BLASTX nr result
ID: Rehmannia27_contig00038683
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00038683
(495 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 161 4e-43
gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposo... 159 6e-43
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 144 4e-37
emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera] 144 4e-37
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 144 7e-37
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 144 7e-37
dbj|BAA22288.1| polyprotein [Oryza australiensis] 143 9e-37
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 142 2e-36
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 142 3e-36
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 142 3e-36
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 140 8e-36
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 140 1e-35
emb|CDF77009.1| hypothetical transposable element-related protei... 140 1e-35
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 139 2e-35
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 139 2e-35
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 139 2e-35
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 138 7e-35
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 138 7e-35
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 137 1e-34
gb|KRZ60189.1| Retrovirus-related Pol polyprotein from transposo... 126 4e-34
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 161 bits (408), Expect = 4e-43
Identities = 76/137 (55%), Positives = 98/137 (71%), Gaps = 1/137 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI R+ RL + G+L QL +LP CE CL GK ++ F GK RA PLELV
Sbjct: 445 WHLRLGHINLNRIERLVKSGILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELV 504
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
HSD+CGPMNV+AR G YF++FIDD+SRYG VYLL H+SE+ + FK + EVEN+ + +
Sbjct: 505 HSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTI 564
Query: 440 KILRTDRGREYLSDQFR 490
K LR+DRG EY+ +F+
Sbjct: 565 KTLRSDRGGEYMDSKFQ 581
>gb|KYP42262.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 656
Score = 159 bits (403), Expect = 6e-43
Identities = 73/136 (53%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHIG++R+ +L +EG L Q + CE CL GK + PF GK +RA+ L L+
Sbjct: 366 WHCRLGHIGEKRINKLHKEGYLDQYDYESYTTCESCLKGKMTKSPFTGKGERASELLGLI 425
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM ++A+ G SYF+TF DD SRYG VYL+ H+SE+ + FKRF +EVE Q +N+
Sbjct: 426 HTDVCGPMKIQAKGGYSYFITFTDDMSRYGFVYLMKHKSESFEMFKRFRSEVEKQTGKNV 485
Query: 440 KILRTDRGREYLSDQF 487
K+LR+DRG EYLS+ F
Sbjct: 486 KVLRSDRGGEYLSNDF 501
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 144 bits (364), Expect = 4e-37
Identities = 65/136 (47%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ +L +G+L + CE C+ GK + PF G+ +RA+ L L+
Sbjct: 528 WHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCILGKMTKTPFTGRNERASDLLALI 587
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF DDYSRYG +YL+ H+SE+ + FK F EV+NQ + +
Sbjct: 588 HTDVCGPMSTTARGGFQYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTI 647
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG E+LS +F
Sbjct: 648 KSLRSDRGGEFLSQEF 663
>emb|CAN77149.1| hypothetical protein VITISV_019364 [Vitis vinifera]
Length = 1544
Score = 144 bits (364), Expect = 4e-37
Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPFG-KAKRATHPLELV 259
WH RLGHI +R++ L ++G L L LP CE CL GK ++PF K RA LEL+
Sbjct: 764 WHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELI 823
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
HSD+CGPM+V+AR G YF+TF DDYSRYG +YLL +SE + FK F E+E + + +
Sbjct: 824 HSDLCGPMSVQARGGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEMEQRHGKYI 883
Query: 440 KILRTDRGREYLSDQF 487
K LR+D G EY+S +F
Sbjct: 884 KTLRSDHGGEYISREF 899
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 144 bits (362), Expect = 7e-37
Identities = 68/136 (50%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ ++ R+GLL + CE CL GK + PF G+++RA+ L LV
Sbjct: 416 WHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALV 475
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF TF DD+SRYG VYL+ H+SE+ + FK F EV+N + +
Sbjct: 476 HTDVCGPMSSTARGGFGYFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTI 535
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS +F
Sbjct: 536 KYLRSDRGGEYLSLEF 551
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 144 bits (362), Expect = 7e-37
Identities = 68/136 (50%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ +L R+GLL L + CE CL GK + PF G+++R + L LV
Sbjct: 916 WHCRLGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMTKAPFTGQSERTSELLVLV 975
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF DD+SRYG VYL+ H+SE+ + FK F EV+N + +
Sbjct: 976 HTDVCGPMSSTARCGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKTI 1035
Query: 440 KILRTDRGREYLSDQF 487
K LR+D G EYLS +F
Sbjct: 1036 KYLRSDHGGEYLSLEF 1051
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 143 bits (361), Expect = 9e-37
Identities = 66/136 (48%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ +L ++GLL + CE CL GK + PF G ++RA+ L LV
Sbjct: 440 WHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALV 499
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF DD+SRYG +YL+ H+SE+ + FK F EV+N + +
Sbjct: 500 HTDVCGPMSSTARGGYQYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTI 559
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EY+S +F
Sbjct: 560 KFLRSDRGGEYVSQEF 575
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 142 bits (358), Expect = 2e-36
Identities = 67/136 (49%), Positives = 92/136 (67%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ +L R+GLL + CE CL GK + PF G+++RA+ L LV
Sbjct: 435 WHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSERASELLALV 494
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF DD+SRYG VYL+ H+SE+ + FK F EV+N + +
Sbjct: 495 HTDVCGPMSSTARSGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTI 554
Query: 440 KILRTDRGREYLSDQF 487
K LR+D G EYL +F
Sbjct: 555 KYLRSDHGGEYLRLEF 570
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 142 bits (357), Expect = 3e-36
Identities = 68/136 (50%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ +L R+GLL + CE CL GK + PF G++KRA+ L LV
Sbjct: 532 WHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLGLV 591
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF DD+SR G VYL+ H+SE+++ FK+F E +N + +
Sbjct: 592 HTDVCGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNEEQNYLGKTI 651
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS +F
Sbjct: 652 KYLRSDRGGEYLSLEF 667
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 142 bits (357), Expect = 3e-36
Identities = 68/136 (50%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ +L R+GLL + CE CL GK + PF G++KRA+ L LV
Sbjct: 532 WHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSKRASELLGLV 591
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF DD+SR G VYL+ H+SE+++ FK+F E +N + +
Sbjct: 592 HTDVCGPMSSTARGGFGYFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNEEQNYLGKTI 651
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS +F
Sbjct: 652 KYLRSDRGGEYLSLEF 667
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 140 bits (354), Expect = 8e-36
Identities = 66/136 (48%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI + R+ +L R+GLL + CE CL GK + PF G++++A+ L LV
Sbjct: 325 WHCRLGHINERRMEKLHRDGLLHSFDFESFETCESCLLGKMTKAPFTGQSEKASELLGLV 384
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF +D+SRYG VYL+ H+S++ + FK F EV+N + +
Sbjct: 385 HTDVCGPMSSTARGGFGYFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGKTI 444
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS +F
Sbjct: 445 KYLRSDRGGEYLSLEF 460
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 140 bits (352), Expect = 1e-35
Identities = 68/136 (50%), Positives = 88/136 (64%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPFG-KAKRATHPLELV 259
WH RLGHI +R++ L ++G L L LP CE CL GK +PF K RA LEL+
Sbjct: 412 WHLRLGHINLDRISLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFPLKGNRANDVLELI 471
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
HSD+CGPM+V+AR G YF+TF DYSRYG +YLL +SE + FK F E E + + +
Sbjct: 472 HSDLCGPMSVQARGGFEYFVTFTYDYSRYGYIYLLRRKSECFEKFKAFKAETEKRHGKYI 531
Query: 440 KILRTDRGREYLSDQF 487
K LR+D G EY+S +F
Sbjct: 532 KTLRSDHGGEYISREF 547
>emb|CDF77009.1| hypothetical transposable element-related protein, partial
[Boechera divaricarpa]
Length = 1350
Score = 140 bits (352), Expect = 1e-35
Identities = 63/130 (48%), Positives = 87/130 (66%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPFGKAKRATHPLELVH 262
WH RLGHI ++R+ RL EG+L + N +C C+ GK + A RAT LEL+H
Sbjct: 434 WHKRLGHISRDRIERLVSEGILSSIDFTNCEICVDCIKGKQTKHKKSGAYRATEVLELIH 493
Query: 263 SDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNLK 442
+DICGP + +G YF++FIDDYSRY ++L+ +SE+LD F++F EVENQ ER +K
Sbjct: 494 TDICGPFPTASWNGQQYFISFIDDYSRYAYIFLIHEKSESLDVFRKFKAEVENQLERKIK 553
Query: 443 ILRTDRGREY 472
+R+DRG EY
Sbjct: 554 FVRSDRGGEY 563
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 139 bits (351), Expect = 2e-35
Identities = 65/136 (47%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++ + +L +GLL + CE CL GK + PF G ++RA+ L L+
Sbjct: 84 WHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLI 143
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR YF+TF DD+SRYG VYL+ H+S++ + FK F EV+NQ +++
Sbjct: 144 HTDVCGPMSTSARGNYQYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSI 203
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS F
Sbjct: 204 KALRSDRGGEYLSQVF 219
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 139 bits (351), Expect = 2e-35
Identities = 67/136 (49%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ +L R+GLL + E CL GK + PF G+++RA+ L LV
Sbjct: 419 WHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGLV 478
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF DD+S+YG VYL+ H+SE+ + FK F EV+N + +
Sbjct: 479 HTDVCGPMSSTARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTI 538
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS +F
Sbjct: 539 KYLRSDRGGEYLSLEF 554
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 139 bits (351), Expect = 2e-35
Identities = 67/136 (49%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH RLGHI ++R+ +L R+GLL + E CL GK + PF G+++RA+ L LV
Sbjct: 492 WHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMTKGPFTGQSERASELLGLV 551
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF DD+S+YG VYL+ H+SE+ + FK F EV+N + +
Sbjct: 552 HTDVCGPMSSTARGGFGYFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTI 611
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS +F
Sbjct: 612 KYLRSDRGGEYLSLEF 627
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 138 bits (347), Expect = 7e-35
Identities = 65/136 (47%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH LGHI ++R+ +L R+GLL + CE CL GK + PF G+++RA+ L LV
Sbjct: 318 WHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGLV 377
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF D++SRYG VYL+ H+SE+ + F+ F EV+N + +
Sbjct: 378 HTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTI 437
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS ++
Sbjct: 438 KYLRSDRGGEYLSLEY 453
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 138 bits (347), Expect = 7e-35
Identities = 65/136 (47%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH LGHI ++R+ +L R+GLL + CE CL GK + PF G+++RA+ L LV
Sbjct: 405 WHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMTKAPFTGQSERASELLGLV 464
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+D+CGPM+ AR G YF+TF D++SRYG VYL+ H+SE+ + F+ F EV+N + +
Sbjct: 465 HTDVCGPMSSTARGGFGYFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTI 524
Query: 440 KILRTDRGREYLSDQF 487
K LR+DRG EYLS ++
Sbjct: 525 KYLRSDRGGEYLSLEY 540
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 137 bits (345), Expect = 1e-34
Identities = 66/136 (48%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAKVNLPMCEPCLAGKACRKPF-GKAKRATHPLELV 259
WH R GHI ++ + +L R+GLL + CE CL GK + PF G+++RA+ L LV
Sbjct: 399 WHCRFGHINEKCMEKLNRDGLLHSFGFESFETCESCLLGKMTKAPFTGQSERASELLGLV 458
Query: 260 HSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKERNL 439
H+DICGPM+ A+ G YF+TF DD+SRYG VYL+ H+SE+ + FK+F EV+N +
Sbjct: 459 HTDICGPMSSTAKGGFGYFITFTDDFSRYGYVYLMRHKSESFEKFKKFQNEVQNHLGKTT 518
Query: 440 KILRTDRGREYLSDQF 487
K LR+D G EYLS +F
Sbjct: 519 KYLRSDCGGEYLSLEF 534
>gb|KRZ60189.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trichinella nativa]
Length = 162
Score = 126 bits (316), Expect = 4e-34
Identities = 66/141 (46%), Positives = 88/141 (62%), Gaps = 4/141 (2%)
Frame = +2
Query: 83 WHARLGHIGQERLTRLAREGLLGQLAK--VNLPMCEPCLAGKACRKPFGKA--KRATHPL 250
WH RLGH+ + + +L ++G + + C CL GK CR PF K+ KR+ L
Sbjct: 10 WHRRLGHLSRGSM-KLLQDGQATGIPSDAITKTDCVTCLKGKQCRLPFPKSATKRSEEVL 68
Query: 251 ELVHSDICGPMNVRARHGASYFLTFIDDYSRYGSVYLLSHRSEALDCFKRFLTEVENQKE 430
ELVHSDICGPM + GA YFL+FIDD+SR VY L H++EAL FK F+ VE Q
Sbjct: 69 ELVHSDICGPMQAASVGGARYFLSFIDDFSRKSFVYFLKHKNEALPKFKDFIAMVERQTS 128
Query: 431 RNLKILRTDRGREYLSDQFRQ 493
+ +K LRTD GREY+++ F +
Sbjct: 129 KRVKCLRTDNGREYVNNMFAE 149