BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00025644
         (6243 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposo...   846   0.0  
ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-r...   598   0.0  
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo...   608   0.0  
gb|KYP42321.1| Copia protein [Cajanus cajan]                          619   0.0  
gb|KYP61299.1| Retrovirus-related Pol polyprotein from transposo...   585   0.0  
gb|AJY78065.1| putative polyprotein [Glycine max]                     580   0.0  
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo...   603   0.0  
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo...   599   0.0  
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo...   585   e-180
gb|ABD32333.1| polyprotein-like, putative [Medicago truncatula]       570   e-179
emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]   604   e-179
gb|KYP61781.1| Retrovirus-related Pol polyprotein from transposo...   591   e-178
gb|KYP56739.1| Retrovirus-related Pol polyprotein from transposo...   562   e-177
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo...   578   e-176
gb|KYP40677.1| Retrovirus-related Pol polyprotein from transposo...   567   e-176
gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposo...   585   e-176
ref|XP_014628734.1| PREDICTED: uncharacterized protein LOC106794...   573   e-174
gb|KOM46937.1| hypothetical protein LR48_Vigan07g064100 [Vigna a...   559   e-174
gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposo...   578   e-174
gb|KYP38774.1| Retrovirus-related Pol polyprotein from transposo...   557   e-174

>gb|KHN01991.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1311

 Score =  846 bits (2185), Expect = 0.0
 Identities = 467/1104 (42%), Positives = 640/1104 (57%), Gaps = 16/1104 (1%)
 Frame = +2

Query: 305  HFVEYAGMSSHSSTQYAMTISGGVGDTDWILDTGASKHMCVNQAIMSNIGPICSKIVVYL 484
            H     G S   S  +  T       + WILD+ A+ H+  + + + +   I + + V L
Sbjct: 242  HETRNKGTSGRKSCTHCGTFQSFT--SPWILDSRATDHVTCSLSNLHSYECI-NPVPVKL 298

Query: 485  PDGSSKLVTHGGQVNLSSKLTLTDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQD 664
            P+G     TH G V+LS  +TL +VL++P+F +NL+S+S+L  S+     F  T C+LQD
Sbjct: 299  PNGHQVHATHSGIVHLSKSITLFNVLYMPAFTFNLISISKLVSSTHCALIFSSTSCMLQD 358

Query: 665  LRTEEIVAMGKVLGNLYIL---QXXXXXXXXXXXXXXXVIPFPLACQSDYSLWHNKLGHA 835
              T   + + +    LY L   Q               +IP          LWH ++GH 
Sbjct: 359  ASTRTKIGIVEEKHGLYHLIPDQVNKVICSTIIHPKCKIIPI--------DLWHFRMGHL 410

Query: 836  SPTVLS----HLPFLHSTCNKADKQILSSCDVCHKSKQTRLSFPLSETHASVIFELIHVD 1003
            S   L     H P L +     DK  +  C+ CH +K  +L F  S +HAS IF L+HVD
Sbjct: 411  STERLQCMKPHYPILRN-----DKTFV--CNTCHYAKHKKLPFSSSTSHASHIFYLLHVD 463

Query: 1004 IWGPYAAVSLLNAPYMLTIVDDFSRATWIFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTI 1183
            IWGP +  S+    Y LTIVDD SR TW+ L+H K++   ++  F   V+TQ+   +K I
Sbjct: 464  IWGPCSKPSMHGHKYFLTIVDDHSRFTWVHLMHTKAETRDIIVNFIASVETQYNKKIKKI 523

Query: 1184 RSDKGLEFVNKNCATLFHAHGIIHQRTCVYTPQQNGVVERKHRTLLDMGRALMFHSNLPS 1363
            RSD G EF+     + + + GI+HQ TCV TP+QNG+ ERKH+ LL++ RAL+F +NLPS
Sbjct: 524  RSDNGYEFL---MPSFYASKGIMHQTTCVETPEQNGIAERKHQHLLNVTRALLFQANLPS 580

Query: 1364 KFWPFALLTATFIINRLPSSVIQWKTPYELLHKHSPDYSIFKPFGCLAYASNVSPHKSKF 1543
             FW +ALL AT+++N +P+  +   +PYE LH H P+ S  + FGCL YAS +  ++ K 
Sbjct: 581  NFWCYALLHATYLVNCIPTPFLHNVSPYEKLHGHLPEISHLRVFGCLCYASTLKANRKKL 640

Query: 1544 DARALKCVFLGYEQGRKGFKLYDLDHKELLISRDVVFVED---QFP-FHSTLPCSAAXXX 1711
            D RA  C+F+G++   KG+ +Y+L    ++ SR+VVF ED   Q P   S+ P S+    
Sbjct: 641  DPRAHPCIFIGFKASTKGYLVYNLHLHSIITSRNVVFYEDHFSQIPETQSSHPESSTILP 700

Query: 1712 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHKPSWM 1891
                                                                  H P+++
Sbjct: 701  KSFNISPHDPIIEKPPQPVIQETTDHTPLQLTSTDESAFSQRTKHEPRRSTRPKHAPTYL 760

Query: 1892 SDFILNQVTDHFAQAATSQMSLPAGGPYP---ILTYPYTVSPCFDTAYLSFLGNLHHLQE 2062
             D+  + ++ H  + +TS         YP   +L+Y           +  F+ ++    E
Sbjct: 761  QDYH-HSLSSHDTKVSTSSR-------YPLSSVLSYSR-----LSHTHKHFVMSISSTVE 807

Query: 2063 PHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSVER 2242
            P SY +AS    W++AM+ EL AL+ N+TW LT LP  K  IGC+WVYKIK + DGS+ER
Sbjct: 808  PSSYAEASQYDCWIKAMEAELQALQSNNTWKLTLLPPHKTAIGCRWVYKIKHRADGSIER 867

Query: 2243 YKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGYLD 2422
            YKARLVAKGY Q+ G+DYL +FSPVAKL  VR L+A+     WHL Q+D+NNAFLHG LD
Sbjct: 868  YKARLVAKGYTQMEGLDYLYAFSPVAKLTIVRLLLAMVAFNQWHLRQLDVNNAFLHGELD 927

Query: 2423 EDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHCLFV 2602
            E++YM  P G +      VC L+RSLY LKQASRQW  +L G L+  GF +S SDH LF+
Sbjct: 928  EEVYMQVPPGLSVPNSQMVCRLQRSLYELKQASRQWFTKLSGLLISLGFEKSHSDHSLFL 987

Query: 2603 KCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARSPSG 2782
            + T     AL++YVDD++LTG+   ++ D+   L   F IKDLG  KYFLG+E+ARS SG
Sbjct: 988  RFTGSIITALLVYVDDIILTGNSESEIQDVIKLLDQAFKIKDLGNLKYFLGMEIARSSSG 1047

Query: 2783 TYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPY--RDPEQYRRLVGRLLYL 2956
             +L QRKY LDIL D GML C+P  TP     KL +  G P        YRRL+GRL+YL
Sbjct: 1048 IHLCQRKYTLDILSDSGMLGCQPNVTPMDYSTKLQATAGTPLSTEASSSYRRLIGRLIYL 1107

Query: 2957 NFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSDA 3136
              TRPDITY VQQLSQ+++NP   H +AA  +LRYLKG    G+F  A     L A+SD+
Sbjct: 1108 TNTRPDITYAVQQLSQYMSNPTSVHQQAAYRILRYLKGTSGSGIFLSATGTPQLRAFSDS 1167

Query: 3137 DWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYIA 3316
            DWA C D+R+S TGF I+LG + +SW++KKQ TVSRSS+EAEYRA+  T CEL+WL+Y+ 
Sbjct: 1168 DWAGCQDSRKSTTGFVIYLGSSPVSWQSKKQSTVSRSSSEAEYRAMATTTCELQWLTYLL 1227

Query: 3317 SDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPSH 3496
             D   +   P  +YCDNQ+A+ I  NPVFHERTKH+EIDCH+VR +  +G +    +PS 
Sbjct: 1228 QDFRHNFTKPATIYCDNQSAIQIATNPVFHERTKHIEIDCHIVRQKVTSGLLKLLPVPSS 1287

Query: 3497 LQLADVFTKALGVGLFGSLVFKLG 3568
            LQLAD+FTKAL   +F +L  KLG
Sbjct: 1288 LQLADIFTKALPPTVFQNLCNKLG 1311


>ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein
            from transposon TNT 1-94 [Gossypium raimondii]
          Length = 683

 Score =  598 bits (1542), Expect = 0.0
 Identities = 297/553 (53%), Positives = 392/553 (70%), Gaps = 7/553 (1%)
 Frame = +2

Query: 1955 LPAGGPYPILTYPYTVSPCFD-----TAYLSFLGNLHHLQEPHSYKQASSDPLWVEAMQQ 2119
            LPA   +P    P+++  C         +L F   +    EP +YKQAS    W EAMQ 
Sbjct: 135  LPAATNHP--GTPHSIFNCISYHNLSPQHLHFTLAISASIEPKTYKQASKFTHWNEAMQA 192

Query: 2120 ELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSVERYKARLVAKGYNQVYGVDYL 2299
            E+ ALE+N+TWT+TTLP GK P GCKWV+++K + DGS ERYKARLVAKGY Q+ GVDY 
Sbjct: 193  EINALEQNNTWTMTTLPPGKTPXGCKWVFRVKHRADGSTERYKARLVAKGYTQI-GVDYF 251

Query: 2300 DSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGYLDEDIYMTPPEGYNQAAVGQV 2479
            D+FSPVAK+ TVR L+ALAT++ WH+ Q+D+NNAFLHG L+ED+YM PP G++  +  +V
Sbjct: 252  DTFSPVAKITTVRLLLALATSRHWHIQQLDVNNAFLHGDLNEDVYMLPPPGFSHDST-KV 310

Query: 2480 CHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHCLFVKCTADSFLALVIYVDDVLL 2659
            C L +S+YGLKQASRQW ++L   L+  G+ QS +DH +F K  ++ F  L+IYVDD++L
Sbjct: 311  CKLHKSIYGLKQASRQWFSKLTTALISLGYIQSTADHSMFTKKHSEDFTVLLIYVDDIIL 370

Query: 2660 TGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARSPSGTYLNQRKYILDILKDVGML 2839
            TG+ S ++  +K +L   F IKDLG+ KYFLGLE+AR+  G +++QRKY L+IL++ G +
Sbjct: 371  TGTSSPEIMKVKQFLDTTFRIKDLGDLKYFLGLEVARTSQGIHISQRKYALEILQESGFI 430

Query: 2840 ECKPASTPFPQG--LKLNSRDGVPYRDPEQYRRLVGRLLYLNFTRPDITYCVQQLSQFVN 3013
            ECKPA TP       KL S DG    D   YR+LVG+LLYL  TR D+T+ VQQLSQF++
Sbjct: 431  ECKPAKTPMATKSVYKLTSTDGELLSDITSYRQLVGKLLYLTSTRLDLTFAVQQLSQFMD 490

Query: 3014 NPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSDADWASCGDTRRSLTGFCIFL 3193
             P   H +AA  VLRYLKGCPS GLFYPA S F L A+SD+DWA C +TRRS+TG+CIF 
Sbjct: 491  KPTTNHLQAAHRVLRYLKGCPSTGLFYPASSSFELKAFSDSDWAGCPETRRSITGYCIFF 550

Query: 3194 GDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYIASDLAVSIPGPIPLYCDNQA 3373
            G+ALISW+ KKQ TVSRSS+EAEYRAL +TVCE++WL Y+  DL V I    P++CDN++
Sbjct: 551  GEALISWRAKKQPTVSRSSSEAEYRALASTVCEVQWLHYLLCDLHVPISHATPVFCDNKS 610

Query: 3374 ALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPSHLQLADVFTKALGVGLFGSL 3553
             + I +NP FHERTKH+EIDCH+VR++ +   +      S  QLAD+FTKAL    F  +
Sbjct: 611  TIQIASNPTFHERTKHIEIDCHIVREKLQKDIVHLLPCTSSAQLADLFTKALAAQPFQDM 670

Query: 3554 VFKLGLRDFLHCP 3592
            + KLG+ + +H P
Sbjct: 671  ISKLGMLN-IHSP 682



 Score = 70.5 bits (171), Expect = 2e-08
 Identities = 31/61 (50%), Positives = 44/61 (72%)
 Frame = +2

Query: 1493 FGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLYDLDHKELLISRDVVFVEDQFP 1672
            FGCL++AS +S H+ KFD RA +CVFLGY+   KG+ L D++ + + +SR+V F E  FP
Sbjct: 5    FGCLSFASTLSAHRKKFDPRAKQCVFLGYKPHVKGYILLDIETRAIFVSRNVTFHETIFP 64

Query: 1673 F 1675
            F
Sbjct: 65   F 65


>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1013

 Score =  608 bits (1568), Expect = 0.0
 Identities = 298/545 (54%), Positives = 388/545 (71%), Gaps = 4/545 (0%)
 Frame = +2

Query: 1982 LTYPYTVSPCFDTAYLSFLGNLHHLQEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLT 2161
            LTY +  SP +    LS   N     EPH+Y QAS    W+ AM+ EL AL+ N TW++ 
Sbjct: 472  LTYDFC-SPSYKQFCLSVSTNF----EPHTYTQASKYDCWIMAMKTELAALDMNQTWSIV 526

Query: 2162 TLPEGKKPIGCKWVYKIKMKPDGSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRF 2341
             LP GK+PIGCKWVYKIK   DGS+ERYKARLVAKGY+Q  G+DYLD++SPVAKL TVR 
Sbjct: 527  DLPSGKRPIGCKWVYKIKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAKLTTVRV 586

Query: 2342 LIALATAKGWHLSQVDINNAFLHGYLDEDIYMTPPEGYNQAAVG----QVCHLKRSLYGL 2509
            L+AL   KGW L Q+D+NNAFLHG L E++YMT P G +  +      +VC L +S+YGL
Sbjct: 587  LLALTAIKGWFLEQLDVNNAFLHGDLHEEVYMTLPPGLSVPSSSNTAPKVCKLHKSIYGL 646

Query: 2510 KQASRQWNAELCGKLLEYGFTQSASDHCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSD 2689
            KQASRQW ++L   L+  G++ S +DH LF+K ++  F AL++YVDD++L G+   ++  
Sbjct: 647  KQASRQWYSKLSSALISMGYSPSTADHSLFIKSSSSHFTALLVYVDDIILAGNDKPEIDF 706

Query: 2690 LKAYLHALFTIKDLGEAKYFLGLELARSPSGTYLNQRKYILDILKDVGMLECKPASTPFP 2869
            +KA LH  F IKDLG  +YFLGLE+ARS  G  LNQRKY L+IL+DVG L  KP+STPF 
Sbjct: 707  IKAQLHKCFKIKDLGNLRYFLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSSTPFN 766

Query: 2870 QGLKLNSRDGVPYRDPEQYRRLVGRLLYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATH 3049
              LKL+S  G PY D   YRRL+GRLLYL  TRPDI+Y VQQLSQFV+ PL  H++AAT 
Sbjct: 767  PSLKLHSDHGSPYNDETAYRRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIHYQAATR 826

Query: 3050 VLRYLKGCPSKGLFYPAHSDFSLVAYSDADWASCGDTRRSLTGFCIFLGDALISWKTKKQ 3229
            +LRYLKG   +GLFY + +   L A++D+DWASC  +R+S+TGFC+FLG +LISW++KKQ
Sbjct: 827  ILRYLKGSHGRGLFYSSSASLKLSAFADSDWASCSISRKSITGFCVFLGSSLISWRSKKQ 886

Query: 3230 HTVSRSSAEAEYRALGATVCELKWLSYIASDLAVSIPGPIPLYCDNQAALHIVANPVFHE 3409
             T+SRSS+EAEYRAL +  CEL+WL Y+ +DL  S+  P  ++CDN++A+++  NP FHE
Sbjct: 887  STISRSSSEAEYRALASLTCELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAHNPTFHE 946

Query: 3410 RTKHLEIDCHLVRDQYKAGFISPRKIPSHLQLADVFTKALGVGLFGSLVFKLGLRDFLHC 3589
            RTKH+EIDCH++R++ ++  +    +PS  QLAD FTK L    F S V KLGL D +H 
Sbjct: 947  RTKHIEIDCHVIREKIQSRLLHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGLYD-VHS 1005

Query: 3590 PT*GG 3604
               GG
Sbjct: 1006 SACGG 1010



 Score =  291 bits (746), Expect = 5e-78
 Identities = 161/388 (41%), Positives = 222/388 (57%), Gaps = 8/388 (2%)
 Frame = +2

Query: 542  LTLTDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYIL 721
            L L DVL VPSF  NL+SVSQL  S       +  +C++    T++++   K    LY++
Sbjct: 1    LILHDVLFVPSFCVNLISVSQLINSHQCHLELHIDHCLILQNSTKKMIGTAKYQHGLYVI 60

Query: 722  QXXXXXXXXXXXXXXXVIPFP----LACQSDYSLWHNKLGHASPT----VLSHLPFLHST 877
                              PF         SD  LWH++LGH S +    + S  P +   
Sbjct: 61   ------IRDSATRSQLTQPFVGNTISKDSSDSVLWHHRLGHLSNSTHRIIASQFPIVSYQ 114

Query: 878  CNKADKQILSSCDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNAPYMLT 1057
             +         CD+CH +KQ RL   +S T ++ + EL+H DIWGPY+  S+    Y LT
Sbjct: 115  HHDVP------CDICHFAKQKRLPHFISNTKSASVIELLHADIWGPYSIPSVFGHKYFLT 168

Query: 1058 IVDDFSRATWIFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFH 1237
            +VDDFSR TWI ++  KS+    L  F   ++TQF T +K +R+D G EF+  +   LF 
Sbjct: 169  LVDDFSRFTWIVMMKSKSETRQHLTNFISYIETQFQTKLKCLRTDNGSEFLMHD---LFL 225

Query: 1238 AHGIIHQRTCVYTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLP 1417
            + GIIHQ +CV TPQQNGVVERKH+ +L+  RAL F ++LP  FW FA+  A  +INR+P
Sbjct: 226  SKGIIHQGSCVETPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAIQHAVHLINRIP 285

Query: 1418 SSVIQWKTPYELLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKG 1597
            S ++  KTPY+ LH+  P     + FGCLAYAS +  H++KF  RA K V LGY++G KG
Sbjct: 286  SPLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRAKKSVLLGYKEGVKG 345

Query: 1598 FKLYDLDHKELLISRDVVFVEDQFPFHS 1681
            + LYDL   E  +SR+V F E  FPFH+
Sbjct: 346  YLLYDLHSHEFFMSRNVFFHEFTFPFHT 373


>gb|KYP42321.1| Copia protein [Cajanus cajan]
          Length = 1456

 Score =  619 bits (1595), Expect = 0.0
 Identities = 303/541 (56%), Positives = 399/541 (73%)
 Frame = +2

Query: 1973 YPILTYPYTVSPCFDTAYLSFLGNLHHLQEPHSYKQASSDPLWVEAMQQELLALEKNDTW 2152
            YP+ ++  T + C   ++ SF  ++    EP S+K+A+S+  W  AM+ EL ALEKN TW
Sbjct: 919  YPLSSF-VTYNNC-SPSHTSFCLSISAQHEPTSFKEANSEECWRRAMEAELQALEKNQTW 976

Query: 2153 TLTTLPEGKKPIGCKWVYKIKMKPDGSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLAT 2332
            +L  LPEGK+P+GCKWVY++K K DGSVERYKARLVAKG+ Q  GVDY ++FSPV KL+T
Sbjct: 977  SLVRLPEGKRPVGCKWVYRVKYKVDGSVERYKARLVAKGFTQTEGVDYFETFSPVVKLST 1036

Query: 2333 VRFLIALATAKGWHLSQVDINNAFLHGYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLK 2512
            VRFL++LA A  W L Q+D++NAFLHG L E++YM PP G+  +    VC L +SLYGLK
Sbjct: 1037 VRFLLSLAAAHNWFLHQLDVDNAFLHGDLFEEVYMKPPPGFKLSHPRLVCKLHKSLYGLK 1096

Query: 2513 QASRQWNAELCGKLLEYGFTQSASDHCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDL 2692
            QASRQWN +L   L+   F QS++DH LF+K +  S  AL++YVDDV+LTG+   ++S +
Sbjct: 1097 QASRQWNQKLTEALISLNFIQSSTDHSLFIKKSHSSITALLVYVDDVVLTGNDMAEISAV 1156

Query: 2693 KAYLHALFTIKDLGEAKYFLGLELARSPSGTYLNQRKYILDILKDVGMLECKPASTPFPQ 2872
            KAYLHA F IKDLG  K+FLGLE+ARS SG  LNQRKY L++L + G+ +CKP STP   
Sbjct: 1157 KAYLHAQFHIKDLGPLKFFLGLEIARSQSGLILNQRKYCLELLSEHGLTDCKPVSTPIDA 1216

Query: 2873 GLKLNSRDGVPYRDPEQYRRLVGRLLYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHV 3052
             +KL + +G+P  DP  +RRL+GRLLYL  TRPDI++ VQQLSQFV++P  TH++AA  +
Sbjct: 1217 SVKLYASEGLPLDDPTIFRRLIGRLLYLTNTRPDISFAVQQLSQFVDSPRATHFQAALRI 1276

Query: 3053 LRYLKGCPSKGLFYPAHSDFSLVAYSDADWASCGDTRRSLTGFCIFLGDALISWKTKKQH 3232
            LRYLK  P+ GLFYP+ ++  + A+SD+DWASC +TRRS+TGFCIF G ALISWK+KKQ 
Sbjct: 1277 LRYLKSSPALGLFYPSQTEHRIQAFSDSDWASCPNTRRSVTGFCIFYGSALISWKSKKQS 1336

Query: 3233 TVSRSSAEAEYRALGATVCELKWLSYIASDLAVSIPGPIPLYCDNQAALHIVANPVFHER 3412
            TVSRSS+EAEYRAL +  CEL+WL ++  DL+++IP P  ++CD+Q+A++I  NP FHER
Sbjct: 1337 TVSRSSSEAEYRALASVTCELQWLLFLCHDLSINIPTPFSIFCDSQSAIYIAKNPTFHER 1396

Query: 3413 TKHLEIDCHLVRDQYKAGFISPRKIPSHLQLADVFTKALGVGLFGSLVFKLGLRDFLHCP 3592
            TKH+E+DCHL R + + G I    +PS  QLADVFTKAL    F   V KL L D ++ P
Sbjct: 1397 TKHIEVDCHLTRLKIQQGLIHLFHVPSKSQLADVFTKALYPRNFTEAVSKLCLID-IYNP 1455

Query: 3593 T 3595
            T
Sbjct: 1456 T 1456



 Score =  337 bits (863), Expect = 1e-90
 Identities = 208/585 (35%), Positives = 304/585 (51%), Gaps = 25/585 (4%)
 Frame = +2

Query: 23   CSHCQEHGHEKSECFRLHGYPDWYKKFKEQRGRSMVHC----VDTNTQLNSKTQAEESGK 190
            C+ C++  H    CF ++GYP  Y+   +    S        VD++T   S T  EES  
Sbjct: 244  CAKCKKTNHTIDSCFEIYGYPAGYRNRDKSNSTSKAFANLTTVDSDTASRSATP-EESSN 302

Query: 191  EFQLTDISNIIKQELAKIMSTQHVAADSPIADTPMHYAHFVEYAGMSSHSSTQYAMTISG 370
            + Q T         L+K      +A      D P H  + V+    +S   T ++ ++  
Sbjct: 303  QTQFT---------LSKEQYHAFLALIQQNKDVP-HSVNHVQQNPKNSSPGTPFSSSL-- 350

Query: 371  GVGDTDWILDTGASKHMCVNQAIMSNIGPICSKIVVYLPDGSSKLVTHGGQVNLSSKLTL 550
                  W+LD+GA+ H+C +Q +  ++ PI   I + LP+ ++ L    G V L   L L
Sbjct: 351  ------WVLDSGATDHICPSQHLFDSLNPI-KPISISLPNHTTVLAKLSGTVRLGD-LVL 402

Query: 551  TDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYILQXX 730
             +  +VP F  +L+S+ +LT S  L   F  T C +    T + + + K    L+ L   
Sbjct: 403  PNTFYVPHFAMHLISIPRLTSSDCL-ILFCDTNCHIVQKSTSKTIGVAKKKQGLFYL-LN 460

Query: 731  XXXXXXXXXXXXXVIPFPLACQS---------------------DYSLWHNKLGHASPTV 847
                         + PF   C S                     D  LWH+KLGH    V
Sbjct: 461  SVEHDLTASTLLDIHPFFNQCFSTINNTVHDTLYKNAINNNTLNDSMLWHSKLGHVPNKV 520

Query: 848  LSHLPFLHSTCNKADKQILSSCDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAV 1027
            +  +   +S       ++   CDVCH SKQ  LSF  S T +S  FELIHVDIWGP    
Sbjct: 521  MQQICSQNSAIPFHKFEV---CDVCHYSKQKNLSFSNSHTTSSRFFELIHVDIWGPLNVS 577

Query: 1028 SLLNAPYMLTIVDDFSRATWIFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEF 1207
            S     Y LT+VDD+SR TW  LL  KS+V ++L  F  L++ QF   +K +RSD G EF
Sbjct: 578  SFQGYKYFLTVVDDYSRFTWTHLLKTKSEVKAILPSFITLIEKQFDVHLKRLRSDNGKEF 637

Query: 1208 VNKNCATLFHAHGIIHQRTCVYTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALL 1387
               +    F   GI+H+ +CV  PQQNG+VERKH+ +L++ RAL+F + LP +FW FA+ 
Sbjct: 638  YLHD---FFQNKGILHETSCVERPQQNGIVERKHQHILNVCRALLFQAKLPKQFWSFAVK 694

Query: 1388 TATFIINRLPSSVIQWKTPYELLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCV 1567
             AT IINRLP+ ++  K+P+E+++   PD +  K FGCLA+A+ +S  ++K D RA KC+
Sbjct: 695  QATHIINRLPTPLLSQKSPFEMIYNCKPDLTELKVFGCLAFATTLSSKRTKLDRRASKCI 754

Query: 1568 FLGYEQGRKGFKLYDLDHKELLISRDVVFVEDQFPFHSTLPCSAA 1702
            FLGY+ G KGF L++L +K  LISRDV+F E  FP+ + +P  +A
Sbjct: 755  FLGYKNGTKGFLLFNLHNKSFLISRDVLFYEKIFPYSAHVPSMSA 799


>gb|KYP61299.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 515

 Score =  585 bits (1509), Expect = 0.0
 Identities = 286/516 (55%), Positives = 362/516 (70%)
 Frame = +2

Query: 2060 EPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSVE 2239
            EP ++ +AS    W++AM +E+ ALE N+TW LTTLP  K  IGC+WVYK K K DGS++
Sbjct: 1    EPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKAKHKADGSID 60

Query: 2240 RYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGYL 2419
            RYKARLVAKGY Q+ G+D+ D+FSPVAKL  VR L++L     WHL Q+D+NN+FLHG L
Sbjct: 61   RYKARLVAKGYTQMEGLDFFDTFSPVAKLTIVRLLLSLVAIHNWHLKQLDVNNSFLHGDL 120

Query: 2420 DEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHCLF 2599
            +E++YM  P G   +  GQVC L+RSLYGLKQASRQW A L   L+++G+  S SDH LF
Sbjct: 121  NEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDHSLF 180

Query: 2600 VKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARSPS 2779
            +KC+  +  A++IYVDD++L G+   ++  L + LH  F IKDLG  KYFLGLE+AR+ +
Sbjct: 181  LKCSPATITAILIYVDDLVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFLGLEVARNHT 240

Query: 2780 GTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLLYLN 2959
            G +L QRKY LD+L D GML  KP STP      L +  G P  D   YRRLVGRL+YL 
Sbjct: 241  GIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLFASSGTPLTDTAAYRRLVGRLIYLT 300

Query: 2960 FTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSDAD 3139
             TRPDITY VQQLSQFV NP   H +A   +LRYLKG P  G+F   +S   L A+SD+D
Sbjct: 301  NTRPDITYAVQQLSQFVTNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFSDSD 360

Query: 3140 WASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYIAS 3319
            WA C DTRRS+TGF ++LGD+LISWK+KKQ TVSRSS+EAEYRAL  T CEL+WLSY+  
Sbjct: 361  WAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSYLLK 420

Query: 3320 DLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPSHL 3499
            D  + +  P  LYCDNQ AL I +NP+FHERTKH+EIDCH+VRD+   G +    + S L
Sbjct: 421  DFHIDLIRPSILYCDNQFALQISSNPIFHERTKHIEIDCHIVRDKVSTGLLKLLPVSSSL 480

Query: 3500 QLADVFTKALGVGLFGSLVFKLGLRDFLHCPT*GGA 3607
            QLAD+ TK L   +F S   KLG+ + +H    GG+
Sbjct: 481  QLADILTKPLSPFVFRSHCSKLGMLN-IHSQLEGGS 515


>gb|AJY78065.1| putative polyprotein [Glycine max]
          Length = 523

 Score =  580 bits (1496), Expect = 0.0
 Identities = 282/521 (54%), Positives = 363/521 (69%)
 Frame = +2

Query: 2042 NLHHLQEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMK 2221
            ++ H  EP SY++AS    WV AM++EL AL KN TW +  LP   KPIGCKWVYK+K K
Sbjct: 2    SITHCTEPQSYEEASKHEHWVTAMKEELNALAKNCTWKIVELPPHTKPIGCKWVYKVKHK 61

Query: 2222 PDGSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNA 2401
             +G +ERYKARLVAKGYNQV G+DY ++FSPVAK+ TVR L+A+A  K WHL Q+D+NNA
Sbjct: 62   ANGQIERYKARLVAKGYNQVEGIDYFETFSPVAKITTVRTLLAVAAIKNWHLHQLDVNNA 121

Query: 2402 FLHGYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSA 2581
            FLHG L ED+YM  P+G   A    VC L++SLYGLKQASR+W  +L   LL+ G+ QS 
Sbjct: 122  FLHGDLQEDVYMKIPDGVTCAKPNSVCKLQKSLYGLKQASRKWYEKLTNLLLKEGYIQSI 181

Query: 2582 SDHCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLE 2761
            SD+ LF     ++F AL++YVDD++L G    +   +K  L   F IK+LG+ KYFLGLE
Sbjct: 182  SDYSLFTLTKGNTFTALLVYVDDIILAGDSIDEFDRIKNVLDLAFKIKNLGKLKYFLGLE 241

Query: 2762 LARSPSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVG 2941
            +A S  G  ++QRKY LD+LKD G+L CKPASTP    +KL+S  G PY D   YRR+VG
Sbjct: 242  VAHSRLGITISQRKYCLDLLKDSGLLGCKPASTPLDTSIKLHSAAGTPYADISGYRRIVG 301

Query: 2942 RLLYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLV 3121
            +LLYLN TRPDI +  QQLSQF+  P + H+ AA  VLRYLK  P +G+F+   S+  L+
Sbjct: 302  KLLYLNTTRPDIAFATQQLSQFMQAPTNVHFNAACRVLRYLKNNPGQGIFFSRTSEMQLI 361

Query: 3122 AYSDADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKW 3301
             YSDADWA C D+R+S++G+C F+G +L+SW+ KKQ TVSRSS+EAEYRAL +  CEL+W
Sbjct: 362  GYSDADWAGCMDSRKSISGYCFFIGKSLVSWRAKKQATVSRSSSEAEYRALSSAACELQW 421

Query: 3302 LSYIASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPR 3481
            L Y+ +DL V +     LYCDNQ+A+HI +NPVFHERTKHLEIDCHLVR++   G +   
Sbjct: 422  LLYLFADLRVQLTRTPTLYCDNQSAVHIASNPVFHERTKHLEIDCHLVREKLLKGTLKLL 481

Query: 3482 KIPSHLQLADVFTKALGVGLFGSLVFKLGLRDFLHCPT*GG 3604
             + +  Q+AD  TKAL    F   V KL + +  H    GG
Sbjct: 482  PVSTSDQVADFLTKALAPPKFHDFVSKLSMINIYHDKLEGG 522


>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1316

 Score =  603 bits (1555), Expect = 0.0
 Identities = 304/579 (52%), Positives = 395/579 (68%), Gaps = 3/579 (0%)
 Frame = +2

Query: 1880 PSWMSDFILNQVTDHFAQAATSQMSLPAGGPYPI---LTYPYTVSPCFDTAYLSFLGNLH 2050
            P+++ DF       H A  +TS      G  +P+   L+Y   +SP F      ++ ++ 
Sbjct: 751  PTYLQDF-------HGAFTSTSTAHSSTGIRHPLHSFLSYDL-LSPSFH----HYVFSIS 798

Query: 2051 HLQEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDG 2230
             + EP ++ +AS    W++AM +E+ ALE N+TW LTTLP  K  IGC+WVYK+K K DG
Sbjct: 799  SVTEPKNFAEASKSDSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVYKVKHKADG 858

Query: 2231 SVERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLH 2410
            S++RYKARLVAKGY Q+ G+D+ D+FSPVAKL TVR L++LA    WHL Q+D+NNAFLH
Sbjct: 859  SIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQLDVNNAFLH 918

Query: 2411 GYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDH 2590
            G L+E++YM  P G   +  GQVC L+RSLYGLKQASRQW A L   L+++G+  S SDH
Sbjct: 919  GDLNEEVYMQLPPGLTPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYVPSPSDH 978

Query: 2591 CLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELAR 2770
             LF+KC+  +  A++IYVDD++L G+   ++  L + LH  F IKDLG  KYFLGLE+AR
Sbjct: 979  SLFLKCSPATTTAILIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKYFLGLEVAR 1038

Query: 2771 SPSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLL 2950
            + +G +L QRKYILD+L D GML  KP STP    + L++  G P  D   YRRLVGRL+
Sbjct: 1039 NHTGIHLCQRKYILDLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAYRRLVGRLI 1098

Query: 2951 YLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYS 3130
            YL  TRPDITY VQQLSQFV+NP   H +A   +LRYLKG P  G+F   +S   L A+S
Sbjct: 1099 YLTNTRPDITYAVQQLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNSSVQLRAFS 1158

Query: 3131 DADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSY 3310
            D+DWA C DTRRS+TGF ++LGD+LISWK+KKQ TVSRSS+EAEYRAL  T CEL+WLSY
Sbjct: 1159 DSDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCELQWLSY 1218

Query: 3311 IASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIP 3490
            +  D  +    P  LYCDNQ+AL I +NPVFHERTKH+EIDCH+VRD+   G +    + 
Sbjct: 1219 LLKDFHIDPISPSILYCDNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTGLLKLLPVS 1278

Query: 3491 SHLQLADVFTKALGVGLFGSLVFKLGLRDFLHCPT*GGA 3607
            S  QLAD+ TK L   +F S   KLG+ + +H    GG+
Sbjct: 1279 SSQQLADILTKPLSPFVFRSHCSKLGMLN-IHSQLEGGS 1316



 Score =  349 bits (896), Expect = 3e-95
 Identities = 204/554 (36%), Positives = 294/554 (53%), Gaps = 4/554 (0%)
 Frame = +2

Query: 23   CSHCQEHGHEKSECFRLHGYPDWYKKFKEQRG----RSMVHCVDTNTQLNSKTQAEESGK 190
            C+HC   GH  + CFR HG+P    +  +       R   HC  T   +      E   +
Sbjct: 170  CTHCNRTGHTDAVCFRKHGFPSTTNRSNKGSSNRPRRICTHCGKTGHTI------EVCYQ 223

Query: 191  EFQLTDISNIIKQELAKIMSTQHVAADSPIADTPMHYAHFVEYAGMSSHSSTQYAMTISG 370
            +      S  +  + A +  T  V  D  + ++             S    T + +  S 
Sbjct: 224  KHGFPPGSKPLSDKTASVNHT--VTGDCKVTESTQSLE--------SQDVRTSFPIVCSA 273

Query: 371  GVGDTDWILDTGASKHMCVNQAIMSNIGPICSKIVVYLPDGSSKLVTHGGQVNLSSKLTL 550
                + WILD+GA+ H+  + +  S+  PI + I V LP G   L TH G V  ++   L
Sbjct: 274  ISTPSSWILDSGATDHVSSSLSHFSSFSPI-NPIDVKLPTGQHVLATHSGTVKFTNSFYL 332

Query: 551  TDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYILQXX 730
             DVL++P+F YNL+S+S+L  S S +  F    C++Q+  T + +    V   LY     
Sbjct: 333  VDVLYIPAFTYNLISISKLVSSLSCQLIFDHHSCIIQETNTMKKIGTVDVNEGLYSFTAS 392

Query: 731  XXXXXXXXXXXXXVIPFPLACQSDYSLWHNKLGHASPTVLSHLPFLHSTCNKADKQILSS 910
                         VI  P        LWH ++GH S   L   PFL    +        S
Sbjct: 393  NIHHPSTNS----VIVHPKCSIQPIDLWHFRMGHLSHERLQSFPFLSVDTS-------FS 441

Query: 911  CDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNAPYMLTIVDDFSRATWI 1090
            C+ CH +KQ +L FPLS ++AS  F+L+H+DIWGP +  S+    Y LTIVDD +R TW+
Sbjct: 442  CNTCHHAKQKKLPFPLSHSYASQPFDLLHMDIWGPCSVTSMHGHKYFLTIVDDHTRFTWL 501

Query: 1091 FLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGIIHQRTCV 1270
            FL+ +KS+    +  F   V+TQF   VK IR+D GLEF   +    F + GIIHQ TCV
Sbjct: 502  FLMQNKSETRQHIINFINQVETQFDKHVKVIRTDNGLEF---SMTQYFSSKGIIHQTTCV 558

Query: 1271 YTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVIQWKTPYE 1450
             TPQQNG+VERKH+ LL++ R+L+F +NLPS FW FAL+ ATF+IN +P+  +   +P+E
Sbjct: 559  ETPQQNGIVERKHQHLLNVTRSLLFQANLPSIFWCFALMHATFLINCIPTPFLHNISPFE 618

Query: 1451 LLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLYDLDHKEL 1630
             L+ H  D SI   FGCL Y+S ++ H++K D RA  C+FLG++   KG+ L++L    L
Sbjct: 619  KLYGHPCDISILCVFGCLCYSSTITSHRTKLDPRAHPCIFLGFKPHTKGYLLFNLHTHGL 678

Query: 1631 LISRDVVFVEDQFP 1672
            L+SR+V+F ED FP
Sbjct: 679  LVSRNVLFHEDHFP 692


>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1376

 Score =  599 bits (1544), Expect = 0.0
 Identities = 299/564 (53%), Positives = 392/564 (69%)
 Frame = +2

Query: 1880 PSWMSDFILNQVTDHFAQAATSQMSLPAGGPYPILTYPYTVSPCFDTAYLSFLGNLHHLQ 2059
            PS++ D+       H +  +TS  +L  G  YPI    Y         + +F+ ++  + 
Sbjct: 810  PSYLQDY-------HHSLTSTST-NLHPGMLYPI--EKYISYSRLSNDFQAFVSSISAVS 859

Query: 2060 EPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSVE 2239
            EPHSY +A+    W++AM  EL AL+ N TWTLT LP  K+ +GC+W+YKIK   DGS+E
Sbjct: 860  EPHSYAEAAKHDCWLKAMHAELEALKMNQTWTLTPLPPHKQAVGCRWIYKIKYNADGSIE 919

Query: 2240 RYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGYL 2419
            RYKARLVAKGY QV G+DYL +FSPVAKL TVR L+ALA    WHL Q+D+NNAFLHG L
Sbjct: 920  RYKARLVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAVFDWHLKQLDVNNAFLHGDL 979

Query: 2420 DEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHCLF 2599
            +E++YMT P G       QVC L++SLYGLKQASRQW A+L   L+ +G+ QSASDH LF
Sbjct: 980  NEEVYMTLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAKLSSFLIHHGYHQSASDHSLF 1039

Query: 2600 VKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARSPS 2779
            +K ++ S  AL+IYVDD++L G++  ++  +   L   F IKDLG  KYFLGLE+AR+ S
Sbjct: 1040 MKFSSSSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKIKDLGNLKYFLGLEVARNKS 1099

Query: 2780 GTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLLYLN 2959
            G +L+QRKY+LDIL D GM+  +P STP     +L++  G P  DP  YRRL+GRL+YL 
Sbjct: 1100 GIHLSQRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGTPLADPSSYRRLLGRLIYLT 1159

Query: 2960 FTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSDAD 3139
             TRPDI+Y V  LSQF++ P   H +A   +LRYLK  P  GLF+P +S   L A+SD+D
Sbjct: 1160 TTRPDISYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPGSGLFFPTNSSLHLKAFSDSD 1219

Query: 3140 WASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYIAS 3319
            WA C DTRRS+TGF ++LGD+LISW++KKQ TVSRSS+EAEYRAL  T  EL+WL+Y+  
Sbjct: 1220 WAGCLDTRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEAEYRALATTTSELQWLTYLLH 1279

Query: 3320 DLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPSHL 3499
            DL V +  P  LYCDNQ+ALHI AN VFHERTKH++IDCHLVR++ ++G +    + S  
Sbjct: 1280 DLHVPVHQPALLYCDNQSALHIAANQVFHERTKHIDIDCHLVREKLQSGLLKLLPVASPH 1339

Query: 3500 QLADVFTKALGVGLFGSLVFKLGL 3571
            QLAD+FTK+L   +F +L  KLG+
Sbjct: 1340 QLADIFTKSLSPSMFTALYSKLGM 1363



 Score =  345 bits (884), Expect = 2e-93
 Identities = 201/551 (36%), Positives = 296/551 (53%), Gaps = 1/551 (0%)
 Frame = +2

Query: 23   CSHCQEHGHEKSECFRLHGYPDWYKKFKEQRGRSMVHCVDTNTQLNSKTQAEESGKEFQL 202
            C+ C  +GH +S C+R HG+PD   K    RG++  HC                GK    
Sbjct: 225  CNFCGRNGHTESTCYRKHGFPDKNGKSSSNRGKACSHC----------------GKNGHT 268

Query: 203  TDISNIIKQELAKIMSTQHVAADSPIADTPMHYAHFVEYAGMSSHSSTQYAMTISGGVGD 382
             D              T +     P    P H   F      S++SS Q  +  +     
Sbjct: 269  VD--------------TCYKKHGFP----PGH--RFSNNKSASANSSVQPHICTTHSFDT 308

Query: 383  TDWILDTGASKHMCVNQAIMSNIGPICSKIVVYLPDGSSKLVTHGGQVNLSSKLTLTDVL 562
            T WI+D+GA+ H+  +    ++   +   ++V LP G     TH G V  SS   LTDVL
Sbjct: 309  TPWIIDSGATDHVTCSLQFFTSY-KLIEPVIVNLPTGHKVTATHSGTVYFSSNFQLTDVL 367

Query: 563  HVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYILQXXXXXX 742
            ++ SF +NL+SVS+L  ++S + TF    C +QD+RT+  +    V G LY L       
Sbjct: 368  YISSFAFNLISVSKLVSTTSYQITFTNNVCFIQDIRTKMKIGSVDVRGGLYQL----IPH 423

Query: 743  XXXXXXXXXVIPFPLACQSDYSLWHNKLGHASPTVLSHLPFLHSTCNKADKQILSSCDVC 922
                      I  P        LWH +LGH S T L ++  L+  C   +K    +C++C
Sbjct: 424  HFKPPFIHSTIIHPKCDVIPIDLWHFRLGHLSNTRLHNMQQLYP-CLTINKDF--TCNIC 480

Query: 923  HKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNA-PYMLTIVDDFSRATWIFLL 1099
            H +KQ +LSF  S + AS  F L+H+DIWGPY+ +S ++   +  TIVDD +  TWIFL+
Sbjct: 481  HYAKQRKLSFSSSHSTASRPFSLLHMDIWGPYSCISSIHGHKFFFTIVDDNTHFTWIFLM 540

Query: 1100 HHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGIIHQRTCVYTP 1279
             +KS+    +  F  L++ QF T ++TI++D G EF+ +N    F++ GI+HQ TC+ TP
Sbjct: 541  INKSETRMHISNFINLIENQFNTRIQTIQTDNGAEFLMQN---FFNSKGIVHQTTCIETP 597

Query: 1280 QQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVIQWKTPYELLH 1459
            QQNGVVERKH+ LL++  AL+FHS LP  FW +ALL AT++INR+ + ++  KTP++ L+
Sbjct: 598  QQNGVVERKHQHLLNVTHALLFHSKLPYCFWSYALLHATYLINRITTPLLDNKTPFQKLY 657

Query: 1460 KHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLYDLDHKELLIS 1639
              + D +  + FGCL Y S  + ++ K D RA  CVFLG+    KG+  YDL  + + IS
Sbjct: 658  GQTCDITELRVFGCLCYVSTSTANRKKLDPRAHPCVFLGFSPTTKGYITYDLHTRAITIS 717

Query: 1640 RDVVFVEDQFP 1672
            R+V F E+ FP
Sbjct: 718  RNVSFYENHFP 728


>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1002

 Score =  585 bits (1508), Expect = e-180
 Identities = 294/577 (50%), Positives = 398/577 (68%), Gaps = 2/577 (0%)
 Frame = +2

Query: 1880 PSWMSDFILNQVTDHFAQAATSQMSLPAGGPYPILTYPYTVSPCFDTAYLSFLGNLHHLQ 2059
            PS++ D+    +T H +      +S P    +  ++Y   +SP    +  +F  ++  ++
Sbjct: 434  PSYLHDYHHTLLTTHNSPT----ISQPLYSIHNHISYS-NLSP----SQKAFSLSISSIK 484

Query: 2060 EPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSVE 2239
            EP+SY +A  D  W  A+Q EL ALEKN+TW LT LP  K+ +GCKWV+K+K   DG++E
Sbjct: 485  EPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFKLKFNSDGTIE 544

Query: 2240 RYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGYL 2419
            R+KARLVAKGY Q   +DYLD+FSPV K+ TVR L+A+ATAK WH+ Q+D+N  FLHG L
Sbjct: 545  RHKARLVAKGYTQTETLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLDVNTTFLHGDL 604

Query: 2420 DEDIYMTPPEGYNQAAVGQ--VCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHC 2593
             E++YMTPP G   +      VC L +SLYGLKQASRQWNA+L   L++ GF QS +D+ 
Sbjct: 605  HEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSGFKQSMADYS 664

Query: 2594 LFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARS 2773
            LF K     F A+++YVDD++L G+   +++ +K+ L   FTIKDLG+ KYFLG+E+ARS
Sbjct: 665  LFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKYFLGMEVARS 724

Query: 2774 PSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLLY 2953
             +G  L QRKY LD+++D G+L  KP  +P    +KL+   G P  DP QYRRL+GRL+Y
Sbjct: 725  STGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQYRRLLGRLIY 784

Query: 2954 LNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSD 3133
            L  TR DI++ V  LSQF++ P   H++AA  +L+Y+K  P KGLF+P+ SD +L  YSD
Sbjct: 785  LTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSD 844

Query: 3134 ADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYI 3313
            +DWASC DTRRS+TGF  FLG ALISWK+KKQ TVS+SSAEAEYRAL  + CE +WLSY+
Sbjct: 845  SDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQSTCEAQWLSYL 904

Query: 3314 ASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPS 3493
              D  +    PI L+CDNQ+ALHI +NPVFHERTK++E+DCH+VR++ + G I    I +
Sbjct: 905  LHDFGLHSFHPIVLFCDNQSALHIASNPVFHERTKNIELDCHIVREKLQVGLIHLLPIST 964

Query: 3494 HLQLADVFTKALGVGLFGSLVFKLGLRDFLHCPT*GG 3604
              QLADVFTKAL +  F  ++FKLG+ D +H    GG
Sbjct: 965  ADQLADVFTKALSLRPFEQIIFKLGMFD-IHSSLRGG 1000



 Score =  301 bits (770), Expect = 4e-81
 Identities = 162/395 (41%), Positives = 226/395 (57%), Gaps = 4/395 (1%)
 Frame = +2

Query: 518  GQVNLSSKLTLTDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGK 697
            G +  S    L DVL++P F +NL+SVS+L +    + TF    C +QD ++ +++   K
Sbjct: 1    GSIFFSEDFFLADVLYIPEFNFNLVSVSRLIRQLGCRLTFSGDLCDIQDSQSMKMIGAAK 60

Query: 698  VLGNLYILQXXXXXXXXXXXXXXXVIPFPLACQSDYSLWHNKLGHASPTVL----SHLPF 865
                LY+L                          D  LWH +LGH +   L    S+ PF
Sbjct: 61   HNMGLYVLDWKPKVCLYLHSVNNFH-------SYDNDLWHIRLGHLAHEKLQAMKSNFPF 113

Query: 866  LHSTCNKADKQILSSCDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNAP 1045
            +    NK        C+VC+ +KQ +L F  S T A  IF+L+HVDIWGP    S+    
Sbjct: 114  IDCKKNK------DPCNVCYLAKQRQLPFSHSVTKADEIFDLLHVDIWGPTTPASIFGHK 167

Query: 1046 YMLTIVDDFSRATWIFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCA 1225
            + LTIVDD SR TW++ + HKS+V   L  F  L++ QFG  VK +RSD G EF+ KN  
Sbjct: 168  FFLTIVDDKSRHTWVYFMKHKSEVADHLSSFITLIENQFGKKVKCVRSDNGPEFLLKN-- 225

Query: 1226 TLFHAHGIIHQRTCVYTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFII 1405
              +H  GI+HQ +CV TPQQNG+VERKH+ ++ + RAL+  SNLP  FW +A+  A F+I
Sbjct: 226  -FYHEKGILHQTSCVETPQQNGIVERKHQHIMTVARALVMQSNLPKSFWFYAVSHAVFLI 284

Query: 1406 NRLPSSVIQWKTPYELLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQ 1585
            NR PSS ++ K PYE+++   PD +  K FGCLAYA+ +  ++ KFD R  +CVFLG++ 
Sbjct: 285  NRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRGRRCVFLGFKP 344

Query: 1586 GRKGFKLYDLDHKELLISRDVVFVEDQFPFHSTLP 1690
              KG  LYDL+ +E  +SR V + E  FPF  T P
Sbjct: 345  QVKGSILYDLNSRETFLSRHVEYFEHIFPFLPTSP 379


>gb|ABD32333.1| polyprotein-like, putative [Medicago truncatula]
          Length = 635

 Score =  570 bits (1468), Expect = e-179
 Identities = 288/575 (50%), Positives = 381/575 (66%)
 Frame = +2

Query: 1880 PSWMSDFILNQVTDHFAQAATSQMSLPAGGPYPILTYPYTVSPCFDTAYLSFLGNLHHLQ 2059
            PS++ D+I N  T+  + A  S +  P       +++ + +S    T  LS + ++    
Sbjct: 47   PSYLQDYICNPSTNSVSSANKSCILYPLSN---FISHKH-LSNSQHTFALSLVSHI---- 98

Query: 2060 EPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSVE 2239
            EP SY +A     W +AMQ EL AL++  TWT+  +P   KPIGCKWV +IK   DGS+E
Sbjct: 99   EPKSYAEAIKSDCWKQAMQLELNALDQTGTWTVVDIPSQVKPIGCKWVCRIKYNDDGSIE 158

Query: 2240 RYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGYL 2419
            RYKARLVAKGYNQ+ G+DY D+FSPVAK+  VR +IALA+   W L Q+D+NNAFLHG L
Sbjct: 159  RYKARLVAKGYNQIEGLDYFDTFSPVAKITIVRLVIALASINHWFLHQLDVNNAFLHGDL 218

Query: 2420 DEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHCLF 2599
             E++Y   P G +     QVC L +SLYGLKQASR+W  +L   L+   + Q+ASD  LF
Sbjct: 219  QENVYKKIPPGLSTFKPNQVCKLSKSLYGLKQASRKWYEKLTTLLISNDYKQAASDASLF 278

Query: 2600 VKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARSPS 2779
             K T+++F  +++YVDD++L G+   +   +K  LH  F IKDLG  KYFLGLE+A S S
Sbjct: 279  TKLTSETFTIILVYVDDIILAGNSLTEFHIIKNALHQAFKIKDLGILKYFLGLEVAHSHS 338

Query: 2780 GTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLLYLN 2959
            G  L QRKY LD+L D G+L  KP STP    +KL++   + + D   YRRL+GRL+YLN
Sbjct: 339  GISLCQRKYCLDLLNDSGLLGSKPVSTPSDPSIKLHNDTSLLFPDISAYRRLIGRLIYLN 398

Query: 2960 FTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSDAD 3139
             TRPDIT+  QQLSQF++ P  TH+ A   VL+YLKG P KG+F+P  S   +  Y+DAD
Sbjct: 399  TTRPDITFITQQLSQFLSKPTQTHYHATLRVLKYLKGSPGKGIFFPRASGLHIQGYTDAD 458

Query: 3140 WASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYIAS 3319
            W  C DTRRS++G C FLG +LI W+TKKQ TVS+SS+EAEYRA+ +  CE++WL Y+  
Sbjct: 459  WVGCKDTRRSISGHCFFLGQSLICWRTKKQPTVSKSSSEAEYRAMASATCEMQWLLYLLR 518

Query: 3320 DLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPSHL 3499
            DL V       LYCDNQ+A+HI +NPVFHERTKHLEIDCH+VR++ +AG      + +H 
Sbjct: 519  DLQVQCVQLPVLYCDNQSAMHIASNPVFHERTKHLEIDCHIVREKLQAGIFKLLPVTTHD 578

Query: 3500 QLADVFTKALGVGLFGSLVFKLGLRDFLHCPT*GG 3604
            Q+ D FTKAL +  F  L+ KLG+ D  H PT GG
Sbjct: 579  QIGDSFTKALYLQPFSLLLSKLGMLDIYHPPTCGG 613


>emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
          Length = 1813

 Score =  604 bits (1557), Expect = e-179
 Identities = 294/563 (52%), Positives = 388/563 (68%)
 Frame = +2

Query: 1880 PSWMSDFILNQVTDHFAQAATSQMSLPAGGPYPILTYPYTVSPCFDTAYLSFLGNLHHLQ 2059
            P+W  D++++   +H    +++Q S   G  YP+ ++       F   + +FL  L    
Sbjct: 1165 PAWHHDYVMSAQLNH----SSTQSSSRQGTRYPLSSHLSFFR--FSPHHRAFLALLTAQT 1218

Query: 2060 EPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSVE 2239
            EP S++QA  DP W +AM  EL ALE+N+TW +  LP G KPIGC+WVYKIK   DG++E
Sbjct: 1219 EPSSFEQADCDPRWRQAMSTELQALERNNTWEMVPLPPGHKPIGCRWVYKIKYHSDGTIE 1278

Query: 2240 RYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGYL 2419
            RYKARLVAKGY QV G+DY ++FSP AKL T+R L+ +A ++ W++ Q+D++NAFLHG L
Sbjct: 1279 RYKARLVAKGYTQVAGIDYQETFSPTAKLTTLRCLLTVAASRNWYIHQLDVHNAFLHGNL 1338

Query: 2420 DEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHCLF 2599
             E++YMTPP G  +     VC L++S+YGLKQASR W +     +   G+ QS +D+ LF
Sbjct: 1339 QEEVYMTPPPGLRRQGENLVCRLRKSIYGLKQASRNWFSTFTATVKSAGYIQSKADYSLF 1398

Query: 2600 VKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARSPS 2779
             K   + F A++IYVDD+LLTG+   ++  LK +L   F IKDLGE KYFLG+E +RS  
Sbjct: 1399 TKSQGNKFTAILIYVDDILLTGNDLHEIKMLKTHLLKRFFIKDLGELKYFLGIEFSRSKK 1458

Query: 2780 GTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLLYLN 2959
            G +++QRKY LDIL+D G+   KP   P  Q LKL + DG    DP +YRRLVGRL+YL 
Sbjct: 1459 GIFMSQRKYTLDILQDTGLTGVKPEKFPMEQNLKLTNEDGELLHDPSRYRRLVGRLIYLT 1518

Query: 2960 FTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSDAD 3139
             TRPDI Y V+ LSQF+N P   HWEAA  VLRY+KG P +GLF P+ ++ +L A+ D+D
Sbjct: 1519 VTRPDIVYSVRTLSQFMNTPRKPHWEAALRVLRYIKGSPGQGLFLPSENNLTLSAFCDSD 1578

Query: 3140 WASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYIAS 3319
            W  C  +RRS++G+C+FLG +LISWK+KKQ  VSRSSAEAEYRA+  T  EL WL YI  
Sbjct: 1579 WGGCRMSRRSVSGYCVFLGSSLISWKSKKQTNVSRSSAEAEYRAMANTCLELTWLRYILK 1638

Query: 3320 DLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPSHL 3499
            DL V +  P PL+CDNQAAL+I ANPVFHERTKH+EIDCH+VR++ +AG I P  + + +
Sbjct: 1639 DLKVELDKPAPLFCDNQAALYIAANPVFHERTKHIEIDCHIVREKLQAGVIRPCYVSTKM 1698

Query: 3500 QLADVFTKALGVGLFGSLVFKLG 3568
            QLADVFTKALG   F  L  KLG
Sbjct: 1699 QLADVFTKALGREQFEFLCTKLG 1721



 Score =  357 bits (916), Expect = 4e-96
 Identities = 214/560 (38%), Positives = 305/560 (54%), Gaps = 5/560 (0%)
 Frame = +2

Query: 20   LCSHCQEHGHEKSECFRLHGYPDWYKKFKEQRGRSMVHCVDTNTQLNSKTQAEESGKEFQ 199
            +C HC   GH   EC  L     ++ KF ++RG +   C   N   N+KT      + F 
Sbjct: 535  MCDHCNRSGHTIDECRTLK----FHCKFCDKRGHTEDRCRLKNGS-NNKTGQFRGQRPFG 589

Query: 200  LTDISNIIKQELAKIMSTQHVAADSPIADTPMHYAHFVEYAGMSSHSSTQYAMTISG--- 370
              +      Q  A    +Q ++ DS  + T           G ++    Q A  I     
Sbjct: 590  RGN------QPSANATESQEMS-DSTSSSTVQ---------GFTTEQIQQLAQAIRALNH 633

Query: 371  -GVGDTDWILDT-GASKHMCVNQAIMSNIGPICSKIVVYLPDGSSKLVTHGGQVNLSSKL 544
               G+ D   +  GA+ H+  + ++ +++ P  +   V LP+G +  +TH G V   S+L
Sbjct: 634  SNSGNIDAYANAAGATDHIVSHMSLFTDLKP-SNVTTVNLPNGVASPITHTGTVIFDSQL 692

Query: 545  TLTDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYILQ 724
            TL DVL VPSF  NL+S S+L K  +    F+P YC+LQDL + +++  GK  G LY + 
Sbjct: 693  TLKDVLCVPSFNLNLISASKLAKDQNCYIIFFPDYCILQDLVSGKMIGSGKQRGGLYYMH 752

Query: 725  XXXXXXXXXXXXXXXVIPFPLACQSDYSLWHNKLGHASPTVLSHLPFLHSTCNKADKQIL 904
                            + F ++  SD  LWH +LGH S    S    L        K+I 
Sbjct: 753  PSTNKS----------VVFHVSQPSD--LWHLRLGHPS---FSRFKLLSRLLPDIHKEIG 797

Query: 905  SSCDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNAPYMLTIVDDFSRAT 1084
            + C +C ++KQTRL FP S       F L+H D+WGP+   +   + Y LTIVDDFSR T
Sbjct: 798  NHCPICPQAKQTRLPFPKSSITTKFPFSLLHCDVWGPHKIPAHTGSRYFLTIVDDFSRCT 857

Query: 1085 WIFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGIIHQRT 1264
            WIFL+HHKS+  S+L  F   VKTQF T V+T+R D G EF+           GI  Q +
Sbjct: 858  WIFLMHHKSETQSLLTNFVQFVKTQFHTDVQTVRMDNGTEFI--PLRIFLQNKGIELQTS 915

Query: 1265 CVYTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVIQWKTP 1444
            C+YTPQQNGVVERKHR +L++ R+LMF SN+P +FW   +LTA ++INR+P+ ++  K+P
Sbjct: 916  CIYTPQQNGVVERKHRHILNVARSLMFQSNVPLEFWGECVLTAVYLINRIPTPLLSNKSP 975

Query: 1445 YELLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLYDLDHK 1624
            +E+L+   P  +  + FGC  Y +NV P K KFD RA  CVFLGY  G+KG+K+ DL  +
Sbjct: 976  FEVLYNRPPSLTHLRVFGCECYVTNVHP-KQKFDPRASICVFLGYPHGKKGYKVLDLQTQ 1034

Query: 1625 ELLISRDVVFVEDQFPFHST 1684
            ++ +SRDV F E+ FPFHS+
Sbjct: 1035 KISVSRDVFFRENIFPFHSS 1054


>gb|KYP61781.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1413

 Score =  591 bits (1524), Expect = e-178
 Identities = 297/561 (52%), Positives = 383/561 (68%)
 Frame = +2

Query: 1889 MSDFILNQVTDHFAQAATSQMSLPAGGPYPILTYPYTVSPCFDTAYLSFLGNLHHLQEPH 2068
            + DF+ N +       ++   S P+G PY I  Y    +  F   Y  FL  +    EP 
Sbjct: 848  LRDFVANTICRLDPSPSSLATSRPSGTPYLITHYVNYNN--FSAHYRHFLAAVSIGTEPQ 905

Query: 2069 SYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSVERYK 2248
            S+ QA  D  W +AMQ E+ ALE N TWTL  LP GKK IGCKWVY+IK   DGS+ER+K
Sbjct: 906  SFAQAMKDEQWQQAMQAEIQALENNGTWTLEPLPPGKKAIGCKWVYRIKYNSDGSIERFK 965

Query: 2249 ARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGYLDED 2428
            ARLV  G NQV G+DY ++F+PVAK+ T+R L+A+A A+ W L Q+D++NAFLHG L E+
Sbjct: 966  ARLVILGNNQVEGLDYNETFAPVAKMVTMRTLLAVAAARKWELHQMDVHNAFLHGDLKEE 1025

Query: 2429 IYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHCLFVKC 2608
            +YM  P G+   A G+VC L++SLYGLKQA R W A+L G L  YGF QS+SDH LF   
Sbjct: 1026 VYMKLPPGFRSQASGKVCRLRKSLYGLKQAPRCWFAKLAGALKRYGFAQSSSDHSLFTLQ 1085

Query: 2609 TADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARSPSGTY 2788
                 L +++YVDD++++G+ +  +   K YL+A F +KDLG  KYFLG+E+AR+ +G +
Sbjct: 1086 RERVQLHVLVYVDDLVISGNDNAAIKAFKLYLNACFHMKDLGMLKYFLGIEVARNSTGIF 1145

Query: 2789 LNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLLYLNFTR 2968
            L QRKY LDI+ +VG+L  KPA  P  Q  +L    G    DPE+YRRLVGRL+YL+ TR
Sbjct: 1146 LCQRKYALDIISEVGLLGAKPAGFPMDQHHQLPLAKGTLLPDPERYRRLVGRLIYLSVTR 1205

Query: 2969 PDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSDADWAS 3148
            P+++YCV  L+QF+ +P   HW+AA  V+RYLKG P +G+   A+ D  L A+ D+DWAS
Sbjct: 1206 PELSYCVHTLAQFMQHPRQEHWDAALRVVRYLKGNPGQGILLRANCDLQLYAWCDSDWAS 1265

Query: 3149 CGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYIASDLA 3328
            C  TRRSLTG+ I LGD+ ISWKTKKQHTVSRSS+EAEYR++  T CELKWL  + S L 
Sbjct: 1266 CPLTRRSLTGWFILLGDSPISWKTKKQHTVSRSSSEAEYRSMATTTCELKWLKELLSCLG 1325

Query: 3329 VSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPSHLQLA 3508
             +  GP+ LYCDNQAALHI AN VFHERTKH+E+DCH V D+   G IS   +PSH QLA
Sbjct: 1326 CAHSGPMKLYCDNQAALHIAANLVFHERTKHIEVDCHFVHDELLQGTISTHHVPSHAQLA 1385

Query: 3509 DVFTKALGVGLFGSLVFKLGL 3571
            D+FTKALG   F  L+ KLG+
Sbjct: 1386 DIFTKALGKTQFDCLLSKLGI 1406



 Score =  353 bits (906), Expect = 5e-96
 Identities = 211/561 (37%), Positives = 304/561 (54%), Gaps = 9/561 (1%)
 Frame = +2

Query: 17   LLCSHCQEHGHEKSECFRLHGYPDWYKKFKEQRGRSMVHCVDTNTQLNSKTQAEESGKEF 196
            ++CS C   GH+   CF+L GYP+W+ +   + GR            + + +  + GK F
Sbjct: 234  VICSSCNRSGHDLESCFQLIGYPEWWGERPREIGRG-----------SGRGRVGQQGKTF 282

Query: 197  QLTDISNIIKQELAKIMSTQHVAADSPIADTPMHYAHFVEYAGMSSHS-STQYAMTISGG 373
                   + K  +A+  ST     ++ I D     A     +G++     T   +  +  
Sbjct: 283  GGRGRGALTKANVAQA-STGGPEFNAMITD-----ADKSTVSGLNGEQWQTLVNLLNNVK 336

Query: 374  VGDTDWILDTGASKHMCVNQAIMSNIGPICSKIVVYLPDGSSKLVTHGGQVNLSSKLTLT 553
            +G  + +  TGAS+HM      ++++  +  +  + LPDG     T  G V L+  L L 
Sbjct: 337  LGAAEKL--TGASRHMTGTIEYLTDVRNVL-QCPIGLPDGKQIFATREGTVVLNDTLKLN 393

Query: 554  DVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYILQXXX 733
             VL+VPS + NL+SVSQL    + K  F   +CV+QD     ++  G+    LY  Q   
Sbjct: 394  HVLYVPSLKCNLISVSQLINELNCKVQFTNKFCVIQDRILRTVIGAGEQREGLYYFQG-- 451

Query: 734  XXXXXXXXXXXXVIPFPLACQSD---YSLWHNKLGHASPTVLSHLPFL-----HSTCNKA 889
                        +     A +SD   + LWH +LGH SP V+  +P +      + CNKA
Sbjct: 452  ------------MTATAAAVKSDENVFDLWHKRLGHPSPKVVELIPNIGFSRSDALCNKA 499

Query: 890  DKQILSSCDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNAPYMLTIVDD 1069
                   CDVC ++KQ R SFP+S     VIF+LIH D+WGPY  +S   A Y LTIVDD
Sbjct: 500  -------CDVCLRAKQCRESFPISINKTMVIFQLIHCDLWGPYRTISHCGARYFLTIVDD 552

Query: 1070 FSRATWIFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGI 1249
            +SRA WI+LL  K +V + + +FF +V+ QFG  VK +RSD G EFV  +  + F  HGI
Sbjct: 553  YSRAVWIYLLEEKKEVFTRMCQFFAMVERQFGKQVKVVRSDNGTEFVCMD--SYFQNHGI 610

Query: 1250 IHQRTCVYTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVI 1429
            +H+ +C  TPQQNG VERKHR +L++ RAL F ++LP KFW   +LTA ++INR PS V+
Sbjct: 611  VHETSCTGTPQQNGRVERKHRHILNVARALRFQAHLPIKFWGECVLTAGYLINRTPSIVL 670

Query: 1430 QWKTPYELLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLY 1609
              KTPYE+L+   P  +  + FG L Y  N      KF +R+ +CVFLGY  G+KG+++Y
Sbjct: 671  HGKTPYEMLYNKPPSLNHLRVFGSLCYVHNRDSKGDKFASRSRRCVFLGYPYGKKGWRVY 730

Query: 1610 DLDHKELLISRDVVFVEDQFP 1672
            DL+    L SRDVVF E +FP
Sbjct: 731  DLELGVFLTSRDVVFSESEFP 751


>gb|KYP56739.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 581

 Score =  562 bits (1448), Expect = e-177
 Identities = 270/507 (53%), Positives = 355/507 (70%)
 Frame = +2

Query: 2057 QEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGSV 2236
            +EP  Y +A  D  W  AMQQEL ALE N TW+L TLP+GKKP+GCKWVYKIK   DG++
Sbjct: 70   REPIHYAEAVQDAKWRLAMQQELHALEANGTWSLETLPDGKKPLGCKWVYKIKHNSDGTI 129

Query: 2237 ERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHGY 2416
            ERYKARLV  G +Q  GVDY ++F+PV K+ TVR ++A+A  K W L Q+D++NAFLHG 
Sbjct: 130  ERYKARLVILGNHQKEGVDYTETFAPVVKMVTVRLVLAVAATKKWELHQMDVHNAFLHGD 189

Query: 2417 LDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHCL 2596
            L ED+YM  P G++ +    VC LK+SLYGLKQA R W A+L   L+ +GF QS  DH L
Sbjct: 190  LHEDVYMKLPPGFHASQPNHVCKLKKSLYGLKQAPRCWFAKLSSALINFGFRQSGCDHSL 249

Query: 2597 FVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARSP 2776
            F        + +++YVDD+++ G+ S  +   K YL   F +KDLG  KYFLG+E+AR+ 
Sbjct: 250  FTLLAHGVQMMVLVYVDDLIICGNDSAAIQRFKEYLSKCFHMKDLGHLKYFLGVEVARNS 309

Query: 2777 SGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLLYL 2956
            SG +L QRKY LDI+++ G+L  +P +TP  Q  +L    G     P++YRRLVGRL+YL
Sbjct: 310  SGIFLCQRKYALDIIQEAGLLGAQPVATPLEQNHQLGLATGRYIDQPDRYRRLVGRLIYL 369

Query: 2957 NFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSDA 3136
             FTRP+++YCV  LSQF+  P   HW AA  ++RYLKG P +G+   + SDF L  + D+
Sbjct: 370  CFTRPELSYCVHTLSQFMQQPREEHWNAAIRIVRYLKGSPGQGILLKSTSDFQLHGWCDS 429

Query: 3137 DWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYIA 3316
            DWA C  TRRS TG+ +FLG + ISWKTKKQHTVSRSSAEAEYR++  T CELKWL  + 
Sbjct: 430  DWAGCPLTRRSTTGWVVFLGHSPISWKTKKQHTVSRSSAEAEYRSMATTCCELKWLRSLL 489

Query: 3317 SDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPSH 3496
            ++L +S  GP+ L+CD+QAALHI  NPVFHERTKH+E+DCH +R++   G I P  +P+ 
Sbjct: 490  ANLGISHKGPMHLHCDSQAALHIAKNPVFHERTKHIEVDCHFIRNEILQGTIQPSYVPTQ 549

Query: 3497 LQLADVFTKALGVGLFGSLVFKLGLRD 3577
             QLAD+ TKALG   F +L+ KLG+R+
Sbjct: 550  EQLADILTKALGRHQFQTLLNKLGIRN 576


>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1136

 Score =  578 bits (1490), Expect = e-176
 Identities = 284/525 (54%), Positives = 367/525 (69%)
 Frame = +2

Query: 2033 FLGNLHHLQEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKI 2212
            ++ ++  + +P ++ +AS    W++AM +E+ ALE N+TW LTTLP  K  IGC+WVYK+
Sbjct: 613  YVFSISSVTKPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVYKV 672

Query: 2213 KMKPDGSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDI 2392
            K K DGS++RYKARLVAKGY Q+ G+D+ D+FSPVAKL TVR LI+LA     HL Q+D+
Sbjct: 673  KHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQLDV 732

Query: 2393 NNAFLHGYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFT 2572
            NN+FLHG L+E++YM  P G   +  GQVC L+RSLYGLKQASRQW A L   L+++G+ 
Sbjct: 733  NNSFLHGDLNEEVYMQLPPGITPSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHGYV 792

Query: 2573 QSASDHCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFL 2752
             S SDH LF+KC+     A++IYVDD++L G+   ++  L + LH  F IKDLG  KYFL
Sbjct: 793  PSPSDHSLFLKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKYFL 852

Query: 2753 GLELARSPSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRR 2932
            GLE+AR+ +G +L QRKY LD+L D GML  KP STP      L++  G P+ D   YRR
Sbjct: 853  GLEVARNHTGIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAYRR 912

Query: 2933 LVGRLLYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDF 3112
            LVGRL+YL  TRP I Y VQQLSQFV+NP   H +A   +L YLKG P  G+F   +S  
Sbjct: 913  LVGRLIYLPNTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNSSV 972

Query: 3113 SLVAYSDADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCE 3292
             L A+SD DWA C DTRRS+TGF ++LGD+LISWK+KKQ TVSRSS+EAEYRAL  T CE
Sbjct: 973  QLRAFSDYDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTTCE 1032

Query: 3293 LKWLSYIASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFI 3472
            L+WLSY+  D  + +  P  LYCDNQ AL I +NP+FHERTKH+EIDCH+VRD+   G +
Sbjct: 1033 LQWLSYLLKDFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTGLL 1092

Query: 3473 SPRKIPSHLQLADVFTKALGVGLFGSLVFKLGLRDFLHCPT*GGA 3607
                + S LQLAD+ TK L   +F S   KLG+ + +H    GG+
Sbjct: 1093 KLLPVSSSLQLADILTKPLSPFVFHSHYSKLGMLN-IHSQLEGGS 1136



 Score =  340 bits (872), Expect = 3e-93
 Identities = 203/558 (36%), Positives = 291/558 (52%), Gaps = 8/558 (1%)
 Frame = +2

Query: 23   CSHCQEHGHEKSECFRLHGYPDWYKKFKEQRGRSMVHCVDTNTQLNSKTQAEESGKEFQL 202
            C+HC + GH    C++ HG+P   K   ++   S+ H V  + ++   TQ+ ES      
Sbjct: 1    CTHCGKTGHTIEVCYQKHGFPPGSKPLSDKTA-SVNHTVTGDCKVTESTQSLES------ 53

Query: 203  TDISNIIKQELAKIMSTQHVAADSPIADTPMHYAHFVEYAGMS----SHSSTQYAMTISG 370
                                     +  TP  Y   +     S    S S T + +  S 
Sbjct: 54   -----------------------QDVRFTPQQYQALLALIQQSTTGTSASCTSFPIVCSA 90

Query: 371  GVGDTDWILDTGASKHMCVNQAIMSNIGPICSKIVVYLPDGSSKLVTHGGQVNLSSKLTL 550
                + WILD+GA+ H+    +  S+  PI + I V LP G     TH G V  ++   L
Sbjct: 91   ISTPSSWILDSGATDHVSSTLSHFSSFSPI-NPIDVKLPTGQHVSATHSGIVKFTNSFYL 149

Query: 551  TDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYILQXX 730
             DVL++P F YNL+S+S+L  S S +  F    C++Q+  T + +    V G LY     
Sbjct: 150  VDVLYIPDFTYNLISISKLVSSLSCQFIFDRHSCIIQETNTMKKIGTVDVNGGLYSFTAN 209

Query: 731  XXXXXXXXXXXXXVIPFPLACQSDYSLWHNKLGHASPTVLSHL----PFLHSTCNKADKQ 898
                         +I  P        LWH ++GH S   L  +    PFL       DK 
Sbjct: 210  NIHNPSTNS----IIVHPKCSIQPIDLWHFRMGHLSQERLQLMKQSFPFL-----SVDKS 260

Query: 899  ILSSCDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNAPYMLTIVDDFSR 1078
               SC+ CH  KQ +LSFPLS ++A   F+L+H+DIWGP    S+    Y L IVDD +R
Sbjct: 261  F--SCNTCHHDKQKKLSFPLSHSYALQPFDLLHMDIWGPCPVTSMHGHKYFLAIVDDHTR 318

Query: 1079 ATWIFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGIIHQ 1258
             TW+FL+ +KS+    +  F   V+TQF  +VK IR+D GLEF   +    F + GIIHQ
Sbjct: 319  FTWLFLMQNKSETRQHIINFINQVETQFDKNVKVIRTDNGLEF---SMTQYFSSKGIIHQ 375

Query: 1259 RTCVYTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVIQWK 1438
             TCV TPQQNG+VERKH+ LL++ R+L+F +NLPS FW FAL  A F+IN +P+  +   
Sbjct: 376  TTCVETPQQNGIVERKHQHLLNVTRSLLFQANLPSIFWCFALKHAAFLINCIPTPFLHNI 435

Query: 1439 TPYELLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLYDLD 1618
            +P+E L+ H  D SI + FGCL Y+S ++ H++K D RA  C+FLG++   KG+ L +L 
Sbjct: 436  SPFEKLYGHPCDISILRVFGCLCYSSIITSHRTKLDPRAHPCIFLGFKPHTKGYLLVNLH 495

Query: 1619 HKELLISRDVVFVEDQFP 1672
               LL+S++V+F ED FP
Sbjct: 496  THGLLVSQNVIFHEDHFP 513


>gb|KYP40677.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 810

 Score =  567 bits (1461), Expect = e-176
 Identities = 273/526 (51%), Positives = 368/526 (69%)
 Frame = +2

Query: 2009 CFDTAYLSFLGNLHHLQEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPI 2188
            C++T       N  +    + +K+AS+   W +AM  EL ALE+N TW+L TLP GKK I
Sbjct: 283  CYNTVSSDSTSNSLYPMHLYIFKEASTKDCWKQAMIAELDALERNRTWSLVTLPPGKKLI 342

Query: 2189 GCKWVYKIKMKPDGSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKG 2368
            GCKWVY+ K K +G+VERYKARLVAKG+ Q  G+DY ++FSPVAK+ ++RFL+ALA++  
Sbjct: 343  GCKWVYRTKHKANGTVERYKARLVAKGFTQTEGIDYFETFSPVAKITSIRFLLALASSHN 402

Query: 2369 WHLSQVDINNAFLHGYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCG 2548
            W + Q+DI+NAFLHG LDE++YM PP+G    +   VC L++SLYGLKQASR WN +L  
Sbjct: 403  WFIHQLDIDNAFLHGDLDEEVYMRPPQGLRLPSSKLVCKLEKSLYGLKQASRNWNQKLTS 462

Query: 2549 KLLEYGFTQSASDHCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKD 2728
            +L   G+ QS +DH LFV  T  S   L+IYVDD++L+G+   ++  +KA+LH  F IKD
Sbjct: 463  ELTLMGYKQSFADHSLFVNFTGSSITILLIYVDDIVLSGNDMTEIKKVKAHLHNKFHIKD 522

Query: 2729 LGEAKYFLGLELARSPSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPY 2908
            LG  K+FLGLE+ARS  G  LNQRKY L+++ + G+L CKPA TP    +KL+   G   
Sbjct: 523  LGSLKFFLGLEVARSKKGILLNQRKYCLELIDETGLLGCKPAPTPADPAMKLHVDHGDLL 582

Query: 2909 RDPEQYRRLVGRLLYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGL 3088
             DP  +RRL+GRLLYL  TRPDI++ VQQLSQFV+ P   H +AA  ++RYLKG P  GL
Sbjct: 583  HDPTVFRRLIGRLLYLTNTRPDISFSVQQLSQFVSKPREPHMQAALRIVRYLKGAPGLGL 642

Query: 3089 FYPAHSDFSLVAYSDADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYR 3268
            FY + +   + A+SD+DWA+C  TRRS+TG+C+F+G++LISWK+KKQ TVSRSS+EAEYR
Sbjct: 643  FYSSTNPLKIQAFSDSDWATCATTRRSVTGYCVFIGNSLISWKSKKQSTVSRSSSEAEYR 702

Query: 3269 ALGATVCELKWLSYIASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVR 3448
            AL +  CEL+WL Y+   + + IP P   + D+Q+A+ I  NP FHERTKH+E+DCHL+R
Sbjct: 703  ALASLTCELQWLKYLCDSMHIKIPTPFATFSDSQSAIQISKNPTFHERTKHIEVDCHLIR 762

Query: 3449 DQYKAGFISPRKIPSHLQLADVFTKALGVGLFGSLVFKLGLRDFLH 3586
             + + G +    + S  QLAD FTKAL    F + + KLGL +  H
Sbjct: 763  IKIQEGLLHLIHVLSANQLADAFTKALFPKPFHTAISKLGLLNIYH 808



 Score =  183 bits (465), Expect = 1e-43
 Identities = 85/193 (44%), Positives = 130/193 (67%)
 Frame = +2

Query: 1097 LHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGIIHQRTCVYT 1276
            + +K++V S+L+ F LL + QF   +K +RSD G EF+ K+    F+  GI+H+ +CV T
Sbjct: 1    MKNKTEVRSILQNFILLTENQFSCKLKKLRSDNGKEFILKD---FFNTKGILHETSCVET 57

Query: 1277 PQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVIQWKTPYELL 1456
            PQQNG+VERKH+ +L++ R+L+F S +P  FW FA+  A  IINRLP+  +  K+P+E++
Sbjct: 58   PQQNGIVERKHQHILNVCRSLLFQSKVPKSFWSFAIKHAVHIINRLPTPFLNNKSPFEMI 117

Query: 1457 HKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLYDLDHKELLI 1636
                P+    K FGCLAY S +S  ++K + RA KC+FLG++ G KGF L++L  K +L+
Sbjct: 118  FNQKPNLHDLKTFGCLAYVSTLSGGRNKLEPRAHKCIFLGFKTGTKGFVLFNLHSKSILL 177

Query: 1637 SRDVVFVEDQFPF 1675
            SR  +F +  FP+
Sbjct: 178  SRHAIFHQTVFPY 190


>gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1427

 Score =  585 bits (1509), Expect = e-176
 Identities = 294/533 (55%), Positives = 373/533 (69%), Gaps = 3/533 (0%)
 Frame = +2

Query: 1982 LTYPYTVSPCFDT---AYLSFLGNLHHLQEPHSYKQASSDPLWVEAMQQELLALEKNDTW 2152
            + YP      +D+   +Y  ++ ++    EPH++ QA  + +WVEAMQ EL ALE N TW
Sbjct: 873  IRYPLNTVLSYDSLSASYSRYVLSITTHVEPHTFNQAVKNKVWVEAMQAELDALEHNKTW 932

Query: 2153 TLTTLPEGKKPIGCKWVYKIKMKPDGSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLAT 2332
            T+  LP GK PIG KWVYKIK K DGS+ERYKARLV KGY Q+ G+DY D+F+PVAKL+T
Sbjct: 933  TIMPLPPGKTPIGSKWVYKIKYKSDGSIERYKARLVVKGYTQIQGLDYFDTFAPVAKLST 992

Query: 2333 VRFLIALATAKGWHLSQVDINNAFLHGYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLK 2512
            VR L+A+A+ + W L Q+DINNAFLHG L ED+YM  P+G N      VC L +SLYGLK
Sbjct: 993  VRMLLAIASCQHWELHQLDINNAFLHGDLLEDVYMEIPQGLNIDKPNHVCKLNKSLYGLK 1052

Query: 2513 QASRQWNAELCGKLLEYGFTQSASDHCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDL 2692
            QASRQW A+L   LL   + QS  DH LF K     F  ++IYVDD+++ G+ S++++ +
Sbjct: 1053 QASRQWFAKLSSFLLSLHYKQSQHDHSLFTKHHGTHFTVILIYVDDLIIAGTDSEEINHI 1112

Query: 2693 KAYLHALFTIKDLGEAKYFLGLELARSPSGTYLNQRKYILDILKDVGMLECKPASTPFPQ 2872
            K  L   F IKDLG  +YFLGLE+ARS  G  L+QRKY LD+L +   L  KP  TP  +
Sbjct: 1113 KQSLDVKFKIKDLGPLRYFLGLEIARSHLGISLSQRKYTLDLLDETSFLAGKPVLTPIIK 1172

Query: 2873 GLKLNSRDGVPYRDPEQYRRLVGRLLYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHV 3052
            G +L+     PY DP  YRRL+G+LLYL  TRPDI+Y VQQLSQF++ P  +H++AA  V
Sbjct: 1173 GTRLSHTTDSPYEDPAGYRRLIGKLLYLITTRPDISYSVQQLSQFLSCPQQSHYQAAIRV 1232

Query: 3053 LRYLKGCPSKGLFYPAHSDFSLVAYSDADWASCGDTRRSLTGFCIFLGDALISWKTKKQH 3232
            LRYLKG P +GLFYPA S   L A+SD+DWASC DTRRSL+G+ IFLG++LISWK KKQ 
Sbjct: 1233 LRYLKGNPGQGLFYPADSPLQLKAFSDSDWASCPDTRRSLSGYSIFLGNSLISWKCKKQS 1292

Query: 3233 TVSRSSAEAEYRALGATVCELKWLSYIASDLAVSIPGPIPLYCDNQAALHIVANPVFHER 3412
            T+SRSS+EAEYRAL AT CE++WL+Y+  D +V    P  LYCDNQ+A HI +N VFHER
Sbjct: 1293 TISRSSSEAEYRALAATACEIQWLTYLLQDFSVPFTTPALLYCDNQSARHIASNAVFHER 1352

Query: 3413 TKHLEIDCHLVRDQYKAGFISPRKIPSHLQLADVFTKALGVGLFGSLVFKLGL 3571
            TKH+EIDCHLVR++ +AG      I S  QLAD+ TK L    F  L+ KLG+
Sbjct: 1353 TKHIEIDCHLVREKLQAGLFHLLPIASSHQLADILTKPLDPSPFQYLLSKLGV 1405



 Score =  350 bits (898), Expect = 5e-95
 Identities = 204/562 (36%), Positives = 304/562 (54%), Gaps = 10/562 (1%)
 Frame = +2

Query: 20   LCSHCQEHGHEKSECFRLHGYPDWYKKFKEQRGRSMVHCVDT---NTQLN--SKTQAEES 184
            +C+ C +  H    C+  HG+P  +K FK++   + ++ + +   +TQ +  S+ Q +ES
Sbjct: 233  VCTFCGKENHTIDSCYFKHGFPPNFK-FKDKGNTTSINTISSKAPSTQASEISRKQNKES 291

Query: 185  GKEFQLTDISNIIKQ-ELAKIMSTQHVAADSPIADTPMHYAHFVEYAGMSSHSSTQYAMT 361
               F   D  ++I   + AK+ S +H                 V      S SS+     
Sbjct: 292  TSNFTHEDYDHLIDMLKRAKLQSPEH------------SINQLVHQTTTESVSSSNLQQN 339

Query: 362  ISGG-VGDTDWILDTGASKHMCVNQAIMSNIGPICSKIVVYLPDGSSKLVTHGGQVNLSS 538
              G  +  TDWILDTGA+ H+C +    +   PI   + V LP+G++      G +  S 
Sbjct: 340  QPGNPLEHTDWILDTGATDHVCNSLYFFTKYHPI-DPVHVKLPNGNTSTAQFSGTIIFSE 398

Query: 539  KLTLTDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYI 718
            K  L DVL++P+F  N++SV ++  S   +  F    C++QDL +++ + + +V  +LYI
Sbjct: 399  KFFLNDVLYIPNFHLNIISVQKIAASLDYELMFNKNSCIIQDLTSKKTIGLAEVKNHLYI 458

Query: 719  LQXXXXXXXXXXXXXXXVIPF-PLACQSDYSLWHNKLGHASPTVLSHLP--FLHSTCNKA 889
            LQ               V+   P    S + LWH +LGH S  VL  +   F + T NK 
Sbjct: 459  LQRPSKDNSISACKSNSVLNAQPKGTTSSFDLWHYRLGHPSHVVLQTVKRLFPYVTYNKN 518

Query: 890  DKQILSSCDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNAPYMLTIVDD 1069
                  +CD CH  KQ RL FP S T +   F+L+H+DIWGP A  S+    Y LTIVDD
Sbjct: 519  -----ITCDYCHFGKQARLPFPTSTTKSLSCFDLVHMDIWGPLAIPSIHGHKYFLTIVDD 573

Query: 1070 FSRATWIFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGI 1249
            +SR TWI+ +  K +  ++++ F   V+TQF   +K +RSD G+EF       L+  +GI
Sbjct: 574  YSRHTWIYFMKSKGETRNLIQNFISYVQTQFTKHIKVLRSDNGVEFAMDQ---LYATYGI 630

Query: 1250 IHQRTCVYTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVI 1429
            +HQ +CV TPQQN VVERKHR +L++ R L+FHSN+P  FW +A+  A  +INRLPS V+
Sbjct: 631  VHQTSCVETPQQNSVVERKHRHILNITRTLLFHSNVPKSFWCYAVGHAIHLINRLPSPVL 690

Query: 1430 QWKTPYELLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLY 1609
               +PY++L+   P     K FG L YAS +   +SK   +A K V+LG +QG KGF + 
Sbjct: 691  NNSSPYQMLYDKPPTLLDLKVFGSLCYASTLVQGRSKLAPKATKGVYLGVKQGTKGFLVL 750

Query: 1610 DLDHKELLISRDVVFVEDQFPF 1675
            DL  + + +SR+VVF E  FPF
Sbjct: 751  DLLTRSIFVSRNVVFYEHIFPF 772


>ref|XP_014628734.1| PREDICTED: uncharacterized protein LOC106794221 [Glycine max]
          Length = 1150

 Score =  573 bits (1477), Expect = e-174
 Identities = 285/527 (54%), Positives = 363/527 (68%), Gaps = 2/527 (0%)
 Frame = +2

Query: 2018 TAYLSFLGNLHHLQEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCK 2197
            ++Y SF+ N+    EP SY +A     WV+AM  E+ ALE+N+TW LT LP+ K  IGCK
Sbjct: 306  SSYHSFILNISANSEPKSYNEACKHDSWVQAMHDEISALERNNTWVLTDLPQHKNVIGCK 365

Query: 2198 WVYKIKMKPDGSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHL 2377
            WVYKIK   DGS+ERYKARLVAKGY Q+ G+DYLD+FSPVAK+ TVR L+ALA    W+L
Sbjct: 366  WVYKIKHNSDGSIERYKARLVAKGYTQIEGLDYLDTFSPVAKITTVRLLLALAALNNWYL 425

Query: 2378 SQVDINNAFLHGYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLL 2557
             Q+D+NNAFLHG L E++YM  P G   A  GQVC L+RSLYGLKQASRQW A L   L 
Sbjct: 426  RQLDVNNAFLHGGLHEEVYMVLPPGMKSAKPGQVCKLQRSLYGLKQASRQWYARLSTFLA 485

Query: 2558 EYGFTQSASDHCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGE 2737
             +GF QS +D+ LF    A+SF AL++YVDD++L+G+    +S +   L   F IKDLG 
Sbjct: 486  HHGFKQSVADYSLFTLKKANSFTALLVYVDDIVLSGNDLSVISSITKLLDDTFKIKDLGN 545

Query: 2738 AKYFLGLELARSPSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDP 2917
             KYFLG E+AR  SG  + QRKY LD+L D  ML CKP STPF    +L+   G    D 
Sbjct: 546  LKYFLGFEVARGTSGINICQRKYALDLLTDTDMLHCKPVSTPFDYYTRLHQASGSMLSDS 605

Query: 2918 E--QYRRLVGRLLYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLF 3091
            +   YR L+GRL+YL  TRPDIT+ VQ LSQF+ +P   H+ A   +LRY+K  P  GLF
Sbjct: 606  QISSYRCLIGRLIYLTNTRPDITFAVQHLSQFIASPTTAHYTALYRILRYIKAAPGLGLF 665

Query: 3092 YPAHSDFSLVAYSDADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRA 3271
            +P+ S+  L A+SD+DWA C DTR+S+TGF ++LG +LISWK+KKQ  VSRSS EA YRA
Sbjct: 666  FPSTSELQLKAFSDSDWAGCVDTRKSITGFSVYLGSSLISWKSKKQAIVSRSSFEAGYRA 725

Query: 3272 LGATVCELKWLSYIASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRD 3451
            L +  CE++WL+Y+  D  ++   P  ++CDN++ LHI  NPVFHERTKH+EIDCH+VRD
Sbjct: 726  LTSVTCEIQWLTYLLHDFDITYK-PALVFCDNKSGLHIAVNPVFHERTKHIEIDCHIVRD 784

Query: 3452 QYKAGFISPRKIPSHLQLADVFTKALGVGLFGSLVFKLGLRDFLHCP 3592
            +  +G I    I S  QLADV+TKAL  G F  +  KLG+ D +H P
Sbjct: 785  KLLSGLIKLLPIASQQQLADVYTKALAPGAFRFICSKLGMND-IHSP 830


>gb|KOM46937.1| hypothetical protein LR48_Vigan07g064100 [Vigna angularis]
          Length = 763

 Score =  559 bits (1440), Expect = e-174
 Identities = 290/573 (50%), Positives = 375/573 (65%)
 Frame = +2

Query: 1868 VSHKPSWMSDFILNQVTDHFAQAATSQMSLPAGGPYPILTYPYTVSPCFDTAYLSFLGNL 2047
            V   P +++D++ +QV    +     +       PYPI       S      +L +   +
Sbjct: 198  VRRTPEYLNDYV-HQVNQSLSMKNNFKT------PYPISDLLSCDS--LTEKHLKYTMTI 248

Query: 2048 HHLQEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPD 2227
                EP SY +A     W EAMQ+E+ AL+ N+T  LT LP GKKPIGC+WVYK K   D
Sbjct: 249  TANDEPRSYNEAKGMCEWEEAMQREIKALQDNNTRYLTQLPPGKKPIGCRWVYKTKYNVD 308

Query: 2228 GSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFL 2407
            G++ERYKARLVAKGY Q  G+DYLD+FSPVAKL TVR LI LA +  W L Q+D+ NAFL
Sbjct: 309  GTIERYKARLVAKGYTQQEGIDYLDTFSPVAKLTTVRLLIVLAASNNWFLHQLDVENAFL 368

Query: 2408 HGYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASD 2587
             G L+E++YM PP G N    GQVC L +SLYGLKQASRQW  +L   L+   + QS SD
Sbjct: 369  RGDLNEEVYMEPPPGLNTHKEGQVCRLTKSLYGLKQASRQWFEKLSSFLISVNYIQSKSD 428

Query: 2588 HCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELA 2767
            H LF+K T+  F AL++YVDD++L G+   +++++K  LH  F IK+LGE KYFLGLE+A
Sbjct: 429  HSLFIKGTSTDFTALLVYVDDIILAGNSMTEINNVKTLLHNKFQIKNLGELKYFLGLEVA 488

Query: 2768 RSPSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRL 2947
            RS  G +L QRKY LDILK+ GML CKP+STPF        R      D   YRRL+G+L
Sbjct: 489  RSKKGIHLCQRKYALDILKETGMLGCKPSSTPFLSDTSSLYRTDSYLDDLGSYRRLIGKL 548

Query: 2948 LYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAY 3127
            LYL  TRPD+ + +  LSQF+ +P + H+ A  HVLRY K  PS+GLF+   S   L A+
Sbjct: 549  LYLTNTRPDLCFSINLLSQFMKSPTNHHYRAVQHVLRYTKSKPSEGLFFGDDSPVHLKAF 608

Query: 3128 SDADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLS 3307
            SD+DWA+C +TRRS TGFC+FLG +LISWK+KKQ TVSRSS +AEYRAL AT+CE++W+ 
Sbjct: 609  SDSDWATCPNTRRSTTGFCVFLGSSLISWKSKKQSTVSRSSTKAEYRALAATLCEIQWIH 668

Query: 3308 YIASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKI 3487
            Y+  DL V       LYCDN++A HI  N  FHERTKH+E+DCH+VR++ +   +    +
Sbjct: 669  YLQQDLQVQEAETPALYCDNKSARHIAHNQSFHERTKHIELDCHVVREKIQENLLRLLPV 728

Query: 3488 PSHLQLADVFTKALGVGLFGSLVFKLGLRDFLH 3586
             S+ QLAD+FTK      F S+V KLGL    H
Sbjct: 729  RSNEQLADIFTKFPHRVRFKSIVPKLGLVSIHH 761



 Score =  142 bits (358), Expect = 1e-30
 Identities = 65/152 (42%), Positives = 100/152 (65%)
 Frame = +2

Query: 1097 LHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGIIHQRTCVYT 1276
            +++K Q   +L+ F + +K QF   +KTIRSD G EF   NC  L+  +GI HQ++CV T
Sbjct: 1    MNNKGQTRDLLQNFIVKIKNQFDKVIKTIRSDNGPEF---NCVNLYDLYGIDHQKSCVET 57

Query: 1277 PQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVIQWKTPYELL 1456
            P+QN VVERKH+ +L++ R+L+F SN+P+ +W + +    ++INRL S ++  KTPY+L+
Sbjct: 58   PEQNSVVERKHQHILNVTRSLLFQSNMPNAYWSYDVSHVVYLINRLSSPILNNKTPYDLV 117

Query: 1457 HKHSPDYSIFKPFGCLAYASNVSPHKSKFDAR 1552
            +   P Y   K FGCL +AS +   ++K D R
Sbjct: 118  YNVPPTYLNLKVFGCLCFASTLENSRNKLDPR 149


>gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1346

 Score =  578 bits (1489), Expect = e-174
 Identities = 286/552 (51%), Positives = 377/552 (68%), Gaps = 2/552 (0%)
 Frame = +2

Query: 1880 PSWMSDFILNQVTDHFAQAATSQMSLPAG--GPYPILTYPYTVSPCFDTAYLSFLGNLHH 2053
            P  +SD++ +  +       TS  SL +G    YP+ ++          ++ +F  ++ H
Sbjct: 803  PLHLSDYVCHNTSP------TSHESLTSGTKSKYPLSSFHSLT--LLSPSHKAFSMSITH 854

Query: 2054 LQEPHSYKQASSDPLWVEAMQQELLALEKNDTWTLTTLPEGKKPIGCKWVYKIKMKPDGS 2233
              EP SY++AS    WV AM++EL AL KN TW +  LP   KPIGCKWVYK+K K +G 
Sbjct: 855  CTEPQSYEEASKHEHWVTAMKEELNALAKNCTWKIVELPPHTKPIGCKWVYKVKHKANGQ 914

Query: 2234 VERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDINNAFLHG 2413
            +ERYKARLVAKGYNQV G+DY ++FSPVAK+ TVR L+A+A  K WHL Q+D+NNAFLHG
Sbjct: 915  IERYKARLVAKGYNQVEGIDYFETFSPVAKITTVRTLLAVAAIKNWHLHQLDVNNAFLHG 974

Query: 2414 YLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQSASDHC 2593
             L ED+YM  P+G   A    VC L++SLYGLKQASR+W  +L   LL+ G+ QS SD+ 
Sbjct: 975  DLQEDVYMKIPDGVTCAKPNSVCKLQKSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYS 1034

Query: 2594 LFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLGLELARS 2773
            LF     ++F AL++YVDD++L G    +   +K  L   F IK+LG+ KYFLGLE+A S
Sbjct: 1035 LFTLTKGNTFTALLVYVDDIILAGDSIDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHS 1094

Query: 2774 PSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRLVGRLLY 2953
              G  ++QRKY LD+LKD G+L CKPASTP    +KL+S  G PY D   YRR+VG+LLY
Sbjct: 1095 RLGITISQRKYCLDLLKDSGLLGCKPASTPLDTSIKLHSAAGTPYADISGYRRIVGKLLY 1154

Query: 2954 LNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFSLVAYSD 3133
            LN TRPDI +  QQLSQF+  P + H+ AA  VLRYLK  P +G+F+   S+  L+ YSD
Sbjct: 1155 LNTTRPDIAFATQQLSQFMQAPTNVHFNAACRVLRYLKNNPGQGIFFSRTSEMQLIGYSD 1214

Query: 3134 ADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCELKWLSYI 3313
            ADWA C D+R+S++G+C F+G +L+SW+ KKQ TVSRSS+EAEYRAL +  CEL+WL Y+
Sbjct: 1215 ADWAGCMDSRKSISGYCFFIGKSLVSWRAKKQATVSRSSSEAEYRALSSAACELQWLLYL 1274

Query: 3314 ASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFISPRKIPS 3493
             +DL V +     LYCDNQ+A+HI +NPVFHERTKHLEIDCHLVR++   G +    + +
Sbjct: 1275 FADLRVQLTRTPTLYCDNQSAVHIASNPVFHERTKHLEIDCHLVREKLLKGTLKLLPVST 1334

Query: 3494 HLQLADVFTKAL 3529
              Q+AD  TKAL
Sbjct: 1335 SDQVADFLTKAL 1346



 Score =  314 bits (804), Expect = 1e-83
 Identities = 189/561 (33%), Positives = 280/561 (49%), Gaps = 1/561 (0%)
 Frame = +2

Query: 11   AKLLCSHCQEHGHEKSECFRLHGYPDWYKKFKEQRGRSMVHCVDTNTQLNSKTQAEESGK 190
            +K  C++C +  H    CF+ HG P    K                           SG 
Sbjct: 227  SKRYCTYCHKTNHFVENCFQKHGVPPHMMK-------------------------NHSG- 260

Query: 191  EFQLTDISNIIKQELAKIMSTQHVAADSPIADTPMHYAHFVEYAGMSSHSSTQYAMTISG 370
                               S  H A D       M  +HF             +  +I  
Sbjct: 261  -------------------SAHHSAVDGGEHTKGMKISHF-------------FYSSICN 288

Query: 371  GVGDTDWILDTGASKHMCVNQAIMSNIGPICSKIVVYLPDGSSKLVTHGGQVNLSSKLTL 550
             +    WI+D+GAS H+C +     +   I + +++ LP+G+     + G V  SS  ++
Sbjct: 289  NIALDTWIIDSGASHHICASLHWFHSYSEI-NPMIIKLPNGNHVTTKYAGTVVFSSSFSI 347

Query: 551  TDVLHVPSFRYNLLSVSQLTKSSSLKCTFYPTYCVLQDLRTEEIVAMGKVLGNLYILQXX 730
            T+VL+VP+F  NL+SVSQL   +     F  T C +Q+ ++ +++ +G+    LY L   
Sbjct: 348  TNVLYVPTFTVNLISVSQLCHHTPYTLNFTDTICSIQEQKSLKMIGLGESRDGLYYLTQT 407

Query: 731  XXXXXXXXXXXXXVIPFPLACQ-SDYSLWHNKLGHASPTVLSHLPFLHSTCNKADKQILS 907
                         +          + ++WH +LGH S    S +  LHS          S
Sbjct: 408  NKECASSNYNISSIFSSANNVHIPENAIWHFRLGHLSS---SRIALLHSQFPFIVNDSSS 464

Query: 908  SCDVCHKSKQTRLSFPLSETHASVIFELIHVDIWGPYAAVSLLNAPYMLTIVDDFSRATW 1087
             CD+CH +K  +L F  S   A   F+LIH DIWGP +  S+ N  Y LT VDD SR TW
Sbjct: 465  VCDICHFAKHRKLPFVHSYHKAIKCFDLIHFDIWGPISIKSVHNHAYFLTAVDDHSRYTW 524

Query: 1088 IFLLHHKSQVHSMLEKFFLLVKTQFGTSVKTIRSDKGLEFVNKNCATLFHAHGIIHQRTC 1267
            I L+ +KS+    ++ F   +KTQ+  SVK+IR+D G EF+  +    + + GI+HQ +C
Sbjct: 525  ITLMKNKSEARLHVQNFIHFIKTQYNHSVKSIRTDNGPEFLMPD---FYASKGILHQTSC 581

Query: 1268 VYTPQQNGVVERKHRTLLDMGRALMFHSNLPSKFWPFALLTATFIINRLPSSVIQWKTPY 1447
            V +PQQNG VERKH+ +L++GRAL+  SNLP  FW +A+  A +I+NR+P+  +Q K+PY
Sbjct: 582  VDSPQQNGRVERKHQQILNIGRALLVQSNLPKSFWCYAVSHAVYIMNRVPAPNLQNKSPY 641

Query: 1448 ELLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLYDLDHKE 1627
             LL+  +PD+   K FG L +AS +  H++K D RA KCVFLGY+ G KG  L DL +  
Sbjct: 642  TLLYNTAPDFDTLKVFGSLVFASTLQSHRTKLDLRARKCVFLGYKSGVKGVVLLDLLNNS 701

Query: 1628 LLISRDVVFVEDQFPFHSTLP 1690
            + +SRDV   E  FP+ S+ P
Sbjct: 702  IFLSRDVTHHEHIFPYQSSSP 722


>gb|KYP38774.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 727

 Score =  557 bits (1436), Expect = e-174
 Identities = 292/583 (50%), Positives = 385/583 (66%), Gaps = 9/583 (1%)
 Frame = +2

Query: 1883 SWMSDFILNQVTDHFAQAATSQMSLPAGGPYP---ILTYPYTVSPCFDTAYLSFLGNLHH 2053
            ++++D+  N +T H         S+     YP   +L+Y   +SP     +  F   +  
Sbjct: 154  AYLTDYHCNLLTGH-------DTSIFKDARYPLSTVLSYS-NLSP----THSHFTLIISS 201

Query: 2054 LQEPHSYKQ-ASSDPLWVEAMQQELLALEKNDTWTLTTLPE-----GKKPIGCKWVYKIK 2215
            L EP +Y + A     W++AMQ EL AL  N TW+L  LP      GK PIG KWVYKIK
Sbjct: 202  LIEPKNYLELAIKSEHWIKAMQNELDALRLNRTWSLVNLPTVNLPTGKVPIGSKWVYKIK 261

Query: 2216 MKPDGSVERYKARLVAKGYNQVYGVDYLDSFSPVAKLATVRFLIALATAKGWHLSQVDIN 2395
             K DG++ERYKARLVAKGYNQ+ G+DY D+F+PVAK+ TVR L+A+A+ + W L Q+DIN
Sbjct: 262  YKSDGTIERYKARLVAKGYNQIEGLDYFDTFAPVAKITTVRMLLAIASCQKWELHQLDIN 321

Query: 2396 NAFLHGYLDEDIYMTPPEGYNQAAVGQVCHLKRSLYGLKQASRQWNAELCGKLLEYGFTQ 2575
            NAFLHG L+E++YM  P+G        VC L +SLYGLKQAS+QW A+L   L    + Q
Sbjct: 322  NAFLHGDLNEEVYMQIPQGLTSPKPNLVCKLHKSLYGLKQASKQWFAKLSNFLQTMNYKQ 381

Query: 2576 SASDHCLFVKCTADSFLALVIYVDDVLLTGSHSQQLSDLKAYLHALFTIKDLGEAKYFLG 2755
            S +DH LF K   + F  +++YVDD+++ G+ S ++  +K  L A F IKDLG  KYFLG
Sbjct: 382  SPNDHSLFTKHINNHFTLILVYVDDLIIGGTDSSEIVSIKGILDAQFKIKDLGHLKYFLG 441

Query: 2756 LELARSPSGTYLNQRKYILDILKDVGMLECKPASTPFPQGLKLNSRDGVPYRDPEQYRRL 2935
            LE+ARS  G +L+QRKY LD+L D G L  KP  TP  +  K +  DG PY DP  YRRL
Sbjct: 442  LEVARSHLGIHLSQRKYALDLLSDTGFLAAKPVPTPMVKTNKASQSDGTPYADPAGYRRL 501

Query: 2936 VGRLLYLNFTRPDITYCVQQLSQFVNNPLHTHWEAATHVLRYLKGCPSKGLFYPAHSDFS 3115
            VG+LLYL  TRPDI++ VQQLSQ +++P   H+ AAT VLRYLKG P +GLFYPA S   
Sbjct: 502  VGKLLYLTTTRPDISFAVQQLSQHISSPSTAHYMAATRVLRYLKGNPGQGLFYPAQSPSQ 561

Query: 3116 LVAYSDADWASCGDTRRSLTGFCIFLGDALISWKTKKQHTVSRSSAEAEYRALGATVCEL 3295
            L A+SD+DW SC  + RS++G+CIFLGD+LISWK KKQ T+SRSS+EAEYRAL  TVCE+
Sbjct: 562  LKAFSDSDWGSCPTSCRSVSGYCIFLGDSLISWKCKKQSTISRSSSEAEYRALANTVCEI 621

Query: 3296 KWLSYIASDLAVSIPGPIPLYCDNQAALHIVANPVFHERTKHLEIDCHLVRDQYKAGFIS 3475
            +WL+Y+  D  +       LYCDNQ+A +I  NPVFHERTKH+++DCH++R++ +A    
Sbjct: 622  QWLTYLLHDFVIPFTSHALLYCDNQSARYIATNPVFHERTKHIDLDCHIIREKLQAKLFH 681

Query: 3476 PRKIPSHLQLADVFTKALGVGLFGSLVFKLGLRDFLHCPT*GG 3604
               I S  QLAD+ TK L    F  L+ KLG+ + ++ P  GG
Sbjct: 682  LLPIRSTEQLADILTKPLEPTPFNYLLSKLGVLN-IYSPACGG 723



 Score = 72.8 bits (177), Expect = 4e-09
 Identities = 32/82 (39%), Positives = 52/82 (63%)
 Frame = +2

Query: 1451 LLHKHSPDYSIFKPFGCLAYASNVSPHKSKFDARALKCVFLGYEQGRKGFKLYDLDHKEL 1630
            +L+  SP     K FGCL +A  +S +++K D +A K +FLG + G KG+ + D+  + +
Sbjct: 1    MLYDQSPTLLDLKVFGCLCFAGTLSQNRNKLDPKASKGIFLGIKHGTKGYLVMDISTRNI 60

Query: 1631 LISRDVVFVEDQFPFHSTLPCS 1696
             IS++V+F ED FPFH+ +  S
Sbjct: 61   FISKNVLFYEDVFPFHNKVSAS 82