BLASTX nr result
ID: Rehmannia27_contig00024680
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00024680
(363 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera] 50 1e-07
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera] 50 1e-07
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc... 47 1e-07
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 47 2e-07
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 46 5e-07
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 48 1e-06
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 45 2e-06
gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-... 45 4e-06
emb|CAN66884.1| hypothetical protein VITISV_000961 [Vitis vinifera] 47 4e-06
ref|XP_012453597.1| PREDICTED: uncharacterized protein LOC105775... 45 4e-06
gb|KYP43070.1| hypothetical protein KK1_035513 [Cajanus cajan] 45 4e-06
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 46 6e-06
gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subc... 46 6e-06
dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group] 46 6e-06
>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
Length = 1449
Score = 49.7 bits (117), Expect(2) = 1e-07
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 3 YIRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
YIRPYNKNKL +RS F+GYS++HKGY L
Sbjct: 752 YIRPYNKNKLSYRSSQCVFLGYSSNHKGYMCL 783
Score = 32.7 bits (73), Expect(2) = 1e-07
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSKQMD 174
G++ +TRHVVF E +FPF D
Sbjct: 788 GRLYVTRHVVFHETVFPFQSTPD 810
>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
Length = 1271
Score = 49.7 bits (117), Expect(2) = 1e-07
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3
Query: 3 YIRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
YIRPYNKNKL +RS F+GYS++HKGY L
Sbjct: 561 YIRPYNKNKLSYRSSQCVFLGYSSNHKGYMCL 592
Score = 32.7 bits (73), Expect(2) = 1e-07
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSKQMD 174
G++ +TRHVVF E +FPF D
Sbjct: 597 GRLYVTRHVVFHETVFPFQSTPD 619
>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1016
Score = 46.6 bits (109), Expect(2) = 1e-07
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYNK KL+FRS F+GYSN HKG+K L
Sbjct: 301 LRPYNKRKLEFRSKQCVFLGYSNIHKGFKCL 331
Score = 35.8 bits (81), Expect(2) = 1e-07
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSK 165
G++ I+R VVFDEN+FPFSK
Sbjct: 336 GRVYISRDVVFDENVFPFSK 355
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 47.0 bits (110), Expect(2) = 2e-07
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYNK+KLQFRS F+G+SN HKG+K L
Sbjct: 560 LRPYNKHKLQFRSKRCAFLGFSNMHKGFKCL 590
Score = 34.7 bits (78), Expect(2) = 2e-07
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSK 165
G++ I+R VVFDENIFPFS+
Sbjct: 595 GRVYISRDVVFDENIFPFSE 614
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 45.8 bits (107), Expect(2) = 5e-07
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYN KLQFRS F+GYSN HKG+K L
Sbjct: 605 LRPYNNRKLQFRSKQCVFLGYSNIHKGFKCL 635
Score = 34.7 bits (78), Expect(2) = 5e-07
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSK 165
G++ I+R VVFDENIFPFS+
Sbjct: 640 GRVYISRDVVFDENIFPFSQ 659
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 47.8 bits (112), Expect(2) = 1e-06
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYN++KLQFRS F+GYSN HKG+K L
Sbjct: 690 LRPYNQHKLQFRSTRCVFLGYSNMHKGFKCL 720
Score = 31.2 bits (69), Expect(2) = 1e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFS 162
G+I I+R VVFDE++FPF+
Sbjct: 725 GRIYISRDVVFDEHVFPFA 743
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 45.4 bits (106), Expect(2) = 2e-06
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYN KLQFRS F+GYSN HKG+K L
Sbjct: 681 LRPYNARKLQFRSKQCVFLGYSNLHKGFKCL 711
Score = 32.7 bits (73), Expect(2) = 2e-06
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFS 162
G++ I+R VVFDEN+FPF+
Sbjct: 716 GRVYISRDVVFDENVFPFA 734
>gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548933|gb|ABA91730.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1094
Score = 45.1 bits (105), Expect(2) = 4e-06
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYN +KLQFRS F+G+SN HKG+K L
Sbjct: 371 LRPYNNHKLQFRSKRCVFLGFSNMHKGFKCL 401
Score = 32.3 bits (72), Expect(2) = 4e-06
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSK 165
G++ I+R VVFDE IFPFS+
Sbjct: 406 GRVYISRDVVFDETIFPFSE 425
>emb|CAN66884.1| hypothetical protein VITISV_000961 [Vitis vinifera]
Length = 685
Score = 47.4 bits (111), Expect(2) = 4e-06
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +3
Query: 9 RPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
RP+NK+KLQFRS TF+GYS +HKGYK L
Sbjct: 371 RPFNKHKLQFRSTVCTFMGYSLNHKGYKRL 400
Score = 30.0 bits (66), Expect(2) = 4e-06
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 103 DGKIIITRHVVFDENIFPFSK 165
+GK+ I+R V+FDE FPF++
Sbjct: 403 NGKLYISRDVIFDETTFPFAQ 423
>ref|XP_012453597.1| PREDICTED: uncharacterized protein LOC105775649 [Gossypium
raimondii]
Length = 619
Score = 45.1 bits (105), Expect(2) = 4e-06
Identities = 18/32 (56%), Positives = 26/32 (81%)
Frame = +3
Query: 3 YIRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
Y+RP+ ++KL+FRS TF+GYS+ HKGY+ L
Sbjct: 402 YLRPFQRHKLEFRSQPCTFLGYSSCHKGYQCL 433
Score = 32.3 bits (72), Expect(2) = 4e-06
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 100 PDGKIIITRHVVFDENIFP 156
PDG+III+RHV F+E+ FP
Sbjct: 435 PDGRIIISRHVEFNESRFP 453
>gb|KYP43070.1| hypothetical protein KK1_035513 [Cajanus cajan]
Length = 409
Score = 44.7 bits (104), Expect(2) = 4e-06
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
++PYN++KLQF + F+GYS SHKGYK L
Sbjct: 12 LKPYNQHKLQFHTTKCVFLGYSGSHKGYKCL 42
Score = 32.7 bits (73), Expect(2) = 4e-06
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSKQMDAPPNH 189
G+I I+RHVVF+ IFPF +P +H
Sbjct: 46 GRIFISRHVVFNNIIFPFMMARASPISH 73
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 45.8 bits (107), Expect(2) = 6e-06
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYNK+KL FRS F+GYSN HKG+K L
Sbjct: 652 LRPYNKHKLAFRSKRCVFLGYSNLHKGFKCL 682
Score = 30.8 bits (68), Expect(2) = 6e-06
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSK 165
G++ ++R V FDE+IFPFS+
Sbjct: 687 GRVYVSRDVTFDESIFPFSE 706
>gb|ABF95616.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1241
Score = 45.8 bits (107), Expect(2) = 6e-06
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYNK+KL FRS F+GYSN HKG+K L
Sbjct: 598 LRPYNKHKLAFRSKRCVFLGYSNLHKGFKCL 628
Score = 30.8 bits (68), Expect(2) = 6e-06
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSK 165
G++ ++R V FDE+IFPFS+
Sbjct: 633 GRVYVSRDVTFDESIFPFSE 652
>dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]
Length = 821
Score = 45.8 bits (107), Expect(2) = 6e-06
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3
Query: 6 IRPYNKNKLQFRSCAGTFIGYSNSHKGYKFL 98
+RPYNK+KL FRS F+GYSN HKG+K L
Sbjct: 55 LRPYNKHKLAFRSKRCVFLGYSNLHKGFKCL 85
Score = 30.8 bits (68), Expect(2) = 6e-06
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 106 GKIIITRHVVFDENIFPFSK 165
G++ ++R V FDE+IFPFS+
Sbjct: 90 GRVYVSRDVTFDESIFPFSE 109