BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00026971
         (1669 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011070829.1| PREDICTED: mediator of RNA polymerase II tra...   734   0.0  
ref|XP_011077190.1| PREDICTED: mediator of RNA polymerase II tra...   706   0.0  
gb|ALT31537.1| mediator of RNA polymerase II transcription subun...   687   0.0  
ref|XP_012846171.1| PREDICTED: mediator of RNA polymerase II tra...   696   0.0  
gb|EYU29950.1| hypothetical protein MIMGU_mgv1a001668mg [Erythra...   696   0.0  
ref|XP_012846170.1| PREDICTED: mediator of RNA polymerase II tra...   696   0.0  
emb|CDP00585.1| unnamed protein product [Coffea canephora]            638   0.0  
ref|XP_002278845.1| PREDICTED: mediator of RNA polymerase II tra...   617   0.0  
ref|XP_009771929.1| PREDICTED: mediator of RNA polymerase II tra...   607   0.0  
ref|XP_008243186.1| PREDICTED: LOW QUALITY PROTEIN: mediator of ...   605   0.0  
ref|XP_015895700.1| PREDICTED: mediator of RNA polymerase II tra...   600   0.0  
emb|CBI27055.3| unnamed protein product [Vitis vinifera]              597   0.0  
ref|XP_012478636.1| PREDICTED: mediator of RNA polymerase II tra...   590   0.0  
gb|KHG24986.1| Mediator of RNA polymerase II transcription subun...   589   0.0  
ref|XP_007046291.1| Phytochrome and flowering time regulatory pr...   588   0.0  
ref|XP_012478635.1| PREDICTED: mediator of RNA polymerase II tra...   586   0.0  
ref|XP_007046292.1| Phytochrome and flowering time regulatory pr...   584   0.0  
gb|KJB80075.1| hypothetical protein B456_013G080300 [Gossypium r...   578   0.0  
ref|XP_012082045.1| PREDICTED: mediator of RNA polymerase II tra...   579   0.0  
ref|XP_004252687.1| PREDICTED: mediator of RNA polymerase II tra...   580   0.0  

>ref|XP_011070829.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            25-like [Sesamum indicum]
          Length = 788

 Score =  734 bits (1896), Expect = 0.0
 Identities = 411/612 (67%), Positives = 439/612 (71%), Gaps = 57/612 (9%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            AIGPFW+TIVSDYLDKIIRCF GNEP GQK S T VELSLVMFN+HGSYSACLVQRSGWT
Sbjct: 15   AIGPFWQTIVSDYLDKIIRCFFGNEPTGQKSSMTPVELSLVMFNAHGSYSACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQNQNVEGERHCILVAASN 1308
            +DMDIFFQWL AIPFAGGGFNDAAIAEGLAEAL MFSS +GNQNQ VEG+RHCILVAASN
Sbjct: 75   RDMDIFFQWLQAIPFAGGGFNDAAIAEGLAEALMMFSSTSGNQNQIVEGQRHCILVAASN 134

Query: 1307 PYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKLR 1128
            PYPLPTPVYRPQ P NPEK+DS+ETQPDN LSDAETLAKSFAQ AISLSVICPKQLPKLR
Sbjct: 135  PYPLPTPVYRPQ-PQNPEKSDSMETQPDNCLSDAETLAKSFAQFAISLSVICPKQLPKLR 193

Query: 1127 GIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVT 948
            GIYNAGKR+PRAA+PPVDNVKNPHFLVLISE F+EA SSLSRSG+TSLPSNQNPVK DV 
Sbjct: 194  GIYNAGKRNPRAAEPPVDNVKNPHFLVLISENFVEARSSLSRSGMTSLPSNQNPVKTDVA 253

Query: 947  XXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVTGPAFPHISSVPRA 768
                           AN SVLVRQ ISVGNI P TVK EP  L S+T PAFP I+SVPRA
Sbjct: 254  PVLPISGLPSASAPSANASVLVRQQISVGNIAPATVKVEPITLTSMTAPAFPQIASVPRA 313

Query: 767  ASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVAQA 588
            ASQAVPSLQTSSP+STSQDMI NN NVPD+KP+V N+ PSLRPV GA ANVRILNDVAQA
Sbjct: 314  ASQAVPSLQTSSPISTSQDMIPNNANVPDVKPSVTNMAPSLRPV-GAPANVRILNDVAQA 372

Query: 587  RQALSGGTS-IGLPS--KTPILSNMISSGMTTSVSAAQTXXXXXXXXXXXXXXSLP---- 429
            RQAL+GGTS IGLPS   TP+LSNMISSG+TTS+  AQT              SLP    
Sbjct: 373  RQALAGGTSTIGLPSIGGTPMLSNMISSGITTSIPPAQTVISSGPSGVTSIAGSLPVSAT 432

Query: 428  --------------------------MSQPITNLQGSVGLVQT----------------- 378
                                      MSQP + LQGSV L QT                 
Sbjct: 433  GQVVHNSTPASLISTASNVSGNASLTMSQPSSTLQGSVSLSQTLPGMSQGNHPVTQIVQT 492

Query: 377  -------QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVNSNHSVSNMPXXXXXXX 219
                    M+ +              +               +NSN+S +NMP       
Sbjct: 493  GMNMNQNMMSGSGASGMPSGTGTMIPTLGTSQQGQPGMQPVGLNSNNSGTNMPLNQQTSS 552

Query: 218  XXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQD 39
                  SKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWP IMQIVRLISQD
Sbjct: 553  TVQSAQSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPIMQIVRLISQD 612

Query: 38   HMNNKQYVGKAD 3
            HMNNK YVGKAD
Sbjct: 613  HMNNKHYVGKAD 624


>ref|XP_011077190.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            25-like [Sesamum indicum]
          Length = 806

 Score =  706 bits (1821), Expect = 0.0
 Identities = 394/612 (64%), Positives = 438/612 (71%), Gaps = 57/612 (9%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GPFW+TIVSDYLDKIIRCFCGNE  GQKPST+ VELSLVMFN+HGSY ACLVQRSGWT
Sbjct: 15   AVGPFWQTIVSDYLDKIIRCFCGNESTGQKPSTSQVELSLVMFNAHGSYCACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQNQNVEGERHCILVAASN 1308
            +DMDIFFQWLSAIPFAGGGFNDAAIAEGLAEAL MFSSPNG+Q QN++G+RHCILVAASN
Sbjct: 75   RDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALMMFSSPNGSQIQNMDGQRHCILVAASN 134

Query: 1307 PYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKLR 1128
            PYPLPTPVYRPQ P N E++D+IE+QPDNRLSDAE LAKSFAQ  ISLS+ICPK+LPKLR
Sbjct: 135  PYPLPTPVYRPQ-PQNLEQSDNIESQPDNRLSDAEALAKSFAQFGISLSIICPKKLPKLR 193

Query: 1127 GIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVT 948
             IYNAGKR+ RAADPPVDNVKNPHFLVLISE F+E  ++LSR G+ +LPSNQNP+K+DVT
Sbjct: 194  AIYNAGKRNARAADPPVDNVKNPHFLVLISENFMEGLAALSRPGMANLPSNQNPIKMDVT 253

Query: 947  XXXXXXXXXXXXXXXANGSVLVRQPISVG-NIHPGTVKPEPTALASVTGPAFPHISSVPR 771
                           ANGSVL RQPI VG NI P TVK EP  + S TGPAFP ISSV R
Sbjct: 254  PAPPISGPPPASGASANGSVLGRQPIPVGKNIPPATVKVEPITVTSGTGPAFPPISSVSR 313

Query: 770  AASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVAQ 591
            A SQ VPSLQTSSP+STSQ+M+++NENV DMKP V ++TPSLRPV GA ANVRILNDVAQ
Sbjct: 314  ATSQPVPSLQTSSPISTSQEMVSSNENVHDMKPQVTSMTPSLRPV-GAPANVRILNDVAQ 372

Query: 590  ARQALSGGTSIGLPSK--TPILSNMISSGMTTSVSAAQTXXXXXXXXXXXXXXSLP---- 429
            ARQAL+GGTSIGLPS   TP+LSNMISSGM +SV  AQT              SLP    
Sbjct: 373  ARQALAGGTSIGLPSMGGTPMLSNMISSGMASSVPPAQTVISSGSSGVASIAGSLPIPAS 432

Query: 428  --------------------------MSQPITNLQ--GSVG---------------LVQT 378
                                      MSQ ++NLQ  GS+G               +VQT
Sbjct: 433  GQVAQNSSSASFTSTAPTVTGTSSLGMSQSLSNLQVSGSLGQSLPGMSQGNLPVTQMVQT 492

Query: 377  -------QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVNSNHSVSNMPXXXXXXX 219
                    M+ T              +               VNSN+SV+NMP       
Sbjct: 493  GMSMNQNMMSGTGTTGMPSGSGNMMPTPGMSQQIPPGMQPVGVNSNNSVTNMPLNQQTSS 552

Query: 218  XXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQD 39
                  SKY+KVWEGNLSGQRQGQPVFITRLEGYR+ASASETLAANWP  MQIVRLISQD
Sbjct: 553  TIQPAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRNASASETLAANWPPTMQIVRLISQD 612

Query: 38   HMNNKQYVGKAD 3
            HMNNKQYVGKAD
Sbjct: 613  HMNNKQYVGKAD 624


>gb|ALT31537.1| mediator of RNA polymerase II transcription subunit 25-like protein,
            partial [Rehmannia glutinosa]
          Length = 440

 Score =  687 bits (1772), Expect = 0.0
 Identities = 367/440 (83%), Positives = 367/440 (83%)
 Frame = -3

Query: 1481 MDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQNQNVEGERHCILVAASNPY 1302
            MDIFFQWLSAIPFAGGGFNDAAIAEGLAEAL MFSSPNGNQNQNVEGERHCILVAASNPY
Sbjct: 1    MDIFFQWLSAIPFAGGGFNDAAIAEGLAEALMMFSSPNGNQNQNVEGERHCILVAASNPY 60

Query: 1301 PLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKLRGI 1122
            PLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQ AISLSVICPKQLPKLRGI
Sbjct: 61   PLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQFAISLSVICPKQLPKLRGI 120

Query: 1121 YNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVTXX 942
            YNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVT  
Sbjct: 121  YNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVTPV 180

Query: 941  XXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVTGPAFPHISSVPRAAS 762
                         ANGSVLVRQPISVGNIHPGTVKPEPTALASVTGPAFPHISSVPRAAS
Sbjct: 181  PPISGPPPASAPSANGSVLVRQPISVGNIHPGTVKPEPTALASVTGPAFPHISSVPRAAS 240

Query: 761  QAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVAQARQ 582
            QAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVAQARQ
Sbjct: 241  QAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVAQARQ 300

Query: 581  ALSGGTSIGLPSKTPILSNMISSGMTTSVSAAQTXXXXXXXXXXXXXXSLPMSQPITNLQ 402
            ALSGGTSIGLPSKTPILSNMISSGMTTSVSAAQT              SLPMSQPITNLQ
Sbjct: 301  ALSGGTSIGLPSKTPILSNMISSGMTTSVSAAQTVISSGPSGVGPVAGSLPMSQPITNLQ 360

Query: 401  GSVGLVQTQMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVNSNHSVSNMPXXXXXX 222
            GSVGLVQTQMAQT              S               VNSNHSVSNMP      
Sbjct: 361  GSVGLVQTQMAQTGMSMNQNMMSGSGASVMPSQQGQPGMQPVGVNSNHSVSNMPSNQQTS 420

Query: 221  XXXXXXXSKYIKVWEGNLSG 162
                   SKYIKVWEGNLSG
Sbjct: 421  STIQSAQSKYIKVWEGNLSG 440


>ref|XP_012846171.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25
            isoform X2 [Erythranthe guttata]
          Length = 756

 Score =  696 bits (1795), Expect = 0.0
 Identities = 381/593 (64%), Positives = 424/593 (71%), Gaps = 38/593 (6%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            AIGPFW+TIVSDYLDKIIR FCGNEP GQKP+TTH ELSLVMFN+HGSYSACLVQRSGWT
Sbjct: 15   AIGPFWQTIVSDYLDKIIRSFCGNEPTGQKPATTHFELSLVMFNAHGSYSACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQNQNVEGERHCILVAASN 1308
            KDMDIFFQWLSAIPFAGGGFNDAAIAEGL+EAL MFSSP GNQNQNVEG+RHCIL+AASN
Sbjct: 75   KDMDIFFQWLSAIPFAGGGFNDAAIAEGLSEALMMFSSPKGNQNQNVEGQRHCILIAASN 134

Query: 1307 PYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKLR 1128
            PYPLPTPV+RPQ   NPEK D +E+QPDNRLSDAETLAKSFAQCA+SLSVICPKQLPKLR
Sbjct: 135  PYPLPTPVFRPQI-QNPEKNDGVESQPDNRLSDAETLAKSFAQCAVSLSVICPKQLPKLR 193

Query: 1127 GIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVT 948
            GI+NAGKR+PRA DPPVDN KNPHFLVLISE F+EA S LSRSG+TSLP NQ PVK+DVT
Sbjct: 194  GIFNAGKRNPRAPDPPVDNNKNPHFLVLISENFMEARSCLSRSGITSLPPNQIPVKMDVT 253

Query: 947  -XXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALA-SVTGPAFPHISSVP 774
                             NGS+L RQP+   NI P  VK EP  +A S+TGP FPHISS+P
Sbjct: 254  PAPPPISGPPPVSIPAVNGSLLARQPVPAANIPPAIVKLEPPTIAPSMTGPTFPHISSIP 313

Query: 773  RAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVA 594
            RA  Q VP++QTSSP+ST Q++I  NEN+P++KP V +  P +RP GGAAANVRILND+A
Sbjct: 314  RAVPQTVPTMQTSSPISTPQEVIPINENIPEVKPLVASSAPPIRPAGGAAANVRILNDMA 373

Query: 593  QARQALS-------GGTSIGLPSK---TPILSNMISSGMTTSVSAAQTXXXXXXXXXXXX 444
            QARQAL+       GG SIG+PS    T +LSNMISSGM TS S +              
Sbjct: 374  QARQALAAAAAGGGGGASIGIPSMGGGTTMLSNMISSGMMTSSSMSS-----GPSIVTSI 428

Query: 443  XXSLPM-------------------SQPITNLQGSVGLVQT-------QMAQTXXXXXXX 342
               LPM                   SQP++ LQG+VG  QT       QM QT       
Sbjct: 429  SGPLPMSANGQVAQNNSGNSGIAMSSQPLSGLQGNVGPGQTGNIPVVPQMVQT---GMGM 485

Query: 341  XXXXXXXSXXXXXXXXXXXXXXXVNSNHSVSNMPXXXXXXXXXXXXXSKYIKVWEGNLSG 162
                                   +NSN+ V+ +              SKY+KVWEGNLSG
Sbjct: 486  NANMMSGGGGASGMSQQGQPPGGMNSNNVVNTL--NQQTSATMQSAQSKYVKVWEGNLSG 543

Query: 161  QRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQDHMNNKQYVGKAD 3
            QRQGQPVFITRLEGYRSASASETLAANWP  MQIVRLISQDHMNNKQYVGKAD
Sbjct: 544  QRQGQPVFITRLEGYRSASASETLAANWPSTMQIVRLISQDHMNNKQYVGKAD 596


>gb|EYU29950.1| hypothetical protein MIMGU_mgv1a001668mg [Erythranthe guttata]
          Length = 757

 Score =  696 bits (1795), Expect = 0.0
 Identities = 381/593 (64%), Positives = 424/593 (71%), Gaps = 38/593 (6%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            AIGPFW+TIVSDYLDKIIR FCGNEP GQKP+TTH ELSLVMFN+HGSYSACLVQRSGWT
Sbjct: 15   AIGPFWQTIVSDYLDKIIRSFCGNEPTGQKPATTHFELSLVMFNAHGSYSACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQNQNVEGERHCILVAASN 1308
            KDMDIFFQWLSAIPFAGGGFNDAAIAEGL+EAL MFSSP GNQNQNVEG+RHCIL+AASN
Sbjct: 75   KDMDIFFQWLSAIPFAGGGFNDAAIAEGLSEALMMFSSPKGNQNQNVEGQRHCILIAASN 134

Query: 1307 PYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKLR 1128
            PYPLPTPV+RPQ   NPEK D +E+QPDNRLSDAETLAKSFAQCA+SLSVICPKQLPKLR
Sbjct: 135  PYPLPTPVFRPQI-QNPEKNDGVESQPDNRLSDAETLAKSFAQCAVSLSVICPKQLPKLR 193

Query: 1127 GIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVT 948
            GI+NAGKR+PRA DPPVDN KNPHFLVLISE F+EA S LSRSG+TSLP NQ PVK+DVT
Sbjct: 194  GIFNAGKRNPRAPDPPVDNNKNPHFLVLISENFMEARSCLSRSGITSLPPNQIPVKMDVT 253

Query: 947  -XXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALA-SVTGPAFPHISSVP 774
                             NGS+L RQP+   NI P  VK EP  +A S+TGP FPHISS+P
Sbjct: 254  PAPPPISGPPPVSIPAVNGSLLARQPVPAANIPPAIVKLEPPTIAPSMTGPTFPHISSIP 313

Query: 773  RAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVA 594
            RA  Q VP++QTSSP+ST Q++I  NEN+P++KP V +  P +RP GGAAANVRILND+A
Sbjct: 314  RAVPQTVPTMQTSSPISTPQEVIPINENIPEVKPLVASSAPPIRPAGGAAANVRILNDMA 373

Query: 593  QARQALS-------GGTSIGLPSK---TPILSNMISSGMTTSVSAAQTXXXXXXXXXXXX 444
            QARQAL+       GG SIG+PS    T +LSNMISSGM TS S +              
Sbjct: 374  QARQALAAAAAGGGGGASIGIPSMGGGTTMLSNMISSGMMTSSSMSS-----GPSIVTSI 428

Query: 443  XXSLPM-------------------SQPITNLQGSVGLVQT-------QMAQTXXXXXXX 342
               LPM                   SQP++ LQG+VG  QT       QM QT       
Sbjct: 429  SGPLPMSANGQVAQNNSGNSGIAMSSQPLSGLQGNVGPGQTGNIPVVPQMVQT---GMGM 485

Query: 341  XXXXXXXSXXXXXXXXXXXXXXXVNSNHSVSNMPXXXXXXXXXXXXXSKYIKVWEGNLSG 162
                                   +NSN+ V+ +              SKY+KVWEGNLSG
Sbjct: 486  NANMMSGGGGASGMSQQGQPPGGMNSNNVVNTL--NQQTSATMQSAQSKYVKVWEGNLSG 543

Query: 161  QRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQDHMNNKQYVGKAD 3
            QRQGQPVFITRLEGYRSASASETLAANWP  MQIVRLISQDHMNNKQYVGKAD
Sbjct: 544  QRQGQPVFITRLEGYRSASASETLAANWPSTMQIVRLISQDHMNNKQYVGKAD 596


>ref|XP_012846170.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25
            isoform X1 [Erythranthe guttata]
            gi|604318457|gb|EYU29949.1| hypothetical protein
            MIMGU_mgv1a001668mg [Erythranthe guttata]
          Length = 777

 Score =  696 bits (1795), Expect = 0.0
 Identities = 381/593 (64%), Positives = 424/593 (71%), Gaps = 38/593 (6%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            AIGPFW+TIVSDYLDKIIR FCGNEP GQKP+TTH ELSLVMFN+HGSYSACLVQRSGWT
Sbjct: 15   AIGPFWQTIVSDYLDKIIRSFCGNEPTGQKPATTHFELSLVMFNAHGSYSACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQNQNVEGERHCILVAASN 1308
            KDMDIFFQWLSAIPFAGGGFNDAAIAEGL+EAL MFSSP GNQNQNVEG+RHCIL+AASN
Sbjct: 75   KDMDIFFQWLSAIPFAGGGFNDAAIAEGLSEALMMFSSPKGNQNQNVEGQRHCILIAASN 134

Query: 1307 PYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKLR 1128
            PYPLPTPV+RPQ   NPEK D +E+QPDNRLSDAETLAKSFAQCA+SLSVICPKQLPKLR
Sbjct: 135  PYPLPTPVFRPQI-QNPEKNDGVESQPDNRLSDAETLAKSFAQCAVSLSVICPKQLPKLR 193

Query: 1127 GIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVT 948
            GI+NAGKR+PRA DPPVDN KNPHFLVLISE F+EA S LSRSG+TSLP NQ PVK+DVT
Sbjct: 194  GIFNAGKRNPRAPDPPVDNNKNPHFLVLISENFMEARSCLSRSGITSLPPNQIPVKMDVT 253

Query: 947  -XXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALA-SVTGPAFPHISSVP 774
                             NGS+L RQP+   NI P  VK EP  +A S+TGP FPHISS+P
Sbjct: 254  PAPPPISGPPPVSIPAVNGSLLARQPVPAANIPPAIVKLEPPTIAPSMTGPTFPHISSIP 313

Query: 773  RAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVA 594
            RA  Q VP++QTSSP+ST Q++I  NEN+P++KP V +  P +RP GGAAANVRILND+A
Sbjct: 314  RAVPQTVPTMQTSSPISTPQEVIPINENIPEVKPLVASSAPPIRPAGGAAANVRILNDMA 373

Query: 593  QARQALS-------GGTSIGLPSK---TPILSNMISSGMTTSVSAAQTXXXXXXXXXXXX 444
            QARQAL+       GG SIG+PS    T +LSNMISSGM TS S +              
Sbjct: 374  QARQALAAAAAGGGGGASIGIPSMGGGTTMLSNMISSGMMTSSSMSS-----GPSIVTSI 428

Query: 443  XXSLPM-------------------SQPITNLQGSVGLVQT-------QMAQTXXXXXXX 342
               LPM                   SQP++ LQG+VG  QT       QM QT       
Sbjct: 429  SGPLPMSANGQVAQNNSGNSGIAMSSQPLSGLQGNVGPGQTGNIPVVPQMVQT---GMGM 485

Query: 341  XXXXXXXSXXXXXXXXXXXXXXXVNSNHSVSNMPXXXXXXXXXXXXXSKYIKVWEGNLSG 162
                                   +NSN+ V+ +              SKY+KVWEGNLSG
Sbjct: 486  NANMMSGGGGASGMSQQGQPPGGMNSNNVVNTL--NQQTSATMQSAQSKYVKVWEGNLSG 543

Query: 161  QRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQDHMNNKQYVGKAD 3
            QRQGQPVFITRLEGYRSASASETLAANWP  MQIVRLISQDHMNNKQYVGKAD
Sbjct: 544  QRQGQPVFITRLEGYRSASASETLAANWPSTMQIVRLISQDHMNNKQYVGKAD 596


>emb|CDP00585.1| unnamed protein product [Coffea canephora]
          Length = 835

 Score =  638 bits (1646), Expect = 0.0
 Identities = 355/612 (58%), Positives = 411/612 (67%), Gaps = 57/612 (9%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GPFW T++SDYL+K+IR FC N+  GQK S  +V LSLV FNSHG YSACLVQRSGWT
Sbjct: 23   AVGPFWHTVLSDYLEKVIRSFCANDSTGQKLSAANVNLSLVTFNSHGPYSACLVQRSGWT 82

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQ-NQNVEGERHCILVAAS 1311
            +D+D+FF+WLSAIPF GGGFNDAAIAEGLAEAL M SS NGNQ  QN++  +HCILVAAS
Sbjct: 83   RDIDVFFEWLSAIPFGGGGFNDAAIAEGLAEALMMISSKNGNQTQQNLDSHKHCILVAAS 142

Query: 1310 NPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKL 1131
            NPYPLPTPVYRP+   N E++++ E Q D RLSDAET+AKSFAQC ISLSVICPKQLPKL
Sbjct: 143  NPYPLPTPVYRPR--QNVEQSENTEIQSDGRLSDAETVAKSFAQCNISLSVICPKQLPKL 200

Query: 1130 RGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDV 951
            + IYNAGKR+PRA DPPVDN KNPHFLVLISE FIEA  +L RSG+T++ S Q+PVKVD 
Sbjct: 201  KAIYNAGKRNPRAPDPPVDNGKNPHFLVLISENFIEARVALGRSGMTNI-STQSPVKVDA 259

Query: 950  TXXXXXXXXXXXXXXXAN-GSVLVRQPISVGNIHPGTVKPEPTALASVTGPAFPHISSVP 774
                            AN G+V+ RQP SVG I P  VK EPT + S++GP FPH+ SVP
Sbjct: 260  ASVASVSGPPSTSVQSANAGAVVNRQPGSVGTIPPAVVKIEPTTVTSMSGPTFPHVPSVP 319

Query: 773  RAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVA 594
            RA+SQ +P+LQTSSP+S SQDM++ NEN+ +MKP V+++T SLRPVG A ANVRILNDVA
Sbjct: 320  RASSQPIPNLQTSSPISASQDMVSTNENIQEMKPIVSSMTQSLRPVGAAPANVRILNDVA 379

Query: 593  QARQALSGGTSIGLPSK--TPILSNMISSGMTTSVSAAQTXXXXXXXXXXXXXXSLP--- 429
            QARQA  GGTS+GL S   TPILSNMISSGMT+S+ AAQT              S P   
Sbjct: 380  QARQAFGGGTSMGLQSMGGTPILSNMISSGMTSSIPAAQTLISSGQSGVTSVSGSAPVAG 439

Query: 428  ---------------------------MSQPITNLQGSVGLVQ------------TQMAQ 366
                                       MSQP++N QG V + Q            TQM Q
Sbjct: 440  NAQGAQNPAPASFPTTTSNVSGSSNLSMSQPLSNHQGGVSMGQTVPSMSQGNLTGTQMVQ 499

Query: 365  TXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN-----------SNHSVSNMPXXXXXXX 219
            +              S                            +N++ +NMP       
Sbjct: 500  SGMTMNQNMMGGIGASGIPSGTGTMIPTPGMSQQVQPGMQPLGVNNNAGANMPLPQQTSN 559

Query: 218  XXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQD 39
                  SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWP  MQIVRLISQD
Sbjct: 560  TLPSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQD 619

Query: 38   HMNNKQYVGKAD 3
            HMNNKQYVGKAD
Sbjct: 620  HMNNKQYVGKAD 631


>ref|XP_002278845.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25
            [Vitis vinifera]
          Length = 827

 Score =  617 bits (1590), Expect = 0.0
 Identities = 345/621 (55%), Positives = 418/621 (67%), Gaps = 66/621 (10%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W+ +VSDYLDKIIR FCGNE  GQKPS+++ ELSLVMFN+HGSY +CLVQRSGWT
Sbjct: 15   AMGPYWQAVVSDYLDKIIRYFCGNELAGQKPSSSNFELSLVMFNAHGSYCSCLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-SPNGNQ-NQNVEGERHCILVAA 1314
            +D+D+F QWLSA+PFAGGGFNDAAIAEGLAEAL MFS + NG+Q  QNV+G+RHCILVAA
Sbjct: 75   RDVDLFLQWLSALPFAGGGFNDAAIAEGLAEALMMFSVAANGSQTQQNVDGQRHCILVAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            +NPYPLPTPVY+PQ   N E+ +SIE+Q ++RLSDAE +AKSFAQC++SLSVICPKQLPK
Sbjct: 135  NNPYPLPTPVYQPQM-QNMEQNESIESQTESRLSDAEAVAKSFAQCSVSLSVICPKQLPK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            L+ IYNAGKR+PR ADPPVDNVKNPHFLVLIS+ F+EA ++LSR G++++ +NQ+PVK+D
Sbjct: 194  LKSIYNAGKRNPRVADPPVDNVKNPHFLVLISDSFMEARAALSRPGLSNMTANQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVT-GPAFPHISSV 777
            +                 NG ++ R  I+VG +   TVK EP+ + S+T GP FPHI SV
Sbjct: 254  IASVPQVSAAPPASIPSVNG-IMNRPTIAVGAVPTATVKVEPSTVTSITSGPGFPHIPSV 312

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
            PRAASQ VPSLQTSSP STSQ+MI+N +NV D+KP V+ ++ +LRPV  AAANV ILN++
Sbjct: 313  PRAASQGVPSLQTSSPSSTSQEMISNGDNVQDLKPIVSGISQTLRPVVPAAANVSILNNL 372

Query: 596  AQARQ-----ALSGGTSIGL-----PSKTPILSNMISSGMTTSVSAAQT----------- 480
            +QARQ     ALSGGTSIGL      S    +SNMISSGM +SV A QT           
Sbjct: 373  SQARQVMHSAALSGGTSIGLQSMGGTSMAMHMSNMISSGMASSVPATQTVFSSGQSAVSS 432

Query: 479  -------------------XXXXXXXXXXXXXXSLPMSQPITNLQGSVGLVQT------- 378
                                             +L +SQP++NLQG V + QT       
Sbjct: 433  ITGSGTLAGTAQVAQNSALGSFTSATSNMSVNSNLGISQPLSNLQGGVSMGQTVPGMSQG 492

Query: 377  -----QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN-----------SNHSVSN 246
                 QM Q+              S                            +N++ +N
Sbjct: 493  NLPGGQMVQSGIGMNQNMMSGLGPSGISSGTGTMIPTPGMSQQVQPGMPSLGVNNNAAAN 552

Query: 245  MPXXXXXXXXXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIM 66
            MP             SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASE+LAANWP  M
Sbjct: 553  MPLPQQTSGAMQTAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASESLAANWPATM 612

Query: 65   QIVRLISQDHMNNKQYVGKAD 3
            QIVRLISQDHMNNKQYVGKAD
Sbjct: 613  QIVRLISQDHMNNKQYVGKAD 633


>ref|XP_009771929.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            25-like [Nicotiana sylvestris]
          Length = 828

 Score =  607 bits (1566), Expect = 0.0
 Identities = 343/611 (56%), Positives = 405/611 (66%), Gaps = 56/611 (9%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GPFW TIVSDYLDKIIR F G E   QKPS  +VE+SLVMFN+HGSYSACLVQRSGWT
Sbjct: 16   ALGPFWHTIVSDYLDKIIRSFFGAESTSQKPSAANVEVSLVMFNAHGSYSACLVQRSGWT 75

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQNQ-NVEGERHCILVAAS 1311
            +DMDIFFQWLSAIPF+GGGF+DAA+AEGL EAL MFSSPNGNQ+Q N+EG++HC+L++AS
Sbjct: 76   RDMDIFFQWLSAIPFSGGGFSDAAVAEGLGEALMMFSSPNGNQSQQNMEGKKHCLLISAS 135

Query: 1310 NPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKL 1131
            NPYPLPTPVYRPQ     E+ ++ ETQ D+RLSDAET+AK+F QC++SLSVICPKQL KL
Sbjct: 136  NPYPLPTPVYRPQM-QKLEQNENTETQTDSRLSDAETVAKAFPQCSVSLSVICPKQLSKL 194

Query: 1130 RGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDV 951
            R +YNAGKR+PRAADPP+D  KNP+FLVLISE FIEA ++ SRSG+T+L SNQ P+K+DV
Sbjct: 195  RAVYNAGKRNPRAADPPIDTAKNPNFLVLISENFIEARAAFSRSGMTNLTSNQTPIKMDV 254

Query: 950  TXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVTGPAFPHISSVPR 771
                            ANGSV+ RQPIS GNI P TVK EPT + S+ GPAF HI SV R
Sbjct: 255  PSIPPVSVPPSISNSAANGSVMSRQPISAGNIPPATVKIEPTTVTSMNGPAFSHIPSV-R 313

Query: 770  AASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVAQ 591
             A Q VPSLQTSSP+S SQ+M ++NENV +MKP V+ +T SLRPV  AAANVRILNDVAQ
Sbjct: 314  PALQPVPSLQTSSPLSVSQEMASHNENVQEMKPIVSGMTQSLRPVAAAAANVRILNDVAQ 373

Query: 590  ARQALSGGT-----------------SIGLPSKTPILSNMISS---GMTT---SVSAAQT 480
            ARQA++G T                 S G+ S  P    + SS   G+TT   SV  + +
Sbjct: 374  ARQAIAGATSIGLQSMGGTPMLSSMISSGMASSVPSAQTVFSSGQSGVTTVSGSVPLSGS 433

Query: 479  XXXXXXXXXXXXXXSLP---------MSQPITNLQGSV--------GLVQ-----TQMAQ 366
                          + P         +SQP++N QG +        G+ Q     TQM  
Sbjct: 434  GQNTQNSAPASFTSTAPSMSGNPNISISQPLSNNQGGISMAGQTVPGMCQGNLPGTQMMP 493

Query: 365  TXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVNS---------NHSVSNMPXXXXXXXXX 213
            +              +                           N + +NMP         
Sbjct: 494  SGTGMNQNMLTGLGATGMPSGTGTMMPTPGISQQGQPGMQPVGNSTGANMPLSQQQTPAA 553

Query: 212  XXXXS-KYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQDH 36
                  KY+KVWEGNLSGQRQGQPVFITRLEGYRSASASE+LAANWP  MQIVRLISQDH
Sbjct: 554  LPSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASESLAANWPPTMQIVRLISQDH 613

Query: 35   MNNKQYVGKAD 3
            MNNKQYVGKAD
Sbjct: 614  MNNKQYVGKAD 624


>ref|XP_008243186.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
            transcription subunit 25 [Prunus mume]
          Length = 868

 Score =  605 bits (1561), Expect = 0.0
 Identities = 341/609 (55%), Positives = 405/609 (66%), Gaps = 54/609 (8%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W T++SDYLDKIIRCFCGNE  GQKPST+ VELSLV F +HGSY  CLVQRSGWT
Sbjct: 15   AMGPYWSTVISDYLDKIIRCFCGNELNGQKPSTSTVELSLVTFYTHGSYCGCLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSS-PNGNQN-QNVEGERHCILVAA 1314
            +D+D+F QWLSAIPF+GGGF+DAAIAEGL+EAL MF +  NGNQN QNV+ ++HCIL+AA
Sbjct: 75   RDLDLFLQWLSAIPFSGGGFSDAAIAEGLSEALMMFPTVQNGNQNQQNVDCQKHCILIAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            SNP+PLPTPVYRPQ   N E+ +SI+ Q +NRL DAE +AKSF QC++SLSVICPKQLPK
Sbjct: 135  SNPHPLPTPVYRPQL-QNLEQNESIDAQTENRLYDAEAVAKSFPQCSVSLSVICPKQLPK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            LR IYNAGKR+PR ADPP+DN KNP FLVLISE F+EA ++LSR G T+LPSN +PVK+D
Sbjct: 194  LRAIYNAGKRNPRVADPPIDNAKNPQFLVLISENFMEARATLSRPGSTNLPSNPSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALAS-VTGPAFPHISSV 777
            +                 NGSV+ RQP++VGN+ P TVK EP+ ++S V GPAFPHI SV
Sbjct: 254  IAPVASVTGPPPTSMPSVNGSVMNRQPVAVGNVPPATVKVEPSTVSSMVAGPAFPHIPSV 313

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
             R  SQ VPSLQTSSP S SQ+M  NNENVPD+KP V+ VT   RPVG       ILN++
Sbjct: 314  -RPPSQGVPSLQTSSPSSASQEMTTNNENVPDLKPVVSGVTHPSRPVGS------ILNNI 366

Query: 596  AQAR----QALSGGTSIGLPS--KTPI---LSNMISSGMTTSVSAAQT------------ 480
            +QAR     AL+GGTSIGL +  + P+   +SNMISSGM +SV AAQ             
Sbjct: 367  SQARVMNSAALTGGTSIGLQTMGQNPMAMHVSNMISSGMASSVGAAQNVFSSSGSGTLTQ 426

Query: 479  -------XXXXXXXXXXXXXXSLPMSQPITNLQGSVGLVQT------------QMAQTXX 357
                                 +L +SQP++NLQG V + Q+            QM Q+  
Sbjct: 427  VAQNSGLSSFTSANSNVSGNNNLGISQPMSNLQGGVSMGQSVPGMSQGNLSGPQMVQSAI 486

Query: 356  XXXXXXXXXXXXSXXXXXXXXXXXXXXXVN-----------SNHSVSNMPXXXXXXXXXX 210
                        S                            +N S  N+P          
Sbjct: 487  GMNPNMMSALGSSGSSSGTGTMIPTPGRPQQVQAGIQSLXANNSSAPNVPLSQQTSSALQ 546

Query: 209  XXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQDHMN 30
               SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWP  MQIVRLISQDHMN
Sbjct: 547  SAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMN 606

Query: 29   NKQYVGKAD 3
            NKQYVG+AD
Sbjct: 607  NKQYVGRAD 615


>ref|XP_015895700.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25
            [Ziziphus jujuba]
          Length = 821

 Score =  600 bits (1547), Expect = 0.0
 Identities = 338/605 (55%), Positives = 412/605 (68%), Gaps = 50/605 (8%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W+TI+SDYL+KIIRC  GN+ +GQK   + +ELSLV FN+HGSY  CLVQRSGWT
Sbjct: 15   AMGPYWQTILSDYLEKIIRCLGGNDMIGQKSPNSSIELSLVTFNTHGSYCGCLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMF-SSPNGNQNQ-NVEGERHCILVAA 1314
            +D++ F QWLSAIPF+GGGF+DAAIAEGL+EAL MF S+ NGNQ+Q +V+ +RHCILV+A
Sbjct: 75   RDIENFLQWLSAIPFSGGGFSDAAIAEGLSEALMMFPSAQNGNQSQQSVDYQRHCILVSA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            SNP+PL TPV+RPQ   N E++++I+   +NRLSDAET+AKSFA C++SLSVICPKQLPK
Sbjct: 135  SNPHPLSTPVFRPQM-QNLEQSENIDAPTENRLSDAETIAKSFALCSVSLSVICPKQLPK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            LR IYNAGKR+PRAADPPVDNVKNPHFLVLISE F+EA ++LSR GVTSL SNQ+PVK+D
Sbjct: 194  LRAIYNAGKRNPRAADPPVDNVKNPHFLVLISEHFLEARAALSRPGVTSLTSNQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALA-SVTGPAFPHISSV 777
            +                 NG ++ RQPISVGNI P  VK EP+ +   V+GP F H+ SV
Sbjct: 254  IASVPSVTGPPPTSLPSVNGPIMNRQPISVGNIPPAIVKVEPSTVGPMVSGPTFSHLPSV 313

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
             R ASQ VPSLQTSSP S  Q+MI NN+N PD+KP V+ V+  LR V  A ANV ILN++
Sbjct: 314  ARPASQGVPSLQTSSPSSAPQEMITNNDNGPDLKPIVSGVSQPLRSVAPAPANVNILNNL 373

Query: 596  AQARQ-----ALSGGTSIGLP--SKTPI---LSNMISSGMTTSVSAAQT----------- 480
            +QARQ     AL+GGTSIGL    +TP+   +SNMISSGMT+S+ AAQT           
Sbjct: 374  SQARQVMNNAALTGGTSIGLQPMGQTPMAMHVSNMISSGMTSSMPAAQTGTLSQVAQNSG 433

Query: 479  -XXXXXXXXXXXXXXSLPMSQPITNLQGSVGLVQT------------QMAQTXXXXXXXX 339
                           ++ +SQP+ N+QGSV + Q+            QM Q+        
Sbjct: 434  LGPFTSATSNVSANSNIGISQPMNNVQGSVSMGQSVPGMSQTNLSGAQMVQSGIGMNQNM 493

Query: 338  XXXXXXSXXXXXXXXXXXXXXXVN-----------SNHSVSNMP--XXXXXXXXXXXXXS 198
                  +                            +N+S +N+P               S
Sbjct: 494  MNGLGPTVPSSGTGTMIPTPGMSQQVQSGVQSLGVNNNSAANIPLSQQASSAVQPGPAQS 553

Query: 197  KYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQDHMNNKQY 18
            KY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWP IMQIVRLISQDHMNNKQY
Sbjct: 554  KYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPIMQIVRLISQDHMNNKQY 613

Query: 17   VGKAD 3
            VGKAD
Sbjct: 614  VGKAD 618


>emb|CBI27055.3| unnamed protein product [Vitis vinifera]
          Length = 815

 Score =  597 bits (1538), Expect = 0.0
 Identities = 333/610 (54%), Positives = 411/610 (67%), Gaps = 55/610 (9%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W+ +VSDYLDKIIR FCGNE  GQKPS+++ ELSLVMFN+HGSY +CLVQRSGWT
Sbjct: 15   AMGPYWQAVVSDYLDKIIRYFCGNELAGQKPSSSNFELSLVMFNAHGSYCSCLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-SPNGNQNQ-NVEGERHCILVAA 1314
            +D+D+F QWLSA+PFAGGGFNDAAIAEGLAEAL MFS + NG+Q Q NV+G+RHCILVAA
Sbjct: 75   RDVDLFLQWLSALPFAGGGFNDAAIAEGLAEALMMFSVAANGSQTQQNVDGQRHCILVAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            +NPYPLPTPVY+PQ   N E+ +SIE+Q ++RLSDAE +AKSFAQC++SLSVICPKQLPK
Sbjct: 135  NNPYPLPTPVYQPQM-QNMEQNESIESQTESRLSDAEAVAKSFAQCSVSLSVICPKQLPK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            L+ IYNAGKR+PR ADPPVDNVKNPHFLVLIS+ F+EA ++LSR G++++ +NQ+PVK+D
Sbjct: 194  LKSIYNAGKRNPRVADPPVDNVKNPHFLVLISDSFMEARAALSRPGLSNMTANQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVT-GPAFPHISSV 777
            +                 NG ++ R  I+VG +   TVK EP+ + S+T GP FPHI SV
Sbjct: 254  IASVPQVSAAPPASIPSVNG-IMNRPTIAVGAVPTATVKVEPSTVTSITSGPGFPHIPSV 312

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
            PRAASQ VPSLQTSSP STSQ+MI+N +NV D+KP V+ ++ +LRPV  AAANV ILN++
Sbjct: 313  PRAASQGVPSLQTSSPSSTSQEMISNGDNVQDLKPIVSGISQTLRPVVPAAANVSILNNL 372

Query: 596  AQARQ-----ALSGGTSI--------------------GLPSKTPILSNMISSGMT--TS 498
            +QARQ     ALSGGTSI                    G+ S  P    + SSG +  +S
Sbjct: 373  SQARQVMHSAALSGGTSIGLQSMGGTSMAMHMSNMISSGMASSVPATQTVFSSGQSAVSS 432

Query: 497  VSAAQTXXXXXXXXXXXXXXS-------------LPMSQPITN------------LQGSV 393
            ++ + T              S             L +SQP+              +Q  +
Sbjct: 433  ITGSGTLAGTAQVAQNSALGSFTSATSNMSVNSNLGISQPLIPGMSQGNLPGGQMVQSGI 492

Query: 392  GLVQTQMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVNSNHSVSNMPXXXXXXXXX 213
            G+ Q  M+                +               VN+N + +NMP         
Sbjct: 493  GMNQNMMSGLGPSGISSGTGTMIPTPGMSQQVQPGMPSLGVNNN-AAANMPLPQQTSGAM 551

Query: 212  XXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQDHM 33
                SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASE+LAANWP  MQIVRLISQDHM
Sbjct: 552  QTAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASESLAANWPATMQIVRLISQDHM 611

Query: 32   NNKQYVGKAD 3
            NNKQYVGKAD
Sbjct: 612  NNKQYVGKAD 621


>ref|XP_012478636.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25
            isoform X2 [Gossypium raimondii]
            gi|763763083|gb|KJB30337.1| hypothetical protein
            B456_005G138200 [Gossypium raimondii]
          Length = 834

 Score =  590 bits (1522), Expect = 0.0
 Identities = 331/620 (53%), Positives = 415/620 (66%), Gaps = 65/620 (10%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W+ I+SDYL+KIIRCFC NE  GQK +T++VELSLV FN+HGSY ACLVQRSGWT
Sbjct: 15   AMGPYWQIILSDYLEKIIRCFCSNEFAGQKNTTSNVELSLVTFNTHGSYCACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-SPNGNQNQNV-EGERHCILVAA 1314
            KD+DIF QWLSAIPF+GGGFNDAAIAEGL+EAL MF  + NGNQ   + +G+RHCILVAA
Sbjct: 75   KDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAANGNQTHQIADGQRHCILVAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            SNPYPLPTPVYRPQ   N E+++++E+Q ++RLSDAET+AKSF QC++SLSVICPKQL K
Sbjct: 135  SNPYPLPTPVYRPQ-TQNLEQSENMESQTESRLSDAETVAKSFPQCSVSLSVICPKQLSK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            L+ IY+AGKR+PRA+DPPVDNV+NP FLVLISE F+E  ++LSRSGV SL  NQ+PVK+D
Sbjct: 194  LKAIYSAGKRNPRASDPPVDNVRNPQFLVLISENFMEGCAALSRSGVPSLAPNQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVT-GPAFPHISSV 777
            +                 NGS++ RQP+S GN+   TVK EPT + S+  GPAFPHI SV
Sbjct: 254  MASVNAVAGTPPTSVPSVNGSIMSRQPVSAGNVPTATVKVEPTTITSMANGPAFPHIPSV 313

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
            PRA  QAVP LQTSSP++T+++++ +++NV ++KP+V  +T  LRPV  AAANV ILN++
Sbjct: 314  PRAPFQAVPMLQTSSPLTTTEEVMRSSDNVQEIKPSVGGMTQPLRPVPPAAANVNILNNL 373

Query: 596  AQAR----QALSGGTSIGLPS--KTPI---LSNMIS------------------SGMTTS 498
            +QAR     ALSGGTSIGL S  +TP+   +SNMIS                  SGMT+ 
Sbjct: 374  SQARVMNSAALSGGTSIGLQSMGQTPVAMHMSNMISSGMTSSVPLAQTVFSSGQSGMTSL 433

Query: 497  VSA------------AQTXXXXXXXXXXXXXXSLPMSQPITNLQGSVGLVQT-------- 378
              +            +                ++ +SQP+ N+QG+V + Q+        
Sbjct: 434  PGSGAVTGTTQVPPNSNLNSFASATSNVAGNSNIGISQPMCNVQGAVSMGQSVPGSMSQG 493

Query: 377  -----QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN----------SNHSVSNM 243
                 Q+ QT              +                           +N+S ++M
Sbjct: 494  NHSGAQLVQTGVAMSQSMSGLGPSTVSSGTGTLIPAPGMSQQVQSGMQTLGVNNNSAASM 553

Query: 242  PXXXXXXXXXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQ 63
            P             SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLA++WPQ MQ
Sbjct: 554  PLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLASDWPQTMQ 613

Query: 62   IVRLISQDHMNNKQYVGKAD 3
            IVRLISQDHMNNKQYVGKAD
Sbjct: 614  IVRLISQDHMNNKQYVGKAD 633


>gb|KHG24986.1| Mediator of RNA polymerase II transcription subunit 25 [Gossypium
            arboreum]
          Length = 828

 Score =  589 bits (1518), Expect = 0.0
 Identities = 330/620 (53%), Positives = 414/620 (66%), Gaps = 65/620 (10%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W+ I+SDYL+KIIRCFC NE  GQK +T++VELSLV FN+HGSY ACLVQRSGWT
Sbjct: 15   AMGPYWQIILSDYLEKIIRCFCSNEFAGQKNTTSNVELSLVAFNTHGSYCACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-SPNGNQNQNV-EGERHCILVAA 1314
            KD+DIF QWLSAIPF+GGGFNDAAIAEGL+EAL MF  + NGNQ   + +G+RHCILVAA
Sbjct: 75   KDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAANGNQTHQIADGQRHCILVAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            SNPYPLPTPVYRPQ   N E+++++E+Q ++RLSDAET+AKSF QC++SLSVICPKQL K
Sbjct: 135  SNPYPLPTPVYRPQ-TQNLEQSENMESQTESRLSDAETVAKSFPQCSVSLSVICPKQLSK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            L+ IY+AGKR+PRA+DPPVDNV+NP FLVLISE F+E  ++LSRSGV SL  NQ+PVK+D
Sbjct: 194  LKAIYSAGKRNPRASDPPVDNVRNPQFLVLISENFMEGCAALSRSGVPSLAPNQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVT-GPAFPHISSV 777
            +                 NGS++ RQP+SVGN+   TVK EP  + S+  GPAFPHI SV
Sbjct: 254  MASVTSVAGTSPTSVPSVNGSIMSRQPVSVGNVPTATVKVEPATITSMANGPAFPHIPSV 313

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
            PRA  QAVP+LQTSSP++T+++++ +++NV ++KP+V  +T  LRPV  AAANV ILN++
Sbjct: 314  PRAPFQAVPTLQTSSPLTTTEEVMRSSDNVQEIKPSVGGMTQPLRPVPPAAANVNILNNL 373

Query: 596  AQAR----QALSGGTSIGLPS--KTPI---LSNMI---------------SSGMTTSVSA 489
            +QAR     ALSGGTSIGL S  +TP+   +SNMI               SSG +   S 
Sbjct: 374  SQARVMNSAALSGGTSIGLQSMGQTPVAMHMSNMISSGMTSSVPLAQTVFSSGQSAMTSL 433

Query: 488  ---------------AQTXXXXXXXXXXXXXXSLPMSQPITNLQGSVGLVQT-------- 378
                           +                ++ +SQP+ N+QG+V + Q+        
Sbjct: 434  PGSGAVTGTTQVPPNSNLNSFASATSNVAGNSNIGISQPMCNVQGAVSMGQSVPGSMSHG 493

Query: 377  -----QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN----------SNHSVSNM 243
                 Q+ QT              +                           +N+S ++M
Sbjct: 494  NHSGAQLVQTGVAMSQSMSGLGPSTVSSGTGTLIPTPGLSQQVQSGMQTIGVNNNSAASM 553

Query: 242  PXXXXXXXXXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQ 63
            P             SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLA++WPQ MQ
Sbjct: 554  PLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLASDWPQTMQ 613

Query: 62   IVRLISQDHMNNKQYVGKAD 3
            IVRLISQDHMNNKQYVGKAD
Sbjct: 614  IVRLISQDHMNNKQYVGKAD 633


>ref|XP_007046291.1| Phytochrome and flowering time regulatory protein isoform 1
            [Theobroma cacao] gi|508710226|gb|EOY02123.1| Phytochrome
            and flowering time regulatory protein isoform 1
            [Theobroma cacao]
          Length = 871

 Score =  588 bits (1517), Expect = 0.0
 Identities = 331/619 (53%), Positives = 405/619 (65%), Gaps = 64/619 (10%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W+T+VSDYLDKIIRCF  +E  GQK ST++VEL+LV FN+HGSY ACLVQRSGWT
Sbjct: 15   AMGPYWQTVVSDYLDKIIRCFSSSELTGQKTSTSNVELALVTFNTHGSYCACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-SPNGNQNQ-NVEGERHCILVAA 1314
            KD+DIF QWLSAIPF+GGGFNDAAIAEGL+EAL MF  +PNGNQ Q NV+G+RHCILVAA
Sbjct: 75   KDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAPNGNQTQQNVDGQRHCILVAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            SNPYPLPTPVYRPQ   N E+T++IE Q ++RLSDAET+AKSFAQC++SLSVICPKQL K
Sbjct: 135  SNPYPLPTPVYRPQI-QNLEQTENIEAQTESRLSDAETVAKSFAQCSVSLSVICPKQLSK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            L+ IY+AGKR+PRA DPPVDNV+NP FLVLISE F+E  ++LSR GV SL SNQ+PVK+D
Sbjct: 194  LKTIYSAGKRNPRAPDPPVDNVRNPPFLVLISENFMEGRAALSRPGVPSLASNQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASV-TGPAFPHISSV 777
            +                 NGS++ RQP+SVGN+   T+K EPT + S+ TGPAFPHI +V
Sbjct: 254  MASVTSGTGPPPTSVPSVNGSMMSRQPVSVGNVPTATIKVEPTTITSMGTGPAFPHIPAV 313

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
            PRA S A+P++QTSSP +TSQ+++ + +NV ++KP+V+ +T  LRPV   AANV ILN++
Sbjct: 314  PRAPSPAIPTMQTSSPSTTSQEVMNSGDNVQELKPSVSGMTQPLRPVP-PAANVNILNNL 372

Query: 596  AQAR----QALSGGTSI--------------------GLPSKTPILSNMISSGMTTSVSA 489
            +QAR     AL+GGTSI                    G+ S  P    + SSG +   S 
Sbjct: 373  SQARVMNSAALTGGTSIGLPSMGQTPVAMHMSNMISSGMASSVPPAQTVFSSGQSCMTSL 432

Query: 488  AQTXXXXXXXXXXXXXXS---------------LPMSQPITNLQGSVGLVQT-------- 378
              +                              + MSQP+ N+Q  V + Q+        
Sbjct: 433  TGSGALTGTVQVPPNSGLSSFASATSNVTANSNIGMSQPMGNVQSGVSMGQSVPGMSQGN 492

Query: 377  ----QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN----------SNHSVSNMP 240
                QM Q+              +                           SN S ++MP
Sbjct: 493  HSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMFPIPGMSQQVQSGMQTLGVSNSSAASMP 552

Query: 239  XXXXXXXXXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQI 60
                         SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WPQ MQI
Sbjct: 553  LSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQI 612

Query: 59   VRLISQDHMNNKQYVGKAD 3
            VRLISQDHMNNKQYVGKAD
Sbjct: 613  VRLISQDHMNNKQYVGKAD 631


>ref|XP_012478635.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25
            isoform X1 [Gossypium raimondii]
          Length = 840

 Score =  586 bits (1511), Expect = 0.0
 Identities = 330/626 (52%), Positives = 414/626 (66%), Gaps = 71/626 (11%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W+ I+SDYL+KIIRCFC NE  GQK +T++VELSLV FN+HGSY ACLVQRSGWT
Sbjct: 15   AMGPYWQIILSDYLEKIIRCFCSNEFAGQKNTTSNVELSLVTFNTHGSYCACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-------SPNGNQNQNV-EGERH 1332
            KD+DIF QWLSAIPF+GGGFNDAAIAEGL+EAL  F        + NGNQ   + +G+RH
Sbjct: 75   KDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMSFDVAQMFPIAANGNQTHQIADGQRH 134

Query: 1331 CILVAASNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVIC 1152
            CILVAASNPYPLPTPVYRPQ   N E+++++E+Q ++RLSDAET+AKSF QC++SLSVIC
Sbjct: 135  CILVAASNPYPLPTPVYRPQ-TQNLEQSENMESQTESRLSDAETVAKSFPQCSVSLSVIC 193

Query: 1151 PKQLPKLRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQ 972
            PKQL KL+ IY+AGKR+PRA+DPPVDNV+NP FLVLISE F+E  ++LSRSGV SL  NQ
Sbjct: 194  PKQLSKLKAIYSAGKRNPRASDPPVDNVRNPQFLVLISENFMEGCAALSRSGVPSLAPNQ 253

Query: 971  NPVKVDVTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVT-GPAF 795
            +PVK+D+                 NGS++ RQP+S GN+   TVK EPT + S+  GPAF
Sbjct: 254  SPVKMDMASVNAVAGTPPTSVPSVNGSIMSRQPVSAGNVPTATVKVEPTTITSMANGPAF 313

Query: 794  PHISSVPRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANV 615
            PHI SVPRA  QAVP LQTSSP++T+++++ +++NV ++KP+V  +T  LRPV  AAANV
Sbjct: 314  PHIPSVPRAPFQAVPMLQTSSPLTTTEEVMRSSDNVQEIKPSVGGMTQPLRPVPPAAANV 373

Query: 614  RILNDVAQAR----QALSGGTSIGLPS--KTPI---LSNMIS------------------ 516
             ILN+++QAR     ALSGGTSIGL S  +TP+   +SNMIS                  
Sbjct: 374  NILNNLSQARVMNSAALSGGTSIGLQSMGQTPVAMHMSNMISSGMTSSVPLAQTVFSSGQ 433

Query: 515  SGMTTSVSA------------AQTXXXXXXXXXXXXXXSLPMSQPITNLQGSVGLVQT-- 378
            SGMT+   +            +                ++ +SQP+ N+QG+V + Q+  
Sbjct: 434  SGMTSLPGSGAVTGTTQVPPNSNLNSFASATSNVAGNSNIGISQPMCNVQGAVSMGQSVP 493

Query: 377  -----------QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN----------SN 261
                       Q+ QT              +                           +N
Sbjct: 494  GSMSQGNHSGAQLVQTGVAMSQSMSGLGPSTVSSGTGTLIPAPGMSQQVQSGMQTLGVNN 553

Query: 260  HSVSNMPXXXXXXXXXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAN 81
            +S ++MP             SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLA++
Sbjct: 554  NSAASMPLSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLASD 613

Query: 80   WPQIMQIVRLISQDHMNNKQYVGKAD 3
            WPQ MQIVRLISQDHMNNKQYVGKAD
Sbjct: 614  WPQTMQIVRLISQDHMNNKQYVGKAD 639


>ref|XP_007046292.1| Phytochrome and flowering time regulatory protein isoform 2
            [Theobroma cacao] gi|508710227|gb|EOY02124.1| Phytochrome
            and flowering time regulatory protein isoform 2
            [Theobroma cacao]
          Length = 860

 Score =  584 bits (1506), Expect = 0.0
 Identities = 331/619 (53%), Positives = 405/619 (65%), Gaps = 64/619 (10%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W+T+VSDYLDKIIRCF  +E  GQK ST++VEL+LV FN+HGSY ACLVQRSGWT
Sbjct: 15   AMGPYWQTVVSDYLDKIIRCFSSSELTGQKTSTSNVELALVTFNTHGSYCACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-SPNGNQNQ-NVEGERHCILVAA 1314
            KD+DIF QWLSAIPF+GGGFNDAAIAEGL+EAL MF  +PNGNQ Q NV+G+RHCILVAA
Sbjct: 75   KDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIAPNGNQTQQNVDGQRHCILVAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            SNPYPLPTPVYRPQ   N E+T++IE Q ++RLSDAET+AKSFAQC++SLSVICPKQL K
Sbjct: 135  SNPYPLPTPVYRPQI-QNLEQTENIEAQTESRLSDAETVAKSFAQCSVSLSVICPKQLSK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            L+ IY+AGKR+PRA DPPVDNV+NP FLVLISE F+E  ++LSR GV SL SNQ+PVK+D
Sbjct: 194  LKTIYSAGKRNPRAPDPPVDNVRNPPFLVLISENFMEGRAALSRPGVPSLASNQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASV-TGPAFPHISSV 777
            +                 NGS++ RQP+SVGN+   T+K EPT + S+ TGPAFPHI +V
Sbjct: 254  MASVTSV-----------NGSMMSRQPVSVGNVPTATIKVEPTTITSMGTGPAFPHIPAV 302

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
            PRA S A+P++QTSSP +TSQ+++ + +NV ++KP+V+ +T  LRPV   AANV ILN++
Sbjct: 303  PRAPSPAIPTMQTSSPSTTSQEVMNSGDNVQELKPSVSGMTQPLRPVP-PAANVNILNNL 361

Query: 596  AQAR----QALSGGTSI--------------------GLPSKTPILSNMISSGMTTSVSA 489
            +QAR     AL+GGTSI                    G+ S  P    + SSG +   S 
Sbjct: 362  SQARVMNSAALTGGTSIGLPSMGQTPVAMHMSNMISSGMASSVPPAQTVFSSGQSCMTSL 421

Query: 488  AQTXXXXXXXXXXXXXXS---------------LPMSQPITNLQGSVGLVQT-------- 378
              +                              + MSQP+ N+Q  V + Q+        
Sbjct: 422  TGSGALTGTVQVPPNSGLSSFASATSNVTANSNIGMSQPMGNVQSGVSMGQSVPGMSQGN 481

Query: 377  ----QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN----------SNHSVSNMP 240
                QM Q+              +                           SN S ++MP
Sbjct: 482  HSGAQMVQSGVGMSQNMSGLGPSTVSSGTGTMFPIPGMSQQVQSGMQTLGVSNSSAASMP 541

Query: 239  XXXXXXXXXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQI 60
                         SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WPQ MQI
Sbjct: 542  LSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQI 601

Query: 59   VRLISQDHMNNKQYVGKAD 3
            VRLISQDHMNNKQYVGKAD
Sbjct: 602  VRLISQDHMNNKQYVGKAD 620


>gb|KJB80075.1| hypothetical protein B456_013G080300 [Gossypium raimondii]
          Length = 683

 Score =  578 bits (1489), Expect = 0.0
 Identities = 331/619 (53%), Positives = 405/619 (65%), Gaps = 64/619 (10%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GP+W  +VSDYLDKIIRCFC +E  GQK ST++VE SLV FN+HGSY ACLVQRSGWT
Sbjct: 15   AMGPYWHIVVSDYLDKIIRCFCSSELTGQKNSTSNVEFSLVTFNTHGSYCACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-SPNGNQN-QNVEGERHCILVAA 1314
            KD+DIF QWLSAIPF+GGGFNDAAIAEGL+EAL MF  + NGNQ  QNV+G+RHCILVAA
Sbjct: 75   KDVDIFLQWLSAIPFSGGGFNDAAIAEGLSEALMMFPIASNGNQTPQNVDGQRHCILVAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            SNPYPLPTPVYRPQ   N E+ ++ E Q ++ LSDAET+A+SFAQC++SLSVICPKQL K
Sbjct: 135  SNPYPLPTPVYRPQI-QNLEQVENSEAQTESCLSDAETVARSFAQCSVSLSVICPKQLAK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            L+ IY+AGKR+PRAADPPVDNVKN  FLVLISE F+E  ++LSRSGV SL +NQ+PVK+D
Sbjct: 194  LKAIYSAGKRNPRAADPPVDNVKNSQFLVLISENFMEGRAALSRSGVPSLATNQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASV-TGPAFPHISSV 777
            +                 NGS++ + P+SVGN+   TVK EPT + S+ TGPAF H+ SV
Sbjct: 254  MASVTSVMGPSPSSV---NGSMVGKLPVSVGNVATATVKVEPTTITSMATGPAFSHVPSV 310

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
            PR  SQA+P+LQTSSP++ +Q+ + + +N+ ++KP+V+ +T   RPV  AAANV ILN++
Sbjct: 311  PRVPSQAIPTLQTSSPLTNTQEGMTSGDNMQELKPSVSGMTQPSRPVPPAAANVNILNNL 370

Query: 596  AQAR----QALSGGTSIGLPS--KTPI---LSNMI---------------SSGMTTSVSA 489
            +QAR     AL+GGTSIGL S  +TP+   +SNMI               SSG  T  S 
Sbjct: 371  SQARVMSSAALTGGTSIGLQSMGQTPVAMHMSNMISSGMASSVPPAHTVLSSGQPTMTSL 430

Query: 488  AQTXXXXXXXXXXXXXXS---------------LPMSQPITNLQGSVGLVQ--------- 381
              +                              + +SQP  N+QG+V + Q         
Sbjct: 431  TGSGALTGTAQVPPNSGLSTFSSASSNVAGNSNIGISQPTGNVQGAVNIGQSVPGMSQGN 490

Query: 380  ---TQMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN----------SNHSVSNMP 240
               TQM Q+              +                           SN S ++MP
Sbjct: 491  HSGTQMMQSGVGMSQNMSALGQSTVSSGNGTMIPTPGMSQQVQSGMQTLGVSNSSAASMP 550

Query: 239  XXXXXXXXXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIMQI 60
                         SKY+KVWEGNLSGQRQGQPVFITRLEGYRSASASETLAA+WPQ MQI
Sbjct: 551  LSQQTSSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAAHWPQTMQI 610

Query: 59   VRLISQDHMNNKQYVGKAD 3
            VRLISQDHMNNKQYVGKAD
Sbjct: 611  VRLISQDHMNNKQYVGKAD 629


>ref|XP_012082045.1| PREDICTED: mediator of RNA polymerase II transcription subunit 25
            isoform X2 [Jatropha curcas]
          Length = 720

 Score =  579 bits (1492), Expect = 0.0
 Identities = 334/621 (53%), Positives = 410/621 (66%), Gaps = 66/621 (10%)
 Frame = -3

Query: 1667 AIGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWT 1488
            A+GPFW++I+SDYL+KIIR F G++  GQKP+T+ VELSLV F +HGSYSACLVQRSGWT
Sbjct: 15   AMGPFWQSILSDYLEKIIRSFVGSDLTGQKPATSTVELSLVTFYAHGSYSACLVQRSGWT 74

Query: 1487 KDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFS-SPNGNQ-NQNVEGERHCILVAA 1314
            +D+DIF QWLS IPFAGGGFNDAAIAEGL+EAL MF  +PN +Q  QN + +RHC+LVAA
Sbjct: 75   RDIDIFLQWLSCIPFAGGGFNDAAIAEGLSEALMMFPFAPNASQAQQNTDAQRHCVLVAA 134

Query: 1313 SNPYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPK 1134
            SNP+ LPTPVYRPQ   N E++++I+ Q ++RLSDAET+AKSF QC++SLSVICPKQL K
Sbjct: 135  SNPHSLPTPVYRPQI-QNLEQSENIDLQTESRLSDAETVAKSFPQCSVSLSVICPKQLLK 193

Query: 1133 LRGIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVD 954
            LR IYNAGKR+ R ADP VDNVKNPHFLVLISE F+EA ++L+R GV++L +NQ+PVK+D
Sbjct: 194  LRAIYNAGKRNTRVADPTVDNVKNPHFLVLISENFMEARTALTRPGVSNLSANQSPVKMD 253

Query: 953  VTXXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVT-GPAFPHISSV 777
            V+                NGS++ R PISVGN+   TVK EPT + S+  GP F HI S 
Sbjct: 254  VSSVPSVAGPPPPSISSVNGSIMNRPPISVGNVPTATVKIEPTTVTSMAPGPVFSHIPSA 313

Query: 776  PRAASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDV 597
             R A+QAVPSLQTSSP +TSQ+M+ N ENVP++KP V+ +  S+RPV   AANV ILN++
Sbjct: 314  -RPATQAVPSLQTSSPPTTSQEMMTNGENVPELKPTVSGMPQSVRPVPPGAANVSILNNL 372

Query: 596  AQARQ-----ALSGGTSIGLPS--KTPI---LSNMISSGMT-----------------TS 498
            +QARQ     AL+GG+SI LPS  +TP+   +SNMISSGM                  TS
Sbjct: 373  SQARQVMNSAALTGGSSIALPSMNQTPVAMHMSNMISSGMATSVPAAQTVFSSGQPGITS 432

Query: 497  VSAAQTXXXXXXXXXXXXXXS-------------LPMSQPITNLQGSVGLVQT------- 378
            ++ + T              S             L +SQP+ NLQG V + Q+       
Sbjct: 433  MTGSGTLTGTSQIAPNSGLGSFASSTSNISGNSNLGISQPMANLQGGVSMGQSVSGMSQG 492

Query: 377  -----QMAQTXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXVN-----------SNHSVSN 246
                 QM Q+              S                            +N+S +N
Sbjct: 493  NLSGGQMVQSVIGMNQNVMNGLGPSGVSSGTSTMIPTPGMPQQAQTGMQSLGVNNNSAAN 552

Query: 245  MPXXXXXXXXXXXXXSKYIKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPQIM 66
            MP             SKY+KVWEGNLSGQRQGQPVFITRLEGYR+ASASE+LAANWP  M
Sbjct: 553  MPLSQQTTSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRNASASESLAANWPPTM 612

Query: 65   QIVRLISQDHMNNKQYVGKAD 3
            QIVRLISQDHMNNKQYVGKAD
Sbjct: 613  QIVRLISQDHMNNKQYVGKAD 633


>ref|XP_004252687.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            25-like [Solanum lycopersicum]
          Length = 805

 Score =  580 bits (1496), Expect = 0.0
 Identities = 328/591 (55%), Positives = 384/591 (64%), Gaps = 37/591 (6%)
 Frame = -3

Query: 1664 IGPFWKTIVSDYLDKIIRCFCGNEPMGQKPSTTHVELSLVMFNSHGSYSACLVQRSGWTK 1485
            +GP+WK IVSDYLDKIIRCF G +   QK S   VE+S+VMFN+HG YSACLVQRSGWTK
Sbjct: 15   LGPYWKIIVSDYLDKIIRCFFGVDSTSQKSSAADVEVSMVMFNTHGPYSACLVQRSGWTK 74

Query: 1484 DMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALTMFSSPNGNQNQN-VEGERHCILVAASN 1308
            DMD F QWLSAIPF+GGGFNDAA+AEGLAEAL MFS PNGNQ Q  +EG++HCIL++ SN
Sbjct: 75   DMDTFLQWLSAIPFSGGGFNDAAVAEGLAEALVMFSVPNGNQTQQKMEGKKHCILISGSN 134

Query: 1307 PYPLPTPVYRPQFPNNPEKTDSIETQPDNRLSDAETLAKSFAQCAISLSVICPKQLPKLR 1128
            PYPLPTPVYRPQ     E+ ++IE Q D+RL+DAET+AK+F QC+ISLSVICPK+LPKLR
Sbjct: 135  PYPLPTPVYRPQM-QKLEQNENIEAQTDSRLADAETVAKTFPQCSISLSVICPKKLPKLR 193

Query: 1127 GIYNAGKRDPRAADPPVDNVKNPHFLVLISEKFIEAHSSLSRSGVTSLPSNQNPVKVDVT 948
             IY+AGK +PRAADPP+D  KNP+FLVLISE FIEA ++ SRSG+T+L SN +PVK+DV+
Sbjct: 194  AIYDAGKHNPRAADPPIDTAKNPNFLVLISENFIEARAAFSRSGLTNLASNHSPVKMDVS 253

Query: 947  XXXXXXXXXXXXXXXANGSVLVRQPISVGNIHPGTVKPEPTALASVTGPAFPHISSVPRA 768
                           AN SV+ R PIS GNI P TVK EP  +  +TGP F HI SV R 
Sbjct: 254  SVLPVSGTQSISNSAANVSVISRPPISAGNIPPATVKIEPNTVTPMTGPGFSHIPSV-RP 312

Query: 767  ASQAVPSLQTSSPMSTSQDMIANNENVPDMKPAVNNVTPSLRPVGGAAANVRILNDVAQA 588
            A Q VPSLQ SSP+S SQ+M+++ ENV +MKP V+ +T SLRPV  AAANV+ILN VAQA
Sbjct: 313  ALQPVPSLQASSPLSVSQEMVSHTENVQEMKPIVSGMTQSLRPVAAAAANVKILNGVAQA 372

Query: 587  RQALSGGTSI-----------------GLPSKTPILSNMISSG------MTTSVSAAQTX 477
             Q L GGTSI                 G+ S  P    ++SSG      MT +V  A + 
Sbjct: 373  HQVLGGGTSIGLQSMGGTPMLSSMISSGMASSVPASQAVLSSGQSGVTTMTGAVPLAGSA 432

Query: 476  XXXXXXXXXXXXXSLP---------MSQ---PITNLQGSVGLVQTQMAQTXXXXXXXXXX 333
                         + P         MSQ   P T +  S G    Q   T          
Sbjct: 433  QNTQNSAPSSFTSTAPSMSGQTVPAMSQGNIPGTQMMPS-GTGMNQNMLTGLGATGLPSG 491

Query: 332  XXXXSXXXXXXXXXXXXXXXVNSNHSVSNMPXXXXXXXXXXXXXS-KYIKVWEGNLSGQR 156
                                V  N + +NMP               KY+KVWEGNLSGQR
Sbjct: 492  TGTMMPTPGMSQQGQPGMQPVGVNSTSANMPLSQQQTSGALPSAQSKYVKVWEGNLSGQR 551

Query: 155  QGQPVFITRLEGYRSASASETLAANWPQIMQIVRLISQDHMNNKQYVGKAD 3
            QGQPVFITRLEGYRSASASE+LAANWP  MQIVRLISQDHMNNKQYVGKAD
Sbjct: 552  QGQPVFITRLEGYRSASASESLAANWPPTMQIVRLISQDHMNNKQYVGKAD 602