRDVVFHE------------SVLLKESAEHDAGLQD------ 720

Query: 680  VPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVAD-NHDELNDYV 504
             PA +  + +    VN   V +  D   +      +E     +E   V++    +L +Y 
Sbjct: 721  NPAANKRSGSETSKVN---VELLTDKSSEKEAASDDERATAESEEHEVSELPQADLQNYQ 777

Query: 503  LTRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNEEM 324
            L RDR RR VR P ++    + +Y     + +   EP  FSEAM S    KWL AM +EM
Sbjct: 778  LARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEM 837

Query: 323  NSLHVNNTWILVPKPANCSVVDCKWLYKIKQ---ESEGVRFKARLVAKGFTQKEGIDYTE 153
             SL  N TW L+P P N  +++CKW++K  +   + E  ++KARLVA+GFTQ+EG+D+ E
Sbjct: 838  ESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNE 897

Query: 152  IFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            IF+PVVK  ++RI+LA+VA  D EL+Q+DVKTAFLHG+L+E+I M QPEG
Sbjct: 898  IFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEG 947


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  194 bits (492), Expect = 2e-52
 Identities = 118/302 (39%), Positives = 164/302 (54%), Gaps = 16/302 (5%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNEL-------EFPCFVHPSPQTVSENDTTPNEVELS 702
            VKGYRLW   +   K IISRDV F+E        EF      S   +  N     EV+  
Sbjct: 790  VKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSKTDLGANQKVEFEVD-- 847

Query: 701  NVSPNIVVPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHD 522
                    P ++ ++D                                 +E +PV D +D
Sbjct: 848  -------APMENGVDDT--------------------------------SEEQPVIDQND 868

Query: 521  ELNDYVLTRDRTRRHVRVPNKFADF------HMTSYVFSVFESIDGSEPKTFSEAMNSAE 360
              +   +   R RR +R P ++ D       +  ++  +V E I   EP+++ EAM S +
Sbjct: 869  SQS---IAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKD 925

Query: 359  STKWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQ---ESEGVRFKARLVAK 189
            S KWL++M++EM SL  N TW LVP P     VDCKWL+KIK      E  ++K+RLVAK
Sbjct: 926  SKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAK 985

Query: 188  GFTQKEGIDYTEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQP 9
            GF+QKEGIDY E+F+PVVK  ++R++LA+V+ F+ EL QLDVKTAFLHG+L+E+I+MKQP
Sbjct: 986  GFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQP 1045

Query: 8    EG 3
            EG
Sbjct: 1046 EG 1047


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  193 bits (490), Expect = 3e-52
 Identities = 110/292 (37%), Positives = 164/292 (56%), Gaps = 7/292 (2%)
 Frame = -3

Query: 857  KGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIVV 678
            KGY++W   E   K +ISR+V+F E            +V   D    E +  N++     
Sbjct: 697  KGYKVWLLEEE--KCVISRNVVFQE------------SVVYRDLKVKEDDTDNLNQKETT 742

Query: 677  PADSHINDALPVNVNDNDVHIEDD----TQHDNVHDMHNEFPDVNTENEPVADNHDELND 510
             ++   N     + +   + ++ D    T+ +   D   E     +E          L  
Sbjct: 743  SSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVE--YSEKTQETPKRTGLTT 800

Query: 509  YVLTRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNE 330
            Y L RDR RR++  P +F +    ++   V E+    EP+++ EAM S +  KW  A ++
Sbjct: 801  YKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHD 860

Query: 329  EMNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGIDY 159
            EM+SL  N TW LV KP +  ++ C+WL+K+K    GV   RFKARLVAKG+TQ+EG+DY
Sbjct: 861  EMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDY 920

Query: 158  TEIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
             EIFAPVVK V++RI+++LV   D EL+Q+DVKT FLHGDL+E+++M+QPEG
Sbjct: 921  QEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEG 972


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
            (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
            unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score =  192 bits (488), Expect = 5e-52
 Identities = 110/289 (38%), Positives = 169/289 (58%), Gaps = 4/289 (1%)
 Frame = -3

Query: 857  KGYRLWNRGEPGFKTIISRDVLFNELEFPCFVHPSPQTVSENDTTPNEVELSNVSPNIVV 678
            KGY++W   E   K +ISR+VLF+E      V+    T+ +     +E E ++ S + ++
Sbjct: 607  KGYKIWLLEEQ--KCVISRNVLFHEE----LVYKD--TIEKERVVESEAEPASHSKSTLI 658

Query: 677  PADSHINDALPVNVNDNDV-HIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELNDYVL 501
               +      P N+N   V  + D+ + D   D   E P+   E  P       L +Y L
Sbjct: 659  KMKT------PGNLNSGGVIQVSDEEESDESVDEEQE-PEPQVEL-PETQTTSSLANYQL 710

Query: 500  TRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGSEPKTFSEAMNSAESTKWLNAMNEEMN 321
             RDR RR +  P +F +    ++     E++   EP+++ EA +  E  KW  A +EE N
Sbjct: 711  VRDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEKN 770

Query: 320  SLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGIDYTEI 150
            SL  N TW+LV KP +  ++ C+WL+K+K    GV   R+KARLVAKG+TQ+EG+DY EI
Sbjct: 771  SLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEI 830

Query: 149  FAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            FAPV K  ++RI++++V   D EL+Q+DVKT FLHG+L+E+++M+QP+G
Sbjct: 831  FAPVAKHTSIRILMSVVVDQDLELEQMDVKTTFLHGELEEELYMEQPDG 879


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  191 bits (484), Expect = 2e-51
 Identities = 118/291 (40%), Positives = 171/291 (58%), Gaps = 5/291 (1%)
 Frame = -3

Query: 860  VKGYRLWNRGEPGFKTIISRDVLFNE-LEFPCFVHPSPQTVSENDTTPNEVELSNVSPNI 684
            VKGY++W   +   K +ISR+V+F E + F      S  T+SE+D     +E   V+P++
Sbjct: 673  VKGYKVWVLEDK--KCVISRNVIFREQVMFKDLKGDSQNTISESD-----LEDLRVNPDM 725

Query: 683  VVPADSHINDALPVNVNDNDVHIEDDTQHDNVHDMHNEFPDVNTENEPVADNHDELNDYV 504
                D    D       DN    E  T H+ V +      D  +E E  +D  ++L+ Y 
Sbjct: 726  ---NDQEFTDQGGAT-QDNSNPSEATTSHNPVLNSPTHSQDEESEEED-SDAVEDLSTYQ 780

Query: 503  LTRDRTRRHVRVPNKFADFHMTSYVFSVFESIDGS-EPKTFSEAMNSAESTKWLNAMNEE 327
            L RDR RR ++   K+ + +M  + +  +   DG  EPK++ EA+   +  KW  AM EE
Sbjct: 781  LVRDRVRRTIKANPKYNESNMVGFAY--YSEDDGKPEPKSYQEALLDPDWEKWNAAMKEE 838

Query: 326  MNSLHVNNTWILVPKPANCSVVDCKWLYKIKQESEGV---RFKARLVAKGFTQKEGIDYT 156
            M S+  N+TW LV KP    ++ C+W++  K    GV   RF ARLVAKGFTQKEG+DY 
Sbjct: 839  MVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYN 898

Query: 155  EIFAPVVKFVTVRIMLALVAQFDWELKQLDVKTAFLHGDLDEKIFMKQPEG 3
            EIF+PVVK V++R +L++V  ++ EL+Q+DVKTAFLHG L+E+I+M QPEG
Sbjct: 899  EIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEG 949