BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00024612
         (2053 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   632   0.0  
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   615   0.0  
gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposo...   598   0.0  
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   575   0.0  
gb|KYP34165.1| Copia protein [Cajanus cajan]                          573   0.0  
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   582   0.0  
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   563   0.0  
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo...   591   0.0  
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo...   591   0.0  
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   584   0.0  
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   582   0.0  
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   553   0.0  
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   565   0.0  
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   561   0.0  
gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposo...   546   0.0  
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...   569   0.0  
gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposo...   571   0.0  
gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposo...   543   0.0  
gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposo...   571   0.0  
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo...   569   0.0  

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  632 bits (1630), Expect = 0.0
 Identities = 324/602 (53%), Positives = 426/602 (70%), Gaps = 6/602 (0%)
 Frame = +1

Query: 28   TESLSPILPNSPTAPIEIPPNTHMPGGRITI----DLPIDDIQA-PATVPHHNSETAATT 192
            + S  PIL  S  A I    N +   G I +    D P + I   P T P          
Sbjct: 671  SSSTVPILXES--ASIXSSSNLYALPGTIPLSTNSDEPNESINTRPVTXPQQ-------P 721

Query: 193  HPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLTR 372
            H MVTRSK GIFKP  Y   + +V EP+ F++A+  P+W+EAM  E+ AL+KN TW+L  
Sbjct: 722  HHMVTRSKNGIFKPXVYTVDL-NVEEPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVS 780

Query: 373  MPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRLV 552
            +P+++  + C+W+FK+K+N DGS++RYKARLVA+GY+Q+ G D+ ET+SPVVKP TIR+V
Sbjct: 781  LPTNRTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPTTIRVV 840

Query: 553  LSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLYGLKQ 732
            L++A++ SW IRQLD +NAFLNG+L  ++YM+Q PGF+    Q Q LVCKL K+LYGLKQ
Sbjct: 841  LAIAVSQSWCIRQLDVNNAFLNGELQEEVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQ 900

Query: 733  ASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQVI 912
            A RAW  KL   L  FGF  +K+D SLF R +  + + +L YVDDI++TGSS  EI+++I
Sbjct: 901  APRAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELI 960

Query: 913  QDLNKVFSLKDLGELHYFLGIEIKYTPDGIL-LTQGKYIREILEKAGMKDAKGLNSPMLT 1089
              L  +FSLKDLGEL YFLGIE+K T DG L L+Q KYI+++L+K  M  AK L +PML+
Sbjct: 961  SRLRGLFSLKDLGELSYFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLS 1020

Query: 1090 SPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKRI 1269
               LS   GDPI +   YR +VGALQY TI+RP+I +SVNK+ Q+MQ PL THWKA+KRI
Sbjct: 1021 GLKLSAGMGDPIDNVFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRI 1080

Query: 1270 LRYLAGTLDHGLFFASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSAKKQA 1449
            LRYL GT D G+      ++ L  F D+DWGSDVDDRRSTSG C+FLGK+L+ WS+KKQ 
Sbjct: 1081 LRYLNGTTDLGIVLKPSETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKKQH 1140

Query: 1450 TVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLSVNPVYHSR 1629
            T SRSSTEAEYRS+AS+T +++WL SLL+E+   +    VIW DN+   SLS NPV HSR
Sbjct: 1141 TTSRSSTEAEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLHSR 1200

Query: 1630 TKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNIRCQGSLE 1809
            TKH+ELDL+F+REKV+++ + V HVP  DQ+AD+FTKPLS +FF +LR KL +    SL+
Sbjct: 1201 TKHMELDLYFVREKVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTV---ASLD 1257

Query: 1810 LR 1815
            L+
Sbjct: 1258 LK 1259


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  615 bits (1585), Expect = 0.0
 Identities = 306/619 (49%), Positives = 413/619 (66%), Gaps = 25/619 (4%)
 Frame = +1

Query: 37   LSPILPNSPTAPIE-----------IPPNTHMPGGRITIDLPIDDIQAPATVPHHN---- 171
            LSP +  +PT+PI            +  + H P    T   P   +  P   P  +    
Sbjct: 837  LSPTMLPTPTSPISSARPISEMDNIVSTHPHAPNSADTTLTPAQVVSNPVATPVQHVVSS 896

Query: 172  ----------SETAATTHPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAM 321
                      ++ A  THPM+TR+K+GI KPK + AAI+   EPS+   AL+  EW++AM
Sbjct: 897  IADASVTRTIAKDADNTHPMITRAKSGIVKPKIFIAAIR---EPSSVSAALQQDEWKKAM 953

Query: 322  QREYNALIKNGTWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLD 501
              EY+AL +N TW+L  +P+ ++ I CKW++K K+N DG++ +YKARLVA+G+ Q AG D
Sbjct: 954  VAEYDALQRNNTWSLVPLPAGRQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFD 1013

Query: 502  YTETYSPVVKPATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQ 681
            +TET+SPVVKP+T+R+V ++AL+ +W I+QLD +NAFLNGDL  +++M+Q  GF  +D Q
Sbjct: 1014 FTETFSPVVKPSTVRVVFTIALSRNWAIKQLDVNNAFLNGDLQEEVFMQQPQGF--IDEQ 1071

Query: 682  GQPLVCKLSKSLYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYV 861
               LVC+L K+LYGLKQA RAW  KL   LLSFGFV +K+D SLF R +      +L YV
Sbjct: 1072 NPNLVCRLHKALYGLKQAPRAWFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYV 1131

Query: 862  DDIIITGSSQNEINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDGILLTQGKYIREILE 1041
            DDI++ GS    I  +I  LN  FSLKDLGE+HYFLGI++ +T +G+ L+Q KYIR++L+
Sbjct: 1132 DDILVIGSDTAAITSLIAQLNSEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQ 1191

Query: 1042 KAGMKDAKGLNSPMLTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQ 1221
            K  M   K   +P+ T   L   DGDP++D   YR  VGALQY TI+RP++ +SVNK+ Q
Sbjct: 1192 KTKMVHCKPARTPLPTGLKLRVGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQ 1251

Query: 1222 YMQNPLTTHWKALKRILRYLAGTLDHGLFFASKSSLQLTAFSDSDWGSDVDDRRSTSGSC 1401
            +MQNP   HWK +KRILRYL GTL HGL     S+L L  F D+DW SD+DDRRSTSG C
Sbjct: 1252 FMQNPTEEHWKVVKRILRYLQGTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHC 1311

Query: 1402 IFLGKNLICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTD 1581
            +FLG NLI W +KKQ  VSRSS E EYRS+A +  +I WL SLL+E+ + + KP ++W D
Sbjct: 1312 VFLGPNLISWQSKKQHIVSRSSIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCD 1371

Query: 1582 NLGAKSLSVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFF 1761
            NL    LS NPV H+RTKH+ELDL+F+REKV++K + V+HVP+ DQ+AD+ TK +S   F
Sbjct: 1372 NLSTVLLSANPVLHARTKHIELDLYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQF 1431

Query: 1762 ARLRNKLNIRCQGSLELRG 1818
               R+KL I    +L LRG
Sbjct: 1432 IEFRHKLRIENLSTLSLRG 1450


>gb|KYP64898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1007

 Score =  598 bits (1543), Expect = 0.0
 Identities = 302/563 (53%), Positives = 390/563 (69%), Gaps = 6/563 (1%)
 Frame = +1

Query: 148  PATVPHHNSETAATTHPMVTRSKAGIFKPKTYAAAI-----QSVVEPSNFRQALEVPEWR 312
            P   P  +S      H M TRSKAGIFKPKTYAAA+        +EP+  ++AL  PEW 
Sbjct: 443  PIIEPGVSSSGPQNAHLMTTRSKAGIFKPKTYAAALVKSSYDHTIEPNTVKEALAKPEWL 502

Query: 313  EAMQREYNALIKNGTWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMA 492
            +AM+ EY AL+ N TW+L  +P   + I CKWIFK K N DGS  R+KARLVA+GY Q  
Sbjct: 503  KAMKDEYQALVSNQTWSLVDLPIGYKPIGCKWIFKSKYNPDGSFQRHKARLVAKGYNQKP 562

Query: 493  GLDYTETYSPVVKPATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVV 672
            GLD++ET+SPVVKP T+R+VLSLA+ N W I Q+D +N FL+GDL   +YM Q PGF   
Sbjct: 563  GLDFSETFSPVVKPTTVRIVLSLAITNQWPIHQIDINNVFLHGDLQESVYMSQPPGF--- 619

Query: 673  DAQGQPLVCKLSKSLYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILIL 852
            + Q +  VCKL+K++YGLKQA R+W  KL++ L+  GF  +K+D SLF R SK T +++L
Sbjct: 620  NTQHKDKVCKLNKAIYGLKQAPRSWYCKLSNTLIQMGFHSTKSDTSLFVRFSKTTTLMLL 679

Query: 853  TYVDDIIITGSSQNEINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDG-ILLTQGKYIR 1029
             YVDDIIITG+S+ EI  VI  L+  FSLKDLG LHYFLG+E+  T +G +LLTQ KY+R
Sbjct: 680  IYVDDIIITGNSKEEIRSVISFLHDKFSLKDLGSLHYFLGVEVTTTKEGNLLLTQTKYLR 739

Query: 1030 EILEKAGMKDAKGLNSPMLTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVN 1209
            EIL KA M D+    +PML +  L++ +   + D + YR +VGALQY TI+RPD+ ++VN
Sbjct: 740  EILHKASMSDSTPQPTPMLANLKLTENETTSVPDPSFYRSIVGALQYLTITRPDVSFAVN 799

Query: 1210 KISQYMQNPLTTHWKALKRILRYLAGTLDHGLFFASKSSLQLTAFSDSDWGSDVDDRRST 1389
            K+ QYM  P   HWKA+KRILRYL GT+ HGL       L L  F DSDWG+D DDR+ST
Sbjct: 800  KVCQYMHCPQEHHWKAVKRILRYLQGTIHHGLLIQKNKQLNLAGFCDSDWGNDKDDRKST 859

Query: 1390 SGSCIFLGKNLICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSV 1569
            SG C++LG NLI WS++KQ +VSRS+TEAEYRSIA V  DI+W+ SLL+E+ +    P  
Sbjct: 860  SGYCVYLGSNLISWSSRKQKSVSRSTTEAEYRSIADVAADIIWIQSLLSELRVPKSLPR- 918

Query: 1570 IWTDNLGAKSLSVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLS 1749
            I+ DNL A  ++ NPV HS+TKH ELDLHF+R+KV Q  + V H+PA  Q+AD  TKPL+
Sbjct: 919  IYCDNLSAVLITANPVLHSKTKHFELDLHFVRDKVKQNEVKVIHLPAKYQVADTLTKPLA 978

Query: 1750 GQFFARLRNKLNIRCQGSLELRG 1818
             Q F   RNKL +    ++ LRG
Sbjct: 979  KQHFHHFRNKLMVTTLDTMSLRG 1001


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  575 bits (1483), Expect = 0.0
 Identities = 286/534 (53%), Positives = 385/534 (72%), Gaps = 4/534 (0%)
 Frame = +1

Query: 199  MVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLTRMP 378
            M TRSK+GI KPK Y + + +  EP N +QAL+ P+W EAM++EY+AL+KN TWTL ++P
Sbjct: 1    MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLP 59

Query: 379  SDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRLVLS 558
             D+  I CKW+F+IK+N+DGS+ RYKARLVA+G+ Q  G D+ ET+SP++KP TIRL+L+
Sbjct: 60   PDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILT 119

Query: 559  LALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLYGLKQAS 738
            LA++N W I QLD +NAFLNG L+  +YM+Q PGFEV D+    LVCKL+K+LYGLKQA 
Sbjct: 120  LAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVPDS---TLVCKLNKALYGLKQAP 176

Query: 739  RAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQVIQD 918
            R W  +L   LL FGF  SK D SLF    +   + +L YVDDIIITG+S     Q+I  
Sbjct: 177  RQWFERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQ 236

Query: 919  LNKVFSLKDLGELHYFLGIEIKYTPDG-ILLTQGKYIREILEKAGMKDAKGLNSPMLTSP 1095
            LN +FSLK LG+L YFLGIE+++  +G +LLTQ KYIR++L++  M +A  ++SPM++S 
Sbjct: 237  LNSIFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSC 296

Query: 1096 TLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKRILR 1275
             LSK   D + D T YR +VGALQYATI+RP++ ++VNK+ Q+M +PL +HW A+KRILR
Sbjct: 297  KLSKHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILR 356

Query: 1276 YLAGTLDHGLFFAS---KSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSAKKQ 1446
            YL GT+ +GL            L A+ D+DW +D DDRRSTSG+ IFLG NLI W ++KQ
Sbjct: 357  YLKGTMFYGLHLQPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWSRKQ 416

Query: 1447 ATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLSVNPVYHS 1626
              V+RSSTEAEYRS+A  T +++W+ +LL E+ +    P+ I+ DN    SL+ NPV HS
Sbjct: 417  PVVARSSTEAEYRSLAQATSEVLWIQTLLHELRVPFSTPT-IYCDNQSTVSLAHNPVLHS 475

Query: 1627 RTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNI 1788
            RTKH+E++L F+REKVL   ++VQH+PA DQ AD  TKPLS   F  LR+KL +
Sbjct: 476  RTKHMEINLFFVREKVLANQLTVQHIPASDQWADALTKPLSSTRFLILRDKLKV 529


>gb|KYP34165.1| Copia protein [Cajanus cajan]
          Length = 542

 Score =  573 bits (1476), Expect = 0.0
 Identities = 293/543 (53%), Positives = 385/543 (70%), Gaps = 3/543 (0%)
 Frame = +1

Query: 199  MVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLTRMP 378
            MVTR+KAGIFKPK Y A      EP+N  QALE  +W++AMQ EY+AL+KN TW L  +P
Sbjct: 1    MVTRAKAGIFKPKVYLAT----TEPTNVAQALEHKQWKQAMQAEYDALLKNCTWDLVSLP 56

Query: 379  SDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRLVLS 558
             D++ I+CKWIFK K + DGSI R+KARLVARG+ Q  GLDYT+T+SPVV+P +IR+VL+
Sbjct: 57   PDRKAITCKWIFKNKYSQDGSILRHKARLVARGFNQQPGLDYTDTFSPVVRPVSIRVVLA 116

Query: 559  LALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQP-LVCKLSKSLYGLKQA 735
            +A++  W I Q+D DNAFLNGDL  +IYM Q  GF     QG P  VCKL K++YGLKQA
Sbjct: 117  IAVSKGWPIHQIDVDNAFLNGDLKEEIYMLQPQGFH----QGSPNTVCKLRKAIYGLKQA 172

Query: 736  SRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQVIQ 915
             RAW  KLT  L   GF+ +K+DNSLF   S+ T I IL YVDD+IIT +S   I  +IQ
Sbjct: 173  PRAWFQKLTLTLFRLGFIQAKSDNSLFISTSRTTSIYILVYVDDVIITSNSATAIRGLIQ 232

Query: 916  DLNKVFSLKDLGELHYFLGIEIKY-TPDGILLTQGKYIREILEKAGMKDAKGLNSPMLTS 1092
             L++ F LKDLG LH+FLGIE+      G+ L+Q +Y+ +IL++  M +A+ + +PM  +
Sbjct: 233  ALHQYFPLKDLGRLHHFLGIEVHSDNAGGVHLSQTRYVTDILDRLNMSNARPVKTPMAPA 292

Query: 1093 PTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKRIL 1272
              L+    +  +D + YR +VGALQY TI+RPDI Y+VNK+ Q+M NPL  HWKA KR+L
Sbjct: 293  SKLTNDGTEACQDPSQYRSIVGALQYLTITRPDIAYTVNKLCQFMHNPLDVHWKATKRLL 352

Query: 1273 RYLAGTLDHGLFFASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSAKKQAT 1452
            RYL GTL HGL +   +  ++ A+ DSDW SD +D RSTSG+C++LG N++ W AKKQ  
Sbjct: 353  RYLKGTLHHGLHYKKFTDTEIYAYCDSDWASDQEDLRSTSGNCVYLGSNIVSWMAKKQKV 412

Query: 1453 VSRSSTEAEYRSIASVTCDIMWLHSLLTEIG-INIPKPSVIWTDNLGAKSLSVNPVYHSR 1629
            VSRSSTEAE+RS+AS+  +I ++ +LL+E+G IN  +P +IW DN GA  LS+NPV H+R
Sbjct: 413  VSRSSTEAEFRSMASLVAEIQYVQNLLSELGHINKNQP-LIWCDNQGAVLLSLNPVLHTR 471

Query: 1630 TKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNIRCQGSLE 1809
            TKH ELDL FIRE+V Q  I V+H+PA  Q+AD+ TK  S   F  LR+KL +  Q +L 
Sbjct: 472  TKHFELDLWFIRERVAQGKIVVKHIPARLQVADLLTKAPSTAIFLDLRDKLVVDRQSTLS 531

Query: 1810 LRG 1818
            LRG
Sbjct: 532  LRG 534


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  582 bits (1501), Expect = 0.0
 Identities = 300/602 (49%), Positives = 399/602 (66%), Gaps = 12/602 (1%)
 Frame = +1

Query: 19   PQSTESLSPILPNSPTAPIEI-----PPNTHMPGGRITIDLPIDDIQAPATVP---HHNS 174
            P  T +     PN PT    +      PNT       T+ +P      P++ P    HN 
Sbjct: 475  PTPTHATRLTSPNPPTTSPSLISDSYSPNTAAHTSPSTLSIPTSSNLEPSSSPIIHPHN- 533

Query: 175  ETAATTHPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNG 354
                  HPM TR+K GI KP+     + + VEP   +QAL  P W  AMQ EYNAL+ N 
Sbjct: 534  -----VHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNN 588

Query: 355  TWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKP 534
            TW+L  +P  +  I CKW+F++K+N +GS+ +YKARLVA+G+ Q  G DY ET+SPV+KP
Sbjct: 589  TWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKP 648

Query: 535  ATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKS 714
             T+RL+L+LAL + W I+QLD +NAFLNG L+ ++YM+Q PGFE  D   + LVCKL K+
Sbjct: 649  VTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGFEASD---KNLVCKLHKA 705

Query: 715  LYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQN 894
            +YGLKQA RAW  KL S LL   F  SK D SLF        I IL YVDDIIITG++ +
Sbjct: 706  IYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGNNSS 765

Query: 895  EINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDG-ILLTQGKYIREILEKAGMKDAKGL 1071
             ++ ++  L+ +FSLKDLG+L +FLGIE+K  PDG ++LTQ KYIR++L +  M+ +K +
Sbjct: 766  ILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGSKPI 825

Query: 1072 NSPMLTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHW 1251
            +SPM++   LSK   +   D + YR +VGALQYATI+RP+I +SVNK+ Q+M +PLT HW
Sbjct: 826  SSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSHPLTHHW 885

Query: 1252 KALKRILRYLAGTLDHGLFF---ASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNL 1422
             A+KRILRYL GT   GL     +S SSL + A+ D+DW SD DDRRSTSG+ IFLG NL
Sbjct: 886  AAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASIFLGPNL 945

Query: 1423 ICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSL 1602
            + W +KKQ  V+RSSTEAEYRS+A  T ++ W+ +LL+E+ +    P +I+ DNL   +L
Sbjct: 946  VSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKVTHSTP-IIFCDNLSTVAL 1004

Query: 1603 SVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKL 1782
            + NPV H+RTKH+ELDL F+REKV  K + V HVPAIDQ AD+ TK LS   F  LR+KL
Sbjct: 1005 AHNPVLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFCELRSKL 1064

Query: 1783 NI 1788
             +
Sbjct: 1065 QV 1066


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  563 bits (1451), Expect = 0.0
 Identities = 284/534 (53%), Positives = 373/534 (69%), Gaps = 4/534 (0%)
 Frame = +1

Query: 199  MVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLTRMP 378
            M TR+KAGI KP+     + + +EP N +QAL    W  AM++EYNAL+ NGTWTL  +P
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 379  SDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRLVLS 558
             +K  I CKW+F+IK+N+DG++ +YKARLVA+G+ Q  G DY ET+SPVVKP TIRL+L+
Sbjct: 61   PNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 559  LALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLYGLKQAS 738
            LAL + W+I+QLD +NAFLNG+L  ++YM Q PGFE  D   + LVCKL K++YGLKQA 
Sbjct: 121  LALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFESSD---KTLVCKLHKAIYGLKQAP 177

Query: 739  RAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQVIQD 918
            RAW  KL + L    F +SK D SLF        I IL YVDDIIITG++ + +  +I  
Sbjct: 178  RAWFDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQNIIAQ 237

Query: 919  LNKVFSLKDLGELHYFLGIEIKYTPDGIL-LTQGKYIREILEKAGMKDAKGLNSPMLTSP 1095
            LN  FSLKDLG L +FLGIE+K   DG L LTQ KYIR++L +  M+++  ++SPM++  
Sbjct: 238  LNSAFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMVSGC 297

Query: 1096 TLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKRILR 1275
             LS+   +   D T YR +VGALQYATI+RP+I +SVNK+ Q+M NPL  HW A+KRILR
Sbjct: 298  KLSRTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAVKRILR 357

Query: 1276 YLAGTLDHGLFF---ASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSAKKQ 1446
            YL GT+  GL      S S L + A+ D+DW SD DDRRSTSG+ IF+G NLI W +KKQ
Sbjct: 358  YLKGTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISWWSKKQ 417

Query: 1447 ATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLSVNPVYHS 1626
              V+RSS EAEYRS+A  T +++W+ +LL+E+ ++   P V++ DN+   +L+ NPV H+
Sbjct: 418  TVVARSSAEAEYRSLALATAEVLWIQTLLSELHVSHHTP-VVYCDNMSTVALAHNPVLHA 476

Query: 1627 RTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNI 1788
            RTKH+ELDL F+REKV    + V HVPAIDQ ADI TK LS   F  LR KL +
Sbjct: 477  RTKHMELDLFFVREKVAANSLHVVHVPAIDQYADILTKALSPSRFCELRTKLKL 530


>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  591 bits (1524), Expect = 0.0
 Identities = 304/603 (50%), Positives = 408/603 (67%), Gaps = 7/603 (1%)
 Frame = +1

Query: 1    SNSSQYPQSTESLSPIL--PNSPTAP-IEIPPNTHMPGGRITIDLPIDDIQAPATVPHHN 171
            S SS  P +   ++ ++  P S T+P +  PP   +P  R           A   + HHN
Sbjct: 839  SPSSSTPLTISQINSLISQPISTTSPSVPTPPADPVPAIR----------PASQNISHHN 888

Query: 172  SETAATTHPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKN 351
            +      HPM+TR+K G  KPK + AA+    EP + + AL  P W +AMQ EY AL+ N
Sbjct: 889  A------HPMITRAKTGNLKPKVFVAAL----EPKSVKSALNDPAWLQAMQAEYKALMDN 938

Query: 352  GTWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVK 531
             TWTL  +P  ++ I CKWIF++K+N DG++ ++KARLVA+G+ Q AG D+TET+SPV+K
Sbjct: 939  QTWTLVPLPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIK 998

Query: 532  PATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSK 711
            P TIR++L+LA+   W+++Q+D +NAFLNG L  ++YM Q  GFE  D   + LVCKL K
Sbjct: 999  PITIRIILTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGFEASD---KSLVCKLHK 1055

Query: 712  SLYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQ 891
            SLYGLKQA RAW  +LT  LL  GFV SK D SL      G    +L YVDDI+ITGS+ 
Sbjct: 1056 SLYGLKQAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGSAP 1115

Query: 892  NEINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDG-ILLTQGKYIREILEKAGMKDAKG 1068
            + I+ +I  LN  F+LK LG++ YFLGIE+ + P G +LL Q KYIR++L KA M+D+  
Sbjct: 1116 HLISDLIHKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYIRDLLCKAHMEDSAP 1175

Query: 1069 LNSPMLTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTH 1248
            + SPM++S  LSK+  D + D T YR +VGALQYAT++RPDI +SVNK+ Q+M +PL +H
Sbjct: 1176 IGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSVNKVCQFMAHPLESH 1235

Query: 1249 WKALKRILRYLAGTLDHGLFFA---SKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKN 1419
            WKA+KRILRYL GTL HGL      +     L A+SD+DW +D DDRRSTSGSCI+ G N
Sbjct: 1236 WKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPN 1295

Query: 1420 LICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKS 1599
            LI W +KKQ  V+RSSTEAEYRS+A+ T D++W+ SLL E+ +    P+++  DNL A S
Sbjct: 1296 LISWGSKKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CDNLSAVS 1354

Query: 1600 LSVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNK 1779
            LS NP+ HS+TKH+ELD+HF+REKVL K +++ HVPA DQ+AD  TKPLS      +R K
Sbjct: 1355 LSHNPILHSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLTKPLSPSQHTAIRTK 1414

Query: 1780 LNI 1788
            L +
Sbjct: 1415 LKV 1417


>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1417

 Score =  591 bits (1524), Expect = 0.0
 Identities = 304/603 (50%), Positives = 408/603 (67%), Gaps = 7/603 (1%)
 Frame = +1

Query: 1    SNSSQYPQSTESLSPIL--PNSPTAP-IEIPPNTHMPGGRITIDLPIDDIQAPATVPHHN 171
            S SS  P +   ++ ++  P S T+P +  PP   +P  R           A   + HHN
Sbjct: 839  SPSSSTPLTISQINSLISQPISTTSPSVPTPPADPVPAIR----------PASQNISHHN 888

Query: 172  SETAATTHPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKN 351
            +      HPM+TR+K G  KPK + AA+    EP + + AL  P W +AMQ EY AL+ N
Sbjct: 889  A------HPMITRAKTGNLKPKVFVAAL----EPKSVKSALNDPAWLQAMQAEYKALMDN 938

Query: 352  GTWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVK 531
             TWTL  +P  ++ I CKWIF++K+N DG++ ++KARLVA+G+ Q AG D+TET+SPV+K
Sbjct: 939  QTWTLVPLPQHRKAIGCKWIFRVKENPDGTVNKFKARLVAKGFLQTAGFDFTETFSPVIK 998

Query: 532  PATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSK 711
            P TIR++L+LA+   W+++Q+D +NAFLNG L  ++YM Q  GFE  D   + LVCKL K
Sbjct: 999  PITIRIILTLAVTFKWSVQQIDVNNAFLNGILQEEVYMTQPAGFEASD---KSLVCKLHK 1055

Query: 712  SLYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQ 891
            SLYGLKQA RAW  +LT  LL  GFV SK D SL      G    +L YVDDI+ITGS+ 
Sbjct: 1056 SLYGLKQAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGSAP 1115

Query: 892  NEINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDG-ILLTQGKYIREILEKAGMKDAKG 1068
            + I+ +I  LN  F+LK LG++ YFLGIE+ + P G +LL Q KYIR++L KA M+D+  
Sbjct: 1116 HLISDLIHKLNMKFALKQLGQIDYFLGIEVHHLPSGALLLNQTKYIRDLLCKAHMEDSAP 1175

Query: 1069 LNSPMLTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTH 1248
            + SPM++S  LSK+  D + D T YR +VGALQYAT++RPDI +SVNK+ Q+M +PL +H
Sbjct: 1176 IGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQYATLTRPDIAFSVNKVCQFMAHPLESH 1235

Query: 1249 WKALKRILRYLAGTLDHGLFFA---SKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKN 1419
            WKA+KRILRYL GTL HGL      +     L A+SD+DW +D DDRRSTSGSCI+ G N
Sbjct: 1236 WKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPN 1295

Query: 1420 LICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKS 1599
            LI W +KKQ  V+RSSTEAEYRS+A+ T D++W+ SLL E+ +    P+++  DNL A S
Sbjct: 1296 LISWGSKKQQLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLL-CDNLSAVS 1354

Query: 1600 LSVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNK 1779
            LS NP+ HS+TKH+ELD+HF+REKVL K +++ HVPA DQ+AD  TKPLS      +R K
Sbjct: 1355 LSHNPILHSKTKHIELDIHFVREKVLSKQLNILHVPAQDQLADPLTKPLSPSQHTAIRTK 1414

Query: 1780 LNI 1788
            L +
Sbjct: 1415 LKV 1417


>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  584 bits (1506), Expect = 0.0
 Identities = 305/603 (50%), Positives = 394/603 (65%), Gaps = 11/603 (1%)
 Frame = +1

Query: 13   QYPQSTESLSPILPNSPTAPIEIPPNTHMP------GGRITIDLPIDDIQAPATVPHHNS 174
            Q P +  +L+P    +P  P   P +T  P          T+         P + P  + 
Sbjct: 824  QTPHTPNNLTPNNQPTPHTPTTFPSHTSSPYISASASPTPTLPSTASSTIDPNSTPTSSP 883

Query: 175  ETAATTHPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNG 354
                 TH M+TRSK G  KP  +     +  EP+  +QAL    W EAMQ+EY AL  N 
Sbjct: 884  SPTTNTHHMLTRSKTGHLKPPLFPTINLTTTEPTTVQQALSSIHWTEAMQQEYQALQANK 943

Query: 355  TWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKP 534
            TW+L  +P  KR I CKWIF+IK+N DG+I +YKARLVA+G+ Q  G DY++TYSPVVKP
Sbjct: 944  TWSLVPLPPHKRAIGCKWIFRIKENPDGTINKYKARLVAKGFNQKYGQDYSDTYSPVVKP 1003

Query: 535  ATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQ-PLVCKLSK 711
             T+R VL++AL + W + QLD +NAFLNG L  D+YM+Q  GF     QG+  LVCKL K
Sbjct: 1004 ITVRTVLTIALTSKWPLIQLDVNNAFLNGQLHEDVYMQQPQGF----IQGESTLVCKLHK 1059

Query: 712  SLYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQ 891
            ++YGLKQA RAW   LT+ L+SFGF  SK D SL      G  +LIL YVDDIIITGSS 
Sbjct: 1060 AIYGLKQAPRAWYESLTNTLISFGFQQSKCDPSLLIFNKHGCCLLILIYVDDIIITGSSN 1119

Query: 892  NEINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDGIL-LTQGKYIREILEKAGMKDAKG 1068
              IN ++  LN  FSLK LG L YFLGIE K TP G L L+Q KYIR+IL +AGM+D KG
Sbjct: 1120 TAINLIVNKLNATFSLKQLGTLEYFLGIECKLTPSGALHLSQAKYIRDILHRAGMEDCKG 1179

Query: 1069 LNSPMLTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTH 1248
            +++P+  +  LSK   DP  + T YR +VGALQYATI+RP++ YSV+K+ Q+   PL +H
Sbjct: 1180 ISTPLPANLKLSKTGADPFDNPTLYRSIVGALQYATITRPELGYSVSKVCQFFAQPLVSH 1239

Query: 1249 WKALKRILRYLAGTLDHGLFF---ASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKN 1419
            W A+KRILRYL G++DHGL      + + L + AF D+DW SD+DDRRSTSG+CIF G N
Sbjct: 1240 WSAVKRILRYLKGSIDHGLTLLPATTSAPLSINAFCDADWASDIDDRRSTSGACIFFGPN 1299

Query: 1420 LICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKS 1599
            L+ W +KKQ  V++SS EAEYRS+A    +++WL SLL E+ + IP P VI+ DN  A +
Sbjct: 1300 LVSWWSKKQTLVAKSSAEAEYRSLAHAASEVLWLQSLLHELKVPIP-PPVIYCDNQSAVA 1358

Query: 1600 LSVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNK 1779
            +S NPV HSRTKH+ELD+ F+REKVL K + V ++PA  Q+ADI TK LS   F   R+K
Sbjct: 1359 ISHNPVLHSRTKHMELDIFFVREKVLNKSLVVSYIPAQLQVADILTKSLSKHLFYNFRSK 1418

Query: 1780 LNI 1788
            L +
Sbjct: 1419 LRV 1421


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  582 bits (1501), Expect = 0.0
 Identities = 300/602 (49%), Positives = 399/602 (66%), Gaps = 12/602 (1%)
 Frame = +1

Query: 19   PQSTESLSPILPNSPTAPIEI-----PPNTHMPGGRITIDLPIDDIQAPATVP---HHNS 174
            P  T +     PN PT    +      PNT       T+ +P      P++ P    HN 
Sbjct: 810  PTPTHATRLTSPNPPTTSPSLISDSYSPNTAAHTSPSTLSIPTSSNLEPSSSPIIHPHN- 868

Query: 175  ETAATTHPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNG 354
                  HPM TR+K GI KP+     + + VEP   +QAL  P W  AMQ EYNAL+ N 
Sbjct: 869  -----VHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHNN 923

Query: 355  TWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKP 534
            TW+L  +P  +  I CKW+F++K+N +GS+ +YKARLVA+G+ Q  G DY ET+SPV+KP
Sbjct: 924  TWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIKP 983

Query: 535  ATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKS 714
             T+RL+L+LAL + W I+QLD +NAFLNG L+ ++YM+Q PGFE  D   + LVCKL K+
Sbjct: 984  VTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQPPGFEASD---KNLVCKLHKA 1040

Query: 715  LYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQN 894
            +YGLKQA RAW  KL S LL   F  SK D SLF        I IL YVDDIIITG++ +
Sbjct: 1041 IYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDIIITGNNSS 1100

Query: 895  EINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDG-ILLTQGKYIREILEKAGMKDAKGL 1071
             ++ ++  L+ +FSLKDLG+L +FLGIE+K  PDG ++LTQ KYIR++L +  M+ +K +
Sbjct: 1101 ILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRTDMEGSKPI 1160

Query: 1072 NSPMLTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHW 1251
            +SPM++   LSK   +   D + YR +VGALQYATI+RP+I +SVNK+ Q+M +PLT HW
Sbjct: 1161 SSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFMSHPLTHHW 1220

Query: 1252 KALKRILRYLAGTLDHGLFF---ASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNL 1422
             A+KRILRYL GT   GL     +S SSL + A+ D+DW SD DDRRSTSG+ IFLG NL
Sbjct: 1221 AAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGASIFLGPNL 1280

Query: 1423 ICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSL 1602
            + W +KKQ  V+RSSTEAEYRS+A  T ++ W+ +LL+E+ +    P +I+ DNL   +L
Sbjct: 1281 VSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKVTHSTP-IIFCDNLSTVAL 1339

Query: 1603 SVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKL 1782
            + NPV H+RTKH+ELDL F+REKV  K + V HVPAIDQ AD+ TK LS   F  LR+KL
Sbjct: 1340 AHNPVLHARTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPTRFCELRSKL 1399

Query: 1783 NI 1788
             +
Sbjct: 1400 QV 1401


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  553 bits (1424), Expect = 0.0
 Identities = 278/535 (51%), Positives = 374/535 (69%), Gaps = 4/535 (0%)
 Frame = +1

Query: 199  MVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLTRMP 378
            M TRSK+G   P+ + +   +  EP   +QAL  P W  AMQ+EYNAL+ N TW L  +P
Sbjct: 1    MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 379  SDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRLVLS 558
            SD++ + CKW+F++K+NADGSI + KARLVA+G+ Q+ G D+ ET+SPV+KP TIR++L+
Sbjct: 61   SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 559  LALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLYGLKQAS 738
            LAL N+W + QLD +NAFLNG L+  IYM Q PGFE  D   + LVCKL+K+LYGLKQA 
Sbjct: 121  LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGD---KSLVCKLNKALYGLKQAP 177

Query: 739  RAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQVIQD 918
            R W +KL   L  FGF  SK D SLF    +   I IL YVDDIIITGSS   I Q+   
Sbjct: 178  RQWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQ 237

Query: 919  LNKVFSLKDLGELHYFLGIEIKYTPD-GILLTQGKYIREILEKAGMKDAKGLNSPMLTSP 1095
            L+ +FSLK LG L YFLGIE+K+ PD  ++LTQ KYIR++L K  + +A G  SPM ++ 
Sbjct: 238  LDSIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNC 297

Query: 1096 TLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKRILR 1275
             LS+   D   D T +R +VGALQYAT++RP+I ++VNK+ Q+M  PL +HW A+KRIL+
Sbjct: 298  KLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILK 357

Query: 1276 YLAGTLDHGLFF---ASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSAKKQ 1446
            YL GTL +GL     A    + LTAF D+DW SD+DDRRSTSGS IF G NLI W ++KQ
Sbjct: 358  YLKGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQ 417

Query: 1447 ATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLSVNPVYHS 1626
              ++RSSTEAEYRSIA  + ++ W+ +LL E+ +    P+++  DN  A +++ NPV+HS
Sbjct: 418  RVIARSSTEAEYRSIAQASAELTWIQALLQELKVPFSTPTLL-CDNQSAVAIAHNPVFHS 476

Query: 1627 RTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNIR 1791
            +TKH+E+D+ F+R+KVL K + V H+PA+DQ AD+ TKPLS   F  L +KL ++
Sbjct: 477  KTKHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLWDKLKVQ 531


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  565 bits (1455), Expect = 0.0
 Identities = 296/627 (47%), Positives = 400/627 (63%), Gaps = 35/627 (5%)
 Frame = +1

Query: 19   PQSTESLSPILPNSPTAPIEIPPNTHMPGGRITIDLPIDDIQAPATVPHHNSETAATT-- 192
            P+S  S +       + P  I      PGG  +   P D + + A    H +  +AT+  
Sbjct: 276  PRSAPSATCPSQTQDSVPASITHPHDEPGGDTSSISPADVVSSAAADGMHATHGSATSSG 335

Query: 193  ----------------HPMVTRSKAGIFKPKTYA------AAIQSVVEPSNFRQALEVPE 306
                               VTRS+ G+ +PK Y         +    EPS+ ++AL    
Sbjct: 336  GNVSSPHTFDAAQQIQQRPVTRSQHGVHRPKKYTDGTVRYGCLTETGEPSSLQEALSSAN 395

Query: 307  WREAMQREYNALIKNGTWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQ 486
            W++AM +E++AL+ N TW L      K +I  KW++KIKK ADG+I RYKARLVA+G+ Q
Sbjct: 396  WKQAMDKEFSALLHNKTWHLVPPVKGKNIIDSKWVYKIKKKADGTIDRYKARLVAKGFKQ 455

Query: 487  MAGLDYTETYSPVVKPATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFE 666
              G+DY +T+SPVVK ATIRLVLS+A++  W++RQLD  NAFL+G LD ++YM Q PGFE
Sbjct: 456  RYGIDYEDTFSPVVKAATIRLVLSIAMSQGWSLRQLDVQNAFLHGYLDEEVYMRQPPGFE 515

Query: 667  VVDAQGQPLVCKLSKSLYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQIL 846
              DA+    +CKL K+LYGLKQA RAW S+L+  L   GF  SKAD SLFF      ++ 
Sbjct: 516  --DARQPHFLCKLDKALYGLKQAPRAWYSRLSKKLQELGFSSSKADTSLFFYNKGHHKMF 573

Query: 847  ILTYVDDIIITGSSQNEINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDGILLTQGKYI 1026
            +L YVDDII+  SS   +N +++DL K F+LKDLG+LHYFLGIE+K TP  +LL+Q +Y 
Sbjct: 574  VLVYVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLLSQERYT 633

Query: 1027 REILEKAGMKDAKGLNSPMLTSPTLSKFDGDPI--KDGTSYRQLVGALQYATISRPDICY 1200
             E+LE+  M   K +++P+ T+  LS   GD +   D T YR +VGALQY T++RPDI Y
Sbjct: 634  TELLERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLTRPDISY 693

Query: 1201 SVNKISQYMQNPLTTHWKALKRILRYLAGTLDHGLFFASKSSLQLTAFSDSDWGSDVDDR 1380
            SVNK+ Q++Q P T HW A+KRILRYL GTLD GL     SS  ++AFSD+DW   VDDR
Sbjct: 694  SVNKVCQFLQTPTTAHWSAVKRILRYLKGTLDLGLKIVKSSSNLVSAFSDADWAGSVDDR 753

Query: 1381 RSTSGSC---------IFLGKNLICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLL 1533
            RST G           +F G NLI WSA+KQATVSRSSTEAEY+++A+   +I+W+  LL
Sbjct: 754  RSTGGFADRRSTGGFAVFFGDNLISWSARKQATVSRSSTEAEYKALANAAAEIIWVRKLL 813

Query: 1534 TEIGINIPKPSVIWTDNLGAKSLSVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAI 1713
            TE+GI  P  + +W DNLGA  ++ NPV+H+RTKH+E+D HF+RE+V QK++ +  V + 
Sbjct: 814  TELGILHPNAARLWCDNLGATYMTANPVFHARTKHIEVDYHFVREQVAQKLLDIHFVSSQ 873

Query: 1714 DQIADIFTKPLSGQFFARLRNKLNIRC 1794
            DQ+AD FTKP+S Q     R+ LN+ C
Sbjct: 874  DQVADGFTKPISLQQLIGFRHNLNLVC 900


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  561 bits (1445), Expect = 0.0
 Identities = 287/610 (47%), Positives = 395/610 (64%), Gaps = 15/610 (2%)
 Frame = +1

Query: 4    NSSQYPQSTESLSPILPNSPTAPIEIPPNTHMPGGRITIDLPIDDIQAPATVPHHNSETA 183
            N    P   +  + +  +S  API   P+T  P G        D + +P+      SE  
Sbjct: 325  NDDGSPVLRDVSAELQSDSDAAPISSSPSTSAPSGGAVHSTHADQVTSPSPAASEQSEQE 384

Query: 184  ATTHPM------VTRSKAGIFKPKTYA------AAIQSVVEPSNFRQALEVPEWREAMQR 327
              T         VTR + GI KPK Y         + +  EP N R+A+    WR AM++
Sbjct: 385  QQTTQASDQTRPVTRLQKGISKPKRYTDGTVRYGCLTTTGEPENLREAMANSNWRLAMEQ 444

Query: 328  EYNALIKNGTWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYT 507
            EY+A + N TW L      K +I CKW++KIK+ ADGSI RYKARLVA+G+ Q  G+DY 
Sbjct: 445  EYSAFMSNKTWHLVPPTQGKNIIDCKWMYKIKRKADGSIDRYKARLVAKGFKQRYGIDYE 504

Query: 508  ETYSPVVKPATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQ 687
            +T+S VVK ATIRL+LS+A++  W++RQLD  NAFL+G L+ ++YM Q PGFE    +GQ
Sbjct: 505  DTFSLVVKAATIRLILSIAVSKGWSLRQLDVQNAFLHGYLEEEVYMRQPPGFE---NKGQ 561

Query: 688  P-LVCKLSKSLYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVD 864
            P  +CKL K+LYGLKQA RAW S+L++ L   GF+ SKAD SLFF    G  I IL YVD
Sbjct: 562  PNYLCKLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCTIFILVYVD 621

Query: 865  DIIITGSSQNEINQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDGILLTQGKYIREILEK 1044
            DII+  SS   +  +++DL K F+LKDLG+LHYFLGIE+K    G++L+Q  Y  +IL++
Sbjct: 622  DIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKR 681

Query: 1045 AGMKDAKGLNSPMLTSPTLSKFDGDPI--KDGTSYRQLVGALQYATISRPDICYSVNKIS 1218
            AGM   K  ++P+ T+  LS  DGD +   D + YR +VGALQY T++R D+ + VNK+ 
Sbjct: 682  AGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVC 741

Query: 1219 QYMQNPLTTHWKALKRILRYLAGTLDHGLFFASKSSLQLTAFSDSDWGSDVDDRRSTSGS 1398
            Q++ +P T HW A+KRILRY+ GT++ GL F    S+ ++AFSD+DW    DDRRST G 
Sbjct: 742  QFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRSTGGF 801

Query: 1399 CIFLGKNLICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWT 1578
             +FLG NLI WSA+KQATVSRSSTEAEY+++A+ T ++ W+  +L E+ I  P  + +W 
Sbjct: 802  AVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVAQLWC 861

Query: 1579 DNLGAKSLSVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQF 1758
            DNLGA  LS NPV+H+RTKH+E+D HF+RE+V +K++ +Q +   DQ+AD FTK L    
Sbjct: 862  DNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLPAPS 921

Query: 1759 FARLRNKLNI 1788
             A+ R+ LN+
Sbjct: 922  LAQYRHNLNL 931


>gb|KYP50571.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 553

 Score =  546 bits (1407), Expect = 0.0
 Identities = 280/550 (50%), Positives = 376/550 (68%), Gaps = 11/550 (2%)
 Frame = +1

Query: 199  MVTRSKAGIFKPKTYAAAIQS------VVEPSNFRQALEVPEWREAMQREYNALIKNGTW 360
            M+TRSK GIFKPKTY     +        EP   ++AL +P W++AM +EYNALI N TW
Sbjct: 1    MITRSKHGIFKPKTYEVTTPTQKLHDPFKEPKTIKEALAIPNWKQAMDQEYNALIHNKTW 60

Query: 361  TLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPAT 540
             LT +P    ++ CKWIFK+K NADG+I R+KARL+A+G+ Q +GLD+TET+ PVVKP T
Sbjct: 61   VLTHLPVGANLVGCKWIFKVKTNADGTINRHKARLMAKGFNQQSGLDFTETFIPVVKPIT 120

Query: 541  IRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLY 720
            IR VL++AL+ +W++RQLD  NAFLNGDL   IYM Q PGF   D     +VCKL K LY
Sbjct: 121  IRTVLTIALSLNWSLRQLDIANAFLNGDLQETIYMAQPPGFTNGDKN---MVCKLQKFLY 177

Query: 721  GLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEI 900
            GLKQA RAW  KL   L   GF  +K+D SLFFR +    ILIL YVDD+II+GSSQ EI
Sbjct: 178  GLKQAPRAWFQKLHDTLSVLGFNYAKSDCSLFFRITTSNIILILVYVDDLIISGSSQTEI 237

Query: 901  NQVIQDLNKVFSLKDLGELHYFLGIEIKYTPDGIL-LTQGKYIREILEKAGMKDAKGLNS 1077
            + V+  L   F  +DLG  +YF GI++    +  L LTQ KYI ++L++A M  AK + +
Sbjct: 238  DSVVTHLQTRFPARDLGFPNYFPGIQVTQMSNNSLHLTQTKYINDLLKRANMVTAKPVTT 297

Query: 1078 PM----LTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTT 1245
             M    + S  L+  D DP ++ + YR +VG+LQY  I+RP+I +SVNK+ Q+MQ P  T
Sbjct: 298  RMFQFRVVSLKLTNSDKDPCENPSLYRSIVGSLQYLIITRPEISFSVNKVCQFMQEPKAT 357

Query: 1246 HWKALKRILRYLAGTLDHGLFFASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLI 1425
            HW+A+KRILRYL GT   G+  +  ++L + AF D+DWG DVDDR+ST+G C+FLG N I
Sbjct: 358  HWQAVKRILRYLCGTATTGIVLSKSNNLHIFAFCDADWGVDVDDRKSTTGFCVFLGCNPI 417

Query: 1426 CWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLS 1605
             WS++KQ  VSRS+ EAEYRS+A+VT +I W+ +LL E+ +   +   I+ DNL A  L+
Sbjct: 418  SWSSRKQQAVSRSTIEAEYRSLAAVTAEITWMKNLLHELQVPNIRTPKIYCDNLSAVLLA 477

Query: 1606 VNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLN 1785
             NP+ HS+TKH ELDL+F+R+KV ++ ISVQH+P+++Q ADIFTKPL+   F+    KL 
Sbjct: 478  ANPILHSKTKHFELDLYFVRDKVQKREISVQHIPSLEQTADIFTKPLTYPSFSSCMYKLR 537

Query: 1786 IRCQGSLELR 1815
            +     + LR
Sbjct: 538  LHFCSPISLR 547


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score =  569 bits (1466), Expect = 0.0
 Identities = 292/593 (49%), Positives = 397/593 (66%), Gaps = 4/593 (0%)
 Frame = +1

Query: 25   STESLSPILPNSPTAPIEIPPNTHMPGGRITIDLPIDDIQAPATVPHHNSETAATTHPMV 204
            S++++SP  P S +  +  P ++                 APA++P          HPM 
Sbjct: 704  SSQNVSPSSPESSSQNVSSPTSS----------------TAPASIPR-----TINNHPMQ 742

Query: 205  TRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLTRMPSD 384
            TRSK+G   P+ + +   +  EP   +QAL  P W  AMQ+EYNAL+ N TW L  +PSD
Sbjct: 743  TRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLPSD 802

Query: 385  KRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRLVLSLA 564
            ++ + CKW+F++K+NADGSI + KARLVA+G+ Q+ G D+ ET+SPV+KP TIR++L+LA
Sbjct: 803  RKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILTLA 862

Query: 565  LANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLYGLKQASRA 744
            L N+W + QLD +NAFLNG L+  IYM Q PGFE  D   + LVCKL+K+LYGLKQA R 
Sbjct: 863  LTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGD---KSLVCKLNKALYGLKQAPRQ 919

Query: 745  WSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQVIQDLN 924
            W +KL   L  FGF  SK D SLF    +   I IL YVDDIIITGSS   I Q+   L+
Sbjct: 920  WFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLD 979

Query: 925  KVFSLKDLGELHYFLGIEIKYTPD-GILLTQGKYIREILEKAGMKDAKGLNSPMLTSPTL 1101
             +FSLK LG L YFLGIE+K+ PD  ++LTQ KYIR++L K  + +A G  SPM ++  L
Sbjct: 980  SIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNCKL 1039

Query: 1102 SKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKRILRYL 1281
            S+   D   D T +R +VGALQYAT++RP+I ++VNK+ Q+M  PL +HW A+KRIL+YL
Sbjct: 1040 SRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILKYL 1099

Query: 1282 AGTLDHGLFF---ASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSAKKQAT 1452
             GTL +GL     A    + LTAF D+DW SD+DDRRSTSGS IF G NLI W ++KQ  
Sbjct: 1100 KGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQRV 1159

Query: 1453 VSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLSVNPVYHSRT 1632
            ++RSSTEAEYRSIA  + ++ W+ +LL E+ +    P+++  DN  A +++ NPV+HS+T
Sbjct: 1160 IARSSTEAEYRSIAQASAELTWIQALLQELKVPFSTPTLL-CDNQSAVAIAHNPVFHSKT 1218

Query: 1633 KHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNIR 1791
            KH+E+D+ F+R+KVL K + V H+PA+DQ AD+ TKPLS   F  LRNKL ++
Sbjct: 1219 KHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLRNKLKVQ 1271


>gb|KYP75940.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1403

 Score =  571 bits (1472), Expect = 0.0
 Identities = 294/559 (52%), Positives = 384/559 (68%), Gaps = 4/559 (0%)
 Frame = +1

Query: 154  TVPHHNSETAATT--HPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQR 327
            TVP   S    TT  HPM+TR+K G+FKPK + A      EP +  QAL+   W++AMQ 
Sbjct: 847  TVPDPASPATRTTNQHPMITRAKIGVFKPKAFLATS----EPISVAQALDNKHWKQAMQD 902

Query: 328  EYNALIKNGTWTLTRMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYT 507
            EYNAL+KN TW L  +P  +  I+CKWIFK K   DGSI R+KARLVARG++Q  GLDYT
Sbjct: 903  EYNALLKNHTWDLVSLPPGRTAITCKWIFKNKYKQDGSILRHKARLVARGFSQQQGLDYT 962

Query: 508  ETYSPVVKPATIRLVLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQ 687
            +T+SPVVKP +IR+VL+LA++  W I Q+D DNAFLNGDL  DIYM Q  GF      G 
Sbjct: 963  DTFSPVVKPVSIRIVLALAVSKGWPIHQIDVDNAFLNGDLKEDIYMLQPQGFH----NGA 1018

Query: 688  P-LVCKLSKSLYGLKQASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVD 864
            P  VCKL K+LYGLKQA RAW  KLT +LL  GF  +++D+SLF   SK T I IL YVD
Sbjct: 1019 PNTVCKLRKALYGLKQAPRAWFQKLTLILLQLGFKQARSDSSLFTFTSKVTSIYILIYVD 1078

Query: 865  DIIITGSSQNEINQVIQDLNKVFSLKDLGELHYFLGIEIKYT-PDGILLTQGKYIREILE 1041
            DIIIT +S   I  +I  L++ F LKDLG LHYFLGIE+      GI L+Q KY+++IL+
Sbjct: 1079 DIIITSNSPAAIQTLISTLHRFFPLKDLGSLHYFLGIEVNSDGAGGIHLSQTKYLKDILD 1138

Query: 1042 KAGMKDAKGLNSPMLTSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQ 1221
            K  M +AK + +PM  S  L+        D + YR ++GALQY TI+RPDI Y+VNK+ Q
Sbjct: 1139 KLNMSNAKPVKTPMAPSLKLTNDGTAVCPDPSLYRSVIGALQYLTITRPDIAYTVNKLCQ 1198

Query: 1222 YMQNPLTTHWKALKRILRYLAGTLDHGLFFASKSSLQLTAFSDSDWGSDVDDRRSTSGSC 1401
            +M +PL +HWKA+KR+LRYL GTL HGL +   +   + A+ DSDW SD +D RSTSG+C
Sbjct: 1199 FMHHPLESHWKAVKRLLRYLQGTLQHGLHYKKSTDTGIHAYCDSDWASDHEDMRSTSGNC 1258

Query: 1402 IFLGKNLICWSAKKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTD 1581
            ++LG N++ W AKKQ  VSRSSTEAE+RS+AS+  ++ ++ +LL+E+  +  +P +IW D
Sbjct: 1259 VYLGPNIVSWMAKKQRVVSRSSTEAEFRSLASLVTEVQYIQNLLSELHNSSTQPPLIWCD 1318

Query: 1582 NLGAKSLSVNPVYHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFF 1761
            N GA  LS NPV H++TKH ELDL F+RE+V +  I V+H+PA  Q+AD+ TK  S   F
Sbjct: 1319 NQGAVLLSANPVLHTKTKHFELDLWFVRERVARGQIQVKHIPARFQVADLLTKAPSSSIF 1378

Query: 1762 ARLRNKLNIRCQGSLELRG 1818
              LR+KL +  Q +L L+G
Sbjct: 1379 LALRHKLTVDKQSTLSLKG 1397


>gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  543 bits (1400), Expect = 0.0
 Identities = 276/534 (51%), Positives = 368/534 (68%), Gaps = 4/534 (0%)
 Frame = +1

Query: 199  MVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLTRMP 378
            M TR+K GI KP+     + + VEP   +QAL  P W  AMQ EYNAL+ NGTW+L  +P
Sbjct: 1    MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWTAAMQTEYNALLHNGTWSLVPLP 60

Query: 379  SDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRLVLS 558
              +  I CKW+F++K+N +G++ +YKA LVA+G+ Q  G DY ET+SPV+KP T+RL+L+
Sbjct: 61   PHRTAIGCKWVFRVKENPNGTVQKYKACLVAKGFNQQFGFDYHETFSPVIKPVTVRLILT 120

Query: 559  LALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLYGLKQAS 738
            LAL + W I+QLD +NAFLNG L+ ++YM Q PGFE  D   + LVCKL K++YGLKQA 
Sbjct: 121  LALTHHWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEASD---KCLVCKLHKAIYGLKQAP 177

Query: 739  RAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQVIQD 918
            RAW  KL S LL F F  SK D SLF        I IL YVDDIIIT ++ + ++ ++  
Sbjct: 178  RAWFEKLKSTLLQFHFQASKCDPSLFVYSHANNVIYILVYVDDIIITSNNSSILHTLVSQ 237

Query: 919  LNKVFSLKDLGELHYFLGIEIKYTPDG-ILLTQGKYIREILEKAGMKDAKGLNSPMLTSP 1095
            L+ VFSLKDLG+L YFLGIE+K   DG ++LTQ KYIR++L +  M+  K ++SPM+   
Sbjct: 238  LHSVFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNRTDMEALKPISSPMIPDS 297

Query: 1096 TLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKRILR 1275
             LSK   +   D + YR +VGALQYATI+R +I +SVNK+ Q+M  PL  H  A+KRILR
Sbjct: 298  KLSKAGSEDFLDASLYRSVVGALQYATITRLEISFSVNKVCQFMSYPLAHHCSAVKRILR 357

Query: 1276 YLAGTLDHGLFF---ASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSAKKQ 1446
            YL GT   GL     +S SSL + A+ D+DW SD+DDRRST G+ IFL  NL+ W +KK+
Sbjct: 358  YLKGTTSWGLHLQPASSSSSLSIHAYCDADWASDLDDRRSTFGASIFLRPNLVSWWSKKK 417

Query: 1447 ATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLSVNPVYHS 1626
              V+RSST+AEYRS+A  T ++ W+ +LL+E+ +N   P +I+ DNL   +L+ NP+ H+
Sbjct: 418  TVVARSSTKAEYRSLALATTEVTWIQTLLSELKVNHSTP-IIFCDNLSTVALAHNPILHA 476

Query: 1627 RTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNI 1788
            RTKH+ELDL F+REKV  K + V HVPAIDQ AD+ TK LS   F  LR+KL +
Sbjct: 477  RTKHMELDLFFVREKVAAKCLQVVHVPAIDQCADVLTKALSPSRFCVLRSKLQV 530


>gb|KYP64199.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  571 bits (1471), Expect = 0.0
 Identities = 301/597 (50%), Positives = 395/597 (66%), Gaps = 4/597 (0%)
 Frame = +1

Query: 10   SQYPQSTESLSPILPNSPTAPIEIPPNTHMPGGRITIDLPIDDIQAPATVPHHNSETAAT 189
            S  P S+  +SP +P +  +         MP    T   P        + P  N      
Sbjct: 812  SHNPSSSTLVSPTVPTNSGSSESNFSLPSMPDNSSTNSPPASSSSPSLSAPPLN------ 865

Query: 190  THPMVTRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLT 369
             HPM+TRSK GI +P+     + S VEP   + AL  P W  AMQ E  AL  N TWTL 
Sbjct: 866  IHPMITRSKNGILQPRLNPTLLLSNVEPKTVKSALTDPHWLSAMQAELTALHDNHTWTLV 925

Query: 370  RMPSDKRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRL 549
             +P  ++ I CKW+F++K+N DGSI +YKARLVA+G+ Q  G+D++ET+SPVVKP TIR+
Sbjct: 926  DLPPGRKSIGCKWVFRLKENPDGSINKYKARLVAKGFHQQPGVDFSETFSPVVKPVTIRI 985

Query: 550  VLSLALANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLYGLK 729
            VLSLA+   W +RQLD +NAFLNG L+ DIYM Q PGF  ++   + LVCKL KSLYGLK
Sbjct: 986  VLSLAVTFQWPLRQLDINNAFLNGMLEEDIYMSQPPGF--IEPNSKHLVCKLHKSLYGLK 1043

Query: 730  QASRAWSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQV 909
            QA RAW  +LTSVLL  GF  SK D SLF   +    + +L YVDDII+TG+S + + Q 
Sbjct: 1044 QAPRAWFDRLTSVLLKLGFHKSKCDPSLFIFSTPSAIVYMLIYVDDIILTGNSSSLMQQF 1103

Query: 910  IQDLNKVFSLKDLGELHYFLGIEIKYTPDG-ILLTQGKYIREILEKAGMKDAKGLNSPML 1086
            I  L+  FSLKDLG L YFLGIE+K   +G +LL+Q KYI ++L K  M+D+KG+++PM+
Sbjct: 1104 INHLHATFSLKDLGTLDYFLGIEVKSLSNGRLLLSQHKYISDLLTKVKMEDSKGISTPMI 1163

Query: 1087 TSPTLSKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKR 1266
                L+K  G    D T YR +VGALQYATI+RP+I +SVNK+SQ+M +P+  HWK +KR
Sbjct: 1164 GGQQLAK-TGTLFNDPTLYRSVVGALQYATITRPEIAFSVNKVSQFMCSPMEEHWKVVKR 1222

Query: 1267 ILRYLAGTLDHGLFFA---SKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSA 1437
            ILRYL GTL HGL F    S SS  LTAF+D+DW +D +DRRSTS +CI+LG NL+ W +
Sbjct: 1223 ILRYLKGTLKHGLVFTPARSSSSFNLTAFTDADWAADPNDRRSTSAACIYLGPNLVSWWS 1282

Query: 1438 KKQATVSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLSVNPV 1617
            KKQ  V+RSSTEAEYR++A    +++W+ SLL E+ I    P V+  DN    +LS NPV
Sbjct: 1283 KKQLLVARSSTEAEYRALAQAVTEVLWIQSLLQELKIRFNTPMVL-CDNQSTVALSHNPV 1341

Query: 1618 YHSRTKHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNI 1788
             HSR+KH+ELD+ F+REKV+ K + V H+P+  Q AD+ TK LS + F  LR+KLN+
Sbjct: 1342 LHSRSKHMELDIFFVREKVISKALVVSHIPSQHQYADLLTKALSPKRFLSLRSKLNV 1398


>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1358

 Score =  569 bits (1466), Expect = 0.0
 Identities = 292/593 (49%), Positives = 397/593 (66%), Gaps = 4/593 (0%)
 Frame = +1

Query: 25   STESLSPILPNSPTAPIEIPPNTHMPGGRITIDLPIDDIQAPATVPHHNSETAATTHPMV 204
            S++++SP  P S +  +  P ++                 APA++P          HPM 
Sbjct: 783  SSQNVSPSSPESSSQNVSSPTSS----------------TAPASIPR-----TINNHPMQ 821

Query: 205  TRSKAGIFKPKTYAAAIQSVVEPSNFRQALEVPEWREAMQREYNALIKNGTWTLTRMPSD 384
            TRSK+G   P+ + +   +  EP   +QAL  P W  AMQ+EYNAL+ N TW L  +PSD
Sbjct: 822  TRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLPSD 881

Query: 385  KRVISCKWIFKIKKNADGSIARYKARLVARGYTQMAGLDYTETYSPVVKPATIRLVLSLA 564
            ++ + CKW+F++K+NADGSI + KARLVA+G+ Q+ G D+ ET+SPV+KP TIR++L+LA
Sbjct: 882  RKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILTLA 941

Query: 565  LANSWTIRQLDFDNAFLNGDLDVDIYMEQVPGFEVVDAQGQPLVCKLSKSLYGLKQASRA 744
            L N+W + QLD +NAFLNG L+  IYM Q PGFE  D   + LVCKL+K+LYGLKQA R 
Sbjct: 942  LTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGD---KSLVCKLNKALYGLKQAPRQ 998

Query: 745  WSSKLTSVLLSFGFVMSKADNSLFFRCSKGTQILILTYVDDIIITGSSQNEINQVIQDLN 924
            W +KL   L  FGF  SK D SLF    +   I IL YVDDIIITGSS   I Q+   L+
Sbjct: 999  WFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLD 1058

Query: 925  KVFSLKDLGELHYFLGIEIKYTPD-GILLTQGKYIREILEKAGMKDAKGLNSPMLTSPTL 1101
             +FSLK LG L YFLGIE+K+ PD  ++LTQ KYIR++L K  + +A G  SPM ++  L
Sbjct: 1059 SIFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNCKL 1118

Query: 1102 SKFDGDPIKDGTSYRQLVGALQYATISRPDICYSVNKISQYMQNPLTTHWKALKRILRYL 1281
            S+   D   D T +R +VGALQYAT++RP+I ++VNK+ Q+M  PL +HW A+KRIL+YL
Sbjct: 1119 SRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILKYL 1178

Query: 1282 AGTLDHGLFF---ASKSSLQLTAFSDSDWGSDVDDRRSTSGSCIFLGKNLICWSAKKQAT 1452
             GTL +GL     A    + LTAF D+DW SD+DDRRSTSGS IF G NLI W ++KQ  
Sbjct: 1179 KGTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQRV 1238

Query: 1453 VSRSSTEAEYRSIASVTCDIMWLHSLLTEIGINIPKPSVIWTDNLGAKSLSVNPVYHSRT 1632
            ++RSSTEAEYRSIA  + ++ W+ +LL E+ +    P+++  DN  A +++ NPV+HS+T
Sbjct: 1239 IARSSTEAEYRSIAQASAELTWIQALLQELKVPFSTPTLL-CDNQSAVAIAHNPVFHSKT 1297

Query: 1633 KHLELDLHFIREKVLQKVISVQHVPAIDQIADIFTKPLSGQFFARLRNKLNIR 1791
            KH+E+D+ F+R+KVL K + V H+PA+DQ AD+ TKPLS   F  LRNKL ++
Sbjct: 1298 KHMEIDVFFVRDKVLSKQLLVYHIPALDQWADLLTKPLSAARFEVLRNKLKVQ 1350