BLASTX nr result
ID: Rehmannia27_contig00018406
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00018406
(5253 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica m... 2001 0.0
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 1999 0.0
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1983 0.0
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1979 0.0
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1979 0.0
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1978 0.0
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1978 0.0
emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1977 0.0
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1977 0.0
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 1973 0.0
gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus] 1969 0.0
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 1922 0.0
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 1637 0.0
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 1284 0.0
dbj|BAU45640.1| RNA-dependent RNA polymerase [Hydrangea ringspot... 1263 0.0
dbj|BAU45634.1| RNA-dependent RNA polymerase [Hydrangea ringspot... 1263 0.0
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 1252 0.0
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 1227 0.0
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 1219 0.0
dbj|BAJ12046.1| RNA dependent RNA polymerase [Potato virus X] 1014 0.0
>gb|AMN10083.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1387
Score = 2001 bits (5185), Expect = 0.0
Identities = 984/1167 (84%), Positives = 1038/1167 (88%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFH+YDQLEWLTVGHL A QPTITAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHRYDQLEWLTVGHLTAPGQPTITAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTP RRTF T++HYVTVP IFLPE YNCRTPISKT MMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPARRTFATSDHYVTVPQIFLPEDYNCRTPISKTTMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF+DVLSGNL+QRLLRPLR+D Q
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFQDVLSGNLLQRLLRPLRADFQ 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
RVLQFF+GRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNP+DADT
Sbjct: 376 RVLQFFQGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADT 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
R F++F+ + T+ +LE +AE+ HT LKV L +QL A+H LG+ R G
Sbjct: 436 SRGFQDFTRATTPKLQPTVEATLEATAESSDHHTQLKVLCDTLPEKQLEAIHALGHLRCG 495
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GPLLP T E + AS A + D P P TLPWVAWLPKL
Sbjct: 496 GPLLPAPTQSCSPAEPCPDLPPSPVKSTASPASPDPNVLDAQPTTQAPETLPWVAWLPKL 555
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALE+Q DPSTGE+IMPITD RDLP+ATLP HW L +LTTLRSLNRFPT W
Sbjct: 556 NALGFEALEVQHDPSTGEMIMPITDTRDLPRATLPPHWQGHDLESILTTLRSLNRFPTPW 615
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDR RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT+N A+LAISVIHGAGGSGKSQ
Sbjct: 616 SPDRTRARAFTSDVKNSRTGKALHRESQAWKETQTMLTENTQADLAISVIHGAGGSGKSQ 675
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQNP LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SP+VIFDDYG
Sbjct: 676 ALQTLLRQNPSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYG 735
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFA+THA+LEL ILTGDPRQSTHHE+NEEALISKL PATTI+S LSRYYINA
Sbjct: 736 KLPQGYLEAFALTHANLELAILTGDPRQSTHHESNEEALISKLPPATTIYSTLSRYYINA 795
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSK+LANKLGVYS+NSCPL VTYGFQP PG+HLLVPSLVKKAAFTD GHKVSTYAGC
Sbjct: 796 THRNSKYLANKLGVYSANSCPLNVTYGFQPLPGMHLLVPSLVKKAAFTDVGHKVSTYAGC 855
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF
Sbjct: 856 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 915
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EF VE+ TTLDDFKE L DKF+REIFT GH
Sbjct: 916 LSLVREDKITEFQAPEDAPKPVTPPVTHFPVEEPATTLDDFKEELHDKFDREIFTSDRGH 975
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPT QLFSHQQAKDEALLWETIKARLTISTPEAN++EFRAKKDLGDILWANYH
Sbjct: 976 TNCVQTDDPTIQLFSHQQAKDEALLWETIKARLTISTPEANIDEFRAKKDLGDILWANYH 1035
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
+AM LPKEQP+FSEDLWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQW
Sbjct: 1036 RAMGLPKEQPDFSEDLWTRCAEEVQNTYLKKSLAQLKGGERRQSPDFHEHQILIFLKSQW 1095
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLS
Sbjct: 1096 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALGPNNIMINCEKTPQDLS 1155
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1156 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1215
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
+GTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFAL
Sbjct: 1216 MGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFAL 1275
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQ+KAGVKDAI
Sbjct: 1276 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQRKAGVKDAI 1335
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1336 ANVVANYSLDAKLAYSLGDDLQDLLSP 1362
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 1999 bits (5178), Expect = 0.0
Identities = 987/1167 (84%), Positives = 1043/1167 (89%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL A NQPT+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTT+ YVTVPDIFLPE+YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D+Q
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQ 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
R+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PVNPDDA+T
Sbjct: 376 RILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
+FREF S T+ + LE S E+ +HTSLKV LS EQL ALHELGN+R G
Sbjct: 436 TESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHELGNSRCG 495
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GP+LPK + T S+ L + H P P + K
Sbjct: 496 GPMLPKRSSNH---------------THTSSDLLRRRH----PRQQRSTNPPMGSLAAKA 536
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
+GFEALEIQTDPSTG+ IMPITD R+LP+A +P HW+ P K++ TLR+LNRFPT W
Sbjct: 537 KRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRFPTPW 596
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLTDN + AISVIHGAGGSGKSQ
Sbjct: 597 SPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGSGKSQ 656
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQNP+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ P+VIFDDYG
Sbjct: 657 ALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIFDDYG 716
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRYYINA
Sbjct: 717 KLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRYYINA 776
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSKFLANKLG+YSSN CPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC
Sbjct: 777 THRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 836
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEATPYLKTF
Sbjct: 837 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEATPYLKTF 896
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EFS VE+ TT LDDF+E L DKF+REIFTEAHGH
Sbjct: 897 LSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDREIFTEAHGH 956
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLGDILW NYH
Sbjct: 957 TNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDILWTNYH 1016
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
KAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFHEHQILIFLKSQW
Sbjct: 1017 KAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQILIFLKSQW 1076
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS
Sbjct: 1077 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 1136
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1137 RWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1196
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
LGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAIAQVCPEKPSFAL
Sbjct: 1197 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCPEKPSFAL 1256
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI
Sbjct: 1257 LKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 1316
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGD+L DLLSP
Sbjct: 1317 TNVVANYSLDAKLAYSLGDELHDLLSP 1343
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1983 bits (5138), Expect = 0.0
Identities = 983/1167 (84%), Positives = 1033/1167 (88%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL Q T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS +
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T
Sbjct: 376 QLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
++F+ F + T+ +L +E H SL + L QL ALHELGN R G
Sbjct: 436 TQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCG 490
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GPLLPK P + R +D +P DP+TLPWVAWLPKL
Sbjct: 491 GPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQDPSTLPWVAWLPKL 548
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLRSLNR+PT W
Sbjct: 549 NALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPW 608
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAGGSGKSQ
Sbjct: 609 NPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQ 668
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYG
Sbjct: 669 ALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYG 728
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINA
Sbjct: 729 KLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINA 788
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC
Sbjct: 789 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 848
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF
Sbjct: 849 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 908
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF AHGH
Sbjct: 909 LSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGH 968
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY
Sbjct: 969 TNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYR 1028
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQW
Sbjct: 1029 KAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQW 1088
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLS
Sbjct: 1089 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLS 1148
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1149 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1208
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+L
Sbjct: 1209 MGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSL 1268
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI
Sbjct: 1269 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 1328
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1329 TNVVANYSLDAKLAYSLGDDLQDLLSP 1355
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1979 bits (5128), Expect = 0.0
Identities = 981/1167 (84%), Positives = 1032/1167 (88%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL Q T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS +
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T
Sbjct: 376 QLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
++F+ F + T+ +L +E H SL + + L QL ALHELGN R G
Sbjct: 436 TQSFQAFCQAT-----ATVEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCG 490
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GPLLPK P + R +D +P DP+TLPWVAWLPKL
Sbjct: 491 GPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQDPSTLPWVAWLPKL 548
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLR LNR+PT W
Sbjct: 549 NALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPW 608
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAGGSGKSQ
Sbjct: 609 NPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQ 668
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYG
Sbjct: 669 ALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYG 728
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINA
Sbjct: 729 KLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINA 788
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC
Sbjct: 789 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 848
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF
Sbjct: 849 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 908
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF AHGH
Sbjct: 909 LSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGH 968
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY
Sbjct: 969 TNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYR 1028
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQW
Sbjct: 1029 KAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQW 1088
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLS
Sbjct: 1089 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLS 1148
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1149 RWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1208
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+L
Sbjct: 1209 MGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSL 1268
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI
Sbjct: 1269 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 1328
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1329 TNVVANYSLDAKLAYSLGDDLQDLLSP 1355
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1979 bits (5127), Expect = 0.0
Identities = 981/1167 (84%), Positives = 1032/1167 (88%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL Q T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS +
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T
Sbjct: 376 QLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
++F+ F + T+ +L +E H SL + + L QL ALHELGN R G
Sbjct: 436 TQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCG 490
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GPLLPK P + R +D +P DP+TLPWVAWLPKL
Sbjct: 491 GPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQDPSTLPWVAWLPKL 548
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLR LNR+PT W
Sbjct: 549 NALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPW 608
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAGGSGKSQ
Sbjct: 609 NPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQ 668
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYG
Sbjct: 669 ALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYG 728
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINA
Sbjct: 729 KLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINA 788
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC
Sbjct: 789 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 848
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF
Sbjct: 849 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 908
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF AHGH
Sbjct: 909 LSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGH 968
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY
Sbjct: 969 TNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYR 1028
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQW
Sbjct: 1029 KAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQW 1088
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLS
Sbjct: 1089 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLS 1148
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1149 RWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1208
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+L
Sbjct: 1209 MGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSL 1268
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI
Sbjct: 1269 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 1328
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1329 TNVVANYSLDAKLAYSLGDDLQDLLSP 1355
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1978 bits (5124), Expect = 0.0
Identities = 980/1171 (83%), Positives = 1034/1171 (88%), Gaps = 4/1171 (0%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHL Q T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPD+FLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+S I
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGIT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T
Sbjct: 376 QLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
++F+ F + T+ +LE AE H SL + L QL ALHELGNTR G
Sbjct: 436 TQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHELGNTRCG 490
Query: 901 GPLLPK----ITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAW 1068
GPLLPK +T E + + + T +P DP TLPWVAW
Sbjct: 491 GPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKTT------QTLDLPHPEDPTTLPWVAW 544
Query: 1069 LPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRF 1248
LPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++++TLRS NR+
Sbjct: 545 LPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIISTLRSFNRY 604
Query: 1249 PTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGS 1428
PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML +N NLAISVIHGAGGS
Sbjct: 605 PTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISVIHGAGGS 664
Query: 1429 GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIF 1608
GKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIF
Sbjct: 665 GKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIF 724
Query: 1609 DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 1788
DDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRY
Sbjct: 725 DDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRY 784
Query: 1789 YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST 1968
YINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST
Sbjct: 785 YINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST 844
Query: 1969 YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 2148
YAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY
Sbjct: 845 YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 904
Query: 2149 LKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTE 2328
LKTFLSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF
Sbjct: 905 LKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDKFDREIFNP 964
Query: 2329 AHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILW 2508
HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKKDLGDILW
Sbjct: 965 THGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKKDLGDILW 1024
Query: 2509 ANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFL 2688
NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEHQILIFL
Sbjct: 1025 ENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFHEHQILIFL 1084
Query: 2689 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTP 2868
KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNIMINCEKTP
Sbjct: 1085 KSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNIMINCEKTP 1144
Query: 2869 QDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLS 3048
QDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLS
Sbjct: 1145 QDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLS 1204
Query: 3049 PKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKP 3228
PKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKP
Sbjct: 1205 PKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKP 1264
Query: 3229 SFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV 3408
SF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV
Sbjct: 1265 SFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV 1324
Query: 3409 KDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3501
KDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1325 KDAITNVVANYSLDAKLAYSLGDDLQDLLSP 1355
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1978 bits (5124), Expect = 0.0
Identities = 980/1167 (83%), Positives = 1031/1167 (88%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL Q T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS +
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T
Sbjct: 376 QLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
++F+ F + T+ +L +E H SL + L QL ALHELGN R G
Sbjct: 436 TQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCG 490
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GPLLPK P + R +D +P DP+TLPWVAWLPKL
Sbjct: 491 GPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQDPSTLPWVAWLPKL 548
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLRSLNR+PT W
Sbjct: 549 NALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRYPTPW 608
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAGGSGKSQ
Sbjct: 609 NPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQ 668
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYG
Sbjct: 669 ALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYG 728
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINA
Sbjct: 729 KLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINA 788
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSK LANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC
Sbjct: 789 THRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 848
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF
Sbjct: 849 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 908
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF AHGH
Sbjct: 909 LSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGH 968
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY
Sbjct: 969 TNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYR 1028
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEH ILIFLKSQW
Sbjct: 1029 KAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHILIFLKSQW 1088
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE+TPQDLS
Sbjct: 1089 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCERTPQDLS 1148
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1149 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1208
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+L
Sbjct: 1209 MGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSL 1268
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI
Sbjct: 1269 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 1328
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1329 TNVVANYSLDAKLAYSLGDDLQDLLSP 1355
>emb|CEN56830.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1977 bits (5123), Expect = 0.0
Identities = 973/1167 (83%), Positives = 1034/1167 (88%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHL A T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL S
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGAT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PVNPDDA+T
Sbjct: 376 QILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
+F+ F + + LE AE H SL++ LS QL ALHELGN R G
Sbjct: 436 THSFQAFCQAA-----AAVETILEQQAETPDEHQSLRLDCPTLSEHQLWALHELGNARCG 490
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GPLLP+ E + N +P DP TLPWVAWLPKL
Sbjct: 491 GPLLPQRPDTSTVVEPCPDLPPETHAAPEPSQRNT--QAPNLPSPQDPTTLPWVAWLPKL 548
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALEIQ DPSTG +IMPITD ++LP+A P HW P + ++++TLRSLNR+PT W
Sbjct: 549 NALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIISTLRSLNRYPTPW 608
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++ NLAISVIHGAGGSGKSQ
Sbjct: 609 NPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHGAGGSGKSQ 668
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYG
Sbjct: 669 ALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYG 728
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINA
Sbjct: 729 KLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINA 788
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGC
Sbjct: 789 THRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGC 848
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTF
Sbjct: 849 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTF 908
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVRED++AEFS VED TTTLDDF+E L DKF+REIF +AHGH
Sbjct: 909 LSLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGH 968
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY
Sbjct: 969 TNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYR 1028
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQW
Sbjct: 1029 KAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQW 1088
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLS
Sbjct: 1089 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLS 1148
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1149 RWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1208
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
LGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+L
Sbjct: 1209 LGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSL 1268
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI
Sbjct: 1269 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 1328
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1329 TNVVANYSLDAKLAYSLGDDLQDLLSP 1355
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1977 bits (5121), Expect = 0.0
Identities = 980/1167 (83%), Positives = 1031/1167 (88%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL Q T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS +
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T
Sbjct: 376 QLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
++F+ F + T+ +L +E H SL + + L QL ALHELGN R G
Sbjct: 436 TQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGNARCG 490
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
PLLPK P + R +D +P DP+TLPWVAWLPKL
Sbjct: 491 APLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQDPSTLPWVAWLPKL 548
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLR LNR+PT W
Sbjct: 549 NALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRYPTPW 608
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAGGSGKSQ
Sbjct: 609 NPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGSGKSQ 668
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYG
Sbjct: 669 ALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYG 728
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINA
Sbjct: 729 KLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINA 788
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC
Sbjct: 789 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 848
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF
Sbjct: 849 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 908
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF AHGH
Sbjct: 909 LSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGH 968
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY
Sbjct: 969 TNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYR 1028
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQW
Sbjct: 1029 KAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQW 1088
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLS
Sbjct: 1089 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLS 1148
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1149 RWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1208
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+L
Sbjct: 1209 MGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSL 1268
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI
Sbjct: 1269 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 1328
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1329 TNVVANYSLDAKLAYSLGDDLQDLLSP 1355
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 1973 bits (5112), Expect = 0.0
Identities = 978/1167 (83%), Positives = 1030/1167 (88%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHL Q T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS +
Sbjct: 316 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPDDA+T
Sbjct: 376 QLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
++F+ F + T+ +L +E H SL + L QL ALHELGN R G
Sbjct: 436 TQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGNARCG 490
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GPLLPK P + R +D +P DP+TLPWVAWLPKL
Sbjct: 491 GPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHPQDPSTLPWVAWLPKL 548
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P ++++L+TLRSLNR+PT W
Sbjct: 549 NALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSLNRYPTPW 608
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLT+N NLAISVIHGAGGSGKSQ
Sbjct: 609 NPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGAGGSGKSQ 668
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQ P LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ P+VIFDDYG
Sbjct: 669 ALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYG 728
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRYYINA
Sbjct: 729 KLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRYYINA 788
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
THRNSKFLANKLGVYSSNSCPLKVTYGFQP+PGLHLLVPSLVKKAAFTDAGHKVSTYAGC
Sbjct: 789 THRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 848
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF
Sbjct: 849 QGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 908
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF AHGH
Sbjct: 909 LSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIFNPAHGH 968
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDILW NY
Sbjct: 969 TNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDILWENYR 1028
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILIFLKSQW
Sbjct: 1029 KAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILIFLKSQW 1088
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLS
Sbjct: 1089 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLS 1148
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1149 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1208
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSF+L
Sbjct: 1209 MGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFSL 1268
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI
Sbjct: 1269 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 1328
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ NYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1329 TNVVDNYSLDAKLAYSLGDDLQDLLSP 1355
>gb|AMD78101.1| RdRP [Plantago asiatica mosaic virus]
Length = 1380
Score = 1969 bits (5102), Expect = 0.0
Identities = 970/1168 (83%), Positives = 1034/1168 (88%), Gaps = 1/1168 (0%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHL A T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHLFIFQ 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEAKERDIW
Sbjct: 256 RGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQHYQPSE TLLVNYFE TASLDSHTCFED+LSGNL+QR+LRPL S
Sbjct: 316 AKFRQLISTKELQHYQPSETTLLVNYFELTASLDSHTCFEDILSGNLLQRILRPLTSGAT 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
++L FFRGRPSFVKLI+ALDWQPITLEFPVR V+T LRGPP F +PFT+P PVNPDDA+T
Sbjct: 376 QILNFFRGRPSFVKLIQALDWQPITLEFPVRKVHTLLRGPPWFDSPFTRPQPVNPDDAET 435
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
F+ F + + LE AE H SL++ LS QL +LHELGN R G
Sbjct: 436 THIFQAFCQAA-----AAVETILEQQAETPEEHQSLRLDCPTLSEHQLWSLHELGNARCG 490
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGD-HTDQVPVNSDPATLPWVAWLPK 1077
GPLLP+ T A+ +Q + +P DP TLPWVAWLPK
Sbjct: 491 GPLLPQ---RPDTATVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLPWVAWLPK 547
Query: 1078 LNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTS 1257
LNALGFEALEIQ DPSTG +IMPITD ++LP+A P HW +P + ++++TLRSLNR+PT
Sbjct: 548 LNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQDPDMEQIISTLRSLNRYPTP 607
Query: 1258 WCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKS 1437
W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++ NLAISVIHGAGGSGKS
Sbjct: 608 WNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHGAGGSGKS 667
Query: 1438 QALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDY 1617
QALQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDY
Sbjct: 668 QALQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDY 727
Query: 1618 GKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYIN 1797
GKLPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYIN
Sbjct: 728 GKLPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYIN 787
Query: 1798 ATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAG 1977
ATHRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAG
Sbjct: 788 ATHRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAG 847
Query: 1978 CQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKT 2157
CQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKT
Sbjct: 848 CQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKT 907
Query: 2158 FLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHG 2337
FLSLVREDK+AEFS VED TTTLDDF+E L DKF+REIF +AHG
Sbjct: 908 FLSLVREDKVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHG 967
Query: 2338 HTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANY 2517
HTNCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY
Sbjct: 968 HTNCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENY 1027
Query: 2518 HKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQ 2697
KAMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQ
Sbjct: 1028 RKAMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQ 1087
Query: 2698 WVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDL 2877
WVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDL
Sbjct: 1088 WVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDL 1147
Query: 2878 SRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKI 3057
SRWVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKI
Sbjct: 1148 SRWVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKI 1207
Query: 3058 FLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFA 3237
FLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+
Sbjct: 1208 FLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFS 1267
Query: 3238 LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDA 3417
LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDA
Sbjct: 1268 LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDA 1327
Query: 3418 ISNVIANYSLDAKLAYSLGDDLQDLLSP 3501
I+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1328 ITNVVANYSLDAKLAYSLGDDLQDLLSP 1355
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 1922 bits (4979), Expect = 0.0
Identities = 951/1167 (81%), Positives = 1017/1167 (87%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL A PT+TAQRLETKGANHLFIFQ
Sbjct: 195 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANHLFIFQ 254
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+
Sbjct: 255 RGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHL 314
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
+ +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV L + I
Sbjct: 315 GQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGIS 373
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNP+DAD
Sbjct: 374 RILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADI 433
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
F++FS + ++ T+ LE SAE+ HT LKV + LS QL A+H LG++R G
Sbjct: 434 SSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHALGHSRCG 493
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWVAWLPKL 1080
GPLLP++T + E ++AS A + D P +P TLPWVAWLPKL
Sbjct: 494 GPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPWVAWLPKL 553
Query: 1081 NALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSW 1260
NALGFEALE+Q DPSTGE+IMPITD ++LP+ATLP HW L ++L+TLRSLNRFPT W
Sbjct: 554 NALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSLNRFPTPW 613
Query: 1261 CPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQ 1440
PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N LAISVIHGAGGSGKSQ
Sbjct: 614 SPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGAGGSGKSQ 673
Query: 1441 ALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYG 1620
ALQTLLRQ+ LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SP+VIFDDYG
Sbjct: 674 ALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIFDDYG 733
Query: 1621 KLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINA 1800
KLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S SRYYINA
Sbjct: 734 KLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFSRYYINA 793
Query: 1801 THRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGC 1980
T RNSKFLANKLGVYS+NSCPL VTYGFQP PGLHLLVPSL+KKAAFTDAGHKVS+YAGC
Sbjct: 794 TLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSSYAGC 853
Query: 1981 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTF 2160
QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEATPYLKTF
Sbjct: 854 QGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEATPYLKTF 913
Query: 2161 LSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGH 2340
LSLVREDKI EF VE+ TTLDDFKE L DKF+REIFT GH
Sbjct: 914 LSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKFDREIFTSDRGH 973
Query: 2341 TNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYH 2520
TNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKKDLGDILW NYH
Sbjct: 974 TNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGDILWVNYH 1033
Query: 2521 KAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQW 2700
+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+++Q+KGGERRQSPDFHEHQILIFLKSQW
Sbjct: 1034 RAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQILIFLKSQW 1093
Query: 2701 VKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 2880
VKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS
Sbjct: 1094 VKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLS 1153
Query: 2881 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 3060
RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF
Sbjct: 1154 RWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIF 1213
Query: 3061 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFAL 3240
LGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPEKPSFAL
Sbjct: 1214 LGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPEKPSFAL 1273
Query: 3241 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI 3420
LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGV+DAI
Sbjct: 1274 LKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVRDAI 1333
Query: 3421 SNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 1334 TNVVANYSLDAKLAYSLGDDLQDLLSP 1360
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 1637 bits (4240), Expect = 0.0
Identities = 827/1177 (70%), Positives = 935/1177 (79%), Gaps = 10/1177 (0%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
LTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + + T+TAQRLETKGANHLFIFQ
Sbjct: 196 LTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLISEST-TVTAQRLETKGANHLFIFQ 254
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RG YLTPERRTFTT YVTVP+IFLP N RTPI+KT+ MQ+FFYIKSVKE +ERD+W
Sbjct: 255 RGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLW 314
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q
Sbjct: 315 AKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQ 374
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPDDADT 720
+++FF+G P KLIKAL WQP+ LEF V TV R PPGF +P +P PVN DA T
Sbjct: 375 ALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALT 434
Query: 721 MRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNTRLG 900
A ++ SL + + LS +QL ALH LG+ R
Sbjct: 435 TAA---------------------------CANQSLPLDN--LSEDQLEALHVLGSLRTD 465
Query: 901 GPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNS---------DPATL 1053
G LP +P + E T ++A + T V V++ DP TL
Sbjct: 466 GESLP--SPPKAPLETGPHPTP----TISAAGPTKTVPTPNVEVSANPLTGTPLPDPDTL 519
Query: 1054 PWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPG-LSKVLTTL 1230
PW AWLP L ALGFEA EIQTDP IMPITD++ LP T E+ + KV+ TL
Sbjct: 520 PWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVITL 579
Query: 1231 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1410
+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LT+ L +SVI
Sbjct: 580 KQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLSVI 639
Query: 1411 HGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 1590
HGAGGSGKSQALQT+LR +P+LP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S
Sbjct: 640 HGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSST 699
Query: 1591 SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 1770
+P+VIFDDYGKLPQG++EAFA+ L+L ILTGDPRQSTHHE+NE+A+I++L PAT IF
Sbjct: 700 APVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIF 759
Query: 1771 SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 1950
S L RYYINATHRN K LANKLGVYSSN PL V+YGF+P+PGLHLLVPSLVKKAAF DA
Sbjct: 760 SALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADA 819
Query: 1951 GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 2130
GHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFWEK
Sbjct: 820 GHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFWEK 879
Query: 2131 LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFE 2310
LEATPYLKTFLSLVRE K+ EF+ VE+ + TL ++SL+DK++
Sbjct: 880 LEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQDSLADKYD 939
Query: 2311 REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 2490
REI HG TNCVQ +D T QLFSHQQAKDEALLWETI ARL +STPEANL EF AKKD
Sbjct: 940 REILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAEFHAKKD 999
Query: 2491 LGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEH 2670
LGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL KS+ QIKGGERRQSPDF E+
Sbjct: 1000 LGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGERRQSPDFPEN 1059
Query: 2671 QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMI 2850
+ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL PNNIMI
Sbjct: 1060 KILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALGPNNIMI 1119
Query: 2851 NCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGY 3030
NCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+FNLPEWVIEGY
Sbjct: 1120 NCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPEWVIEGY 1179
Query: 3031 LDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQ 3210
LDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF IP+ AQ+YAGDDCAIA+
Sbjct: 1180 LDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGDDCAIAE 1239
Query: 3211 VCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKA 3390
VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITPKGLIKDPLKLH+SLELAKA
Sbjct: 1240 VCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSSLELAKA 1299
Query: 3391 QKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLSP
Sbjct: 1300 LRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSP 1336
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 1284 bits (3323), Expect = 0.0
Identities = 626/686 (91%), Positives = 653/686 (95%)
Frame = +1
Query: 1444 LQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGK 1623
LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGK
Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60
Query: 1624 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 1803
LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120
Query: 1804 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQ 1983
HRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180
Query: 1984 GITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 2163
GITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240
Query: 2164 SLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 2343
SLVRED++AEFS VED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241 SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300
Query: 2344 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 2523
NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301 NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360
Query: 2524 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 2703
AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361 AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420
Query: 2704 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 2883
KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480
Query: 2884 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 3063
WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481 WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540
Query: 3064 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 3243
GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541 GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600
Query: 3244 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 3423
KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660
Query: 3424 NVIANYSLDAKLAYSLGDDLQDLLSP 3501
NV+ANYSLDAKLAYSLGDDLQDLLSP
Sbjct: 661 NVVANYSLDAKLAYSLGDDLQDLLSP 686
>dbj|BAU45640.1| RNA-dependent RNA polymerase [Hydrangea ringspot virus]
Length = 1387
Score = 1263 bits (3268), Expect = 0.0
Identities = 669/1178 (56%), Positives = 803/1178 (68%), Gaps = 11/1178 (0%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
L Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITAQR+ETK ANHLF+F
Sbjct: 196 LQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFI 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RG TP R+F Y T+P IFLP +N RTP +KT + QMF Y+KS+K+ E D++
Sbjct: 256 RGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLY 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQL T +LQ P EITL+VNYF + LDS TCF+D+LSG+ ++RLL+PL ++
Sbjct: 316 AKFRQLTKTDDLQELDPKEITLVVNYFLLISRLDSVTCFDDILSGSALRRLLKPLICWME 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRGPPGFHNPFTKPHPVNPDD 711
++ Q GR FV+L+KAL+W IT V T +T R G + + P
Sbjct: 376 KMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGSFKALPLGNELGPGL 435
Query: 712 ADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNT 891
+ +RA Y + T D + AE A + G L A E
Sbjct: 436 PEELRAEVARYYGNALLTGL---DETDPKAEAFALLCNNPHG-TTLFAPPTTAPEEDITH 491
Query: 892 RLGGPLLPKITPEE--QDREXXXXXXXXXXXTKASAALNQ-----GDHTDQVPVNSDPAT 1050
R+ +P+ +P + K + L Q G PV++
Sbjct: 492 RVLALKVPRGSPPPGFEGPSSTAQPEHEKEVAKPATPLEQEKQPEGQKMITRPVSALEDA 551
Query: 1051 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPGLSKVLTT 1227
LPW W P L LGF+A EIQ P VIMPIT+ V LP + + H V+
Sbjct: 552 LPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------DLVMRV 605
Query: 1228 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1407
L L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT+ + + + +SV
Sbjct: 606 LEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSV 665
Query: 1408 IHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 1587
IHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P PE+ +T+ERAF
Sbjct: 666 IHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGV 725
Query: 1588 KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 1767
SP+V+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +
Sbjct: 726 SSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEV 785
Query: 1768 FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 1947
F L RYYINATHRN + LANKL VYS K+T GFQP LHLLVPSL+KK+A+ +
Sbjct: 786 FQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGE 845
Query: 1948 AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 2127
GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ S+FWE
Sbjct: 846 MGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWE 905
Query: 2128 KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKF 2307
KLEATPYLK FLS VRE+ IA VE+ + L + E + +KF
Sbjct: 906 KLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAYMEKVPEKF 965
Query: 2308 EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 2487
EREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTIS+PEAN EEF KK
Sbjct: 966 EREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYKKK 1025
Query: 2488 DLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHE 2667
D+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K ++ +K GERRQSPDF +
Sbjct: 1026 DIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEK 1085
Query: 2668 HQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIM 2847
HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I
Sbjct: 1086 HQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIK 1145
Query: 2848 INCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEG 3027
INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFEILKAK+FN+PE +I+G
Sbjct: 1146 INCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQG 1205
Query: 3028 YLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIA 3207
YLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA
Sbjct: 1206 YLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIA 1265
Query: 3208 QVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAK 3387
V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP KL ASL+L +
Sbjct: 1266 CVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQ 1325
Query: 3388 AQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3501
A +G K + NY D LAY+L D L ++LSP
Sbjct: 1326 A--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSP 1361
>dbj|BAU45634.1| RNA-dependent RNA polymerase [Hydrangea ringspot virus]
Length = 1387
Score = 1263 bits (3268), Expect = 0.0
Identities = 669/1178 (56%), Positives = 802/1178 (68%), Gaps = 11/1178 (0%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
L Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITAQR+ETK ANHLF+F
Sbjct: 196 LQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFI 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RG TP R+F Y T+P IFLP +N RTP +KT + QMF Y+KS+K+ E D++
Sbjct: 256 RGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLY 315
Query: 361 AKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQ 540
AKFRQL T +LQ P EITL+VNYF + LDS TCF+D+LSG+ ++RLL+PL ++
Sbjct: 316 AKFRQLTKTDDLQELDPKEITLVVNYFLLISRLDSVTCFDDILSGSALRRLLKPLICWME 375
Query: 541 RVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRGPPGFHNPFTKPHPVNPDD 711
++ Q GR FV+L+KAL+W IT V T +T R G + + P
Sbjct: 376 KMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGSFKALPLGNELGPGL 435
Query: 712 ADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGNT 891
+ +RA Y + T D + AE A + G L A E
Sbjct: 436 PEELRAEVARYYGNALLTGL---DETDPKAEAFALLCNNPHG-TTLFAPPSTAPEEDITH 491
Query: 892 RLGGPLLPKITPEE--QDREXXXXXXXXXXXTKASAALNQGDHTDQV-----PVNSDPAT 1050
R+ +P+ +P + K + L Q + PV++
Sbjct: 492 RVLALKVPRGSPPPGFEGPSSAAQPEHEKEVAKPATPLEQEKQPEDQKMITRPVSALEDA 551
Query: 1051 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPGLSKVLTT 1227
LPW W P L LGF+A EIQ P VIMPIT+ V LP + + H V+
Sbjct: 552 LPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------DLVMKV 605
Query: 1228 LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISV 1407
L L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT+ + + + +SV
Sbjct: 606 LEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSV 665
Query: 1408 IHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 1587
IHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P PE+ +T+ERAF
Sbjct: 666 IHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGV 725
Query: 1588 KSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTI 1767
SP+V+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +
Sbjct: 726 SSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEV 785
Query: 1768 FSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTD 1947
F L RYYINATHRN + LANKL VYS K+T GFQP LHLLVPSL+KK+A+ +
Sbjct: 786 FQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGE 845
Query: 1948 AGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWE 2127
GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ S+FWE
Sbjct: 846 MGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWE 905
Query: 2128 KLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKF 2307
KLEATPYLK FLS VRE+ IA VE+ + L + E + +KF
Sbjct: 906 KLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAYMEKVPEKF 965
Query: 2308 EREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKK 2487
EREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTIS+PEAN EEF KK
Sbjct: 966 EREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYKKK 1025
Query: 2488 DLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHE 2667
D+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K I+ +K GERRQSPDF +
Sbjct: 1026 DIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPINMLKNGERRQSPDFEK 1085
Query: 2668 HQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIM 2847
HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I
Sbjct: 1086 HQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIK 1145
Query: 2848 INCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEG 3027
INCE TP DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFEILKAK+FN+PE +I+G
Sbjct: 1146 INCEATPNDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFNIPEEIIQG 1205
Query: 3028 YLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIA 3207
YLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA
Sbjct: 1206 YLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIA 1265
Query: 3208 QVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAK 3387
V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP KL ASL+L +
Sbjct: 1266 CVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQ 1325
Query: 3388 AQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3501
A +G K + NY D LAY+L D L ++LSP
Sbjct: 1326 A--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSP 1361
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1 [Cassava common mosaic
virus]
Length = 1449
Score = 1252 bits (3239), Expect = 0.0
Identities = 668/1245 (53%), Positives = 821/1245 (65%), Gaps = 78/1245 (6%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLA--AANQP----------TITAQRL 144
L Y E GF+Y PGGHAGASY+H+Y QL WL VG + N P +TAQR+
Sbjct: 196 LQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWAVTAQRI 255
Query: 145 ETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYI 324
ETKGANHLF+FQRG TP+ R+ T Y+TVP +FLP+++N R P+ KTI QMF YI
Sbjct: 256 ETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQMFLYI 315
Query: 325 KSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLI 504
KSVK+ ERDI++K RQLI T ELQ Y P E+ LL NYF + L S E+VL+G+L
Sbjct: 316 KSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEVLAGSLF 375
Query: 505 QRLLRPLRSDIQRVLQFFRGRPSF--------------------VKLIKALDWQPITLEF 624
++L RP++S + + G+P F VK++ L + F
Sbjct: 376 KKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYVKILSCLGGWDNEMPF 435
Query: 625 PVRTV-------NTRLRGPPGFHNPFTKPHPV---------------------------- 699
RT+ N L ++ KP P
Sbjct: 436 KFRTLPGESDLSNDELGPQLSHYDTSPKPAPSAIEASEEAAALLLKTRGLVGKRRVARLR 495
Query: 700 NPDDADTMRAFREFSYTSETSTPTTIADS-LEGSAENLASH-TSLKVGHADLSTEQLRAL 873
+ D + + + T +P++ S LE + +A+ T L V + L
Sbjct: 496 SEGDPEVAACLKIKGEPTTTQSPSSSGLSVLEKELDQIATQQTKLIVQEEEREDFIKTVL 555
Query: 874 HELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPV----NSD 1041
++ P LP ++PE + R + ++T+ V N+
Sbjct: 556 NKRRKACEDKPTLP-LSPELEKRHEALKSKAESSEASKTEPRKDENYTEMVNKTLIENAK 614
Query: 1042 PATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVL 1221
A LPW W+PKLNALGFEA E Q P T +IMPITD+ K +P H ++L
Sbjct: 615 EAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQELL 670
Query: 1222 TTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAI 1401
L++L+R PT W PD RA++FTSD+KN RTGK L +E+Q+WKE QT+ D+ + +
Sbjct: 671 DLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRPVPL 730
Query: 1402 SVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 1581
SVIHGAGGSGKS ALQ LLR +PELPI+V+LPTNELR+DWL KLP N PE FRTFE+A++
Sbjct: 731 SVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEKAYL 790
Query: 1582 CSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPAT 1761
+ +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L P+T
Sbjct: 791 QTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLEPST 850
Query: 1762 TIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAF 1941
IFS+ SRYYINATHRN+K LAN LGVYS N+ LK+T+GFQP +HLLVPSL+KKAAF
Sbjct: 851 QIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKKAAF 910
Query: 1942 TDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAF 2121
++AGHK STYAGCQGITA K+QILLD++T MC++EVLYTALSRAVDSIHF+N+ SS F
Sbjct: 911 SEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTSSNF 970
Query: 2122 WEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSD 2301
WEKLEATPYLKTFLS+VREDKI E+ VE+ T L++F E L+
Sbjct: 971 WEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEFTEELAQ 1030
Query: 2302 KFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRA 2481
K EREIF E+HGHTNCVQ D+ Q SHQQAKDEALLWETIKARL IS + N EF
Sbjct: 1031 KHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHNWTEFVK 1090
Query: 2482 KKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDF 2661
KKD+GDILW NY +AM LP++ F E+LW A E+Q+TYL KS +K GERRQSPDF
Sbjct: 1091 KKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGERRQSPDF 1149
Query: 2662 HEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNN 2841
E ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD P +
Sbjct: 1150 GEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRDIYMPEH 1209
Query: 2842 IMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVI 3021
IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N+PEWV+
Sbjct: 1210 IMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHNIPEWVL 1269
Query: 3022 EGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCA 3201
EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTRF+IPEG AQ D A
Sbjct: 1270 EGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ-----DSA 1324
Query: 3202 IAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLH 3366
+ C EKPSF L+++ ++L+ KP Q G+WAEFCGYLITPKGLIKDPLKL
Sbjct: 1325 MDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIKDPLKLA 1384
Query: 3367 ASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3501
AS LAK + K + N + NY+ D KLAY LGDDL +LL+P
Sbjct: 1385 ASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELLTP 1425
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1227 bits (3174), Expect = 0.0
Identities = 657/1184 (55%), Positives = 790/1184 (66%), Gaps = 17/1184 (1%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
L Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITAQR+ETK ANHLF+F
Sbjct: 196 LQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFI 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RG TP R+F Y T+P IFLP +N RTP +KT + QMF Y+KS+K+ E D++
Sbjct: 256 RGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLY 315
Query: 361 AKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS 531
AKFRQL T +LQ P LL + E S +LSG+ ++RLL+PL
Sbjct: 316 AKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLLKPLIC 371
Query: 532 DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRGPPGFHNPFTKPHPVN 702
++++ Q GR FV+L+KAL+W IT V T +T R G + +
Sbjct: 372 WMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGSFKALPLGNELG 431
Query: 703 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASH---TSLKVGHADLSTEQ---- 861
P + +RA Y + T D + L ++ T+L H E
Sbjct: 432 PGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTLFAPHTTAPEEDITHR 491
Query: 862 ---LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPV 1032
L+ H GGP EQ++E + +G PV
Sbjct: 492 VLALKVPHGSPPPGFGGP--SSAAQPEQEKEVARPATPPEQEKQP-----EGQKMITRPV 544
Query: 1033 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPGL 1209
++ LPW W P L LGF+A EIQ P VIMPIT+ V LP + + H
Sbjct: 545 STLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------ 598
Query: 1210 SKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTA 1389
V+ L L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT+ + +
Sbjct: 599 ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEK 658
Query: 1390 NLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFE 1569
+ +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P PE+ +T+E
Sbjct: 659 TVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYE 718
Query: 1570 RAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKL 1749
RAF SP+V+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+IS+L
Sbjct: 719 RAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQL 778
Query: 1750 APATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVK 1929
APAT +F L RYYINATHRN + LANKL VYS K+T GFQP LHLLVPSL+K
Sbjct: 779 APATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLK 838
Query: 1930 KAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQ 2109
K+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+
Sbjct: 839 KSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPT 898
Query: 2110 SSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKE 2289
S+FWEKLEATPYLK FLS VRE+ IA VE+ + L + E
Sbjct: 899 HSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCALGAYME 958
Query: 2290 SLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLE 2469
+ +KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTIS+PEAN E
Sbjct: 959 KVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWE 1018
Query: 2470 EFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQ 2649
EF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K ++ +K GERRQ
Sbjct: 1019 EFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQ 1078
Query: 2650 SPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL 2829
SPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRRFR+ L
Sbjct: 1079 SPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREVL 1138
Query: 2830 SPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLP 3009
PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFEILKAK+FN+P
Sbjct: 1139 GPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAKHFNIP 1198
Query: 3010 EWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAG 3189
E +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAG
Sbjct: 1199 EEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAG 1258
Query: 3190 DDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHA 3369
DD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP KL A
Sbjct: 1259 DDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFA 1318
Query: 3370 SLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3501
SL+L +A +G K + NY D LAY+L D L ++LSP
Sbjct: 1319 SLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSP 1360
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1219 bits (3154), Expect = 0.0
Identities = 651/1177 (55%), Positives = 782/1177 (66%), Gaps = 10/1177 (0%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLAAANQPTITAQRLETKGANHLFIFQ 180
L Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITAQR+ETK ANHLF+F
Sbjct: 196 LQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHLFVFI 255
Query: 181 RGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAKERDIW 360
RG TP R+F Y T+P IFLP +N RTP +KT + QMF Y+KS+K+ E D++
Sbjct: 256 RGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTETDLY 315
Query: 361 AKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS 531
AKFRQL T +LQ P LL + E S +LSG+ ++RLL+PL
Sbjct: 316 AKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLLKPLIC 371
Query: 532 DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRGPPGFHNPFTKPHPVN 702
++++ Q GR FV+L+KAL+W IT V T +T R G + +
Sbjct: 372 WMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGSFKALPLGNELG 431
Query: 703 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASH---TSLKVGHADLSTEQLRAL 873
P + +RA Y + T D + L ++ T+L H E +
Sbjct: 432 PGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTLFAPHTTAPEEDITHR 491
Query: 874 HELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATL 1053
G P P + +G PV++ L
Sbjct: 492 VLALKVPRGSPPPGFEGPSSSAQPEQEKEVAKPATPPEQEKQPEGQKMITRPVSALENAL 551
Query: 1054 PWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPGLSKVLTTL 1230
PW W P L LGF+A EIQ P VIMPIT+ V LP + + H V+ L
Sbjct: 552 PWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------ELVMGVL 605
Query: 1231 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1410
L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT+ + + + +SVI
Sbjct: 606 EKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTVGLSVI 665
Query: 1411 HGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 1590
HG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P PE+ +T+ERAF
Sbjct: 666 HGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERAFTGVS 725
Query: 1591 SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 1770
SP+V+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+IS+LAPAT +F
Sbjct: 726 SPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAPATEVF 785
Query: 1771 SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 1950
L RYYINATHRN + LANKL VYS K+T GFQP LHLLVPSL+KK+A+ +
Sbjct: 786 QPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKSAYGEM 845
Query: 1951 GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 2130
GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ S+FWEK
Sbjct: 846 GHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHSSFWEK 905
Query: 2131 LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFE 2310
LEATPYLK FLS VRE+ IA VE+ + L + E + +KFE
Sbjct: 906 LEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAYMEKVPEKFE 965
Query: 2311 REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 2490
REIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTIS+PEAN EEF KKD
Sbjct: 966 REIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEFYKKKD 1025
Query: 2491 LGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEH 2670
+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K ++ +K GERRQSPDF +H
Sbjct: 1026 IGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSPDFEKH 1085
Query: 2671 QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMI 2850
QIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRRFR+AL PN+I I
Sbjct: 1086 QILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREALGPNHIKI 1145
Query: 2851 NCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGY 3030
NCE TP+DLSR++ NYWDF SYANDFTAFDQSQD AMLQFEILKAK+FN+P +I+GY
Sbjct: 1146 NCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFNIPGEIIQGY 1205
Query: 3031 LDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQ 3210
LDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD AIA
Sbjct: 1206 LDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDDSAIAC 1265
Query: 3211 VCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKA 3390
V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP KL ASL+L +A
Sbjct: 1266 VPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASLKLLQA 1325
Query: 3391 QKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 3501
+G K + NY D LAY+L D L ++LSP
Sbjct: 1326 --TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSP 1360
>dbj|BAJ12046.1| RNA dependent RNA polymerase [Potato virus X]
Length = 1456
Score = 1014 bits (2622), Expect = 0.0
Identities = 579/1244 (46%), Positives = 752/1244 (60%), Gaps = 78/1244 (6%)
Frame = +1
Query: 1 LTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG-------------HLAAANQP----TI 129
L Y DGF YIPG H G +Y H++ L+WL VG HL + T+
Sbjct: 195 LKYFGDGFQYIPGNHGGGAYHHEFAHLQWLKVGKIKWRDPKDSFLGHLNYTTEQVEMHTV 254
Query: 130 TAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQ 309
T Q E+ ANHL+ +RG+ LTPE RTF + YV P IFLP+ +NC+ PI K MMQ
Sbjct: 255 TVQLQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKKTMMQ 314
Query: 310 MFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVL 489
+F Y+++VK AK DI+AK RQLI + +L Y E+ LV+Y EF A L + TCF D L
Sbjct: 315 LFLYVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYMEFLADLQATTCFSDTL 374
Query: 490 SGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR---LRGP 660
SG L+ + L P+R+ IQ G + KL+KA+D+ P+ F V T + R L+
Sbjct: 375 SGGLLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHPLQAW 434
Query: 661 PGFH--------------------NPFTK--PHPVN-PDDADTMRAFREFSYTSETSTPT 771
F + FT+ + VN +D +R E E P
Sbjct: 435 KAFRPREVSDVEEMESLFSDGDLLDCFTRMPAYAVNAEEDLAAIRKAPEMDVGQEVKEPA 494
Query: 772 TIADSLEGSAE----NLASHTSLKVGHADLS--------TEQLRALHELGNTRLGGPL-- 909
+ AE L S +V H + E +RA E + + G +
Sbjct: 495 GDRNQYSNPAETFLNKLHRKHSREVKHQAVKKAKRLAEIQESMRAEGEAESNEMSGGMGA 554
Query: 910 ------LPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNS----DPATLPW 1059
LP + Q+ AS + +QV + + AT
Sbjct: 555 IPSNAELPSTSDARQELTLPTTIPVPARWEDASFT-DSSVEEEQVKLPGKEAVETATQQV 613
Query: 1060 VAWLP------KLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPGLSKV 1218
+ LP +LNA+GF+ALEIQ D S G +IMPIT+ V L K PE G K
Sbjct: 614 IEGLPWKHWIPQLNAVGFKALEIQRDRS-GTMIMPITEMVSGLEKEDFPE-----GTPKE 667
Query: 1219 LT-TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVT-AN 1392
L L ++NR P + D RAR + SDVKN R G + +W E T +++T
Sbjct: 668 LARELLAMNRSPATIPLDLLRARDYGSDVKNKRIGAITKTQAASWGEYLTGKIESLTERK 727
Query: 1393 LAISVIHGAGGSGKSQALQTLLRQ-NPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFE 1569
+A VIHGAGGSGKS A+Q LR+ I VVLPTNELRLDW KK+P+ P F+T+E
Sbjct: 728 VATCVIHGAGGSGKSHAIQKALREIGKGSDITVVLPTNELRLDWSKKVPNTEPYMFKTYE 787
Query: 1570 RAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKL 1749
+A + IVIFDDY KLP GYIEA ++ ++LVILTGD RQS +HE E+A I L
Sbjct: 788 KALIGGTGSIVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQSVYHETAEDASIRHL 847
Query: 1750 APATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVK 1929
PAT FS+ RYY+NATHRN K LAN LGVYS + +++ + G+ LVPS K
Sbjct: 848 GPATEYFSKYCRYYLNATHRNKKDLANMLGVYSERTGVTEISMSAEFLEGIPTLVPSDEK 907
Query: 1930 KAAFTDAG-HKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNA 2106
+ + G + TYAGCQG+T PKVQI+LD++T +C+ V+YTALSRA D IHFVN++A
Sbjct: 908 RRLYMGTGRNDTFTYAGCQGLTKPKVQIVLDHNTQVCSANVMYTALSRATDRIHFVNTSA 967
Query: 2107 QSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFK 2286
SSAFWEKL++TPYLKTFLS+VRE + E+ VE++ + L+++K
Sbjct: 968 NSSAFWEKLDSTPYLKTFLSVVREQALREYEPAEAEPIREPEPQTHMCVENEESVLEEYK 1027
Query: 2287 ESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANL 2466
E L +KF+REI +E+HGH+NCVQ +D T QLFSHQQAKDE LLW TI ARL S E N
Sbjct: 1028 EELLEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQETNF 1087
Query: 2467 EEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERR 2646
EF +KKD+GD+L+ NY KAM LPKE+ FS+++W CA EVQ+ YL KS + G R
Sbjct: 1088 REFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLINGTVR 1147
Query: 2647 QSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDA 2826
QSPDF E++I++FLKSQWV K+EKLG KIKPGQTIA+F Q VML+GTMARYMR FR A
Sbjct: 1148 QSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRWFRQA 1207
Query: 2827 LSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNL 3006
P + INCE TP+D+S W LN W+FS+PS AND+TAFDQSQDGAMLQFE+LKAK+ +
Sbjct: 1208 FQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCI 1267
Query: 3007 PEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYA 3186
PE +I+ Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F+IP GTAQ+YA
Sbjct: 1268 PEEIIQAYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYA 1327
Query: 3187 GDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLH 3366
GDD A+ V K SF L++++ L++KP T Q++G W EFCG+LITPKG++KDP+KLH
Sbjct: 1328 GDDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDPIKLH 1387
Query: 3367 ASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 3498
SL+LA+A K + +Y +D AY D L DL +
Sbjct: 1388 VSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDLFN 1425