BLASTX nr result
ID: Rehmannia27_contig00036752
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00036752
(1470 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera] 100 7e-36
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera] 100 1e-35
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 104 2e-35
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera] 98 1e-34
gb|KYP41992.1| Retrovirus-related Pol polyprotein from transposo... 101 2e-32
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 100 3e-32
gb|KYP41330.1| Retrovirus-related Pol polyprotein from transposo... 102 9e-32
gb|KYP33156.1| Retrovirus-related Pol polyprotein from transposo... 100 6e-31
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera] 111 1e-30
emb|CAN66871.1| hypothetical protein VITISV_021425 [Vitis vinifera] 108 1e-30
gb|KYP65916.1| Retrovirus-related Pol polyprotein from transposo... 99 2e-30
ref|XP_009356290.1| PREDICTED: retrovirus-related Pol polyprotei... 105 9e-30
gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposo... 101 4e-29
gb|KYP53945.1| Retrovirus-related Pol polyprotein from transposo... 106 7e-29
gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposo... 101 1e-28
gb|KYP39385.1| Retrovirus-related Pol polyprotein from transposo... 103 5e-28
emb|CAN82144.1| hypothetical protein VITISV_043495 [Vitis vinifera] 101 6e-28
gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposo... 96 6e-28
gb|KYP41863.1| Retrovirus-related Pol polyprotein from transposo... 104 7e-28
gb|KYP58379.1| Retrovirus-related Pol polyprotein from transposo... 99 7e-28
>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
Length = 1274
Score = 100 bits (248), Expect(3) = 7e-36
Identities = 43/71 (60%), Positives = 55/71 (77%)
Frame = +3
Query: 471 LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFSTFLQFKVLVERQS 650
LE++H+D+CGPMQT + G RYF+LF DD++RM W+YFL K+E F TF +FK VE+QS
Sbjct: 498 LEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQS 557
Query: 651 GFLIKTLRTDR 683
G IK LRTDR
Sbjct: 558 GKCIKVLRTDR 568
Score = 71.6 bits (174), Expect(3) = 7e-36
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +2
Query: 137 IERFFIHFDDGRCQILDKKKNAIIIHTDMK-NKIFPLMMPLNENCALELEKADLSQLWHL 313
+ + I FD C I DKK + II++ M NK+FPL + E AL +++ S LWHL
Sbjct: 383 VSGYSILFDGATCVIKDKKSDQIIVNVRMAANKLFPLEVSSIEKHALVVKETSESNLWHL 442
Query: 314 RYGHLNSKGRILHKEKNMMIGLPCIQKTD 400
RYGHLN KG L +K M+ GLP I +
Sbjct: 443 RYGHLNVKGLKLLSKKEMVFGLPKIDSVN 471
Score = 29.3 bits (64), Expect(3) = 7e-36
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 382 LHSENRSEGCIYGKMHKLLFPK 447
+ S N EGCIYGK K FPK
Sbjct: 467 IDSVNVCEGCIYGKQSKKPFPK 488
>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
Length = 1472
Score = 100 bits (248), Expect(3) = 1e-35
Identities = 43/71 (60%), Positives = 55/71 (77%)
Frame = +3
Query: 471 LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFSTFLQFKVLVERQS 650
LE++H+D+CGPMQT + G RYF+LF DD++RM W+YFL K+E F TF +FK VE+QS
Sbjct: 483 LEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQS 542
Query: 651 GFLIKTLRTDR 683
G IK LRTDR
Sbjct: 543 GKCIKVLRTDR 553
Score = 71.2 bits (173), Expect(3) = 1e-35
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Frame = +2
Query: 137 IERFFIHFDDGRCQILDKKKNAIIIHTDMK-NKIFPLMMPLNENCALELEKADLSQLWHL 313
+ + I FD C I DKK + II+ M NK+FPL + E AL +++ S LWHL
Sbjct: 368 VSGYSILFDGATCVIKDKKSDQIIVBVRMAANKLFPLEVSSIEKHALVVKETSESNLWHL 427
Query: 314 RYGHLNSKGRILHKEKNMMIGLPCIQKTD 400
RYGHLN KG L +K M+ GLP I +
Sbjct: 428 RYGHLNVKGLKLLSKKEMVFGLPKIDSVN 456
Score = 29.3 bits (64), Expect(3) = 1e-35
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 382 LHSENRSEGCIYGKMHKLLFPK 447
+ S N EGCIYGK K FPK
Sbjct: 452 IDSVNVCEGCIYGKQSKKPFPK 473
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 104 bits (260), Expect(4) = 2e-35
Identities = 57/121 (47%), Positives = 71/121 (58%), Gaps = 5/121 (4%)
Frame = +3
Query: 444 KSFM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAF 608
KSF GK W LELVH+D+CGPM+ + G RYF++F DDY+R W+YFL KSE F
Sbjct: 489 KSFPVGKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYFLKFKSETF 548
Query: 609 STFLQFKVLVERQSGFLIKTLRTDREKFDEKDRKRLFIGYNNESKRMKDIWTSYQNPVPP 788
TF +FK VE QSG IK+LRTDR + LF N + + +T QN V
Sbjct: 549 ETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAPYTPEQNGVAE 608
Query: 789 R 791
R
Sbjct: 609 R 609
Score = 63.2 bits (152), Expect(4) = 2e-35
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKKNAIIIHTDM-KNKIFPLMMPLNENCALELEKADLSQLWHLRYG 322
+ + F D C I DK+ I M +NK+FPL + N AL +++ + + LWHLRYG
Sbjct: 391 YSVVFYDNACDIKDKESGRTIARVPMTQNKMFPLDISNVGNSALVVKEKNETNLWHLRYG 450
Query: 323 HLNSKGRILHKEKNMMIGLPCIQKTD 400
HLN L +K+M+IGLP I++ D
Sbjct: 451 HLNVNWLKLLVQKDMVIGLPNIKELD 476
Score = 27.7 bits (60), Expect(4) = 2e-35
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 78 YGVLYVTDLSHNLLIVSQLV*KDFSFI 158
Y V YV L+HNLL V QL+ +S +
Sbjct: 368 YDVQYVPTLAHNLLSVGQLMTSGYSVV 394
Score = 24.3 bits (51), Expect(4) = 2e-35
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 403 EGCIYGKMHKLLFP 444
EGCIYGK + FP
Sbjct: 479 EGCIYGKQTRKSFP 492
>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
Length = 1183
Score = 98.2 bits (243), Expect(3) = 1e-34
Identities = 42/71 (59%), Positives = 55/71 (77%)
Frame = +3
Query: 471 LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFSTFLQFKVLVERQS 650
LE++H+D+CGPMQT + G RYF+LF +D++RM W+YFL K+E F TF +FK VE+QS
Sbjct: 432 LEIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSWVYFLQSKAETFETFKKFKAFVEKQS 491
Query: 651 GFLIKTLRTDR 683
G IK LRTDR
Sbjct: 492 GKCIKVLRTDR 502
Score = 69.7 bits (169), Expect(3) = 1e-34
Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +2
Query: 137 IERFFIHFDDGRCQILDKKKNAIIIHTDMK-NKIFPLMMPLNENCALELEKADLSQLWHL 313
+ + I FD C I DKK + II M NK+FPL + E AL +++ S LWHL
Sbjct: 317 VSGYSILFDGATCVIKDKKSDQIIFDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHL 376
Query: 314 RYGHLNSKGRILHKEKNMMIGLPCIQKTD 400
RYGHLN KG L +K M+ GLP I +
Sbjct: 377 RYGHLNVKGLKLLSKKEMVFGLPKIDSVN 405
Score = 29.3 bits (64), Expect(3) = 1e-34
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 382 LHSENRSEGCIYGKMHKLLFPK 447
+ S N EGCIYGK K FPK
Sbjct: 401 IDSVNVCEGCIYGKQSKKPFPK 422
>gb|KYP41992.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 465
Score = 101 bits (252), Expect(4) = 2e-32
Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 5/85 (5%)
Frame = +3
Query: 450 FM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFST 614
F GK W LEL+H+DICGPM T + N RYFILFIDD++RM W+YF+ KS+ F
Sbjct: 363 FSTGKAWRAKDLLELIHTDICGPMWTSSLHNNRYFILFIDDFSRMTWVYFIKAKSDVFGN 422
Query: 615 FLQFKVLVERQSGFLIKTLRTDREK 689
F +FK LVE+QSG IK LR+DR K
Sbjct: 423 FKKFKTLVEKQSGKQIKVLRSDRGK 447
Score = 60.8 bits (146), Expect(4) = 2e-32
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKK-NAIIIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYG 322
+ +HF+ C+I D KK + + +N+ FP+ M + N A+++E D S LWH R+G
Sbjct: 263 YTLHFEGDTCKIYDNKKLENGRVKMEKRNRSFPISMRQDPNIAMKIEVDD-SWLWHRRFG 321
Query: 323 HLNSKGRILHKEKNMMIGLPCIQKTDQ 403
H N L +KNMM LPC+++ +
Sbjct: 322 HFNMHALKLLYQKNMMRDLPCLKENSE 348
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 84 VLYVTDLSHNLLIVSQLV*KDFSFILMMEG 173
VL V +L NLL +SQ++ K S+ L EG
Sbjct: 242 VLLVPNLKENLLSISQMMEK--SYTLHFEG 269
Score = 23.5 bits (49), Expect(4) = 2e-32
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 403 EGCIYGKMHKLLF 441
EGC+ GK H+L F
Sbjct: 351 EGCLLGKQHRLPF 363
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 100 bits (248), Expect(3) = 3e-32
Identities = 43/71 (60%), Positives = 55/71 (77%)
Frame = +3
Query: 471 LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFSTFLQFKVLVERQS 650
LE++H+D+CGPMQT + G RYF+LF DD++RM W+YFL K+E F TF +FK VE+QS
Sbjct: 609 LEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQS 668
Query: 651 GFLIKTLRTDR 683
G IK LRTDR
Sbjct: 669 GKCIKVLRTDR 679
Score = 59.3 bits (142), Expect(3) = 3e-32
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +2
Query: 185 DKKKNAIIIHTDMK-NKIFPLMMPLNENCALELEKADLSQLWHLRYGHLNSKGRILHKEK 361
DKK + II+ M NK+FPL + E AL +++ S LWHLRYGHLN KG L +K
Sbjct: 510 DKKSDQIIVDVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKK 569
Query: 362 NMMIGLPCIQKTD 400
M+ LP I +
Sbjct: 570 EMVFELPKIDSVN 582
Score = 29.3 bits (64), Expect(3) = 3e-32
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 382 LHSENRSEGCIYGKMHKLLFPK 447
+ S N EGCIYGK K FPK
Sbjct: 578 IDSVNVCEGCIYGKQSKKPFPK 599
>gb|KYP41330.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 604
Score = 102 bits (254), Expect(3) = 9e-32
Identities = 50/85 (58%), Positives = 60/85 (70%), Gaps = 5/85 (5%)
Frame = +3
Query: 450 FM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFST 614
F GK W LEL+H DICGPM+T + N RYFILFIDD++RM W+YF+ KSE F
Sbjct: 425 FSTGKAWRVKDLLELIHIDICGPMRTSSLHNNRYFILFIDDFSRMTWVYFIKAKSEVFGI 484
Query: 615 FLQFKVLVERQSGFLIKTLRTDREK 689
F +FK LVE+QSG IK LR+DR K
Sbjct: 485 FKKFKTLVEKQSGKQIKVLRSDRGK 509
Score = 61.2 bits (147), Expect(3) = 9e-32
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKKNAI-IIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYG 322
+ +HF+ C+I D KK I + + +N+ FP+ + N A++ E D S LWH R+G
Sbjct: 325 YTLHFEGDTCKIYDNKKLEIGRVKMEKRNRSFPISLRQGPNIAMKAEVDD-SWLWHRRFG 383
Query: 323 HLNSKGRILHKEKNMMIGLPCIQKTDQ 403
H N+ L +KNMM LPC+++ +
Sbjct: 384 HFNTHALKLLYQKNMMRDLPCLKENSE 410
Score = 23.5 bits (49), Expect(3) = 9e-32
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 403 EGCIYGKMHKLLF 441
EGC+ GK H+L F
Sbjct: 413 EGCLLGKQHRLPF 425
>gb|KYP33156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 570
Score = 99.8 bits (247), Expect(3) = 6e-31
Identities = 48/85 (56%), Positives = 61/85 (71%), Gaps = 5/85 (5%)
Frame = +3
Query: 450 FM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFST 614
F GK W LEL+H++ICGPM+T + N RYFILFIDD++RM W+YF+ KSE F
Sbjct: 357 FSTGKAWRAKDLLELIHTNICGPMRTSSLHNNRYFILFIDDFSRMTWVYFIKAKSEVFGI 416
Query: 615 FLQFKVLVERQSGFLIKTLRTDREK 689
F +FK LVE+QSG IK LR++R K
Sbjct: 417 FKKFKTLVEKQSGKQIKVLRSNRGK 441
Score = 61.2 bits (147), Expect(3) = 6e-31
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKKNAI-IIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYG 322
+ +HF+ C+I D KK I + + +N+ FP+ + N A++ E D S LWH R+G
Sbjct: 257 YTLHFEGDTCKIYDNKKLEIGRVKMEKRNRSFPISLRQGPNIAMKAEVDD-SWLWHRRFG 315
Query: 323 HLNSKGRILHKEKNMMIGLPCIQKTDQ 403
H N+ L +KNMM LPC+++ +
Sbjct: 316 HFNTHALKLLYQKNMMRDLPCLKENSE 342
Score = 23.5 bits (49), Expect(3) = 6e-31
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 403 EGCIYGKMHKLLF 441
EGC+ GK H+L F
Sbjct: 345 EGCLLGKQHRLPF 357
>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
Length = 1424
Score = 111 bits (277), Expect(2) = 1e-30
Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Frame = +3
Query: 444 KSFM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAF 608
+SF G W LELVH+DICGPM TP+ GN +YF+LFIDD+TRM W++F+ QKSE F
Sbjct: 578 QSFPKGVAWRAKKVLELVHTDICGPMSTPSQGNNKYFVLFIDDFTRMTWVFFMKQKSEVF 637
Query: 609 STFLQFKVLVERQSGFLIKTLRTDREKFDEKDRKRLFIGYNNESKRMKDIWTSYQNPVPP 788
S F +FK VE+QSG IKTLR+DR + F +++ +T QN V
Sbjct: 638 SIFKKFKSFVEKQSGCYIKTLRSDRGMEYTSSQFGNFCEDEGVERQLTVAYTPQQNGVVE 697
Query: 789 R 791
R
Sbjct: 698 R 698
Score = 51.6 bits (122), Expect(2) = 1e-30
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = +2
Query: 152 IHFDDGRCQILDKKKNAIIIHTDM--KNKIFPLMMPLNENCALELEKADLSQLWHLRYGH 325
+HF++ C I DK++ ++ KN+ FP++ EN AL +E + + LWH R+GH
Sbjct: 501 LHFENNECTIYDKEQRRNLVKKIKMEKNRSFPIVFKYVENVALRMEDVEEAWLWHRRFGH 560
Query: 326 LN 331
LN
Sbjct: 561 LN 562
>emb|CAN66871.1| hypothetical protein VITISV_021425 [Vitis vinifera]
Length = 338
Score = 108 bits (270), Expect(2) = 1e-30
Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Frame = +3
Query: 444 KSFM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAF 608
+SF+ G W LEL+H+DICGPM P+ GN +YF+LFIDD+TRM W++F+ QKSE F
Sbjct: 234 QSFLKGVAWRAKKVLELIHTDICGPMSIPSQGNNKYFVLFIDDFTRMTWVFFMKQKSEVF 293
Query: 609 STFLQFKVLVERQSGFLIKTLRTDR 683
S F +FK VE+QSG IKTLR+D+
Sbjct: 294 SIFKKFKSFVEKQSGCYIKTLRSDK 318
Score = 54.3 bits (129), Expect(2) = 1e-30
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +2
Query: 152 IHFDDGRCQILD--KKKNAIIIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYGH 325
+HF+ C I D +++N + KN+ FP++ EN AL +E + + LWH R+GH
Sbjct: 135 LHFEYNECTIYDNEQRRNLVKKIKMEKNRSFPIVFKYAENVALRMEDVEEAWLWHRRFGH 194
Query: 326 LNSKGRILHKEKNMMIGLP 382
LN + ++ M+ GLP
Sbjct: 195 LNFNSLKMLYQRKMVQGLP 213
>gb|KYP65916.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 464
Score = 99.4 bits (246), Expect(3) = 2e-30
Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 5/85 (5%)
Frame = +3
Query: 450 FM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFST 614
F GK W LEL+H++ICGPM+ + N RYFILFIDD++RM W+YF+ KSE F
Sbjct: 363 FSTGKAWSAKDLLELIHTNICGPMRASSFHNNRYFILFIDDFSRMTWVYFIKAKSEVFGI 422
Query: 615 FLQFKVLVERQSGFLIKTLRTDREK 689
F +FK LVE+QSG IK LR+DR K
Sbjct: 423 FKKFKTLVEKQSGKKIKVLRSDRGK 447
Score = 60.8 bits (146), Expect(3) = 2e-30
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKKNAI-IIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYG 322
+ +HF+ C+I D KK I + + +N+ FP+ + N A++ E D S LWH R+G
Sbjct: 263 YTLHFEGDSCKIYDNKKLEIGRVKMEKRNRSFPISLRQGLNFAMKAEVDD-SWLWHQRFG 321
Query: 323 HLNSKGRILHKEKNMMIGLPCIQKTDQ--KVVFMGK 424
H N+ L +KNMM LPC+++ + + F+GK
Sbjct: 322 HFNTHALNLLYKKNMMRDLPCLKENSEACEGCFLGK 357
Score = 22.7 bits (47), Expect(3) = 2e-30
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 403 EGCIYGKMHKLLF 441
EGC GK H+L F
Sbjct: 351 EGCFLGKQHRLPF 363
>ref|XP_009356290.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Pyrus x bretschneideri]
Length = 798
Score = 105 bits (261), Expect(2) = 9e-30
Identities = 55/120 (45%), Positives = 73/120 (60%), Gaps = 5/120 (4%)
Frame = +3
Query: 447 SFM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFS 611
SF G W L+L+H+D+CGPM+TPT RYF+LFIDD TRM+W+YF+ KSE F+
Sbjct: 521 SFETGTAWRASQPLDLIHTDVCGPMKTPTLSGNRYFLLFIDDCTRMVWVYFMRNKSEVFT 580
Query: 612 TFLQFKVLVERQSGFLIKTLRTDREKFDEKDRKRLFIGYNNESKRMKDIWTSYQNPVPPR 791
F +FKV+VE QSG IK LR+DR + F + K++ +T QN V R
Sbjct: 581 IFKKFKVMVELQSGLKIKRLRSDRGGEFTSIEFQEFCEWAGLQKQLTVAYTPQQNGVAER 640
Score = 55.1 bits (131), Expect(2) = 9e-30
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKK--KNAIIIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRY 319
+F+ F D +I D + +N + +NK FPLM+ ++ AL+ A+ S LWH R+
Sbjct: 420 YFLLFGDDMVEIFDDRSLQNLVTQVGMTENKSFPLMLDYTDSVALKASVAENSWLWHKRF 479
Query: 320 GHLNSKGRILHKEKNMMIGLPCIQKTDQ 403
GHLN + M+ GLP IQ+T +
Sbjct: 480 GHLNFHSLKNFERLQMVTGLPEIQETKE 507
>gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 884
Score = 101 bits (252), Expect(3) = 4e-29
Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 5/120 (4%)
Frame = +3
Query: 447 SFM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFS 611
SF GK W L+LVHSDICGP+ + GNKRYFI+FIDD++R W+YFL +KSEAF
Sbjct: 454 SFPHGKAWRAQQILQLVHSDICGPINPTSNGNKRYFIIFIDDHSRKTWVYFLQEKSEAFL 513
Query: 612 TFLQFKVLVERQSGFLIKTLRTDREKFDEKDRKRLFIGYNNESKRMKDIWTSYQNPVPPR 791
F FK VE++SG I+ LRTDR F + +++ +T QN V R
Sbjct: 514 IFKSFKSRVEKESGKYIQILRTDRGGEFNSHNFASFCELHGIQRQLTAAYTPQQNGVAER 573
Score = 55.1 bits (131), Expect(3) = 4e-29
Identities = 30/81 (37%), Positives = 41/81 (50%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKKNAIIIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYGH 325
+ I RCQI +K I+ N++FP+ + + D + LWHLRYGH
Sbjct: 355 YIIIIQQSRCQIHHPEKGLIVDAKMTANRMFPMHIQYDIQKCFSTRVQDPTWLWHLRYGH 414
Query: 326 LNSKGRILHKEKNMMIGLPCI 388
L+ KG EKNM+ GLP I
Sbjct: 415 LSFKGLKTLHEKNMVEGLPKI 435
Score = 21.6 bits (44), Expect(3) = 4e-29
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 403 EGCIYGKMHKLLFP 444
E CI GK H+ FP
Sbjct: 443 EDCIVGKQHRDSFP 456
>gb|KYP53945.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 558
Score = 106 bits (265), Expect(2) = 7e-29
Identities = 54/109 (49%), Positives = 70/109 (64%)
Frame = +3
Query: 471 LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFSTFLQFKVLVERQS 650
LEL+H+D+CGPM+TP+ N RYFILFI+D++RM W+YFL KSE F F +FK LVE+QS
Sbjct: 417 LELIHTDVCGPMRTPSHTNNRYFILFINDFSRMTWVYFLKTKSEVFGIFKKFKALVEKQS 476
Query: 651 GFLIKTLRTDREKFDEKDRKRLFIGYNNESKRMKDIWTSYQNPVPPRLL 797
G IK LR+DR K F +++ +T QN V RLL
Sbjct: 477 GKQIKVLRSDRGKEYTSREFDKFCDDEGIERQLTIAYTPQQNGVLERLL 525
Score = 50.4 bits (119), Expect(2) = 7e-29
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +2
Query: 143 RFFIHFDDGRCQILDKKKNAI-IIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRY 319
R+F+ F+ C+I D K + + + +N+ FP+ N A+++E D S LWH R+
Sbjct: 304 RYFLLFERDICKIYDSKMLEVGQVKMEKRNRNFPISFKFGTNIAIKIEVDD-SWLWHQRF 362
Query: 320 GHLNSKGRILHKEKNMMIGLPCIQKTDQKVVFMGKCTSFYFQKFH 454
GH N +K M LP +++ ++ C F +K H
Sbjct: 363 GHFNIHALKHLHQKGMTRDLPSLKENNE------ACEGFLLEKQH 401
>gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 1120
Score = 101 bits (251), Expect(2) = 1e-28
Identities = 49/86 (56%), Positives = 61/86 (70%), Gaps = 5/86 (5%)
Frame = +3
Query: 447 SFM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFS 611
SF K W LEL+H+++CGPM+TP+ N RYFILFI D++RM W+YFL KSE F
Sbjct: 413 SFSTSKAWRAKDLLELIHTNVCGPMRTPSHTNNRYFILFIYDFSRMTWVYFLKTKSEVFG 472
Query: 612 TFLQFKVLVERQSGFLIKTLRTDREK 689
F +FK LVE+QSG IK LR+DR K
Sbjct: 473 IFKKFKALVEKQSGKQIKVLRSDRGK 498
Score = 55.1 bits (131), Expect(2) = 1e-28
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKKNAI-IIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYG 322
+ +HF+ C+I D K+ I + + +N+IFPL N A+ +E D S LWH R+G
Sbjct: 314 YSLHFERDICKIYDSKRVEIGQVKMEKRNRIFPLSFNRGTNIAMNVEVDD-SWLWHRRFG 372
Query: 323 HLNSKGRILHKEKNMMIGLPCIQKTDQ 403
H N L +K MM LP +++ ++
Sbjct: 373 HFNIHALKLLHQKGMMRDLPSLKENNE 399
>gb|KYP39385.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 723
Score = 103 bits (256), Expect(2) = 5e-28
Identities = 49/85 (57%), Positives = 63/85 (74%)
Frame = +3
Query: 435 SISKSFM*GKMWLELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFST 614
S SK++ K LEL+H+D+CGPM+TP+ N RYFILFIDD+++M W+YFL KSE F
Sbjct: 478 STSKAWR-AKNLLELIHTDVCGPMRTPSHTNNRYFILFIDDFSKMTWVYFLKTKSEVFGI 536
Query: 615 FLQFKVLVERQSGFLIKTLRTDREK 689
F +FK LVE+QSG IK R+DR K
Sbjct: 537 FKKFKALVEKQSGKQIKVFRSDRGK 561
Score = 51.2 bits (121), Expect(2) = 5e-28
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +2
Query: 143 RFFIHFDDGRCQILDKKKNAI-IIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRY 319
R+ + F+ C+I D K+ + + + +NK FP+ N A+++E D S LWH R+
Sbjct: 376 RYSLLFERDICKIYDSKRLKVGQVKMEKRNKSFPISFKPGTNIAMKIEVDD-SWLWHRRF 434
Query: 320 GHLNSKGRILHKEKNMMIGLPCIQKTDQ 403
GH N L +K MM LP +++ ++
Sbjct: 435 GHFNIHALKLLHQKGMMRDLPTLKENNE 462
>emb|CAN82144.1| hypothetical protein VITISV_043495 [Vitis vinifera]
Length = 567
Score = 101 bits (251), Expect(2) = 6e-28
Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 5/118 (4%)
Frame = +3
Query: 444 KSFM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAF 608
+SF G W LEL+H+DICGPM TP+ GN +YF+LFIDD+ R+ W++F+ Q S+ F
Sbjct: 171 QSFXKGVAWRAKKVLELIHTDICGPMSTPSHGNNKYFVLFIDDFXRITWVFFVKQTSKVF 230
Query: 609 STFLQFKVLVERQSGFLIKTLRTDREKFDEKDRKRLFIGYNNESKRMKDIWTSYQNPV 782
S F +FK VE+QSG I TLR+DR + F +++ +T QN V
Sbjct: 231 SIFKKFKTFVEKQSGCYIMTLRSDRGMKYTSSQFGNFCEDEGVERQLSXAYTFQQNGV 288
Score = 52.8 bits (125), Expect(2) = 6e-28
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +2
Query: 152 IHFDDGRCQILDKKKNAIIIHTDM--KNKIFPLMMPLNENCALELEKADLSQLWHLRYGH 325
+HF+D C I DK+K ++ KNK P++ EN AL E + + LWH R+GH
Sbjct: 72 LHFEDNECIIYDKEKRRNLVKKIKMEKNKSIPIVFKYAENVALRNEDVEEAWLWHRRFGH 131
Query: 326 LNSKGRILHKEKNMMIGLP 382
LN + ++ M+ LP
Sbjct: 132 LNFNRLKMLCQRKMVQRLP 150
>gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 508
Score = 95.5 bits (236), Expect(2) = 6e-28
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Frame = +3
Query: 471 LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFSTFLQFKVLVERQS 650
LEL+HSDICGP + N+RYFI FIDD++R W++FL +K+EAF TF +F+++VE++S
Sbjct: 155 LELIHSDICGPSTPTSNSNRRYFITFIDDFSRKTWVFFLCEKAEAFETFKRFRLMVEKES 214
Query: 651 GFLIKTLRTDR-EKFDEKDRKRLFIGYNNESKRMKDIWTSYQNPVPPR 791
+I LRTDR +F+ D F N +++ +T QN V R
Sbjct: 215 NCVISCLRTDRGGEFNSNDFNE-FCTMNGIRRQLTAAYTPQQNGVAER 261
Score = 58.5 bits (140), Expect(2) = 6e-28
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +2
Query: 152 IHFDDGRCQILDKKKNAIIIHTDMKNKIFPLMMPL--NENCALELEKADLSQLWHLRYGH 325
I FDD +C++ K+K ++ N++FP+ L E ++ D +++WH RYGH
Sbjct: 43 IIFDDDKCRVYHKEKGLLMTSYMANNRMFPIKAKLVITEAACIQTSNVDSTEMWHKRYGH 102
Query: 326 LNSKGRILHKEKNMMIGLPCIQKTDQ 403
L+ G L +K M+ GLP +++ D+
Sbjct: 103 LSYGGLKLLNQKAMVKGLPELKEMDK 128
>gb|KYP41863.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan] gi|1012330340|gb|KYP41870.1|
Retrovirus-related Pol polyprotein from transposon TNT
1-94 [Cajanus cajan]
Length = 617
Score = 104 bits (260), Expect(3) = 7e-28
Identities = 56/119 (47%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Frame = +3
Query: 450 FM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFST 614
F GK W LEL+H+DICGPMQ + N RYFILFIDD++RM+W+YF+ KSE F
Sbjct: 449 FSTGKAWRAKDLLELIHTDICGPMQMSSLHNNRYFILFIDDFSRMIWVYFIKAKSEVFGI 508
Query: 615 FLQFKVLVERQSGFLIKTLRTDREKFDEKDRKRLFIGYNNESKRMKDIWTSYQNPVPPR 791
F +FK LVE+QSG IK LR+DR K F K++ ++ QN V R
Sbjct: 509 FKKFKTLVEKQSGKQIKVLRSDRGKEYTSREFNKFCEDEGIEKQLTVAYSPQQNGVSER 567
Score = 45.8 bits (107), Expect(3) = 7e-28
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKKNAI-IIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYG 322
+ +HF+ C+I D K+ I + + + FP+ + A++ E D S LWH +G
Sbjct: 349 YTLHFEGDTCKIYDNKRLEIGRVKMEKRTISFPISLRQGPKFAMKAE-VDNSWLWHRIFG 407
Query: 323 HLNSKGRILHKEKNMMIGLPCIQK 394
H N+ L +KNMM L C+++
Sbjct: 408 HFNTHALKLLYQKNMMRDLLCLKE 431
Score = 23.5 bits (49), Expect(3) = 7e-28
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 403 EGCIYGKMHKLLF 441
EGC+ GK H+L F
Sbjct: 437 EGCLLGKQHRLPF 449
>gb|KYP58379.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 99.4 bits (246), Expect(3) = 7e-28
Identities = 47/86 (54%), Positives = 60/86 (69%), Gaps = 5/86 (5%)
Frame = +3
Query: 447 SFM*GKMW-----LELVHSDICGPMQTPTPGNKRYFILFIDDYTRMMWIYFLNQKSEAFS 611
SF K W LEL+H+D+CG M+TP+ N RYFILFID+++RM W+YFL KSE F
Sbjct: 392 SFSTSKAWRAKDSLELIHTDVCGSMRTPSHTNNRYFILFIDNFSRMTWVYFLKTKSEVFG 451
Query: 612 TFLQFKVLVERQSGFLIKTLRTDREK 689
F +FK L+E+QSG K LR+DR K
Sbjct: 452 IFKKFKALIEKQSGKQTKVLRSDRGK 477
Score = 50.8 bits (120), Expect(3) = 7e-28
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 146 FFIHFDDGRCQILDKKKNAI-IIHTDMKNKIFPLMMPLNENCALELEKADLSQLWHLRYG 322
+ +HF+ C+I D K+ I + + +N+ FPL N A+++E D S LWH R+G
Sbjct: 293 YSLHFERDICKIYDSKRVEIGQVKMEKRNRSFPLSFNHGTNIAMKVEVDD-SWLWHRRFG 351
Query: 323 HLNSKGRILHKEKNMMIGLPCIQK 394
H N L +K MM LP +++
Sbjct: 352 HFNIHALKLLHQKGMMRDLPNLKE 375
Score = 23.9 bits (50), Expect(3) = 7e-28
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 403 EGCIYGKMHKLLF 441
EGC+ GK H+L F
Sbjct: 381 EGCLLGKQHRLSF 393