BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00020853
         (770 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposo...   388   e-130
gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposo...   376   e-123
gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposo...   380   e-123
gb|KYP58848.1| Retrovirus-related Pol polyprotein from transposo...   318   e-105
gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subc...   323   e-100
gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japo...   304   4e-96
gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subc...   310   4e-95
gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]     308   1e-94
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   311   2e-94
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc...   308   5e-94
gb|ABA97555.1| retrotransposon protein, putative, Ty1-copia subc...   297   6e-94
gb|AAK50117.1|AC087797_2 putative gag-pol polyprotein [Oryza sat...   308   7e-94
gb|ABF98465.1| retrotransposon protein, putative, Ty1-copia subc...   308   8e-94
gb|AAV43866.1| putative polyprotein [Oryza sativa Japonica Group...   305   1e-93
emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group] gi...   308   2e-93
gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subc...   308   2e-93
gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]     308   2e-93
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   308   2e-93
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   308   2e-93
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   308   2e-93

>gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 565

 Score =  388 bits (997), Expect = e-130
 Identities = 192/256 (75%), Positives = 219/256 (85%)
 Frame = -1

Query: 770 KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
           KYCYVYLI  KS LF+KFK YKAEVENQLEK IKILRSDRGGEY+S+EM +F + HGI+H
Sbjct: 112 KYCYVYLIIHKSELFEKFKVYKAEVENQLEKSIKILRSDRGGEYSSNEMGEFFETHGIIH 171

Query: 590 EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
           EVTP Y+PQSNG+AERKNRTLLDM+NAML+SSGLP N WGEAL++AC ILNR+PYKNSDK
Sbjct: 172 EVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNLWGEALFTACHILNRIPYKNSDK 231

Query: 410 TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
           TPYELWKN+KP LK+LKVWGCLAKVNIPI KKRKIGPKTVDCVF+GYS +S TYRFLV N
Sbjct: 232 TPYELWKNRKPNLKYLKVWGCLAKVNIPINKKRKIGPKTVDCVFLGYSLHSTTYRFLVIN 291

Query: 230 SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSPTIFNEEPIEPRRS 51
           SEV EISNNII+ESRDAVFFENIFP+K+KLS+PV           S +  N++  EPR S
Sbjct: 292 SEVSEISNNIIMESRDAVFFENIFPLKNKLSKPV--YDTSSSVLPSSSTVNKD-FEPRIS 348

Query: 50  KRSRKAKNFGDDFYTF 3
           KR RKAK+FG +FY+F
Sbjct: 349 KRIRKAKDFGPEFYSF 364


>gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 714

 Score =  376 bits (966), Expect = e-123
 Identities = 187/250 (74%), Positives = 213/250 (85%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            KYCYVYLI  KS LF+KFK YKAEVENQLE+ IKILRSDRGGEY+S+EM +F + HGI+H
Sbjct: 440  KYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILRSDRGGEYSSNEMGEFFETHGIIH 499

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            EVTP Y+PQSNG+AERKNRTLLDM+NAML+SSGLP N WGEAL++AC ILNR+PYKNSDK
Sbjct: 500  EVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNLWGEALFTACHILNRIPYKNSDK 559

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYELWKN+KP LK+LKVW CLAKVNIPI KKRKIGPKTVDCVF+GYS +S TYRFLV N
Sbjct: 560  TPYELWKNRKPNLKYLKVWWCLAKVNIPINKKRKIGPKTVDCVFLGYSLHSTTYRFLVIN 619

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSPTIFNEEPIEPRRS 51
            SEV EISNNII+ESRD VFFENIFP+K+KLS+PV           S +I N++  EPR S
Sbjct: 620  SEVSEISNNIIMESRDVVFFENIFPLKNKLSKPV--YNTSSSVLSSSSIVNKD-FEPRIS 676

Query: 50   KRSRKAKNFG 21
            KR RKAK+FG
Sbjct: 677  KRIRKAKDFG 686


>gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 880

 Score =  380 bits (976), Expect = e-123
 Identities = 188/256 (73%), Positives = 216/256 (84%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            KYCYVYLI  KS LF+KFK YKAEVENQLE+ IKILRSDRGGEY+S+EM +F + HGI+H
Sbjct: 442  KYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILRSDRGGEYSSNEMGEFFETHGIIH 501

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            EVTP Y+PQSNG+AERKNRTLLDM+NAML+SSGLP N WGEAL++AC ILNR+PYKNSDK
Sbjct: 502  EVTPPYAPQSNGIAERKNRTLLDMINAMLISSGLPDNLWGEALFTACHILNRIPYKNSDK 561

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYELWKN+KP LK+LKVWGCLAKVNIPI KKRKIGPKTVDCVF+GYS +S TYRFLV  
Sbjct: 562  TPYELWKNRKPNLKYLKVWGCLAKVNIPINKKRKIGPKTVDCVFLGYSLHSTTYRFLVIK 621

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSPTIFNEEPIEPRRS 51
            SEV EISNNII+ESRDA+FFENIFP+K+KLS+PV           S +  N++  E R S
Sbjct: 622  SEVSEISNNIIMESRDAIFFENIFPLKNKLSKPV--YDTSSSILPSSSTVNKD-FETRIS 678

Query: 50   KRSRKAKNFGDDFYTF 3
            KR RKAK+FG  FY+F
Sbjct: 679  KRIRKAKDFGPGFYSF 694


>gb|KYP58848.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 396

 Score =  318 bits (814), Expect = e-105
 Identities = 167/257 (64%), Positives = 198/257 (77%), Gaps = 1/257 (0%)
 Frame = -1

Query: 770 KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
           KYCYVYLI  KS LF+KFK YKAEVENQLEK IKILR     EY+S+EM +F + H I++
Sbjct: 77  KYCYVYLIIHKSELFEKFKVYKAEVENQLEKSIKILRLIEE-EYSSNEMGEFFETHDIIY 135

Query: 590 EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
           EVTP Y PQSNG+AERKNR LLDM+NAML+S GLP N W EAL++AC  LNR+PYKNSDK
Sbjct: 136 EVTPPYVPQSNGIAERKNRILLDMINAMLISYGLPGNLWEEALFTACHSLNRIPYKNSDK 195

Query: 410 TPYELWKNKKPTLKFLKVWG-CLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVF 234
           TPYELWKN+KP LK+LKVWG  + +  IPI KKRKI PKTVDCVF+GYS +S TYR LV 
Sbjct: 196 TPYELWKNRKPNLKYLKVWGPGVLQRCIPINKKRKISPKTVDCVFLGYSLHSTTYRILVI 255

Query: 233 NSEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSPTIFNEEPIEPRR 54
           NSEV +ISNNII+ES+D VF ENIFP+K+KLS+P+           S +I N+   EP  
Sbjct: 256 NSEVAKISNNIIMESKDVVFLENIFPLKNKLSKPI--YDTSSSVLPSSSIVNKN-FEPGI 312

Query: 53  SKRSRKAKNFGDDFYTF 3
           SKR  KAK+FG +FY+F
Sbjct: 313 SKRIIKAKDFGPEFYSF 329


>gb|ABF95851.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1075

 Score =  323 bits (828), Expect = e-100
 Identities = 158/258 (61%), Positives = 189/258 (73%), Gaps = 2/258 (0%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            KYCYVYL+  K   F+ FK +KAE ENQL+ KIKILRSDRGGEY S E + F + HGI+H
Sbjct: 424  KYCYVYLLRTKDEAFEHFKIFKAEAENQLDLKIKILRSDRGGEYLSIEFSKFHQEHGIIH 483

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSPQSNGVAERKNRTL ++VNAML +SGLP   WGEALY+AC +LNRVP K ++ 
Sbjct: 484  ETTPPYSPQSNGVAERKNRTLTNLVNAMLSNSGLPNYMWGEALYTACFVLNRVPAKGTEV 543

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYELWK +KP L FLKVWGCLAKVNIP+VKKRK+GPKTVDCVF+GY+ NS  YRFLV  
Sbjct: 544  TPYELWKGRKPNLNFLKVWGCLAKVNIPVVKKRKLGPKTVDCVFIGYAQNSLAYRFLVVK 603

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDK--LSRPVGACXXXXXXXXSPTIFNEEPIEPR 57
            SE  E+  N ++ESRD  FFE+ FP+K K   S P+             +I +++ +  R
Sbjct: 604  SETTEVRENTVMESRDTTFFEDTFPLKVKSPSSEPISV-------EPRISISSDDSLNLR 656

Query: 56   RSKRSRKAKNFGDDFYTF 3
            RSKRSR  K FGDDF  +
Sbjct: 657  RSKRSRTEKTFGDDFIIY 674


>gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japonica Group]
          Length = 679

 Score =  304 bits (779), Expect = 4e-96
 Identities = 150/265 (56%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRS+RGGE+ S+E   FC+ HGI+H
Sbjct: 261  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSNRGGEFFSNEFDLFCEEHGIIH 320

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N +K
Sbjct: 321  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKNK 380

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 381  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 440

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 441  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 500

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 501  DVSEAPRRSKRQRTAKSFGDDFTVY 525


>gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1060

 Score =  310 bits (793), Expect = 4e-95
 Identities = 152/265 (57%), Positives = 192/265 (72%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 389  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 448

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 449  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 508

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 509  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAYHSIAYRFLIVK 568

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP+++   I+ESRDA+FFE+ FPMKD  S               P        + +EE
Sbjct: 569  SEVPDMNVGTIMESRDAIFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 628

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 629  DVSEAPRRSKRQRTAKSFGDDFTVY 653


>gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1059

 Score =  308 bits (789), Expect = 1e-94
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 630  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 689

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 690  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 749

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 750  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 809

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 810  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 869

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 870  DVSEAPRRSKRQRTAKSFGDDFTVY 894


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  311 bits (796), Expect = 2e-94
 Identities = 152/265 (57%), Positives = 192/265 (72%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 482  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 541

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E+TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 542  EMTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 601

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 602  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 661

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA+FFE+ FPMKD  S               P        + +EE
Sbjct: 662  SEVPDMHVGTIMESRDAIFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 721

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 722  DVSEAPRRSKRQRTAKSFGDDFTVY 746


>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1151

 Score =  308 bits (789), Expect = 5e-94
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 392  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 451

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 452  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 511

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 512  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 571

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 572  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 631

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 632  DVSEAPRRSKRQRTAKSFGDDFTVY 656


>gb|ABA97555.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 634

 Score =  297 bits (761), Expect = 6e-94
 Identities = 149/265 (56%), Positives = 185/265 (69%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770 KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
           ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 177 RFCYVYLLKTKDETLDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 236

Query: 590 EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
           E TP YSP+SNG+AERKNRTL D+VNAML ++GL K  WGEAL ++  +LNRVP +N DK
Sbjct: 237 ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLSKAWWGEALLTSNHVLNRVPNRNKDK 296

Query: 410 TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
           TPYE+W  +KP L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 297 TPYEIWIGRKPLLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 356

Query: 230 SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
           SEVP++    I+ES DA FFE+ FPMKD  S               P          +EE
Sbjct: 357 SEVPDMHVGTIMESHDATFFESFFPMKDTHSGSSQPFEIIPSLITPPEQTKHTHEHVSEE 416

Query: 71  PIE--PRRSKRSRKAKNFGDDFYTF 3
            +    RRSKR R AK+FGDDF  +
Sbjct: 417 DVSEASRRSKRQRTAKSFGDDFTVY 441


>gb|AAK50117.1|AC087797_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1198

 Score =  308 bits (789), Expect = 7e-94
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 454  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 513

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 514  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 573

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 574  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 633

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 634  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 693

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 694  DVSEAPRRSKRQRTAKSFGDDFTVY 718


>gb|ABF98465.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1210

 Score =  308 bits (789), Expect = 8e-94
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 454  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 513

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 514  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 573

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 574  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 633

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 634  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 693

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 694  DVSEAPRRSKRQRTAKSFGDDFTVY 718


>gb|AAV43866.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|55168291|gb|AAV44157.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1046

 Score =  305 bits (782), Expect = 1e-93
 Identities = 150/265 (56%), Positives = 189/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK L SDRGGE+ S+E   FCK HGI+H
Sbjct: 265  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLWSDRGGEFFSNEFDLFCKEHGIIH 324

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 325  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 384

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAK+N+PI KKRK+GPKT+DCVF+GY+ +S  YRFL+  
Sbjct: 385  TPYEIWIGRKPSLSYLRTWGCLAKINVPITKKRKLGPKTMDCVFLGYAHHSIAYRFLIVK 444

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP--TIFNEEPI--- 66
            SEVP++    I+ESRDA+FFE+ FPMKD  S               P  T +  E +   
Sbjct: 445  SEVPDMHVGTIMESRDAIFFESFFPMKDTHSSSSQPSEIIPSSITPPEQTEYTHEYVTKD 504

Query: 65   ----EPRRSKRSRKAKNFGDDFYTF 3
                 PRRSKR R AK+FGDDF  +
Sbjct: 505  DDSEAPRRSKRQRMAKSFGDDFTVY 529


>emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group]
            gi|38345937|emb|CAD41412.2| OSJNBb0078D11.12 [Oryza
            sativa Japonica Group]
          Length = 1320

 Score =  308 bits (790), Expect = 2e-93
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELISEE 760

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVY 785


>gb|ABA98136.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1249

 Score =  308 bits (788), Expect = 2e-93
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPFEIIPSSITPPEQTEHTHELVSEE 760

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVY 785


>gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1289

 Score =  308 bits (789), Expect = 2e-93
 Identities = 152/265 (57%), Positives = 191/265 (72%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W ++KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 641  TPYEIWIDRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAYHSIAYRFLIVK 700

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVY 785


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  308 bits (789), Expect = 2e-93
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVY 785


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  308 bits (789), Expect = 2e-93
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVY 785


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  308 bits (789), Expect = 2e-93
 Identities = 152/265 (57%), Positives = 190/265 (71%), Gaps = 9/265 (3%)
 Frame = -1

Query: 770  KYCYVYLINAKSNLFDKFKEYKAEVENQLEKKIKILRSDRGGEYASDEMADFCKLHGIVH 591
            ++CYVYL+  K    D FK YKAEVENQL++KIK LRSDRGGE+ S+E   FC+ HGI+H
Sbjct: 521  RFCYVYLLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIH 580

Query: 590  EVTPSYSPQSNGVAERKNRTLLDMVNAMLLSSGLPKNCWGEALYSACLILNRVPYKNSDK 411
            E TP YSP+SNG+AERKNRTL D+VNAML ++GLPK  WGEAL ++  +LNRVP +N DK
Sbjct: 581  ERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDK 640

Query: 410  TPYELWKNKKPTLKFLKVWGCLAKVNIPIVKKRKIGPKTVDCVFVGYSSNSPTYRFLVFN 231
            TPYE+W  +KP+L +L+ WGCLAKVN+PI KKRK+GPKTVDCVF+GY+ +S  YRFL+  
Sbjct: 641  TPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVK 700

Query: 230  SEVPEISNNIIIESRDAVFFENIFPMKDKLSRPVGACXXXXXXXXSP-------TIFNEE 72
            SEVP++    I+ESRDA FFE+ FPMKD  S               P        + +EE
Sbjct: 701  SEVPDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPSSITPPEQTEHTHELVSEE 760

Query: 71   PIE--PRRSKRSRKAKNFGDDFYTF 3
             +   PRRSKR R AK+FGDDF  +
Sbjct: 761  DVSEAPRRSKRQRTAKSFGDDFTVY 785