BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00030032
         (787 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010675350.1| PREDICTED: uncharacterized protein LOC104891...   253   3e-80
gb|KYP41992.1| Retrovirus-related Pol polyprotein from transposo...   199   2e-57
emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]   207   2e-57
gb|KYP41330.1| Retrovirus-related Pol polyprotein from transposo...   201   3e-57
emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   204   2e-56
gb|KYP33156.1| Retrovirus-related Pol polyprotein from transposo...   197   7e-56
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   199   1e-54
gb|KYP65916.1| Retrovirus-related Pol polyprotein from transposo...   191   2e-54
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   198   3e-54
gb|KYP76948.1| Retrovirus-related Pol polyprotein from transposo...   188   6e-54
emb|CAN60751.1| hypothetical protein VITISV_044288 [Vitis vinifera]   192   8e-54
gb|KYP43166.1| Retrovirus-related Pol polyprotein from transposo...   185   1e-52
gb|KYP58379.1| Retrovirus-related Pol polyprotein from transposo...   187   1e-52
gb|KYP52821.1| Copia protein [Cajanus cajan]                          186   2e-52
gb|KYP39385.1| Retrovirus-related Pol polyprotein from transposo...   188   1e-51
gb|KYP64149.1| Retrovirus-related Pol polyprotein from transposo...   180   1e-51
ref|XP_007033616.1| Uncharacterized protein TCM_019778 [Theobrom...   187   1e-51
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group...   189   3e-51
gb|KYP34496.1| Transposon Ty3-G Gag-Pol polyprotein, partial [Ca...   188   7e-51
gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposo...   187   1e-50

>ref|XP_010675350.1| PREDICTED: uncharacterized protein LOC104891365 [Beta vulgaris
           subsp. vulgaris]
          Length = 326

 Score =  253 bits (646), Expect = 3e-80
 Identities = 125/259 (48%), Positives = 165/259 (63%), Gaps = 3/259 (1%)
 Frame = +1

Query: 19  CVICKKSNHESKDCFFRCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSS 198
           C +CKK+ H ++DC  +C RC+   H +KD WF+               Q     LFY+ 
Sbjct: 63  CNLCKKNGHNTQDCRSKCNRCRKHTHFEKDRWFRQKEEANFAENKEPKDQ-----LFYTC 117

Query: 199 ANC--DSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSK 372
            N   +S ++WY+DSGCSNHMTGN++ FV L+ NI +QI LGDG+ +   GKGTI ++++
Sbjct: 118 LNAHQESNDLWYIDSGCSNHMTGNKNSFVSLDENIKTQITLGDGSNQELAGKGTIVVRAR 177

Query: 373 DGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDVIASTEM-ENN 549
           + + KFI  V YVP L+ NLLSVGQL+Q+ + V FD   C I DK+   +I +T+M    
Sbjct: 178 NDSSKFIHKVFYVPRLAQNLLSVGQLMQRSYMVKFDANKCLIFDKRKGQLITNTQMAPTK 237

Query: 550 IFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCE 729
           IFPL M L  N AL     D S LWHLR+GHLN   L LLK K+MV GLP I    ++CE
Sbjct: 238 IFPLRMQLEHNVALS-SMVDESILWHLRFGHLNFNSLKLLKRKEMVTGLPPISNERKICE 296

Query: 730 GCIYGKMHKLPFPKNSWRA 786
           GCIYG+MH+LPFP +SWRA
Sbjct: 297 GCIYGEMHRLPFPTSSWRA 315


>gb|KYP41992.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 465

 Score =  199 bits (505), Expect = 2e-57
 Identities = 105/269 (39%), Positives = 160/269 (59%), Gaps = 8/269 (2%)
 Frame = +1

Query: 4   DDNPTCVICKKSNHESKDCFFR----CKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQS 171
           ++ P C IC ++NH  KDC +R    C+ C    H +K C  +N                
Sbjct: 110 NEYPPCGICNRTNHAEKDCRYRGKPQCRHCNKVGHVEKYCRNKNKHQVNFVEEIDG---- 165

Query: 172 KEEILFYSS--ANCDSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKG 345
            E+ LFY+S  +N ++   WYLDSG SNHM  +  IF D++ ++  ++ +G+ T   +KG
Sbjct: 166 -EQHLFYASQDSNSETSGSWYLDSGYSNHMAKDASIFKDIDESVKVKVRMGNDTIVESKG 224

Query: 346 KGTIAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILD-KKMNDV 522
           KGT+ +++K G +  ITDVL VPNL  NLLS+ Q+++K +++HF+  TC+I D KK+ + 
Sbjct: 225 KGTVMVETKKGTR-LITDVLLVPNLKENLLSISQMMEKSYTLHFEGDTCKIYDNKKLENG 283

Query: 523 IASTEMENNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPD 702
               E  N  FP++M  + N A+K+E  D S LWH R+GH N   L LL +K M+  LP 
Sbjct: 284 RVKMEKRNRSFPISMRQDPNIAMKIE-VDDSWLWHRRFGHFNMHALKLLYQKNMMRDLPC 342

Query: 703 IQKINQVCEGCIYGKMHKLPFPK-NSWRA 786
           +++ ++ CEGC+ GK H+LPF    +WRA
Sbjct: 343 LKENSEACEGCLLGKQHRLPFSTGKAWRA 371


>emb|CAN79116.1| hypothetical protein VITISV_002093 [Vitis vinifera]
          Length = 1109

 Score =  207 bits (526), Expect = 2e-57
 Identities = 111/252 (44%), Positives = 149/252 (59%), Gaps = 1/252 (0%)
 Frame = +1

Query: 31  KKSNHESKDCFFRCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSANCD 210
           +KS ++S     +C  CK   H Q +CW +               Q K   + Y+     
Sbjct: 232 EKSRNKSN---IQCYYCKRFGHVQAECWKKERQEKQANYVEQEEDQVKL-FMAYNEEVVX 287

Query: 211 SKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNKKF 390
           S N+W+LDSGCSNHMTG + +F +L+ +   ++ LGD  Q   +GKGT+A+ +  GN K 
Sbjct: 288 SNNIWFLDSGCSNHMTGIKSLFKELDESHKLKVKLGDDKQVXVEGKGTVAVNNGHGNVKL 347

Query: 391 ITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDVIASTEM-ENNIFPLTM 567
           + +V ++P+L+ NLLSVGQL+   +S+ FD  TC I DKK + +I    M  N +FPL +
Sbjct: 348 LYNVYFIPSLTQNLLSVGQLMVSGYSILFDGSTCVIKDKKFDQIIVDVRMAANKLFPLEV 407

Query: 568 PLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCEGCIYGK 747
              E  AL V+    SNLWHLRYGHLN KGL LL +K+MV GLP I  +N VCEGCIYGK
Sbjct: 408 SSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVN-VCEGCIYGK 466

Query: 748 MHKLPFPKNSWR 783
             K PFPK   R
Sbjct: 467 QSKKPFPKGRSR 478


>gb|KYP41330.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 604

 Score =  201 bits (511), Expect = 3e-57
 Identities = 104/268 (38%), Positives = 162/268 (60%), Gaps = 8/268 (2%)
 Frame = +1

Query: 4   DDNPTCVICKKSNHESKDCFFR----CKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQS 171
           ++ P C ICK++NH  KDC +R    C+ CK   H +K C  +N              ++
Sbjct: 172 NEYPPCGICKRTNHAEKDCRYRGKPQCRHCKKFGHVEKYCRNKNKHQANFAEE-----KN 226

Query: 172 KEEILFYSS--ANCDSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKG 345
            E+ LFY++  +N ++   WYLDSGCSNHM  +  IF D++ ++  ++ +G+     +KG
Sbjct: 227 GEQHLFYATQDSNSETSGSWYLDSGCSNHMAKDASIFKDIDESVKVKVRMGNDIVVESKG 286

Query: 346 KGTIAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV- 522
           KGT+ +++K G +  ITDVL VPNL  NLLS+GQ+++K +++HF+  TC+I D K  ++ 
Sbjct: 287 KGTVMVETKKGTR-LITDVLLVPNLKENLLSIGQMMEKGYTLHFEGDTCKIYDNKKLEIG 345

Query: 523 IASTEMENNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPD 702
               E  N  FP+++    N A+K E  D S LWH R+GH N+  L LL +K M+  LP 
Sbjct: 346 RVKMEKRNRSFPISLRQGPNIAMKAE-VDDSWLWHRRFGHFNTHALKLLYQKNMMRDLPC 404

Query: 703 IQKINQVCEGCIYGKMHKLPFPK-NSWR 783
           +++ ++ CEGC+ GK H+LPF    +WR
Sbjct: 405 LKENSEACEGCLLGKQHRLPFSTGKAWR 432


>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  204 bits (519), Expect = 2e-56
 Identities = 109/252 (43%), Positives = 147/252 (58%), Gaps = 1/252 (0%)
 Frame = +1

Query: 31  KKSNHESKDCFFRCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSANCD 210
           K  N  +  C++    CK   H Q +CW +               Q K   + Y+     
Sbjct: 247 KNRNKSNIQCYY----CKRFGHVQXECWKKERQEKQANYVEQEEDQVKL-FMXYNEEVVS 301

Query: 211 SKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNKKF 390
           S N+W+LDSGCSNHMTG + +F +L+ +   ++ LGD  Q   +GKG +A+ +  GN K 
Sbjct: 302 SNNIWFLDSGCSNHMTGIKSLFKELDESHKLKVKLGDDKQVXVEGKGIMAVNNGHGNVKL 361

Query: 391 ITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDVIASTEM-ENNIFPLTM 567
           + +V ++P+L+ NLLSVGQL+   +S+ FD  TC I DKK + +I +  M  N +FPL +
Sbjct: 362 LYNVYFIPSLTQNLLSVGQLMVSGYSILFDGATCVIKDKKSDQIIVNVRMAANKLFPLEV 421

Query: 568 PLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCEGCIYGK 747
              E  AL V+    SNLWHLRYGHLN KGL LL +K+MV GLP I  +N VCEGCIYGK
Sbjct: 422 SSIEKHALVVKETSESNLWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVN-VCEGCIYGK 480

Query: 748 MHKLPFPKNSWR 783
             K PFPK   R
Sbjct: 481 QSKKPFPKGRSR 492


>gb|KYP33156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 570

 Score =  197 bits (500), Expect = 7e-56
 Identities = 101/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%)
 Frame = +1

Query: 4   DDNPTCVICKKSNHESKDCFF----RCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQS 171
           ++ P C ICK++NH  +DC +    +C+ C    H +K C  +N              ++
Sbjct: 104 NEYPPCGICKRTNHAEQDCRYHGKPQCRHCNKVGHVEKYCRNKNKHQANFAEE-----KN 158

Query: 172 KEEILFYSS--ANCDSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKG 345
            E+ LFY++  +N ++   WYLDSGC+NHM  +  IF D++ ++  ++ +G+     +KG
Sbjct: 159 GEQHLFYATQDSNSETSGNWYLDSGCNNHMAKDASIFKDIDESVKVKVRMGNDIVVESKG 218

Query: 346 KGTIAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV- 522
           KGT+ +++K G +  ITDVL VPNL  NLLS+GQ+++K +++HF+  TC+I D K  ++ 
Sbjct: 219 KGTVMVETKKGTR-LITDVLLVPNLKENLLSIGQMMEKGYTLHFEGDTCKIYDNKKLEIG 277

Query: 523 IASTEMENNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPD 702
               E  N  FP+++    N A+K E  D S LWH R+GH N+  L LL +K M+  LP 
Sbjct: 278 RVKMEKRNRSFPISLRQGPNIAMKAE-VDDSWLWHRRFGHFNTHALKLLYQKNMMRDLPC 336

Query: 703 IQKINQVCEGCIYGKMHKLPFPK-NSWRA 786
           +++ ++ CEGC+ GK H+LPF    +WRA
Sbjct: 337 LKENSEACEGCLLGKQHRLPFSTGKAWRA 365


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  199 bits (505), Expect = 1e-54
 Identities = 104/242 (42%), Positives = 146/242 (60%), Gaps = 2/242 (0%)
 Frame = +1

Query: 67  RCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSANCDSKNMWYLDSGCS 246
           +C+ CK   H + DCW +               +  +  +  S     +  +W++DSGCS
Sbjct: 259 QCRYCKKFGHKEVDCWTKQKDEQKDANFTQNVEEESKLFMASSQITESANAVWFIDSGCS 318

Query: 247 NHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNKKFITDVLYVPNLSH 426
           NHM+ ++ +F DL+ +  S++ LGD  Q   +GKGT+ I++  GN KF+ DV YVP L+H
Sbjct: 319 NHMSSSKSLFRDLDESQKSEVRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVPTLAH 378

Query: 427 NLLSVGQLIQKDFSVHFDDGTCQILDKKMNDVIASTEM-ENNIFPLTMPLNENCALKVEN 603
           NLLSVGQL+   +SV F D  C I DK+    IA   M +N +FPL +    N AL V+ 
Sbjct: 379 NLLSVGQLMTSGYSVVFYDNACDIKDKESGRTIARVPMTQNKMFPLDISNVGNSALVVKE 438

Query: 604 ADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCEGCIYGKMHKLPFP-KNSW 780
            + +NLWHLRYGHLN   L LL +K MVIGLP+I++++ +CEGCIYGK  +  FP   SW
Sbjct: 439 KNETNLWHLRYGHLNVNWLKLLVQKDMVIGLPNIKELD-LCEGCIYGKQTRKSFPVGKSW 497

Query: 781 RA 786
           RA
Sbjct: 498 RA 499


>gb|KYP65916.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 464

 Score =  191 bits (484), Expect = 2e-54
 Identities = 100/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%)
 Frame = +1

Query: 4   DDNPTCVICKKSNHESKDCFF----RCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQS 171
           ++ P C ICK++N   KDC +    +C+ C    H +K C  +N              ++
Sbjct: 110 NEYPPCDICKRTNLAEKDCRYHGKPQCRHCNKVRHVKKYCRNKNKHQANFAEE-----KN 164

Query: 172 KEEILFYSS--ANCDSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKG 345
            E+ LFY++  +N ++   WYLDSGCSNHM  +  IF D++ ++  ++ +G+ T   +KG
Sbjct: 165 GEQHLFYATQDSNSETSGNWYLDSGCSNHMAKDASIFKDIDESVKVKVRMGNDTVVESKG 224

Query: 346 KGTIAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV- 522
           KGT+ +++K G  + ITDV+ VPNL  NLLS+GQ+++K +++HF+  +C+I D K  ++ 
Sbjct: 225 KGTVMVETKKG-MRLITDVILVPNLKENLLSIGQMMEKGYTLHFEGDSCKIYDNKKLEIG 283

Query: 523 IASTEMENNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPD 702
               E  N  FP+++    N A+K E  D S LWH R+GH N+  L+LL +K M+  LP 
Sbjct: 284 RVKMEKRNRSFPISLRQGLNFAMKAE-VDDSWLWHQRFGHFNTHALNLLYKKNMMRDLPC 342

Query: 703 IQKINQVCEGCIYGKMHKLPFPK-NSWRA 786
           +++ ++ CEGC  GK H+LPF    +W A
Sbjct: 343 LKENSEACEGCFLGKQHRLPFSTGKAWSA 371


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  198 bits (503), Expect = 3e-54
 Identities = 104/230 (45%), Positives = 138/230 (60%), Gaps = 1/230 (0%)
 Frame = +1

Query: 97  SQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSANCDSKNMWYLDSGCSNHMTGNRDIF 276
           +Q +CW +               Q K   + Y+     S N+W+LDSGCSNHMTG + +F
Sbjct: 250 AQXECWKKERQEKQANYVEQEEDQVKL-FMAYNEEVVSSNNIWFLDSGCSNHMTGIKSLF 308

Query: 277 VDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQ 456
            +L+ +   ++ LGD  Q   +GKGT A+ +  GN K + +V ++P+L+ NLLSVGQL+ 
Sbjct: 309 KELDESHKLKVKLGDDKQVQVEGKGTXAVNNGHGNVKLLYNVYFIPSLTQNLLSVGQLMV 368

Query: 457 KDFSVHFDDGTCQILDKKMNDVIASTEM-ENNIFPLTMPLNENCALKVENADLSNLWHLR 633
             +S+ FD  TC I DKK + +I    M  N +FPL +   E  AL V+    SNLWHLR
Sbjct: 369 SGYSILFDGATCVIKDKKSDQIIVBVRMAANKLFPLEVSSIEKHALVVKETSESNLWHLR 428

Query: 634 YGHLNSKGLHLLKEKKMVIGLPDIQKINQVCEGCIYGKMHKLPFPKNSWR 783
           YGHLN KGL LL +K+MV GLP I  +N VCEGCIYGK  K PFPK   R
Sbjct: 429 YGHLNVKGLKLLSKKEMVFGLPKIDSVN-VCEGCIYGKQSKKPFPKGRSR 477


>gb|KYP76948.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 422

 Score =  188 bits (478), Expect = 6e-54
 Identities = 102/256 (39%), Positives = 153/256 (59%), Gaps = 8/256 (3%)
 Frame = +1

Query: 43  HESKDCFFR----CKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSA-NC 207
           +  KDC+ R    C  C  P H +K C  +N               ++E+ LFY++  +C
Sbjct: 117 NSQKDCWHRGKPICHYCNKPGHVEKYCRNKNKHQANFAEE-----HNQEQRLFYANQESC 171

Query: 208 DSKN-MWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNK 384
           D+ +  WYLDSGCSNHM  ++ IF D++ ++  ++ LG+GT   ++GKGT+ +++K G +
Sbjct: 172 DNGDGSWYLDSGCSNHMAKDQSIFKDIDNSVKVKVRLGNGTMVESQGKGTVVVETKKGTR 231

Query: 385 KFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV-IASTEMENNIFPL 561
             I DVL VPNL  NLLS+GQ+++  +S+HF+   C+I D K  ++     E  N  FPL
Sbjct: 232 -LIKDVLLVPNLKENLLSIGQMMENGYSLHFERDICKIYDSKRVEIGQVKMEKRNRSFPL 290

Query: 562 TMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCEGCIY 741
           +     N A+KVE  D S LWH R+GH N   L LL +K M+  LP++++ N+ CEGC+ 
Sbjct: 291 SFNCGTNLAMKVE-VDDSWLWHRRFGHFNIHALKLLHQKGMMRDLPNLKENNEACEGCLL 349

Query: 742 GKMHKLPF-PKNSWRA 786
           GK H+LPF    +WRA
Sbjct: 350 GKQHRLPFSTSKAWRA 365


>emb|CAN60751.1| hypothetical protein VITISV_044288 [Vitis vinifera]
          Length = 633

 Score =  192 bits (489), Expect = 8e-54
 Identities = 106/257 (41%), Positives = 155/257 (60%), Gaps = 6/257 (2%)
 Frame = +1

Query: 34  KSNHESKDCFFRCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSANC-- 207
           K  H S++C F+       N+ Q  C                  +  +E +FY+  N   
Sbjct: 17  KKAHHSQNCRFK-------NNQQASC---------------AEEKEADENMFYACQNAVE 54

Query: 208 DSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNKK 387
              N+W+LDSG +NHMTGN++IF+D++ NI SQ+ +G G   + KGKGTI IQ+K G  K
Sbjct: 55  QKNNVWFLDSGYTNHMTGNKNIFLDMDTNINSQVKMGHGDLVNVKGKGTIVIQTKVGT-K 113

Query: 388 FITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKM-NDVIASTEME-NNIFPL 561
           +I DVL +P L  NLLSVGQL++  + +HF+D  C I DK+   +++   +ME N  FP+
Sbjct: 114 YIRDVLLIPALEQNLLSVGQLVEHGYKLHFEDNECTIYDKEQRRNLVKKIKMEKNRSFPI 173

Query: 562 TMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPD-IQKINQVCEGCI 738
                EN AL++E+ + + LWH R+GHLN   L +L ++KMV GLP+ I++ N+VC+GC 
Sbjct: 174 VFKYVENVALRMEDVEEAWLWHRRFGHLNFNSLKMLCQRKMVQGLPNIIEEKNEVCDGCA 233

Query: 739 YGKMHKLPFPKN-SWRA 786
            GK H+  FPK  +WRA
Sbjct: 234 LGKHHRQSFPKGVAWRA 250


>gb|KYP43166.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 412

 Score =  185 bits (469), Expect = 1e-52
 Identities = 99/258 (38%), Positives = 152/258 (58%), Gaps = 7/258 (2%)
 Frame = +1

Query: 31  KKSNHESKDCFFR----CKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSS 198
           +++NH  KDC +R    C  CK   H +K C  +N              +  E+ LFY++
Sbjct: 114 QRTNHAEKDCRYRRKPQCPHCKKFGHVEKYCRNKNKHQTNFAEE-----KDGEQYLFYAT 168

Query: 199 --ANCDSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSK 372
             +N ++   WYLDSGCSNHM  + +IF D++ ++  ++ +G+ T   +KGKGT+ +++K
Sbjct: 169 QDSNSETSGSWYLDSGCSNHMAKDANIFKDIDESVKVKVRIGNDTIVESKGKGTVMVETK 228

Query: 373 DGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILD-KKMNDVIASTEMENN 549
            G  + ITDVL VPNL  NLLS+GQ+++K +++HF   TC+I D KK+       E  N 
Sbjct: 229 KGT-RLITDVLLVPNLKENLLSIGQMMEKGYTLHFKGDTCKIYDNKKLEIGRVKMEKRNR 287

Query: 550 IFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCE 729
            FP+++    N A+K E  D S LWH R+GH N   L LL +K M+  LP +++ ++ CE
Sbjct: 288 SFPISLRQGPNIAMKAE-VDDSWLWHRRFGHFNIHALKLLYQKNMMRDLPCLKENSEACE 346

Query: 730 GCIYGKMHKLPFPKNSWR 783
           GC+ GK H+L F  +  R
Sbjct: 347 GCLLGKQHRLQFSTSKAR 364


>gb|KYP58379.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 503

 Score =  187 bits (474), Expect = 1e-52
 Identities = 103/265 (38%), Positives = 155/265 (58%), Gaps = 8/265 (3%)
 Frame = +1

Query: 16  TCVICKKSNHESKDCFFR----CKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEI 183
           +C IC K  H  KDC+ R    C     P H +K C  +N               ++E+ 
Sbjct: 144 SCGICNKPGHAEKDCWHRGKPICHYYNKPGHVEKYCRNKNKHQANFAEK-----HNQEQR 198

Query: 184 LFYSSA-NCDSKN-MWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTI 357
           LFY++  +CD+ +  WYLDSGCSNHM  ++ IF D++ ++  ++ LG+GT   ++GKGT+
Sbjct: 199 LFYANQESCDNGDGSWYLDSGCSNHMAKDQSIFKDIDNSVKVKVRLGNGTMVESQGKGTV 258

Query: 358 AIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV-IAST 534
            +++K G  + I D+L VPNL  NLLS+GQ+++  +S+HF+   C+I D K  ++     
Sbjct: 259 MVETKKGT-RLIKDMLLVPNLKENLLSIGQMMENGYSLHFERDICKIYDSKRVEIGQVKM 317

Query: 535 EMENNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKI 714
           E  N  FPL+     N A+KVE  D S LWH R+GH N   L LL +K M+  LP++++ 
Sbjct: 318 EKRNRSFPLSFNHGTNIAMKVE-VDDSWLWHRRFGHFNIHALKLLHQKGMMRDLPNLKEN 376

Query: 715 NQVCEGCIYGKMHKLPF-PKNSWRA 786
            + CEGC+ GK H+L F    +WRA
Sbjct: 377 IEACEGCLLGKQHRLSFSTSKAWRA 401


>gb|KYP52821.1| Copia protein [Cajanus cajan]
          Length = 500

 Score =  186 bits (472), Expect = 2e-52
 Identities = 101/270 (37%), Positives = 156/270 (57%), Gaps = 9/270 (3%)
 Frame = +1

Query: 4    DDNPTCVICKKSNHESKDCFFRCKR-----CKIPNHSQKDCWFQNXXXXXXXXXXXXXXQ 168
            ++ P C ICK++NH  KDC +R  +     C    H +K C  +N              +
Sbjct: 224  NEYPPCGICKRTNHAEKDCRYRGNKATMSPCNKVEHVEKYCRNKNKHQAKFVEE-----K 278

Query: 169  SKEEILFYSS--ANCDSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAK 342
            + E+ LFY++  +N ++   WYL S C NHM  +  IF D++  +  ++ +G+ T   +K
Sbjct: 279  NGEQHLFYATQDSNSETSENWYLHSVCINHMAKDASIFKDIDEPVKVKVRMGNNTVVESK 338

Query: 343  GKGTIAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV 522
            GKGTI +++K G +  I DVL VPNL  NLLS+GQ+++K +++HF+  TC+I D K  ++
Sbjct: 339  GKGTIMVETKKGTR-LIADVLLVPNLKENLLSIGQMMEKGYTLHFEGDTCKIYDNKKLEI 397

Query: 523  -IASTEMENNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLP 699
                 E  N  FP+++    N A K E  D S LWH R+GH N+  L LL +K M+  LP
Sbjct: 398  GRVKMEKRNRSFPISLRQGPNIATKAE-VDDSWLWHRRFGHFNTHALKLLYQKNMMRDLP 456

Query: 700  DIQKINQVCEGCIYGKMHKLPFPK-NSWRA 786
             +++ ++ CEGC+ GK H+LPF    +WRA
Sbjct: 457  CLKENSEACEGCLLGKQHQLPFSTGKAWRA 486


>gb|KYP39385.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 723

 Score =  188 bits (477), Expect = 1e-51
 Identities = 104/268 (38%), Positives = 153/268 (57%), Gaps = 7/268 (2%)
 Frame = +1

Query: 4    DDNPTCVICKKSNHESKDCFFRCKR----CKIPNHSQKDCWFQNXXXXXXXXXXXXXXQS 171
            D   +C IC KS H  KDC+ R K     C  P H +K C  +N              ++
Sbjct: 225  DKYSSCGICNKSGHAQKDCWHRGKPIRHYCNKPGHVEKYCRNKNKHQANFAKE-----RN 279

Query: 172  KEEILFYSSANCDS-KNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGK 348
            +E+ LFY++    S +  WYLDSGCSNHM  ++ IF D++ ++  ++ LG+ T   ++GK
Sbjct: 280  QEKHLFYANQESPSIEESWYLDSGCSNHMANDQSIFKDIDNSVKVKVRLGNDTMVESQGK 339

Query: 349  GTIAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV-I 525
            GT+ +++K G +  I D+L VPNL  NLLS+GQ ++  +S+ F+   C+I D K   V  
Sbjct: 340  GTVMVETKKGTR-LIKDILLVPNLKENLLSIGQKMENRYSLLFERDICKIYDSKRLKVGQ 398

Query: 526  ASTEMENNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDI 705
               E  N  FP++     N A+K+E  D S LWH R+GH N   L LL +K M+  LP +
Sbjct: 399  VKMEKRNKSFPISFKPGTNIAMKIE-VDDSWLWHRRFGHFNIHALKLLHQKGMMRDLPTL 457

Query: 706  QKINQVCEGCIYGKMHKLPF-PKNSWRA 786
            ++ N+ CEGC+ GK H+LPF    +WRA
Sbjct: 458  KENNEACEGCLLGKQHRLPFSTSKAWRA 485


>gb|KYP64149.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 339

 Score =  180 bits (456), Expect = 1e-51
 Identities = 97/241 (40%), Positives = 143/241 (59%), Gaps = 3/241 (1%)
 Frame = +1

Query: 70  CKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSA-NCDSKN-MWYLDSGC 243
           C  C  P H +K C  +N               ++E+ LFY++  +CD+ +  WYLDSGC
Sbjct: 1   CHYCNKPGHVEKYCHNKNKHQANFAEE-----HNQEQRLFYANQESCDNGDGSWYLDSGC 55

Query: 244 SNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNKKFITDVLYVPNLS 423
            NHM  ++ IFVD++ ++  ++ LG+GT   ++GKGTI +++K G    I DVL VPNL 
Sbjct: 56  INHMAKDQSIFVDIDNSVKVKVRLGNGTMMESQGKGTIMVETKKGTT-LIKDVLLVPNLK 114

Query: 424 HNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV-IASTEMENNIFPLTMPLNENCALKVE 600
            NLLS+GQ+++  +S+HF+   C+I D K  ++     E  N  FPL+     N A+KVE
Sbjct: 115 ENLLSIGQMMENGYSLHFERDICKIYDSKRVEIGQVKMEKRNRSFPLSFNRGTNIAMKVE 174

Query: 601 NADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCEGCIYGKMHKLPFPKNSW 780
             D S LWH R+GH N   L LL +K M+  LP++++ N+ CEGC  GK H+LPF  +  
Sbjct: 175 -VDDSWLWHRRFGHFNIHALKLLHQKGMMRDLPNLKENNEACEGCFLGKQHQLPFSTSKA 233

Query: 781 R 783
           R
Sbjct: 234 R 234


>ref|XP_007033616.1| Uncharacterized protein TCM_019778 [Theobroma cacao]
           gi|508712645|gb|EOY04542.1| Uncharacterized protein
           TCM_019778 [Theobroma cacao]
          Length = 704

 Score =  187 bits (476), Expect = 1e-51
 Identities = 96/252 (38%), Positives = 143/252 (56%), Gaps = 2/252 (0%)
 Frame = +1

Query: 34  KSNHESKDCFFRCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSANCDS 213
           +SN E ++  F+C  CK P H    CW +               +     + +      S
Sbjct: 211 RSNEERQNKTFQCYYCKKPGHRAAYCWQKQKDENNQASFVEKSDEEIRLFMAFFYEKEQS 270

Query: 214 KNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNKKFI 393
            ++W+LDSGCSNHM+G R +F +L+ +  + + LG+  +   +G+GTI+I++  GN K +
Sbjct: 271 NDVWFLDSGCSNHMSGTRSLFKELDESNKTDVTLGNSKKIRVEGRGTISIKTSQGNAKIL 330

Query: 394 TDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDVIASTEM-ENNIFPLTMP 570
             V+ VP+LSHNLLS+ QL+   +S+ FDDG C I +KK   +I    M +N +FPL + 
Sbjct: 331 QYVMLVPDLSHNLLSIVQLMISGYSILFDDGFCTIKNKKFKQIITKVPMAKNKMFPLEVS 390

Query: 571 LNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCEGCIYGKM 750
           + EN A+       + L HL YGHLN  GL LL +K+MV GLP ++ +   CEGC+YGK 
Sbjct: 391 MIENYAMVANGDSEARLSHLHYGHLNINGLKLLSQKEMVFGLPKLENLG-FCEGCVYGKQ 449

Query: 751 HKLPF-PKNSWR 783
            K PF    +WR
Sbjct: 450 SKKPFLVGKAWR 461


>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108711922|gb|ABF99717.1| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1335

 Score =  189 bits (480), Expect = 3e-51
 Identities = 104/266 (39%), Positives = 159/266 (59%), Gaps = 4/266 (1%)
 Frame = +1

Query: 1    SDDNPTCVICKKSNHESKDCFFR--CKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSK 174
            S  N  C IC+KS+H +  C+ +  C +CK   H  K C                  +S+
Sbjct: 253  SSSNLWCDICQKSSHTTDMCWKKMTCNKCKRKGHIAKYC---RTREINRANFSQEKEKSE 309

Query: 175  EEILFYSSANCDSKNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGT 354
            E +    +A  +  ++W +DSGC+NHM  + ++F +++ +  ++I +G+G+   ++GKGT
Sbjct: 310  EMVFSCHTAQEEKDDVWVIDSGCTNHMAADPNLFREMDSSYHAKIHMGNGSIAQSEGKGT 369

Query: 355  IAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDVIAST 534
            +A+Q+ DG  KFI DVL VP+L  NLLS+GQL++  ++V+F+D +C+ILD+K N ++A  
Sbjct: 370  VAVQTADG-PKFIKDVLLVPDLKQNLLSIGQLLEHGYAVYFEDFSCKILDRKNNRLVAKI 428

Query: 535  EME-NNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQK 711
             ME N  F L M      AL+ E  D+S+LWH R GHLN + L LL+ K MV GLP I  
Sbjct: 429  NMEKNRNFLLRMNHTTQMALRSE-VDISDLWHKRMGHLNYRALKLLRTKGMVQGLPFITL 487

Query: 712  INQVCEGCIYGKMHKLPFP-KNSWRA 786
             +  CEGC++GK  +  FP   +WRA
Sbjct: 488  KSDPCEGCVFGKQIRASFPHSGAWRA 513


>gb|KYP34496.1| Transposon Ty3-G Gag-Pol polyprotein, partial [Cajanus cajan]
          Length = 1012

 Score =  188 bits (477), Expect = 7e-51
 Identities = 104/268 (38%), Positives = 153/268 (57%), Gaps = 7/268 (2%)
 Frame = +1

Query: 4    DDNPTCVICKKSNHESKDCFFRCKR----CKIPNHSQKDCWFQNXXXXXXXXXXXXXXQS 171
            D   +C IC KS H  KDC+ R K     C  P H +K C  +N              ++
Sbjct: 226  DKYSSCGICNKSGHAQKDCWHRGKPIRHYCNKPGHVEKYCRNKNKHQANFAKE-----RN 280

Query: 172  KEEILFYSSANCDS-KNMWYLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGK 348
            +E+ LFY++    S +  WYLDSGCSNHM  ++ IF D++ ++  ++ LG+ T   ++GK
Sbjct: 281  QEKHLFYANQESPSIEESWYLDSGCSNHMANDQSIFKDIDNSVKVKVRLGNDTMVESQGK 340

Query: 349  GTIAIQSKDGNKKFITDVLYVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV-I 525
            GT+ +++K G +  I D+L VPNL  NLLS+GQ ++  +S+ F+   C+I D K   V  
Sbjct: 341  GTVMVETKKGTR-LIKDILLVPNLKENLLSIGQKMENRYSLLFERDICKIYDSKRLKVGQ 399

Query: 526  ASTEMENNIFPLTMPLNENCALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDI 705
               E  N  FP++     N A+K+E  D S LWH R+GH N   L LL +K M+  LP +
Sbjct: 400  VKMEKRNKSFPISFKPGTNIAMKIE-VDDSWLWHRRFGHFNIHALKLLHQKGMMRDLPTL 458

Query: 706  QKINQVCEGCIYGKMHKLPF-PKNSWRA 786
            ++ N+ CEGC+ GK H+LPF    +WRA
Sbjct: 459  KENNEACEGCLLGKQHRLPFSTSKAWRA 486


>gb|KYP38573.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 1120

 Score =  187 bits (476), Expect = 1e-50
 Identities = 99/249 (39%), Positives = 149/249 (59%), Gaps = 4/249 (1%)
 Frame = +1

Query: 52  KDCFFRCKRCKIPNHSQKDCWFQNXXXXXXXXXXXXXXQSKEEILFYSSAN-CDSKN-MW 225
           KD +  C  C  P H++KDCW +                ++E+ LFY++   CD+ +  W
Sbjct: 185 KDKYPLCGICNKPGHAEKDCWHR---------ANFVEEHNQEQRLFYANQEFCDNGDGSW 235

Query: 226 YLDSGCSNHMTGNRDIFVDLNPNITSQIILGDGTQRSAKGKGTIAIQSKDGNKKFITDVL 405
           YLDSGCSNHM  +++IF D++ ++  ++ LG+GT   ++GKGT+ +++K G  + I DVL
Sbjct: 236 YLDSGCSNHMAKDQNIFKDIDNSVKVKVRLGNGTMVESQGKGTVVVETKKGT-RLIKDVL 294

Query: 406 YVPNLSHNLLSVGQLIQKDFSVHFDDGTCQILDKKMNDV-IASTEMENNIFPLTMPLNEN 582
            VPNL  NLLS+GQ+++  +S+HF+   C+I D K  ++     E  N IFPL+     N
Sbjct: 295 LVPNLKENLLSIGQMMENGYSLHFERDICKIYDSKRVEIGQVKMEKRNRIFPLSFNRGTN 354

Query: 583 CALKVENADLSNLWHLRYGHLNSKGLHLLKEKKMVIGLPDIQKINQVCEGCIYGKMHKLP 762
            A+ VE  D S LWH R+GH N   L LL +K M+  LP +++ N+ CEGC+ GK H+  
Sbjct: 355 IAMNVE-VDDSWLWHRRFGHFNIHALKLLHQKGMMRDLPSLKENNEACEGCLLGKQHRSS 413

Query: 763 F-PKNSWRA 786
           F    +WRA
Sbjct: 414 FSTSKAWRA 422