BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00042307
         (3032 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]          1640   0.0  
gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]          1632   0.0  
gb|AKN59247.1| polyprotein [Lychnis mottle virus]                    1602   0.0  
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot...  1407   0.0  
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v...   941   0.0  
ref|YP_227370.1| helicase [Strawberry latent ringspot virus]          470   e-152
ref|YP_009104369.1| polyprotein [Carrot torradovirus 1] gi|55869...    82   5e-12
gb|ACU01024.1| polyprotein [Tomato chocolate virus]                    79   4e-11
gb|AGY34703.1| polyprotein 1 [Mulberry mosaic roll leaf-associat...    78   8e-11
ref|NP_734023.1| NTP-binding domain [Satsuma dwarf virus]              77   8e-11
ref|NP_620566.1| polyprotein [Satsuma dwarf virus] gi|81979373|s...    77   1e-10
gb|AKA95161.1| polyprotein [Tomato torrado virus]                      77   1e-10
gb|ACB47566.1| polyprotein [Tomato torrado virus]                      77   1e-10
ref|YP_001039627.1| polyprotein [Tomato torrado virus] gi|317411...    77   1e-10
gb|AIY55496.1| polyprotein [Tomato torrado virus]                      77   2e-10
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]          77   2e-10
ref|YP_003097229.1| polyprotein [Tomato chocolate spot virus] gi...    73   2e-09
gb|ACX53644.1| polyprotein [Turnip ringspot virus]                     73   2e-09
ref|YP_009165993.1| Polyprotein [Tomato necrotic dwarf virus] gi...    73   3e-09
gb|AIT59085.1| polyprotein [Motherwort yellow mottle virus]            72   4e-09

>gb|AKN59243.1| polyprotein [Cnidium vein yellowing virus 1]
          Length = 2205

 Score = 1640 bits (4247), Expect = 0.0
 Identities = 802/935 (85%), Positives = 849/935 (90%)
 Frame = -2

Query: 2851 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 2672
            MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD  G LGGLVSTGRCA MKE
Sbjct: 1    MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60

Query: 2671 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 2492
            +NLQVERDRC MRE+EE ELL+AD+E+EFMSEL+ F++P PF G+SFGTV+ T P +G S
Sbjct: 61   KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTVPKIGSS 120

Query: 2491 YVHQAIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 2312
            Y  + I KA GLDVEEY K+QAP+AG+RNFL+ +   DAE LT +VRTAI NPGFGNPSF
Sbjct: 121  YAGRKILKAKGLDVEEYAKFQAPKAGVRNFLQPNCRTDAEVLTTIVRTAIENPGFGNPSF 180

Query: 2311 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMTQA 2132
            DYTGLGGDEFKYRFDKDGLFADD LGLARFVSAGFTE   P    VAPLTSGD  VM QA
Sbjct: 181  DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSRPNVFDVAPLTSGDFKVMIQA 240

Query: 2131 LSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPG 1952
            LSDEW EWIYFEEDYEE L E  ++FFPF   LE+ K+     PLSPT VLDSADSYLPG
Sbjct: 241  LSDEWSEWIYFEEDYEEALSEEFEIFFPF---LESAKVCEPA-PLSPTSVLDSADSYLPG 296

Query: 1951 TKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEP 1772
            TKWVYDSDEED+IPVAPIDRFHNKKFD+DF DYCDTEY +QP  + YTETWF+DGCLP P
Sbjct: 297  TKWVYDSDEEDHIPVAPIDRFHNKKFDLDFEDYCDTEYLEQPAETVYTETWFIDGCLPGP 356

Query: 1771 WFMRGAPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKK 1592
            WF RG  LDEAIICEKLPL+GKSPLEL+IQYQV+PTGDLL D+QRALFAYYEKEA PNKK
Sbjct: 357  WFKRGVSLDEAIICEKLPLIGKSPLELIIQYQVKPTGDLLLDVQRALFAYYEKEAWPNKK 416

Query: 1591 YFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGV 1412
            +FDLNGVPT+LVFEDWR DLRYCLYAP V+GNQLKHLMAIV+APLPGWLLDFPKR+KSG 
Sbjct: 417  HFDLNGVPTMLVFEDWRCDLRYCLYAPFVQGNQLKHLMAIVDAPLPGWLLDFPKRQKSGT 476

Query: 1411 LQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 1232
            LQASGWNPLRYF KQ TLGFLDGV++KLRELLGPVINAAGYVWDLIIKAKDYAF+MLDEM
Sbjct: 477  LQASGWNPLRYFSKQATLGFLDGVIAKLRELLGPVINAAGYVWDLIIKAKDYAFAMLDEM 536

Query: 1231 VSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 1052
            +SKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 537  ISKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 596

Query: 1051 LGQAHMGALKRSTKIWELVQRWDQPSEVKRXXXXXXXXXXXXXXEKEEWLRELMASPHSI 872
            LGQAHMGALKRSTKIWELVQ+WDQPSEV+R              EKEEW RELMASPHSI
Sbjct: 597  LGQAHMGALKRSTKIWELVQKWDQPSEVRRIDEEIVEILVEESPEKEEWFRELMASPHSI 656

Query: 871  PECVIDLTHMKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 692
            PECVIDLTHMKDLLG +CS+FKEAFEVG  VASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 657  PECVIDLTHMKDLLGGKCSSFKEAFEVGTSVASSPGMLFGSGFIWKILLLLCPLSMFGVS 716

Query: 691  KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 512
            KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYAT+GVDFQAWR
Sbjct: 717  KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATIGVDFQAWR 776

Query: 511  SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 332
            SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 777  SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 836

Query: 331  RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 152
            RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG
Sbjct: 837  RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 896

Query: 151  SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR 47
            SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 897  SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR 931


>gb|AKN59245.1| polyprotein [Cnidium vein yellowing virus 2]
          Length = 2209

 Score = 1632 bits (4227), Expect = 0.0
 Identities = 790/935 (84%), Positives = 847/935 (90%)
 Frame = -2

Query: 2851 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 2672
            MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD  G LGGLVSTGRCA MKE
Sbjct: 1    MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60

Query: 2671 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 2492
            +NLQVERDRC MRE+EE ELL+AD+E+EFMSEL+ F++P PF G+SFGTV+ T P +G S
Sbjct: 61   KNLQVERDRCAMREFEEEELLEADVEMEFMSELMDFIAPFPFPGISFGTVSMTDPKIGSS 120

Query: 2491 YVHQAIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 2312
            Y  + I KA GLDVEEY K+QAPRAG RNFL+ +   D E LT +VRTAI NPGFGNPSF
Sbjct: 121  YAGRKILKAKGLDVEEYAKFQAPRAGARNFLQPNCRTDVEVLTTIVRTAIENPGFGNPSF 180

Query: 2311 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMTQA 2132
            DYTGLGGDEFKYRFDKDGLFADD LGLARFVSAGFTE   P    VAPLTSGD +VM +A
Sbjct: 181  DYTGLGGDEFKYRFDKDGLFADDDLGLARFVSAGFTEGSKPNVFDVAPLTSGDFNVMMRA 240

Query: 2131 LSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPG 1952
            LSDEW EW YFEEDYEE L EG ++FFP    +ET K +  + P SPTCVLDSADSYL G
Sbjct: 241  LSDEWVEWCYFEEDYEEALTEGFELFFPPHNGVETLKSSLGSGPSSPTCVLDSADSYLSG 300

Query: 1951 TKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEP 1772
            TKWVYDSDEE+Y+PVAP+D+FHNKKF++DF+DYCD EY +QPVGS  TETWF+DGCLP P
Sbjct: 301  TKWVYDSDEEEYVPVAPVDQFHNKKFNLDFIDYCDLEYIEQPVGSLRTETWFIDGCLPGP 360

Query: 1771 WFMRGAPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKK 1592
            WF RGA +DEA+ICEKLPL+GKSPLEL+IQYQV PTGDLL DIQRALFAYYE+EALPNKK
Sbjct: 361  WFKRGALIDEAVICEKLPLIGKSPLELIIQYQVAPTGDLLLDIQRALFAYYEREALPNKK 420

Query: 1591 YFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGV 1412
            +FDLNGVPTLLVFEDWRADLRYCL+AP + GNQLKHLM +++ PLPGWLLDFPKR++SG+
Sbjct: 421  FFDLNGVPTLLVFEDWRADLRYCLFAPFISGNQLKHLMVVIDTPLPGWLLDFPKRQRSGL 480

Query: 1411 LQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEM 1232
            LQASGWNPLRYF KQ TLGFLDGVV+KLRELLGPVINAAGYVWDL+IKAKDYAFSMLDEM
Sbjct: 481  LQASGWNPLRYFSKQATLGFLDGVVAKLRELLGPVINAAGYVWDLVIKAKDYAFSMLDEM 540

Query: 1231 VSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 1052
            +SKRGEIL+ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF
Sbjct: 541  ISKRGEILRALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQF 600

Query: 1051 LGQAHMGALKRSTKIWELVQRWDQPSEVKRXXXXXXXXXXXXXXEKEEWLRELMASPHSI 872
            LG AHMGALKRSTKIWELVQ+WD+PSEVK               EKEEWLRELMASPHS+
Sbjct: 601  LGHAHMGALKRSTKIWELVQKWDKPSEVKCIDGEIIDILIEESPEKEEWLRELMASPHSV 660

Query: 871  PECVIDLTHMKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 692
            PECVIDLTHMKDLLG +CSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS
Sbjct: 661  PECVIDLTHMKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVS 720

Query: 691  KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWR 512
            KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTG KSEFLDYIYATVGVDFQAWR
Sbjct: 721  KTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGGKSEFLDYIYATVGVDFQAWR 780

Query: 511  SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 332
            SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD
Sbjct: 781  SEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLD 840

Query: 331  RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNG 152
            RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD+LDSLDYAQTGRVFSRNG
Sbjct: 841  RALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDLLDSLDYAQTGRVFSRNG 900

Query: 151  SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR 47
            SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 901  SDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR 935


>gb|AKN59247.1| polyprotein [Lychnis mottle virus]
          Length = 2260

 Score = 1602 bits (4147), Expect = 0.0
 Identities = 784/986 (79%), Positives = 846/986 (85%), Gaps = 51/986 (5%)
 Frame = -2

Query: 2851 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 2672
            MGYSRGSRGKADKAKLCG+CFAPFPDAQERKVHY+KYNCRD  G LGGLVSTGRCA MKE
Sbjct: 1    MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 60

Query: 2671 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 2492
            +NLQVERDRC MRE+EE ELL+AD+E+EF+SEL+ FV+P  F G+SFGT++ T P +G S
Sbjct: 61   KNLQVERDRCAMREFEEEELLEADVEMEFVSELMDFVAPFSFPGISFGTISMTTPKIGAS 120

Query: 2491 YVHQAIFKADGLDVEEYTKYQAPRAGMRNFLKADRICDAEALTGVVRTAIVNPGFGNPSF 2312
            Y  + IFKA G DVEEYTK+QAP+AG RNFL+ DR  DAE LT VVRTAI NPGFGNPSF
Sbjct: 121  YAGRKIFKAKGFDVEEYTKFQAPKAGARNFLQPDRKSDAEILTTVVRTAIENPGFGNPSF 180

Query: 2311 DYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGF------------------------- 2207
            DYTGLGGDEF+YRF KDGLFADD LGLARFVSAGF                         
Sbjct: 181  DYTGLGGDEFRYRFGKDGLFADDDLGLARFVSAGFTEGSRSNALDVAPLTPGDLDVISFG 240

Query: 2206 --------------------------TESLGPENRSVAPLTSGDMDVMTQALSDEWCEWI 2105
                                      TE        VAPLT GD+DVMTQALSDEW  W 
Sbjct: 241  TISMTNPKIGASYAGRKLARFVSAGFTEGSRSNALDVAPLTPGDLDVMTQALSDEWVGWY 300

Query: 2104 YFEEDYEEVLLEGLDVFFPFFGKLETEKLTSATEPLSPTCVLDSADSYLPGTKWVYDSDE 1925
            + EEDYEE L+E   ++FP   +++  +    +E LSPTCVLDSADSY PGTKWVYDSDE
Sbjct: 301  HLEEDYEEALIEEFALYFPPHDRVKDTESLLGSESLSPTCVLDSADSYPPGTKWVYDSDE 360

Query: 1924 EDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQPVGSAYTETWFVDGCLPEPWFMRGAPLD 1745
            EDY+P AP+DRFHNKKF++DF+DYCD E  +QP  + YTETWF+DGCLP  WF RG P+D
Sbjct: 361  EDYVPTAPVDRFHNKKFNLDFIDYCDMECVEQPAENIYTETWFIDGCLPGFWFKRGTPID 420

Query: 1744 EAIICEKLPLVGKSPLELMIQYQVQPTGDLLFDIQRALFAYYEKEALPNKKYFDLNGVPT 1565
            EA++CEKLPL+GKSPLELMIQYQV+PTGDLL D+QRALFAYYEKEALPNKK+FDLNGVPT
Sbjct: 421  EAVVCEKLPLIGKSPLELMIQYQVEPTGDLLLDVQRALFAYYEKEALPNKKFFDLNGVPT 480

Query: 1564 LLVFEDWRADLRYCLYAPLVKGNQLKHLMAIVNAPLPGWLLDFPKRRKSGVLQASGWNPL 1385
            LLVFEDWRADLRYCL+AP ++GNQLKHLM +++APLPGWLLDFPKR+KSG+LQASGWNPL
Sbjct: 481  LLVFEDWRADLRYCLFAPFIQGNQLKHLMVVIDAPLPGWLLDFPKRQKSGLLQASGWNPL 540

Query: 1384 RYFFKQTTLGFLDGVVSKLRELLGPVINAAGYVWDLIIKAKDYAFSMLDEMVSKRGEILK 1205
            RYF +QTTLGFLDGVV+KLRELLGPV+NAAGYVWDL+IKAKDYAFSMLDEM+SKRGEIL+
Sbjct: 541  RYFARQTTLGFLDGVVAKLRELLGPVVNAAGYVWDLVIKAKDYAFSMLDEMISKRGEILR 600

Query: 1204 ALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 1025
            ALLQPLLYV GFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL
Sbjct: 601  ALLQPLLYVSGFLIFLGSLKGLQTIVEKLGVPLAVLTAAAIGIGVYILVQFLGQAHMGAL 660

Query: 1024 KRSTKIWELVQRWDQPSEVKRXXXXXXXXXXXXXXEKEEWLRELMASPHSIPECVIDLTH 845
            KRSTKIWELVQ+WD+PSEVK               EKEEWLRELMASPHS+PECVIDLTH
Sbjct: 661  KRSTKIWELVQKWDKPSEVKHIDEEIIDLLVEESPEKEEWLRELMASPHSVPECVIDLTH 720

Query: 844  MKDLLGERCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 665
            MKDLLG +CSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL
Sbjct: 721  MKDLLGGKCSTFKEAFEVGAPVASSPGMLFGSGFIWKILLLLCPLSMFGVSKTLSCAKDL 780

Query: 664  ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 485
            ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA
Sbjct: 781  ITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTA 840

Query: 484  TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQA 305
            TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRK PGAYITHFNNLLQSLDRALVECQQA
Sbjct: 841  TPTSIFLGPQERLKRLRSCKDKADRLILQMDSRKAPGAYITHFNNLLQSLDRALVECQQA 900

Query: 304  LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 125
            LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK
Sbjct: 901  LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYK 960

Query: 124  NQSAVLYDDFGAVSEGGHFDEAEIIR 47
            NQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 961  NQSAVLYDDFGAVSEGGHFDEAEIIR 986


>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 2227

 Score = 1407 bits (3642), Expect = 0.0
 Identities = 694/955 (72%), Positives = 782/955 (81%), Gaps = 20/955 (2%)
 Frame = -2

Query: 2851 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 2672
            MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD  G LGGLVSTGRCA  KE
Sbjct: 1    MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60

Query: 2671 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 2492
            RNL+VE DR  +    +  L + D+E+ FMS+L  F        ++    +      G S
Sbjct: 61   RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120

Query: 2491 YVHQAIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 2318
            Y+ + I++A GLDV +Y  +Q  +     R FL  DR  DAE LT VVRTAIV  GFG+P
Sbjct: 121  YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180

Query: 2317 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 2138
            +FDYTGLGGD  KYRFD D L++D S GL RFVSAGFTES   +      LT  D+D MT
Sbjct: 181  TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238

Query: 2137 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 2009
            QALSDEW EW+YFEED EE L E L+       ++                 + ++  + 
Sbjct: 239  QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298

Query: 2008 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 1829
              P+SP  VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299  ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358

Query: 1828 PVGSAYTETWFVDGCLPEPWFMRGAPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 1649
            P G+ YTETWF+DGCLP  WF RG  +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL 
Sbjct: 359  PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418

Query: 1648 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 1469
            DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419  DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478

Query: 1468 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 1289
            NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479  NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538

Query: 1288 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1109
            VWDLIIKAKD+AF  L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE  G+P
Sbjct: 539  VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598

Query: 1108 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQRWDQPSEVKRXXXXXXXXXXX 929
            LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK            
Sbjct: 599  LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658

Query: 928  XXXEKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 752
               +KEEW+REL+ASPH +PECVIDLTHMKDLL  ++C+ FK+AFEVGA  ASSPGMLFG
Sbjct: 659  ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718

Query: 751  SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 572
            SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG 
Sbjct: 719  SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778

Query: 571  KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 392
            KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779  KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838

Query: 391  SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 212
            SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839  SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898

Query: 211  DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR 47
            DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 899  DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR 953


>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
          Length = 719

 Score =  941 bits (2432), Expect = 0.0
 Identities = 466/721 (64%), Positives = 549/721 (76%), Gaps = 20/721 (2%)
 Frame = -2

Query: 2851 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 2672
            MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD  G LGGLVSTGRCA  KE
Sbjct: 1    MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60

Query: 2671 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 2492
            RNL+VE DR  +    +  L + D+E+ FMS+L  F        ++    +      G S
Sbjct: 61   RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120

Query: 2491 YVHQAIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 2318
            Y+ + I++A GLDV +Y  +Q  +     R FL  DR  DAE LT VVRTAIV  GFG+P
Sbjct: 121  YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180

Query: 2317 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 2138
            +FDYTGLGGD  KYRFD D L++D S GL RFVSAGFTES   +      LT  D+D MT
Sbjct: 181  TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238

Query: 2137 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 2009
            QALSDEW EW+YFEED EE L E L+       ++                 + ++  + 
Sbjct: 239  QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298

Query: 2008 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 1829
              P+SP  VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299  ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358

Query: 1828 PVGSAYTETWFVDGCLPEPWFMRGAPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 1649
            P G+ YTETWF+DGCLP  WF RG  +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL 
Sbjct: 359  PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418

Query: 1648 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 1469
            DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419  DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478

Query: 1468 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 1289
            NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479  NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538

Query: 1288 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 1109
            VWDLIIKAKD+AF  L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE  G+P
Sbjct: 539  VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598

Query: 1108 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQRWDQPSEVKRXXXXXXXXXXX 929
            LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK            
Sbjct: 599  LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658

Query: 928  XXXEKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 752
               +KEEW+REL+ASPH +PECVIDLTHMKDLL  ++C+ FK+AFEVGA  ASSPGMLFG
Sbjct: 659  ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718

Query: 751  S 749
            S
Sbjct: 719  S 719


>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
          Length = 548

 Score =  470 bits (1210), Expect = e-152
 Identities = 228/234 (97%), Positives = 233/234 (99%)
 Frame = -2

Query: 748 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 569
           GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1   GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60

Query: 568 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 389
           SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61  SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120

Query: 388 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 209
           RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121 RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180

Query: 208 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR 47
           DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 181 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR 234


>ref|YP_009104369.1| polyprotein [Carrot torradovirus 1] gi|558698287|gb|AHA85556.1|
           polyprotein [Carrot torradovirus 1]
          Length = 2192

 Score = 81.6 bits (200), Expect = 5e-12
 Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 2/180 (1%)
 Frame = -2

Query: 583 LTGSKSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLI 404
           +TG  S     I A +  D   W ++V E+T+          Q+ + +    KDK   L 
Sbjct: 296 VTGFASPLSASINAVLNTDLFDWFNKVNEVTSPQNRLNNFASQDFVAKAALLKDKVPLLE 355

Query: 403 LQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCS 224
            +     +     T F+  +  LD+ L E      VG++R+ P C+  +G    GK+   
Sbjct: 356 AEFAKYPISPFVSTRFSYAVTKLDKILHEATAHKGVGQFRQEPFCVQFFGKPGCGKTTSM 415

Query: 223 QYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAV--SEGGHFDEAEII 50
            Y I D+L+ +   +  R++S +  D +WS Y +Q AVL DDFG +  S   H D  + I
Sbjct: 416 NYFITDLLNKMGEPKVNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDSANQHDDVKDFI 475


>gb|ACU01024.1| polyprotein [Tomato chocolate virus]
          Length = 2155

 Score = 78.6 bits (192), Expect = 4e-11
 Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
 Frame = -2

Query: 598 EVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDK 419
           E+  ++ G K+  L  I AT+  D   W  EV  +   +            ++L   +++
Sbjct: 279 EIIVSIFGFKNPILSAISATLSTDLFEWMQEVDAVCDPSLRLENFANPAFTEKLNHLREQ 338

Query: 418 ADRLILQMDSRKVPGAYITH-FNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHV 242
           A ++   + +  V  A+++H  +  +  LD+   E  + + VG++R  P  +  YG S  
Sbjct: 339 ALKISAYIATHPV-AAFLSHRVSASINQLDKIYAENSRHVGVGQYRAEPFMVQWYGASGC 397

Query: 241 GKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEG 77
           GKS   +  I+DVLD +   +  R+++ +  D++WS Y +Q+AVL DD GA+ +G
Sbjct: 398 GKSTAMRLFINDVLDCMGEPKLNRLYAVSKRDAYWSNYAHQTAVLMDDMGALRDG 452


>gb|AGY34703.1| polyprotein 1 [Mulberry mosaic roll leaf-associated virus]
          Length = 2102

 Score = 77.8 bits (190), Expect = 8e-11
 Identities = 51/206 (24%), Positives = 98/206 (47%), Gaps = 3/206 (1%)
 Frame = -2

Query: 658  IQGGQDAAGRFFQDIVGGTQEVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTATP 479
            ++ G+D        ++     ++ ++TG +S+F D + A V VD + W ++  ++     
Sbjct: 490  LRKGKDVLKELASWLIEVLGRIYDSVTGKESQFFDELSALVQVDVKHWLTQAQQVLLEAQ 549

Query: 478  TSIFLGPQERLKRLRSCKDKADRLILQMDS--RKVPGAYITHFNNLLQSLDRALVECQQA 305
            T         L   R  +D  ++L+L +    RK+   + T  N +   L +   +C +A
Sbjct: 550  TMALTDKVLLLSVSRLVED-GNKLLLGVSGIPRKLTMDFFTLINKVQTDLKKIHEQCVKA 608

Query: 304  LSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDY-AQTGRVFSRNGSDSFWSCY 128
                  R TP  ++LYG SH GKS+  +   D +L    Y   +  ++++  +D+FWS Y
Sbjct: 609  GRFEGRRHTPFWLYLYGPSHCGKSLLMEQAADVLLTEAGYPLSSNSLYTKAATDAFWSGY 668

Query: 127  KNQSAVLYDDFGAVSEGGHFDEAEII 50
            + +  V+ DD  A+   G   E+E++
Sbjct: 669  RREYCVMLDDLSAICSNGVSLESEML 694


>ref|NP_734023.1| NTP-binding domain [Satsuma dwarf virus]
          Length = 1190

 Score = 77.4 bits (189), Expect = 8e-11
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
 Frame = -2

Query: 574  SKSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQM 395
            S+S+ +  I  + G++   W  +V    +   +S    P + L R R   +  D +   +
Sbjct: 634  SESQAMQTILLSSGINTCGWLEKVAAFHSDVHSSQICIP-DLLLRARQLIETGDTISDLL 692

Query: 394  DSRKVPGAYITH--FNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQ 221
             +  V  +++        L+ L     + Q A+ V    + P  ++  GDS VGKS   +
Sbjct: 693  SNSTVSLSFLLRERIKLALRELKEDHTQLQLAVDVSVSSECPFVLFFAGDSGVGKSTAMK 752

Query: 220  YLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGG-HFDEAEIIR 47
               ++VLD L Y +T R + RN  + FWS Y   +AV+YDDF  + +G   +DEAE+IR
Sbjct: 753  KFREEVLDKLGYPKTARFYPRNPGEKFWSGYLRHTAVIYDDFAQIPQGDMTYDEAELIR 811


>ref|NP_620566.1| polyprotein [Satsuma dwarf virus] gi|81979373|sp|Q9WAL8.1|POL1_SDVS5
            RecName: Full=RNA1 polyprotein; AltName: Full=P1;
            Contains: RecName: Full=Putative helicase; AltName:
            Full=Putative NTP-binding protein; Contains: RecName:
            Full=Probable picornain 3C-like protease; Short=3C-like
            protease; Contains: RecName: Full=Probable RNA-directed
            RNA polymerase gi|4589400|dbj|BAA76746.1| polyprotein
            [Satsuma dwarf virus]
          Length = 2081

 Score = 77.4 bits (189), Expect = 1e-10
 Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
 Frame = -2

Query: 574  SKSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQM 395
            S+S+ +  I  + G++   W  +V    +   +S    P + L R R   +  D +   +
Sbjct: 634  SESQAMQTILLSSGINTCGWLEKVAAFHSDVHSSQICIP-DLLLRARQLIETGDTISDLL 692

Query: 394  DSRKVPGAYITH--FNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQ 221
             +  V  +++        L+ L     + Q A+ V    + P  ++  GDS VGKS   +
Sbjct: 693  SNSTVSLSFLLRERIKLALRELKEDHTQLQLAVDVSVSSECPFVLFFAGDSGVGKSTAMK 752

Query: 220  YLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGG-HFDEAEIIR 47
               ++VLD L Y +T R + RN  + FWS Y   +AV+YDDF  + +G   +DEAE+IR
Sbjct: 753  KFREEVLDKLGYPKTARFYPRNPGEKFWSGYLRHTAVIYDDFAQIPQGDMTYDEAELIR 811


>gb|AKA95161.1| polyprotein [Tomato torrado virus]
          Length = 2158

 Score = 77.0 bits (188), Expect = 1e-10
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
 Frame = -2

Query: 598 EVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTT-ATPTSIFLGPQERLKRLRSCKD 422
           E+   + G K+  L  I AT+  D   W  EV  +   A     F  P   +K L+  ++
Sbjct: 279 EIIVDIFGFKNPVLSAISATLSTDLFTWMEEVDAVCDPAHRLENFANPAFTIK-LQHLRE 337

Query: 421 KADRLILQMDSRKVPGAYITH-FNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH 245
           +A ++   + +  V  A+++H     +  LD+   E  Q   VG++R  P  +  YG S 
Sbjct: 338 QALKISAYIATHPV-AAFMSHRVTAAIAHLDKIYGENCQHTGVGQYRAEPFMVQWYGASG 396

Query: 244 VGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEG 77
            GKS   +  I+DVLD ++  +  R+++ +  D++WS Y +Q+A+L DD GA+ +G
Sbjct: 397 CGKSTSMRLFINDVLDRMEEPKLNRLYAVSKRDAYWSNYAHQTAILMDDMGALRDG 452


>gb|ACB47566.1| polyprotein [Tomato torrado virus]
          Length = 2158

 Score = 77.0 bits (188), Expect = 1e-10
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
 Frame = -2

Query: 598 EVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTT-ATPTSIFLGPQERLKRLRSCKD 422
           E+   + G K+  L  I AT+  D   W  EV  +   A     F  P   +K L+  ++
Sbjct: 279 EIIVDIFGFKNPVLSAISATLSTDLFTWMEEVDAVCDPAHRLENFANPAFTIK-LQHLRE 337

Query: 421 KADRLILQMDSRKVPGAYITH-FNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH 245
           +A ++   + +  V  A+++H     +  LD+   E  Q   VG++R  P  +  YG S 
Sbjct: 338 QALKISAYIATHPV-AAFMSHRVTAAIAHLDKIYGENCQHTGVGQYRAEPFMVQWYGASG 396

Query: 244 VGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEG 77
            GKS   +  I+DVLD ++  +  R+++ +  D++WS Y +Q+A+L DD GA+ +G
Sbjct: 397 CGKSTSMRLFINDVLDRMEEPKLNRLYAVSKRDAYWSNYAHQTAILMDDMGALRDG 452


>ref|YP_001039627.1| polyprotein [Tomato torrado virus]
           gi|317411796|sp|A1XIP9.1|POL1_TOTV RecName: Full=RNA1
           polyprotein; Contains: RecName: Full=Protease-cofactor;
           Contains: RecName: Full=Putative helicase; Contains:
           RecName: Full=Picornain 3C-like protease; Short=3C-like
           protease; Contains: RecName: Full=RNA-directed RNA
           polymerase gi|88061911|gb|ABD38934.1| polyprotein
           [Tomato torrado virus]
          Length = 2158

 Score = 77.0 bits (188), Expect = 1e-10
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 2/176 (1%)
 Frame = -2

Query: 598 EVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTT-ATPTSIFLGPQERLKRLRSCKD 422
           E+   + G K+  L  I AT+  D   W  EV  +   A     F  P   +K L+  ++
Sbjct: 279 EIIVDIFGFKNPVLSAISATLSTDLFTWMEEVDAVCDPAHRLENFANPAFTIK-LQHLRE 337

Query: 421 KADRLILQMDSRKVPGAYITH-FNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH 245
           +A ++   + +  V  A+++H     +  LD+   E  Q   VG++R  P  +  YG S 
Sbjct: 338 QALKISAYIATHPV-AAFMSHRVTAAIXHLDKIYGENCQHTGVGQYRAEPFMVQWYGASG 396

Query: 244 VGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEG 77
            GKS   +  I+DVLD ++  +  R+++ +  D++WS Y +Q+A+L DD GA+ +G
Sbjct: 397 CGKSTSMRLFINDVLDRMEEPKLNRLYAVSKRDAYWSNYAHQTAILMDDMGALRDG 452


>gb|AIY55496.1| polyprotein [Tomato torrado virus]
          Length = 2158

 Score = 76.6 bits (187), Expect = 2e-10
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 1/175 (0%)
 Frame = -2

Query: 598 EVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTT-ATPTSIFLGPQERLKRLRSCKD 422
           E+   + G K+  L  I AT+  D   W  EV  +   A     F  P   +K L+  ++
Sbjct: 279 EIIVDIFGFKNPVLSAISATLSTDLFTWMEEVDAVCDPAHRLENFANPAFTIK-LQHLRE 337

Query: 421 KADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHV 242
           +A ++   + +  V           +  LD+   E  Q   VG++R  P  +  YG S  
Sbjct: 338 QALKISAYIATHPVAAXMSHRVTAAIAHLDKIYGENCQHTGVGQYRAEPFMVQWYGASGC 397

Query: 241 GKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEG 77
           GKS   +  I+DVLD ++  +  R+++ +  D++WS Y +Q+A+L DD GA+ +G
Sbjct: 398 GKSTSMRLFINDVLDRMEEPKLNRLYAVSKRDAYWSNYAHQTAILMDDXGALRDG 452


>gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
          Length = 2223

 Score = 76.6 bits (187), Expect = 2e-10
 Identities = 40/119 (33%), Positives = 62/119 (52%)
 Frame = -2

Query: 427 KDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDS 248
           KDKA     +     V       FN  +  LD+ L + Q    VG++R  P C+ LYG  
Sbjct: 344 KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403

Query: 247 HVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGH 71
             GK++   ++I+D+L+ L    T R++S +  D +WS Y +Q AVL DDFG + +  +
Sbjct: 404 GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAAN 462


>ref|YP_003097229.1| polyprotein [Tomato chocolate spot virus]
           gi|254733074|gb|ACT79982.1| polyprotein [Tomato
           chocolate spot virus]
          Length = 2155

 Score = 73.2 bits (178), Expect = 2e-09
 Identities = 45/175 (25%), Positives = 87/175 (49%), Gaps = 1/175 (0%)
 Frame = -2

Query: 598 EVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDK 419
           E+   + G K+  L  I AT+  D   W  EV  +            +    +L   +++
Sbjct: 279 EIIVDMFGFKNPILSAISATLATDLFEWMKEVDAVCDPATRLENFANKAFPTKLNHLREQ 338

Query: 418 ADRLILQMDSRKVPGAYITH-FNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHV 242
           A ++   + +  V  A+++H  +  +  L++   E  + + VG++R  P  +  +G S  
Sbjct: 339 ALKISAYIATHPV-AAFMSHRVSAAINQLEKVYAESCRHMGVGQYRIEPFMVQWFGASGC 397

Query: 241 GKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEG 77
           GKS   +  I+DVLD +   +  R+++ +  D++WS Y +Q+A+L DD GA+ +G
Sbjct: 398 GKSTSMRLFINDVLDRMGEPKLNRLYAVSKRDAYWSNYAHQTAILMDDMGALRDG 452


>gb|ACX53644.1| polyprotein [Turnip ringspot virus]
          Length = 1857

 Score = 72.8 bits (177), Expect = 2e-09
 Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 5/219 (2%)
 Frame = -2

Query: 724 LLCPLSMFGVSKTLSCAKDLITIQGGQDA-AGRFFQDIVGGTQEVFYTLTGSKSEFLDYI 548
           + C  ++  + KT      + T  G   A AG+ F    G  Q+  + + G +S FL   
Sbjct: 324 IFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLF----GILQDFIWKVFGMESRFLRDA 379

Query: 547 YATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRL--ILQMDSRKVPG 374
               G D   W  ++ E   +     +    + +K     K   D    +L++ SR  P 
Sbjct: 380 SLMFGEDVDQWLKDIAECQDSYLAKAYSSQDDIIKMQALIKKGHDMRSKVLKVTSRISPV 439

Query: 373 AYITHFNNLLQSLDRALVE--CQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVL 200
              T    + +S+++ L E  CQ    +   RK P  ++ YG+S  GK++    LI D  
Sbjct: 440 LANTVTRGV-ESVEKLLRESLCQ---GIKATRKIPFVVYAYGESRTGKTLVVDKLITDFQ 495

Query: 199 DSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVS 83
           +     + G V+SRN  D +WS Y+ Q  V  DDFGAV+
Sbjct: 496 NHFGLGK-GTVYSRNPIDQYWSGYRRQPIVSIDDFGAVA 533


>ref|YP_009165993.1| Polyprotein [Tomato necrotic dwarf virus]
           gi|603146655|gb|AHU86525.1| Polyprotein [Tomato necrotic
           dwarf virus]
          Length = 2150

 Score = 72.8 bits (177), Expect = 3e-09
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 1/175 (0%)
 Frame = -2

Query: 598 EVFYTLTGSKSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDK 419
           E+     G K+  L  I AT+  D   W  EV  +            +    +L   +++
Sbjct: 276 EIIVGAFGFKNPVLSAISATLSTDLFEWMQEVDAVCDPATRLENFANKAFPDKLNHLREQ 335

Query: 418 ADRLILQMDSRKVPGAYITH-FNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHV 242
           A ++   + +  V  A+++H  +  +  L++   E  + + VG++R  P  +  YG S  
Sbjct: 336 ALKISAYIATHPV-AAFMSHRVSAAITQLEKVYAESCRHVGVGQYRIEPFMVQWYGASGC 394

Query: 241 GKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEG 77
           GKS   +  I+DVLD +   +  R+++ +  D++WS Y +Q+AVL DD GA+ +G
Sbjct: 395 GKSTAMRLFINDVLDRMGEPKLNRLYAVSKRDAYWSNYAHQTAVLMDDMGALRDG 449


>gb|AIT59085.1| polyprotein [Motherwort yellow mottle virus]
          Length = 2191

 Score = 72.0 bits (175), Expect = 4e-09
 Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
 Frame = -2

Query: 583 LTGSKSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLI 404
           +TG  S     +   +  +   W +EV  +T            +  +     KDK     
Sbjct: 294 ITGFASPLTATVNTVLNTELFQWFNEVNRVTDPVHKLENFAKPDFGREASLLKDKIKFFE 353

Query: 403 LQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCS 224
            Q     +       F++ +  L++ L        VG++RK P C+  +G+   GK++  
Sbjct: 354 AQFVKHPISPFVAGRFSHAVTKLEKLLESAHTHKGVGQFRKEPFCLQFFGEPGCGKTMSM 413

Query: 223 QYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAV--SEGGHFDEAEII 50
            + I+D+L+ +   +  R++S +  D +WS Y +Q+AVL DDFG +  S G + D  + I
Sbjct: 414 SFFINDLLNRMGEPKDNRLYSLSSKDGYWSNYNHQTAVLIDDFGQILDSAGQNDDVKDFI 473