BLASTX nr result
ID: Rehmannia27_contig00039840
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00039840
(530 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_014620128.1| PREDICTED: uncharacterized mitochondrial pro... 91 4e-26
emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera] 90 7e-26
gb|KYP56849.1| Retrovirus-related Pol polyprotein from transposo... 93 8e-26
ref|XP_010513698.1| PREDICTED: uncharacterized protein LOC104789... 93 1e-25
emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera] 87 4e-25
ref|XP_010419217.1| PREDICTED: uncharacterized protein LOC104704... 88 4e-25
emb|CAN65213.1| hypothetical protein VITISV_009492 [Vitis vinifera] 85 6e-25
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop... 85 2e-24
ref|XP_009142130.1| PREDICTED: uncharacterized protein LOC103866... 87 7e-24
ref|XP_007046012.1| Cysteine-rich RLK (RECEPTOR-like protein kin... 91 1e-23
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 80 2e-23
ref|XP_007022140.1| Cysteine-rich RLK (RECEPTOR-like protein kin... 105 2e-23
gb|AAF69161.1|AC007915_13 F27F5.19 [Arabidopsis thaliana] 83 4e-23
ref|XP_007029653.1| Cysteine-rich RLK (RECEPTOR-like protein kin... 99 5e-23
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 79 9e-23
ref|XP_013594540.1| PREDICTED: uncharacterized mitochondrial pro... 83 1e-22
ref|XP_009117178.1| PREDICTED: uncharacterized protein LOC103842... 86 2e-22
gb|KFK31542.1| hypothetical protein AALP_AA6G125900 [Arabis alpina] 85 2e-22
gb|AAC33963.1| contains similarity to reverse transcriptases (Pf... 80 3e-22
emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsi... 80 3e-22
>ref|XP_014620128.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 369
Score = 91.3 bits (225), Expect(2) = 4e-26
Identities = 45/78 (57%), Positives = 56/78 (71%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQ 475
AA +NW ++QLDV+NAFLN DLFEEVYM+LP GY+ + L CRLNKSIY L+Q
Sbjct: 82 AAAKNWPILQLDVDNAFLNGDLFEEVYMELPKGYT------SVDKNLVCRLNKSIYGLRQ 135
Query: 476 ASRQWNSKFTSVLLQFGF 529
ASRQW K ++ L+ GF
Sbjct: 136 ASRQWFCKLSTTLIANGF 153
Score = 53.5 bits (127), Expect(2) = 4e-26
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +1
Query: 184 NKARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGS 300
+KARL+AKGY QQ G+ + DTFSPVAKL +++VLL + +
Sbjct: 45 HKARLVAKGYTQQAGIDFSDTFSPVAKLTSIRVLLAVAA 83
>emb|CAN60829.1| hypothetical protein VITISV_012059 [Vitis vinifera]
Length = 1128
Score = 89.7 bits (221), Expect(2) = 7e-26
Identities = 46/78 (58%), Positives = 55/78 (70%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQ 475
AA + W L QLDVNNAFL+ DL EEVYM LPLG+S P+ C+L KS+Y L+Q
Sbjct: 713 AAAKQWYLHQLDVNNAFLHGDLNEEVYMQLPLGFS------TPNDPRVCKLKKSLYGLRQ 766
Query: 476 ASRQWNSKFTSVLLQFGF 529
ASRQW SK +S LL+FGF
Sbjct: 767 ASRQWYSKLSSSLLKFGF 784
Score = 54.3 bits (129), Expect(2) = 7e-26
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGS 300
KARL+AKGY QQEG+ + DT+SPVAK+ TV+VLL + +
Sbjct: 677 KARLVAKGYTQQEGLDFFDTYSPVAKMTTVRVLLAIAA 714
>gb|KYP56849.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 499
Score = 93.2 bits (230), Expect(2) = 8e-26
Identities = 47/77 (61%), Positives = 53/77 (68%)
Frame = +2
Query: 299 ATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQA 478
AT+NW L QLDVNN FLN DLFEEVYMDLP GY P+ L +LNKS Y L+QA
Sbjct: 83 ATKNWCLQQLDVNNVFLNGDLFEEVYMDLPQGYK------PPTHGLVSKLNKSFYGLRQA 136
Query: 479 SRQWNSKFTSVLLQFGF 529
SRQW KF++ LL GF
Sbjct: 137 SRQWFCKFSNTLLHHGF 153
Score = 50.8 bits (120), Expect(2) = 8e-26
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLL 288
K RL+AKGY QQ G+ + DTFSPVAKL +++VLL
Sbjct: 46 KIRLVAKGYTQQAGIDFSDTFSPVAKLTSIRVLL 79
>ref|XP_010513698.1| PREDICTED: uncharacterized protein LOC104789749 [Camelina sativa]
Length = 1375
Score = 93.2 bits (230), Expect(2) = 1e-25
Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +2
Query: 278 KSFFPWAATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYS-GQKDLLAPSCQLACRLNK 454
K AAT+ W L Q+DV+NAFL++DL EE+YM LP GY+ G ++L P+ CRL+K
Sbjct: 806 KMMLELAATEGWQLTQMDVSNAFLHSDLDEEIYMSLPQGYTLGTNEVLPPN--HVCRLHK 863
Query: 455 SIYDLKQASRQWNSKFTSVLLQFGF 529
SIY LKQASRQWN TSVLL GF
Sbjct: 864 SIYGLKQASRQWNRLITSVLLAAGF 888
Score = 50.1 bits (118), Expect(2) = 1e-25
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGS 300
KARL+AKG+ QQEGV + +TFS VAKL +VK++L L +
Sbjct: 776 KARLVAKGFTQQEGVDFNETFSLVAKLTSVKMMLELAA 813
>emb|CAN65820.1| hypothetical protein VITISV_042324 [Vitis vinifera]
Length = 1262
Score = 87.4 bits (215), Expect(2) = 4e-25
Identities = 45/78 (57%), Positives = 55/78 (70%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQ 475
AAT+ W L QLDVNNAFL+ DL E+VYM LP G+S P+ C+L KS+Y L+Q
Sbjct: 1019 AATKQWYLHQLDVNNAFLHEDLNEDVYMQLPPGFS------TPNDPRVCKLKKSLYGLRQ 1072
Query: 476 ASRQWNSKFTSVLLQFGF 529
ASRQW SK +S LL+FGF
Sbjct: 1073 ASRQWYSKLSSSLLKFGF 1090
Score = 54.3 bits (129), Expect(2) = 4e-25
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGS 300
KARL+AKGY QQEG+ + DT+SPVAK+ TV+VLL + +
Sbjct: 983 KARLVAKGYTQQEGLDFFDTYSPVAKMTTVRVLLAIAA 1020
>ref|XP_010419217.1| PREDICTED: uncharacterized protein LOC104704907 [Camelina sativa]
Length = 1032
Score = 88.2 bits (217), Expect(2) = 4e-25
Identities = 46/79 (58%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQK-DLLAPSCQLACRLNKSIYDLK 472
AA WSL QLD++NAFLN DL EE+YM LP GY+ K D L P+ C+LNKS+Y LK
Sbjct: 913 AAKLGWSLSQLDISNAFLNGDLDEEIYMRLPPGYASSKGDSLPPNA--VCKLNKSLYGLK 970
Query: 473 QASRQWNSKFTSVLLQFGF 529
QASRQW KF L GF
Sbjct: 971 QASRQWYLKFAETLQSLGF 989
Score = 53.5 bits (127), Expect(2) = 4e-25
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +1
Query: 184 NKARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGSNTKL 312
+KARL+AKGY Q+EG+ Y DT+SPVAKL +VK+L LG+ KL
Sbjct: 876 HKARLVAKGYTQKEGLDYVDTYSPVAKLTSVKML--LGAAAKL 916
>emb|CAN65213.1| hypothetical protein VITISV_009492 [Vitis vinifera]
Length = 659
Score = 84.7 bits (208), Expect(2) = 6e-25
Identities = 47/78 (60%), Positives = 56/78 (71%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQ 475
A +W L+QLD+NNAFL+ DL EEVYM LP GY + D L PS + L+KSIY LKQ
Sbjct: 394 ADIHSWFLVQLDINNAFLHGDLIEEVYMSLPQGYPHKGDTL-PSNTIFI-LHKSIYGLKQ 451
Query: 476 ASRQWNSKFTSVLLQFGF 529
ASRQW +KF+SVLL GF
Sbjct: 452 ASRQWFAKFSSVLLDKGF 469
Score = 56.2 bits (134), Expect(2) = 6e-25
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1
Query: 181 WNKARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPL 294
W+K L+AKGY QQEGV Y DTFS VAKL T+K+LL L
Sbjct: 356 WHKTHLVAKGYTQQEGVDYIDTFSLVAKLATIKLLLAL 393
>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
(gb|U12626) [Arabidopsis thaliana]
Length = 1315
Score = 85.1 bits (209), Expect(2) = 2e-24
Identities = 48/79 (60%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGY-SGQKDLLAPSCQLACRLNKSIYDLK 472
AA SL QLD++NAFLN DL EE+YM LP GY S Q D L P+ CRL KS+Y LK
Sbjct: 898 AARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNA--VCRLKKSLYGLK 955
Query: 473 QASRQWNSKFTSVLLQFGF 529
QASRQW KF+S LL GF
Sbjct: 956 QASRQWYLKFSSTLLGLGF 974
Score = 54.3 bits (129), Expect(2) = 2e-24
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGSNTKL 312
KARL+A+GY Q+EG+ Y +TFSPVAKL +VK+LL + + KL
Sbjct: 862 KARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKL 903
>ref|XP_009142130.1| PREDICTED: uncharacterized protein LOC103866013 [Brassica rapa]
Length = 1076
Score = 87.0 bits (214), Expect(2) = 7e-24
Identities = 43/80 (53%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSC--QLACRLNKSIYDL 469
AA ++WS+ QLD++NAFLN DL EE+YM LP GY +++ C C+L+KS+Y L
Sbjct: 952 AAAKDWSISQLDISNAFLNGDLDEEIYMRLPEGY---EEITGKKCPPNSVCKLHKSLYGL 1008
Query: 470 KQASRQWNSKFTSVLLQFGF 529
KQASRQWN K +SV+L GF
Sbjct: 1009 KQASRQWNQKLSSVILGDGF 1028
Score = 50.4 bits (119), Expect(2) = 7e-24
Identities = 22/39 (56%), Positives = 32/39 (82%)
Frame = +1
Query: 184 NKARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGS 300
+K+RL+AKGY Q EG+ Y DTFSPVAK+ T+++LL + +
Sbjct: 915 HKSRLVAKGYTQLEGLDYLDTFSPVAKIGTLRLLLSIAA 953
>ref|XP_007046012.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative
[Theobroma cacao] gi|508709947|gb|EOY01844.1|
Cysteine-rich RLK (RECEPTOR-like protein kinase) 8,
putative [Theobroma cacao]
Length = 374
Score = 91.3 bits (225), Expect(2) = 1e-23
Identities = 46/82 (56%), Positives = 57/82 (69%)
Frame = +2
Query: 284 FFPWAATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIY 463
FF A NW L QLDVNNAFLN +L E+VYM+LP GY + + S +L C+L+KS+Y
Sbjct: 127 FFALAVVHNWHLSQLDVNNAFLNGELAEDVYMELPQGYVINGECPSHS-RLVCKLHKSLY 185
Query: 464 DLKQASRQWNSKFTSVLLQFGF 529
LKQ SR WNSK T+ L +FGF
Sbjct: 186 GLKQVSRVWNSKLTTSLQKFGF 207
Score = 45.4 bits (106), Expect(2) = 1e-23
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +1
Query: 184 NKARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPL 294
+KARL+AKGYNQ +G Y+DTF+ VA+ TV+V L
Sbjct: 94 SKARLVAKGYNQIKGFDYQDTFNLVARQTTVRVFFAL 130
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 1013
Score = 80.5 bits (197), Expect(2) = 2e-23
Identities = 42/77 (54%), Positives = 51/77 (66%)
Frame = +2
Query: 299 ATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQA 478
A + W L QLDVNNAFL+ DL EEVYM LP G S + + C+L+KSIY LKQA
Sbjct: 592 AIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSS--SNTAPKVCKLHKSIYGLKQA 649
Query: 479 SRQWNSKFTSVLLQFGF 529
SRQW SK +S L+ G+
Sbjct: 650 SRQWYSKLSSALISMGY 666
Score = 55.5 bits (132), Expect(2) = 2e-23
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPL 294
KARL+AKGY+Q EG+ Y DT+SPVAKL TV+VLL L
Sbjct: 555 KARLVAKGYSQTEGLDYLDTYSPVAKLTTVRVLLAL 590
>ref|XP_007022140.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma
cacao] gi|508721768|gb|EOY13665.1| Cysteine-rich RLK
(RECEPTOR-like protein kinase) 8 [Theobroma cacao]
Length = 624
Score = 105 bits (262), Expect = 2e-23
Identities = 50/94 (53%), Positives = 68/94 (72%)
Frame = +2
Query: 248 FLPLLNSLLSKSFFPWAATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPS 427
F P+ + + FF AA QNW L QLD+NNAFLN +L EEVYM+LP GY+ +++ S
Sbjct: 241 FSPVARQTIVRMFFALAAAQNWRLSQLDINNAFLNGELTEEVYMELPQGYTFKRE-YPTS 299
Query: 428 CQLACRLNKSIYDLKQASRQWNSKFTSVLLQFGF 529
+L C+L+KS+Y LKQASR WNSK T+ +L++GF
Sbjct: 300 SRLVCKLHKSLYGLKQASRAWNSKLTTSVLKYGF 333
>gb|AAF69161.1|AC007915_13 F27F5.19 [Arabidopsis thaliana]
Length = 1309
Score = 82.8 bits (203), Expect(2) = 4e-23
Identities = 43/80 (53%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSC--QLACRLNKSIYDL 469
AA WS++QLD++NAFLN DL EE+YM +P GY+ DL+ S CRL+KSIY L
Sbjct: 967 AAKMKWSVLQLDISNAFLNGDLDEEIYMKIPPGYA---DLIGESLPPHAVCRLHKSIYGL 1023
Query: 470 KQASRQWNSKFTSVLLQFGF 529
KQASRQW K ++ L GF
Sbjct: 1024 KQASRQWYLKLSNTLKGMGF 1043
Score = 52.0 bits (123), Expect(2) = 4e-23
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGSNTK 309
KARL+AKGY Q+E + Y +TFSPVAKL +V+++L L + K
Sbjct: 931 KARLVAKGYTQEESLDYEETFSPVAKLTSVRMMLLLAAKMK 971
>ref|XP_007029653.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma
cacao] gi|508718258|gb|EOY10155.1| Cysteine-rich RLK
(RECEPTOR-like protein kinase) 8 [Theobroma cacao]
Length = 721
Score = 99.4 bits (246), Expect(2) = 5e-23
Identities = 47/84 (55%), Positives = 65/84 (77%)
Frame = +2
Query: 278 KSFFPWAATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKS 457
++FF AA +NW+L QLDVNNAFL+ DL EEVYMD+P GY +++ + S +L C+L+KS
Sbjct: 327 RTFFALAAARNWTLSQLDVNNAFLHGDLDEEVYMDIPKGYIVKREHPSGS-KLVCKLHKS 385
Query: 458 IYDLKQASRQWNSKFTSVLLQFGF 529
+Y LKQA RQWN+K TS ++ +GF
Sbjct: 386 LYGLKQALRQWNAKLTSCIIHYGF 409
Score = 35.0 bits (79), Expect(2) = 5e-23
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGS 300
KARL+AK Y+Q G Y++TF VAK ++ L +
Sbjct: 297 KARLVAKEYSQVAGFDYQETFGSVAKQSIIRTFFALAA 334
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 1433
Score = 79.3 bits (194), Expect(2) = 9e-23
Identities = 41/78 (52%), Positives = 50/78 (64%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQ 475
AA WS+ QLD++NAFLN DL EE+YM +P GY+ P CRL+KSIY LKQ
Sbjct: 1014 AAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPP-HAICRLHKSIYGLKQ 1072
Query: 476 ASRQWNSKFTSVLLQFGF 529
ASRQW K ++ L GF
Sbjct: 1073 ASRQWYLKLSNTLKGMGF 1090
Score = 54.3 bits (129), Expect(2) = 9e-23
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGSNTK 309
KARL+AKGY Q+EG+ Y +TFSPVAKL +V+++L L + K
Sbjct: 978 KARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMK 1018
>ref|XP_013594540.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Brassica oleracea var. oleracea]
Length = 397
Score = 83.2 bits (204), Expect(2) = 1e-22
Identities = 40/77 (51%), Positives = 52/77 (67%)
Frame = +2
Query: 299 ATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQA 478
A +NW +QLD++NAFLN DL EE+YM +P GY P + CRL+KS+Y LKQA
Sbjct: 79 AARNWFTLQLDISNAFLNGDLDEEIYMTIPQGYEELTGKTVPPGSV-CRLHKSLYGLKQA 137
Query: 479 SRQWNSKFTSVLLQFGF 529
SRQWN K ++V + GF
Sbjct: 138 SRQWNYKLSAVFFREGF 154
Score = 50.1 bits (118), Expect(2) = 1e-22
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPL 294
K+RL+AKGY Q EG+ Y DTFSPVAKL T ++LL L
Sbjct: 42 KSRLVAKGYTQLEGLDYIDTFSPVAKLGTFRLLLSL 77
>ref|XP_009117178.1| PREDICTED: uncharacterized protein LOC103842315 [Brassica rapa]
Length = 1130
Score = 86.3 bits (212), Expect(2) = 2e-22
Identities = 43/78 (55%), Positives = 53/78 (67%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQ 475
AA ++WS+ QLDV+NAFLN DL EE+Y+ LP GY P CRL+KS+Y LKQ
Sbjct: 839 AAAKSWSITQLDVSNAFLNGDLDEEIYLKLPQGYEELTGKKVPP-NAVCRLHKSLYGLKQ 897
Query: 476 ASRQWNSKFTSVLLQFGF 529
ASRQWN K + V+L GF
Sbjct: 898 ASRQWNHKLSEVILGDGF 915
Score = 46.2 bits (108), Expect(2) = 2e-22
Identities = 20/39 (51%), Positives = 30/39 (76%)
Frame = +1
Query: 184 NKARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGS 300
+K+ ++AKGY Q EG+ Y DTFSPVAK+ T ++LL + +
Sbjct: 802 HKSHVVAKGYTQLEGLDYLDTFSPVAKIGTFRLLLAVAA 840
>gb|KFK31542.1| hypothetical protein AALP_AA6G125900 [Arabis alpina]
Length = 796
Score = 84.7 bits (208), Expect(2) = 2e-22
Identities = 46/79 (58%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGY-SGQKDLLAPSCQLACRLNKSIYDLK 472
AA N SL QLD++NAFLN DL EE+YM LP GY + Q D L P+ CRL KS+Y LK
Sbjct: 555 AAIHNLSLHQLDISNAFLNGDLDEEIYMKLPQGYATKQGDSLPPNA--VCRLKKSLYGLK 612
Query: 473 QASRQWNSKFTSVLLQFGF 529
QASRQW KF++ L GF
Sbjct: 613 QASRQWFLKFSTTLTSLGF 631
Score = 47.8 bits (112), Expect(2) = 2e-22
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +1
Query: 184 NKARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGS 300
+KARL+AKGY Q+E + Y +TFS V KL TVK++L + +
Sbjct: 518 HKARLVAKGYTQKERIDYNETFSLVVKLTTVKLILAIAA 556
>gb|AAC33963.1| contains similarity to reverse transcriptases (Pfam; rvt.hmm, score:
11.19) [Arabidopsis thaliana]
Length = 1633
Score = 80.1 bits (196), Expect(2) = 3e-22
Identities = 41/78 (52%), Positives = 52/78 (66%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQ 475
AA WSL Q+DV+NAFL+ +L EE+YM LP GY+ + PS + CRL KS+Y LKQ
Sbjct: 1036 AAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPS-KPVCRLLKSLYGLKQ 1094
Query: 476 ASRQWNSKFTSVLLQFGF 529
ASRQW + +SV L F
Sbjct: 1095 ASRQWYKRLSSVFLGANF 1112
Score = 52.0 bits (123), Expect(2) = 3e-22
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGSNT 306
KARL+A+G+ QQEG+ Y +TFSPVAK +VK+LL L + T
Sbjct: 1000 KARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAAT 1039
>emb|CAB40067.1| putative retrotransposon polyprotein [Arabidopsis thaliana]
gi|7267797|emb|CAB81200.1| putative retrotransposon
polyprotein [Arabidopsis thaliana]
Length = 1203
Score = 80.1 bits (196), Expect(2) = 3e-22
Identities = 41/78 (52%), Positives = 52/78 (66%)
Frame = +2
Query: 296 AATQNWSLMQLDVNNAFLNADLFEEVYMDLPLGYSGQKDLLAPSCQLACRLNKSIYDLKQ 475
AA WSL Q+DV+NAFL+ +L EE+YM LP GY+ + PS + CRL KS+Y LKQ
Sbjct: 622 AAATGWSLTQMDVSNAFLHGELDEEIYMSLPQGYTPPTGISLPS-KPVCRLLKSLYGLKQ 680
Query: 476 ASRQWNSKFTSVLLQFGF 529
ASRQW + +SV L F
Sbjct: 681 ASRQWYKRLSSVFLGANF 698
Score = 52.0 bits (123), Expect(2) = 3e-22
Identities = 24/40 (60%), Positives = 32/40 (80%)
Frame = +1
Query: 187 KARLIAKGYNQQEGVHYRDTFSPVAKLVTVKVLLPLGSNT 306
KARL+A+G+ QQEG+ Y +TFSPVAK +VK+LL L + T
Sbjct: 586 KARLVAQGFTQQEGIDYMETFSPVAKFGSVKLLLGLAAAT 625