BLASTX nr result
ID: Rehmannia27_contig00016431
seq
BLASTX 2.2.26 [Sep-21-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Rehmannia27_contig00016431 (2791 letters) Database: ./nr 84,704,028 sequences; 31,038,470,784 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposo... 238 e-121 gb|KYP40677.1| Retrovirus-related Pol polyprotein from transposo... 228 e-117 gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 232 e-111 gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo... 230 e-111 gb|AJY78065.1| putative polyprotein [Glycine max] 226 e-109 emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera] 223 e-109 ref|XP_009338880.1| PREDICTED: uncharacterized protein LOC103931... 214 e-108 emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera] 213 e-108 gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposo... 226 e-107 gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo... 222 e-106 ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-r... 211 e-106 gb|KYP60096.1| Retrovirus-related Pol polyprotein from transposo... 227 e-106 gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo... 221 e-106 emb|CAN81001.1| hypothetical protein VITISV_006992 [Vitis vinifera] 210 e-105 emb|CAN62906.1| hypothetical protein VITISV_043610 [Vitis vinifera] 209 e-105 gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo... 216 e-105 gb|KYP58900.1| Retrovirus-related Pol polyprotein from transposo... 223 e-105 gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposo... 207 e-104 gb|KYP44825.1| Retrovirus-related Pol polyprotein from transposo... 223 e-103 gb|KYP63559.1| Retrovirus-related Pol polyprotein from transposo... 221 e-103 >gb|KYP39497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1445 Score = 238 bits (607), Expect(2) = e-121 Identities = 123/253 (48%), Positives = 163/253 (64%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWVY++K K DG+VD+ KARLVAKGF Q G+DY FSPVAKL TVR ++ALA+ Sbjct: 978 GCKWVYRIKYKADGSVDRHKARLVAKGFTQTEGIDYFETFSPVAKLTTVRFLLALASTNN 1037 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 L QLDV+N FLHG L+E++YM P +G VC L++SLYGLKQASR WN + + Sbjct: 1038 WFLHQLDVDNAFLHGDLEEEVYMRPPQGLQLPDSKLVCKLEKSLYGLKQASRNWNQKLNS 1097 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 +L G+ QS+ DH LF++K +S +G SEI +K++L F IKD Sbjct: 1098 ELLHLGYKQSSADHSLFIKKQGSSITILLVYVDDVVLSGNNFSEIQIVKQHLHQKFQIKD 1157 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L +FLG+E+ RS LNQRKY +++ ++G++ SK APTP P IKL + G+ L Sbjct: 1158 LGPLKFFLGLEVARSKKGIILNQRKYCLELIDESGLLGSKPAPTPADPAIKLHADHGSLL 1217 Query: 721 EDPERYRRLIGML 759 DP +RRLIG L Sbjct: 1218 NDPTSFRRLIGRL 1230 Score = 227 bits (578), Expect(2) = e-121 Identities = 108/189 (57%), Positives = 138/189 (73%) Frame = +3 Query: 744 PNWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCL 923 P+ AA+ ++RYLKG P +GLFY A N L ++A+ D+DW +C+ T KS+ GYCVFLG L Sbjct: 1257 PHLQAALRIVRYLKGAPGLGLFYPAENHLRIQAFSDSDWATCSTTRKSVTGYCVFLGKSL 1316 Query: 924 VSWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHI 1103 VSWK+KKQ+TVSRSS+EAEYRAL S+ CELQWL FLS L + +P P +++ D+Q+AI I Sbjct: 1317 VSWKSKKQSTVSRSSSEAEYRALASLTCELQWLKFLSDSLFVKIPAPFSVFSDSQSAIQI 1376 Query: 1104 VKNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKL 1283 KNP FHERTKH+E+D HL+R ++ L L HV S QLAD FTKSL F SKL Sbjct: 1377 AKNPTFHERTKHIEVDCHLIRIKLQEELLHLIHVPSANQLADAFTKSLYPKLFLHAISKL 1436 Query: 1284 GLFDLHNPT 1310 GL ++H PT Sbjct: 1437 GLSNIHGPT 1445 Score = 143 bits (361), Expect = 3e-31 Identities = 96/348 (27%), Positives = 171/348 (49%), Gaps = 12/348 (3%) Frame = +3 Query: 1698 DPLKLYSSDHPCLSIVTSQLTGNNYLSWRRSMLIALGAKTKLGFINEKIEIPEDDSPKYD 1877 +PL L+ ++P L +VT L+ NN+ W+ ML+AL K K F+ + P P + Sbjct: 18 NPLFLHPGENPALILVTPLLSDNNFPQWKHDMLVALETKNKDQFVLGTLTCPNLSDPLHK 77 Query: 1878 QWRKVDCMVISWILNSIKDLV-DVFIYCNSAKELWDDIAKRFGDCNGPMIYQLERDIVNM 2054 W + + MV+SW+ +S+ + ++ SA E+W D+ RF + I L+ ++ N Sbjct: 78 AWCRCNKMVMSWLAHSMTPSIRQSVMWIESASEIWRDLCDRFSHGDKFRIADLQEELQNC 137 Query: 2055 NQGGLSVVEYFTKLKRLWDEL-------ACIMPLPICEGETRRLIDERDMNRKLMQFLMG 2213 QG L+V +Y+T+L+ LW EL AC P+ G ++ ERD + +++FL G Sbjct: 138 KQGELTVSQYYTRLRILWKELSIYRTVLACSCPVACSCGIFSKIQKERD-DDCVIKFLRG 196 Query: 2214 LHESYDQVHNQLLLMDPLPTVDKAYSMVLRVGKQCNVHLLYRDSSENAAMSTMINNFGQR 2393 L++ + QV +Q++LM+P+P + + +S+VL+ ++ + E+AA++T ++ + Sbjct: 197 LNDEFSQVRSQVMLMEPMPGLTRTFSLVLQQEREFGGPVP-PIPQESAALATFNDDSARN 255 Query: 2394 NPE-RGNYV---GGLNSGRGNSVGGWNTNXXXXXXXXXXXXXXXXXXXTKEEKSKLVCDH 2561 N RG + GG SGRGN+ G +S C Sbjct: 256 NSSTRGGFSNTRGGGRSGRGNNTG----------------------------RSTRFCTK 287 Query: 2562 CDMSGHERAKCFKLHGYPDWYKQLREERGRMLANSVHNEFAESGNCDS 2705 C + H CF+++G+P Y+ G+ + + + + N DS Sbjct: 288 CKKTNHTIDTCFQIYGFPPGYR----TNGKSTSTTSNTSKSSVNNFDS 331 >gb|KYP40677.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 810 Score = 228 bits (581), Expect(2) = e-117 Identities = 104/189 (55%), Positives = 141/189 (74%) Frame = +3 Query: 744 PNWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCL 923 P+ AA+ ++RYLKG P +GLFYS+ NPL ++A+ D+DW +CA T +S+ GYCVF+G+ L Sbjct: 622 PHMQAALRIVRYLKGAPGLGLFYSSTNPLKIQAFSDSDWATCATTRRSVTGYCVFIGNSL 681 Query: 924 VSWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHI 1103 +SWK+KKQ+TVSRSS+EAEYRAL S+ CELQWL +L + + +P P + D+Q+AI I Sbjct: 682 ISWKSKKQSTVSRSSSEAEYRALASLTCELQWLKYLCDSMHIKIPTPFATFSDSQSAIQI 741 Query: 1104 VKNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKL 1283 KNP FHERTKH+E+D HL+R ++G L L HV S QLAD FTK+L PF SKL Sbjct: 742 SKNPTFHERTKHIEVDCHLIRIKIQEGLLHLIHVLSANQLADAFTKALFPKPFHTAISKL 801 Query: 1284 GLFDLHNPT 1310 GL ++++PT Sbjct: 802 GLLNIYHPT 810 Score = 224 bits (570), Expect(2) = e-117 Identities = 115/253 (45%), Positives = 161/253 (63%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWVY+ K K +GTV++ KARLVAKGF Q G+DY FSPVAK+ ++R ++ALA+ Sbjct: 343 GCKWVYRTKHKANGTVERYKARLVAKGFTQTEGIDYFETFSPVAKITSIRFLLALASSHN 402 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 + QLD++N FLHG LDE++YM P +G VC L++SLYGLKQASR WN + + Sbjct: 403 WFIHQLDIDNAFLHGDLDEEVYMRPPQGLRLPSSKLVCKLEKSLYGLKQASRNWNQKLTS 462 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 +L G+ QS DH LF+ + +S +G ++EI ++K +L + F IKD Sbjct: 463 ELTLMGYKQSFADHSLFVNFTGSSITILLIYVDDIVLSGNDMTEIKKVKAHLHNKFHIKD 522 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L +FLG+E+ RS LNQRKY +++ +TG++ K APTP P +KL + G+ L Sbjct: 523 LGSLKFFLGLEVARSKKGILLNQRKYCLELIDETGLLGCKPAPTPADPAMKLHVDHGDLL 582 Query: 721 EDPERYRRLIGML 759 DP +RRLIG L Sbjct: 583 HDPTVFRRLIGRL 595 >gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1376 Score = 232 bits (591), Expect(2) = e-111 Identities = 123/253 (48%), Positives = 160/253 (63%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GC+W+YK+K DG++++ KARLVAKG+ QV G+DYL FSPVAKL TVR+++ALA + Sbjct: 903 GCRWIYKIKYNADGSIERYKARLVAKGYTQVEGLDYLATFSPVAKLTTVRLLLALAAVFD 962 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 L QLDVNN FLHG L+E++YMT G +VC LQ+SLYGLKQASRQW A+ + Sbjct: 963 WHLKQLDVNNAFLHGDLNEEVYMTLPLGMRPEYSNQVCKLQKSLYGLKQASRQWFAKLSS 1022 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 L G+ QSA DH LF++ S +S G +SEI + LD F IKD Sbjct: 1023 FLIHHGYHQSASDHSLFMKFSSSSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKIKD 1082 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L YFLG+E+ R+ L+QRKY++DI D GMM S+ TP+ +L + G PL Sbjct: 1083 LGNLKYFLGLEVARNKSGIHLSQRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGTPL 1142 Query: 721 EDPERYRRLIGML 759 DP YRRL+G L Sbjct: 1143 ADPSSYRRLLGRL 1155 Score = 202 bits (514), Expect(2) = e-111 Identities = 97/189 (51%), Positives = 135/189 (71%) Frame = +3 Query: 738 SSPNWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGS 917 S+ + A +LRYLK P GLF+ ++ LHL+A+ D+DW C T +SI G+ V+LG Sbjct: 1180 STAHSQAIFRILRYLKQAPGSGLFFPTNSSLHLKAFSDSDWAGCLDTRRSITGFSVYLGD 1239 Query: 918 CLVSWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAI 1097 L+SW++KKQ TVSRSS+EAEYRAL + ELQWL++L DL + + P L+CDNQ+A+ Sbjct: 1240 SLISWRSKKQPTVSRSSSEAEYRALATTTSELQWLTYLLHDLHVPVHQPALLYCDNQSAL 1299 Query: 1098 HIVKNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFS 1277 HI N VFHERTKH++ID HLVR + G L+L V+S QLAD FTKSL+ + F+ ++S Sbjct: 1300 HIAANQVFHERTKHIDIDCHLVREKLQSGLLKLLPVASPHQLADIFTKSLSPSMFTALYS 1359 Query: 1278 KLGLFDLHN 1304 KLG+ +L++ Sbjct: 1360 KLGMLNLYS 1368 Score = 143 bits (361), Expect = 3e-31 Identities = 92/308 (29%), Positives = 149/308 (48%), Gaps = 10/308 (3%) Frame = +3 Query: 1734 LSIVTSQLTGNNYLSWRRSMLIALGAKTKLGFINEKIEIPEDDSPKYDQWRKVDCMVISW 1913 +++V+ L NY SW RSML AL AK K+ F++ P Y W++ + MV+SW Sbjct: 1 MALVSPSLDSTNYHSWSRSMLTALSAKNKVEFVDGSAPQPPSSDRIYSAWKRCNNMVVSW 60 Query: 1914 ILNSIK-DLVDVFIYCNSAKELWDDIAKRFGDCNGPMIYQLERDIVNMNQGGLSVVEYFT 2090 ++ S+ + ++ +SA+E+W D+ R+ + I L+ + ++ QG LSV +YFT Sbjct: 61 LVPSVSFSIRQSILWMDSAEEIWRDLKSRYSQGDLLRISALQLEASSIKQGDLSVTDYFT 120 Query: 2091 KLKRLWDELACIMPLPICE------GETRRLIDERDMNRKLMQFLMGLHESYDQVHNQLL 2252 +L+ +WDEL P PIC + ++ +R + + MQFL GL++ Y V + +L Sbjct: 121 QLRIIWDELENFRPDPICVCIVKCICKVSSILAQRKLEDQAMQFLRGLNDQYANVRSHVL 180 Query: 2253 LMDPLPTVDKAYSMVLRVGKQCNVH---LLYRDSSENAAMSTMINNFGQRNPERGNYVGG 2423 LMDPLP ++K +S V + +Q V ++ NAA+ NF RN G Sbjct: 181 LMDPLPPINKIFSYVAQQERQFAVSDSLAEVKNGFANAAIMNSTCNFCGRN-------GH 233 Query: 2424 LNSGRGNSVGGWNTNXXXXXXXXXXXXXXXXXXXTKEEKSKLVCDHCDMSGHERAKCFKL 2603 S G + N + + K C HC +GH C+K Sbjct: 234 TESTCYRKHGFPDKN-----------------GKSSSNRGK-ACSHCGKNGHTVDTCYKK 275 Query: 2604 HGYPDWYK 2627 HG+P ++ Sbjct: 276 HGFPPGHR 283 >gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan] Length = 1002 Score = 230 bits (586), Expect(2) = e-111 Identities = 123/255 (48%), Positives = 159/255 (62%), Gaps = 2/255 (0%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWV+K+K DGT+++ KARLVAKG+ Q +DYL FSPV K+ TVR ++A+AT K Sbjct: 528 GCKWVFKLKFNSDGTIERHKARLVAKGYTQTETLDYLDTFSPVVKMTTVRTLLAVATAKN 587 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKA--KPGEVCHLQRSLYGLKQASRQWNAEF 354 + QLDVN TFLHG L E++YMTP G + + VC L +SLYGLKQASRQWNA+ Sbjct: 588 WHIHQLDVNTTFLHGDLHEEVYMTPPPGLTVSPHQSNCVCKLVKSLYGLKQASRQWNAKL 647 Query: 355 CTKLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTI 534 + L GF QS D+ LF ++ F G +EI+ +K LD FTI Sbjct: 648 TSVLIDSGFKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTI 707 Query: 535 KDLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGN 714 KDL YFLGME+ RS+ AL QRKY +D+ DTG++ SK +P+ +KL G Sbjct: 708 KDLGQLKYFLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGT 767 Query: 715 PLEDPERYRRLIGML 759 PL DP +YRRL+G L Sbjct: 768 PLTDPTQYRRLLGRL 782 Score = 204 bits (519), Expect(2) = e-111 Identities = 95/186 (51%), Positives = 131/186 (70%) Frame = +3 Query: 747 NWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLV 926 ++ AA+ +L+Y+K P GLF+ + + L L+ Y D+DW SC+ T +S+ G+ FLG L+ Sbjct: 810 HYQAALRILKYVKNAPGKGLFFPSSSDLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALI 869 Query: 927 SWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIV 1106 SWK+KKQ TVS+SSAEAEYRAL CE QWLS+L D L P+ L+CDNQ+A+HI Sbjct: 870 SWKSKKQATVSKSSAEAEYRALAQSTCEAQWLSYLLHDFGLHSFHPIVLFCDNQSALHIA 929 Query: 1107 KNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLG 1286 NPVFHERTK++E+D H+VR + G + L +S+ QLAD FTK+L+ PF I KLG Sbjct: 930 SNPVFHERTKNIELDCHIVREKLQVGLIHLLPISTADQLADVFTKALSLRPFEQIIFKLG 989 Query: 1287 LFDLHN 1304 +FD+H+ Sbjct: 990 MFDIHS 995 >gb|AJY78065.1| putative polyprotein [Glycine max] Length = 523 Score = 226 bits (575), Expect(2) = e-109 Identities = 119/253 (47%), Positives = 153/253 (60%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWVYKVK K +G +++ KARLVAKG++QV G+DY FSPVAK+ TVR ++A+A +K Sbjct: 51 GCKWVYKVKHKANGQIERYKARLVAKGYNQVEGIDYFETFSPVAKITTVRTLLAVAAIKN 110 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 L QLDVNN FLHG L ED+YM +G AKP VC LQ+SLYGLKQASR+W + Sbjct: 111 WHLHQLDVNNAFLHGDLQEDVYMKIPDGVTCAKPNSVCKLQKSLYGLKQASRKWYEKLTN 170 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 L + G+ QS D+ LF +F G I E D +K LD F IK+ Sbjct: 171 LLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDSIDEFDRIKNVLDLAFKIKN 230 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L YFLG+E+ S ++QRKY +D+ D+G++ K A TPL IKL G P Sbjct: 231 LGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKPASTPLDTSIKLHSAAGTPY 290 Query: 721 EDPERYRRLIGML 759 D YRR++G L Sbjct: 291 ADISGYRRIVGKL 303 Score = 202 bits (513), Expect(2) = e-109 Identities = 101/186 (54%), Positives = 127/186 (68%) Frame = +3 Query: 747 NWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLV 926 +++AA +LRYLK P G+F+S + + L Y DADW C + KSI GYC F+G LV Sbjct: 331 HFNAACRVLRYLKNNPGQGIFFSRTSEMQLIGYSDADWAGCMDSRKSISGYCFFIGKSLV 390 Query: 927 SWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIV 1106 SW+ KKQ TVSRSS+EAEYRAL S CELQWL +L DL + L TL+CDNQ+A+HI Sbjct: 391 SWRAKKQATVSRSSSEAEYRALSSAACELQWLLYLFADLRVQLTRTPTLYCDNQSAVHIA 450 Query: 1107 KNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLG 1286 NPVFHERTKHLEID HLVR G L+L VS+ Q+ADF TK+LA F SKL Sbjct: 451 SNPVFHERTKHLEIDCHLVREKLLKGTLKLLPVSTSDQVADFLTKALAPPKFHDFVSKLS 510 Query: 1287 LFDLHN 1304 + ++++ Sbjct: 511 MINIYH 516 >emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera] Length = 1288 Score = 223 bits (568), Expect(2) = e-109 Identities = 120/253 (47%), Positives = 158/253 (62%), Gaps = 4/253 (1%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWVYK K K DGT+++ KARLVAKG+ Q G+DY+ FSPVAKLVTV++++A+A +KG Sbjct: 838 GCKWVYKXKHKXDGTIERYKARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKG 897 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCK----AKPGEVCHLQRSLYGLKQASRQWNA 348 L QLDVNN FLHG L+E++YM GY + VC L +SLYGLKQASRQW + Sbjct: 898 WHLSQLDVNNAFLHGDLNEEVYMKLPPGYNRKGESLPSNXVCLLHKSLYGLKQASRQWFS 957 Query: 349 EFCTKLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLF 528 +F T + GFSQS DH LF++ D F I +LK L+ LF Sbjct: 958 KFSTAIMGLGFSQSPSDHSLFIKNVDGLFIAJLVYVDDVIIASNNQGAIADLKSELNKLF 1017 Query: 529 TIKDLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNE 708 +KDL YFLG+E+ +S+ ++QRKY++D+ D G + KAA TP+ +KL +E Sbjct: 1018 KLKDLGDVKYFLGLEIAKSSTGICVSQRKYVLDLLSDFGYLGCKAASTPMEANVKLSMDE 1077 Query: 709 GNPLEDPERYRRL 747 G L D YRRL Sbjct: 1078 GVDLPDVSLYRRL 1090 Score = 202 bits (515), Expect(2) = e-109 Identities = 95/189 (50%), Positives = 133/189 (70%) Frame = +3 Query: 744 PNWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCL 923 P+ AA +LRYLKG P +GLF+ +++ L L AY D+DW C + +S+ G+CVFLG+ L Sbjct: 1100 PHLHAAQRILRYLKGNPGMGLFFPSNSELRLMAYTDSDWARCPDSRRSVTGFCVFLGNSL 1159 Query: 924 VSWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHI 1103 VSWK+KKQ+ VSRSSAEAEYRA+ + CE+ WL L +D + P L+CDNQ+A+H+ Sbjct: 1160 VSWKSKKQHIVSRSSAEAEYRAMANTSCEITWLLALLKDFGIDHSAPALLFCDNQSALHM 1219 Query: 1104 VKNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKL 1283 +NPVFHERTKH+EID HLVR+ + G L+ VS+ QLAD TK+L + F + K+ Sbjct: 1220 AENPVFHERTKHIEIDCHLVRDKVQSGVLKPMFVSTEHQLADXLTKALHPSSFKLLIGKM 1279 Query: 1284 GLFDLHNPT 1310 GL ++ +P+ Sbjct: 1280 GLKNIFSPS 1288 Score = 117 bits (294), Expect = 3e-23 Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 1/236 (0%) Frame = +3 Query: 1662 LNTGAIESEYDDDPLKLYSSDHPCLSIVTSQLTGNNYLSWRRSMLIALGAKTKLGFINEK 1841 +N+ + E P L++ DHP L++V++ LTG NY +WR +ML+AL AK K+GF++ Sbjct: 15 VNSEIVVVEDSSSPYFLHNGDHPGLNLVSNLLTGANYHTWRXAMLMALTAKNKVGFVDGT 74 Query: 1842 IEIPEDDSPKYDQWRKVDCMVISWILNSI-KDLVDVFIYCNSAKELWDDIAKRFGDCNGP 2018 I P Y W + + M+ SWI+N++ +++ D +Y +SA ++W D+ RF Sbjct: 75 ISRPMSHDLIYGAWNRCNSMISSWIINAVSREIADSLLYLDSACDIWRDLNDRFNQV--- 131 Query: 2019 MIYQLERDIVNMNQGGLSVVEYFTKLKRLWDELACIMPLPICEGETRRLIDERDMNRKLM 2198 + GGL R+W + ++ Sbjct: 132 -----------CHCGGL----------RVWTDY--------------------QHREYVL 150 Query: 2199 QFLMGLHESYDQVHNQLLLMDPLPTVDKAYSMVLRVGKQCNVHLLYRDSSENAAMS 2366 QFLMGL++SY Q+ Q+L+MDPLP ++K +S+V++ V Y S + M+ Sbjct: 151 QFLMGLNDSYAQIRGQILMMDPLPAINKVFSLVIQEEXHRTVGYSYSGSHNSDPMT 206 >ref|XP_009338880.1| PREDICTED: uncharacterized protein LOC103931184 [Pyrus x bretschneideri] Length = 1143 Score = 214 bits (545), Expect(2) = e-108 Identities = 109/253 (43%), Positives = 156/253 (61%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWV+K+K DGT+++ KARLVAKGF Q G+DY F+PVAKL+TVR ++ +A ++ Sbjct: 676 GCKWVFKIKYHSDGTIERYKARLVAKGFTQREGIDYKETFAPVAKLITVRCLLTVAAVRH 735 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 P Q+DV N FLHG L E++YM P GY + VC L++SLYGLKQASR W +F + Sbjct: 736 WPFHQMDVQNAFLHGELHEEVYMLPPPGYRRQGERVVCRLKKSLYGLKQASRSWFQKFSS 795 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 + GF QS D+ LF + +S TG I++LK++L F IKD Sbjct: 796 AIHDIGFIQSRADYSLFTKVYGSSITIVLLYVDDMVITGNNDGAINDLKQFLSRCFRIKD 855 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L YFLG+E+ RS A++QRKY +DI + G++ +K + P+ P + L + L Sbjct: 856 LGPLKYFLGVEVARSKAGIAISQRKYTLDILEEAGLLGAKPSKVPMEPDLVLLPTGSDLL 915 Query: 721 EDPERYRRLIGML 759 +DP +YR+++G L Sbjct: 916 KDPTQYRQMVGKL 928 Score = 210 bits (535), Expect(2) = e-108 Identities = 97/186 (52%), Positives = 129/186 (69%) Frame = +3 Query: 753 DAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLVSW 932 DAA LLRYLK P GL +S+ + L+L YCDADW C T +S+ GYC+FLG+ L+SW Sbjct: 958 DAAHRLLRYLKNAPGQGLLFSSQSKLNLTGYCDADWARCPITRRSVTGYCIFLGNSLISW 1017 Query: 933 KTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIVKN 1112 K+KKQ TV+RSSAEAEYR++ + CEL WL +L +DL + P P L+CDNQAA+HI N Sbjct: 1018 KSKKQVTVARSSAEAEYRSMAAATCELTWLRYLLKDLQIIHPNPAKLFCDNQAALHIAVN 1077 Query: 1113 PVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLGLF 1292 PVFHERTKH+E+D H +R + G ++ ++ + Q+AD FTK L F + KLG+ Sbjct: 1078 PVFHERTKHIELDCHTIRERIQRGEIKTAYIHTGEQVADMFTKPLRSPAFHLLLCKLGVL 1137 Query: 1293 DLHNPT 1310 D+H PT Sbjct: 1138 DIHAPT 1143 Score = 174 bits (440), Expect = 7e-41 Identities = 103/311 (33%), Positives = 159/311 (51%), Gaps = 1/311 (0%) Frame = +3 Query: 1698 DPLKLYSSDHPCLSIVTSQLTGNNYLSWRRSMLIALGAKTKLGFINEKIEIPEDDSPKYD 1877 DPL L+ SD P L +V+ L G+NY W RSM IAL AK KLGFI+ I+ P K+ Sbjct: 15 DPLTLHHSDSPSLVLVSQLLDGHNYGQWSRSMRIALSAKNKLGFIDGSIKCPAITDAKFS 74 Query: 1878 QWRKVDCMVISWILNSIK-DLVDVFIYCNSAKELWDDIAKRFGDCNGPMIYQLERDIVNM 2054 W++ + MV+SWI S++ ++ +YC SA W D+ RF N IYQ+ ++IV Sbjct: 75 IWQRCNDMVLSWIWQSVQGNIARSILYCKSASAAWKDLEDRFSQGNDSRIYQIRQEIVEH 134 Query: 2055 NQGGLSVVEYFTKLKRLWDELACIMPLPICEGETRRLIDERDMNRKLMQFLMGLHESYDQ 2234 QG LS+ +Y+T+LK LWDELA C+ E + R+ K+MQFLMGL+E+Y Sbjct: 135 RQGQLSISDYYTQLKALWDELASYYEPITCDCEGSKTRVAREEKEKVMQFLMGLNETYST 194 Query: 2235 VHNQLLLMDPLPTVDKAYSMVLRVGKQCNVHLLYRDSSENAAMSTMINNFGQRNPERGNY 2414 + +L+M+PLP + + +VL+ +Q +V +R+ + +A + P+ G+ Sbjct: 195 IRGSILMMNPLPDTRRVHGLVLQHERQIDV-ANHREPAAHA-----MQTHRSTTPKGGSV 248 Query: 2415 VGGLNSGRGNSVGGWNTNXXXXXXXXXXXXXXXXXXXTKEEKSKLVCDHCDMSGHERAKC 2594 G +S + + C +CD S H +C Sbjct: 249 PGSSSSRKASK-----------------------------------CSYCDGS-HSVERC 272 Query: 2595 FKLHGYPDWYK 2627 + L G+P+ +K Sbjct: 273 YFLIGFPEGHK 283 >emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera] Length = 1461 Score = 213 bits (541), Expect(2) = e-108 Identities = 119/254 (46%), Positives = 154/254 (60%), Gaps = 1/254 (0%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWVYK+K DGTV++ KARLVAKGF Q G+DY FSPVAKL TVR ++A+A ++ Sbjct: 993 GCKWVYKIKYNSDGTVERYKARLVAKGFTQREGIDYKETFSPVAKLTTVRCLLAIAAVRH 1052 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMT-PLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFC 357 L Q+DV N FLHG L E++YM PL + + VC L +SLYGLKQASR W +F Sbjct: 1053 WSLHQMDVQNAFLHGDLLEEVYMQLPLGFRQQGETPMVCRLNKSLYGLKQASRSWFRKFS 1112 Query: 358 TKLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIK 537 +QQ GF QS D+ LF + S SF TG + I LK L F IK Sbjct: 1113 ATIQQDGFHQSRADYSLFTKISGNSFTAVLIYVDDMIITGNDENVIAALKESLHTKFRIK 1172 Query: 538 DLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNP 717 DL YFLG+E+ RS D +++QRKY +DI + G++ +K TP+ KL G+ Sbjct: 1173 DLGQLRYFLGIEVARSTDGISISQRKYTLDILDEAGLLGAKPLSTPMEENNKLLPTVGDL 1232 Query: 718 LEDPERYRRLIGML 759 L++P YRRL+G L Sbjct: 1233 LKNPSTYRRLVGQL 1246 Score = 209 bits (533), Expect(2) = e-108 Identities = 99/189 (52%), Positives = 126/189 (66%) Frame = +3 Query: 744 PNWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCL 923 P+ A HLLRYLKG P GL++ A L L +CDADW C+ T +S+ GYC+FL Sbjct: 1273 PHLHAVHHLLRYLKGAPGQGLYFPAKGNLLLRGFCDADWARCSITRRSVTGYCIFLXGAX 1332 Query: 924 VSWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHI 1103 +SWKTKKQ TVSRSS E+EYRA+ S+ CEL WL +L DL + P L+CD++AA+HI Sbjct: 1333 ISWKTKKQTTVSRSSXESEYRAMASITCELTWLRYLLDDLKVEHSQPAKLFCDSKAALHI 1392 Query: 1104 VKNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKL 1283 NPV+HERTKH+EID H+VR + G + HV S QLAD FTK L + F + SK Sbjct: 1393 AANPVYHERTKHIEIDCHVVRERIQSGAIVTAHVPSSCQLADLFTKPLNSSIFHSLLSKF 1452 Query: 1284 GLFDLHNPT 1310 G+ D+H PT Sbjct: 1453 GVLDIHAPT 1461 Score = 147 bits (372), Expect = 1e-32 Identities = 99/335 (29%), Positives = 146/335 (43%), Gaps = 1/335 (0%) Frame = +3 Query: 1626 MATNRRNLNWSVLNTGAIESEYDDDPLKLYSSDHPCLSIVTSQLTGNNYLSWRRSMLIAL 1805 M N+ L S T A+ DP L+ SDHP + +V+ + G+NY +W R+M I+L Sbjct: 58 MDANKTGLTSSKATTEAL------DPFSLHHSDHPGMVLVSKVIEGDNYSTWSRAMRISL 111 Query: 1806 GAKTKLGFINEKIEIPEDDSPKYDQWRKVDCMVISWILNSIKDLVDVFIYCNSAKELWDD 1985 AK K+GF+ I+ P + W++ CN + Sbjct: 112 SAKDKIGFVTGSIKPPSSTDDSFPSWQR----------------------CNDMHQKSGQ 149 Query: 1986 IAKR-FGDCNGPMIYQLERDIVNMNQGGLSVVEYFTKLKRLWDELACIMPLPICEGETRR 2162 I + F N IYQ++RDIV QG S+ Y+TKLK WDEL+ + C Sbjct: 150 ICENVFRQGNDSRIYQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYHEVLSCSCGGLE 209 Query: 2163 LIDERDMNRKLMQFLMGLHESYDQVHNQLLLMDPLPTVDKAYSMVLRVGKQCNVHLLYRD 2342 + ERD ++MQFLMGL++SY + Q+LLM PLP + YS+VL+ KQ V L Sbjct: 210 KLKERDEKERVMQFLMGLNDSYAAIRGQILLMHPLPDTRRVYSLVLQQEKQVEVSL---- 265 Query: 2343 SSENAAMSTMINNFGQRNPERGNYVGGLNSGRGNSVGGWNTNXXXXXXXXXXXXXXXXXX 2522 N + +Y + + R N Sbjct: 266 ----------------NNGNKNHY--AMLADRDNKA--------------------TSAH 287 Query: 2523 XTKEEKSKLVCDHCDMSGHERAKCFKLHGYPDWYK 2627 +++K+ L C +CD H KC+ LHG+P +K Sbjct: 288 QVQKQKTPLHCSYCDRDYHSIEKCYYLHGFPIGHK 322 >gb|KHN05285.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja] Length = 1346 Score = 226 bits (575), Expect(2) = e-107 Identities = 119/253 (47%), Positives = 153/253 (60%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWVYKVK K +G +++ KARLVAKG++QV G+DY FSPVAK+ TVR ++A+A +K Sbjct: 900 GCKWVYKVKHKANGQIERYKARLVAKGYNQVEGIDYFETFSPVAKITTVRTLLAVAAIKN 959 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 L QLDVNN FLHG L ED+YM +G AKP VC LQ+SLYGLKQASR+W + Sbjct: 960 WHLHQLDVNNAFLHGDLQEDVYMKIPDGVTCAKPNSVCKLQKSLYGLKQASRKWYEKLTN 1019 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 L + G+ QS D+ LF +F G I E D +K LD F IK+ Sbjct: 1020 LLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDSIDEFDRIKNVLDLAFKIKN 1079 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L YFLG+E+ S ++QRKY +D+ D+G++ K A TPL IKL G P Sbjct: 1080 LGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKPASTPLDTSIKLHSAAGTPY 1139 Query: 721 EDPERYRRLIGML 759 D YRR++G L Sbjct: 1140 ADISGYRRIVGKL 1152 Score = 193 bits (491), Expect(2) = e-107 Identities = 96/167 (57%), Positives = 117/167 (70%) Frame = +3 Query: 747 NWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLV 926 +++AA +LRYLK P G+F+S + + L Y DADW C + KSI GYC F+G LV Sbjct: 1180 HFNAACRVLRYLKNNPGQGIFFSRTSEMQLIGYSDADWAGCMDSRKSISGYCFFIGKSLV 1239 Query: 927 SWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIV 1106 SW+ KKQ TVSRSS+EAEYRAL S CELQWL +L DL + L TL+CDNQ+A+HI Sbjct: 1240 SWRAKKQATVSRSSSEAEYRALSSAACELQWLLYLFADLRVQLTRTPTLYCDNQSAVHIA 1299 Query: 1107 KNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSL 1247 NPVFHERTKHLEID HLVR G L+L VS+ Q+ADF TK+L Sbjct: 1300 SNPVFHERTKHLEIDCHLVREKLLKGTLKLLPVSTSDQVADFLTKAL 1346 Score = 134 bits (337), Expect = 2e-28 Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 8/295 (2%) Frame = +3 Query: 1755 LTGNNYLSWRRSMLIALGAKTKLGFINEKIEIPEDD-SPKYDQWRKVDCMVISWILNSIK 1931 L G+NY SW RS+ ALGAK K F++ I +P D P + W + + ++ SWILNS++ Sbjct: 1 LDGSNYHSWARSLRRALGAKLKFEFLDGTIPMPVDAFDPSFRAWNRCNMLIHSWILNSVE 60 Query: 1932 DLVD-VFIYCNSAKELWDDIAKRFGDCNGPMIYQLERDIVNMNQGGLSVVEYFTKLKRLW 2108 + ++ ++A ++W D+ +RF + + +++++I + QG SV +++ LK LW Sbjct: 61 PSISRSIVFMDNASDVWLDLKERFSQGDLVRVSEIQQEIYALTQGTRSVTTFYSDLKALW 120 Query: 2109 DELACIMPLPICEGETRRLIDERDMNRK------LMQFLMGLHESYDQVHNQLLLMDPLP 2270 +EL MP+P C R D + R+ +M+FL GL++ ++ V +Q+LL++PLP Sbjct: 121 EELEIYMPIPNCTCHHRCSCDAMRLARRHHHTLHVMRFLTGLNDEFNAVKSQILLIEPLP 180 Query: 2271 TVDKAYSMVLRVGKQCNVHLLYRDSSENAAMSTMINNFGQRNPERGNYVGGLNSGRGNSV 2450 ++ K +SMV++ +Q V L D S+ ++ + G N GR NS Sbjct: 181 SITKIFSMVIQFERQNCVPNL--DDSKALVNASTSKSQGSAN------------GRSNS- 225 Query: 2451 GGWNTNXXXXXXXXXXXXXXXXXXXTKEEKSKLVCDHCDMSGHERAKCFKLHGYP 2615 SK C +C + H CF+ HG P Sbjct: 226 -----------------------------GSKRYCTYCHKTNHFVENCFQKHGVP 251 >gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1423 Score = 222 bits (566), Expect(2) = e-106 Identities = 112/253 (44%), Positives = 158/253 (62%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GC+WV+KVK DG+V++ KARLVAKGF Q+ G+DY+ FSPV ++ T+R+ +A+A Sbjct: 948 GCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIAAASN 1007 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 + QLD+N FLHG L E++YM P G + P +VC LQ+SLYGLKQASRQWN + Sbjct: 1008 WSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLYGLKQASRQWNIKLTE 1067 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 L+ FGF QS D+ LF ++++ F +G +EI ++KR LD F+IKD Sbjct: 1068 TLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKD 1127 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L YFLG+E RS ++ QRKY +++ DTG++ SK TP+ +L + + Sbjct: 1128 LGQLSYFLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLY 1187 Query: 721 EDPERYRRLIGML 759 DP YRRL+G L Sbjct: 1188 SDPSSYRRLVGRL 1200 Score = 194 bits (493), Expect(2) = e-106 Identities = 96/191 (50%), Positives = 129/191 (67%) Frame = +3 Query: 738 SSPNWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGS 917 ++ ++ AA +LRY+K TP+ GLF+ + + L L Y D+DW +C + +SI G+C FLG+ Sbjct: 1225 NNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFLGN 1284 Query: 918 CLVSWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAI 1097 LVSWK+KKQN VSRSS+EAEYRAL VCE QWL L D L +P++L+CDNQ+A+ Sbjct: 1285 ALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQSAL 1344 Query: 1098 HIVKNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFS 1277 +I NPVFHERTKH+EID H VR+ + GF+ L ++S QLAD TK L F Sbjct: 1345 YIAANPVFHERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQLADILTKPLLPKMFQDFVC 1404 Query: 1278 KLGLFDLHNPT 1310 KLGL + P+ Sbjct: 1405 KLGLSNFTTPS 1415 Score = 161 bits (407), Expect = 9e-37 Identities = 101/324 (31%), Positives = 160/324 (49%), Gaps = 4/324 (1%) Frame = +3 Query: 1698 DPLKLY---SSDHPCLSIVTSQLTGNNYLSWRRSMLIALGAKTKLGFINEKIEIPEDDSP 1868 DPL Y S+++P +S+V++ L +NYLSW +SML+ LG K KL FI+ + P Sbjct: 10 DPLSPYFLPSNENPSISLVSAPLNDHNYLSWSQSMLLVLGTKNKLAFIDGSLARPVTAGV 69 Query: 1869 KYDQWRKVDCMVISWILNSI-KDLVDVFIYCNSAKELWDDIAKRFGDCNGPMIYQLERDI 2045 W + + +VISWI+ S+ L+ I+ +A ++W+D+ KR+ + I +L +I Sbjct: 70 DQTAWDRCNKLVISWIVQSLDTSLIPSVIWMPTASQIWNDLKKRYYQGDAFRISELLEEI 129 Query: 2046 VNMNQGGLSVVEYFTKLKRLWDELACIMPLPICEGETRRLIDERDMNRKLMQFLMGLHES 2225 ++ QG +S+ YFT L+ LW EL P+P C T + ++FL GL+E Sbjct: 130 YSLKQGNMSITHYFTTLQGLWQELDHFCPIPSCTCFTTECV---------IRFLKGLNEQ 180 Query: 2226 YDQVHNQLLLMDPLPTVDKAYSMVLRVGKQCNVHLLYRDSSENAAMSTMINNFGQRNPER 2405 Y V +Q++LMDPLP+V K +SM+L+ ++ + +++N ++ NN ER Sbjct: 181 YSNVRSQVMLMDPLPSVQKVFSMILQQERE------FHGTNDNQVLAVTSNN------ER 228 Query: 2406 GNYVGGLNSGRGNSVGGWNTNXXXXXXXXXXXXXXXXXXXTKEEKSKLVCDHCDMSGHER 2585 NY G R +NT VC HC GH Sbjct: 229 NNYKGSKTFKRNKD---YNTK---------------------------VCSHCGRIGHLV 258 Query: 2586 AKCFKLHGYPDWYKQLREERGRML 2657 C+K HG P L+ + GR++ Sbjct: 259 DSCYKKHGPP-----LQHKHGRIV 277 >ref|XP_012486681.1| PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Gossypium raimondii] Length = 683 Score = 211 bits (538), Expect(2) = e-106 Identities = 114/255 (44%), Positives = 159/255 (62%), Gaps = 2/255 (0%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWV++VK + DG+ ++ KARLVAKG+ Q+ GVDY FSPVAK+ TVR+++ALAT + Sbjct: 216 GCKWVFRVKHRADGSTERYKARLVAKGYTQI-GVDYFDTFSPVAKITTVRLLLALATSRH 274 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 + QLDVNN FLHG L+ED+YM P G+ +VC L +S+YGLKQASRQW ++ T Sbjct: 275 WHIQQLDVNNAFLHGDLNEDVYMLPPPGFSHDST-KVCKLHKSIYGLKQASRQWFSKLTT 333 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 L G+ QS DH +F +K F TG EI ++K++LD F IKD Sbjct: 334 ALISLGYIQSTADHSMFTKKHSEDFTVLLIYVDDIILTGTSSPEIMKVKQFLDTTFRIKD 393 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPG--IKLRGNEGN 714 L YFLG+E+ R++ ++QRKY ++I ++G ++ K A TP+ KL +G Sbjct: 394 LGDLKYFLGLEVARTSQGIHISQRKYALEILQESGFIECKPAKTPMATKSVYKLTSTDGE 453 Query: 715 PLEDPERYRRLIGML 759 L D YR+L+G L Sbjct: 454 LLSDITSYRQLVGKL 468 Score = 205 bits (521), Expect(2) = e-106 Identities = 97/184 (52%), Positives = 126/184 (68%) Frame = +3 Query: 756 AAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLVSWK 935 AA +LRYLKG PS GLFY A + L+A+ D+DW C T +SI GYC+F G L+SW+ Sbjct: 499 AAHRVLRYLKGCPSTGLFYPASSSFELKAFSDSDWAGCPETRRSITGYCIFFGEALISWR 558 Query: 936 TKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIVKNP 1115 KKQ TVSRSS+EAEYRAL S VCE+QWL +L DL + + ++CDN++ I I NP Sbjct: 559 AKKQPTVSRSSSEAEYRALASTVCEVQWLHYLLCDLHVPISHATPVFCDNKSTIQIASNP 618 Query: 1116 VFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLGLFD 1295 FHERTKH+EID H+VR + + L +S QLAD FTK+LA PF + SKLG+ + Sbjct: 619 TFHERTKHIEIDCHIVREKLQKDIVHLLPCTSSAQLADLFTKALAAQPFQDMISKLGMLN 678 Query: 1296 LHNP 1307 +H+P Sbjct: 679 IHSP 682 >gb|KYP60096.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 496 Score = 227 bits (579), Expect(2) = e-106 Identities = 117/255 (45%), Positives = 161/255 (63%), Gaps = 2/255 (0%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GC+WVY +K+ PDGTVD+ KARLVAKG+ Q++G+DY FSPVAK+ TVR+ +A+A ++ Sbjct: 27 GCRWVYAIKVGPDGTVDRLKARLVAKGYTQIYGLDYGDTFSPVAKIPTVRLFLAMAAIRH 86 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGY-CKAKPGEVCHLQRSLYGLKQASRQWNAEFC 357 PL QLD+ N FLHG L+E+IYM G+ + + G VC L+RSLYGLKQ+ R W +F Sbjct: 87 WPLHQLDIKNAFLHGELEEEIYMEQPPGFVAQGESGLVCRLRRSLYGLKQSPRAWFGKFS 146 Query: 358 TKLQQFGFSQSAHDHCLF-LRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTI 534 +Q FG +S DH +F S TG + I +LK++L F Sbjct: 147 HVVQNFGLKRSEADHSVFYCHTSPGRCVYLIVYVDDIVITGNDATTISQLKKHLFSQFQT 206 Query: 535 KDLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGN 714 KDL + YFLG+E+ +S + ++QRKY IDI +TGM+ K +P+ P KL ++G Sbjct: 207 KDLGHLRYFLGIEVAQSKEGIVISQRKYAIDILKETGMLDCKPIDSPMDPNQKLMADQGE 266 Query: 715 PLEDPERYRRLIGML 759 P DPERYRRL+G L Sbjct: 267 PFTDPERYRRLVGKL 281 Score = 189 bits (479), Expect(2) = e-106 Identities = 91/185 (49%), Positives = 117/185 (63%) Frame = +3 Query: 747 NWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLV 926 +W+A + +LRY+K P GL Y + YCDADW C +S GYCVFLG L+ Sbjct: 309 HWNAVLRILRYIKKAPGQGLLYEDKGDSQISGYCDADWAGCPIDRRSTTGYCVFLGGNLI 368 Query: 927 SWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIV 1106 SWK+KKQN V+RSSAEAEYRA+ + CEL W+ L ++L P+ L+CDNQAA+HI Sbjct: 369 SWKSKKQNVVARSSAEAEYRAMALITCELMWIKQLLQELKFCEGHPMKLYCDNQAALHIA 428 Query: 1107 KNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLG 1286 NPVFHERTKH+E+D H VR + V+S QLAD TKSL F+ SKLG Sbjct: 429 SNPVFHERTKHIEVDCHFVREKLLSKEIVTKFVTSNEQLADVMTKSLRGPRIQFLCSKLG 488 Query: 1287 LFDLH 1301 ++L+ Sbjct: 489 AYNLY 493 >gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1353 Score = 221 bits (562), Expect(2) = e-106 Identities = 111/253 (43%), Positives = 157/253 (62%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GC+WV+KVK DG+V++ KARLVAKGF Q+ G+DY+ FSPV ++ T+R+ +A+A Sbjct: 878 GCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIAAASN 937 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 + QLD+N FLHG L E++YM P G + P +VC LQ+SLYGLKQ SRQWN + Sbjct: 938 WSVHQLDINTAFLHGDLVEEVYMKPPPGLILSSPNKVCKLQKSLYGLKQVSRQWNIKLTE 997 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 L+ FGF QS D+ LF ++++ F +G +EI ++KR LD F+IKD Sbjct: 998 TLKLFGFVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKD 1057 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L YFLG+E RS ++ QRKY +++ DTG++ SK TP+ +L + + Sbjct: 1058 LGQLSYFLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLY 1117 Query: 721 EDPERYRRLIGML 759 DP YRRL+G L Sbjct: 1118 SDPSSYRRLVGRL 1130 Score = 194 bits (493), Expect(2) = e-106 Identities = 96/191 (50%), Positives = 129/191 (67%) Frame = +3 Query: 738 SSPNWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGS 917 ++ ++ AA +LRY+K TP+ GLF+ + + L L Y D+DW +C + +SI G+C FLG+ Sbjct: 1155 NNAHFQAARKVLRYVKATPTKGLFFPSSSDLKLTGYTDSDWATCPDSRRSISGFCFFLGN 1214 Query: 918 CLVSWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAI 1097 LVSWK+KKQN VSRSS+EAEYRAL VCE QWL L D L +P++L+CDNQ+A+ Sbjct: 1215 ALVSWKSKKQNVVSRSSSEAEYRALALGVCEAQWLHKLLTDFQLQDLIPISLFCDNQSAL 1274 Query: 1098 HIVKNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFS 1277 +I NPVFHERTKH+EID H VR+ + GF+ L ++S QLAD TK L F Sbjct: 1275 YIAANPVFHERTKHVEIDCHTVRDQVQAGFIHLAPITSSGQLADILTKPLLPKMFQDFVC 1334 Query: 1278 KLGLFDLHNPT 1310 KLGL + P+ Sbjct: 1335 KLGLSNFTTPS 1345 Score = 131 bits (329), Expect = 2e-27 Identities = 86/290 (29%), Positives = 134/290 (46%), Gaps = 1/290 (0%) Frame = +3 Query: 1791 MLIALGAKTKLGFINEKIEIPEDDSPKYDQWRKVDCMVISWILNSIK-DLVDVFIYCNSA 1967 ML+ LG K KL F++ + P W + + +VISWI+ S+ L+ I+ +A Sbjct: 1 MLLVLGTKNKLAFVDGSLARPVTAGVDQTAWDRCNKLVISWIVQSLDTSLIPSVIWMPTA 60 Query: 1968 KELWDDIAKRFGDCNGPMIYQLERDIVNMNQGGLSVVEYFTKLKRLWDELACIMPLPICE 2147 ++W+D+ KR+ + I +L +I ++ QG +S+ YFT L+ LW EL P+P C Sbjct: 61 SQIWNDLKKRYYQGDAFRISELLEEIYSLKQGNMSITHYFTTLQGLWQELDHFCPIPSCT 120 Query: 2148 GETRRLIDERDMNRKLMQFLMGLHESYDQVHNQLLLMDPLPTVDKAYSMVLRVGKQCNVH 2327 T R FL GL+E Y V +Q++LMDPLP+V K +SM+L+ ++ Sbjct: 121 CFTTR-------------FLKGLNEQYSNVRSQVMLMDPLPSVQKVFSMILQQERE---- 163 Query: 2328 LLYRDSSENAAMSTMINNFGQRNPERGNYVGGLNSGRGNSVGGWNTNXXXXXXXXXXXXX 2507 + +++N ++ NN ER NY G R +NT Sbjct: 164 --FHGTNDNQVLAVTSNN------ERNNYKGSKTFKRNKD---YNTK------------- 199 Query: 2508 XXXXXXTKEEKSKLVCDHCDMSGHERAKCFKLHGYPDWYKQLREERGRML 2657 VC HC GH C+K HG P L+ + GR++ Sbjct: 200 --------------VCSHCGRIGHLVDSCYKKHGPP-----LQHKHGRIV 230 >emb|CAN81001.1| hypothetical protein VITISV_006992 [Vitis vinifera] Length = 1131 Score = 210 bits (535), Expect(2) = e-105 Identities = 117/256 (45%), Positives = 154/256 (60%), Gaps = 3/256 (1%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWVYK+K DGTV++ KA+LVAKGF Q G+DY FSP+AKL T+R ++A+A ++ Sbjct: 663 GCKWVYKIKYNSDGTVERYKAQLVAKGFTQREGIDYKETFSPMAKLTTIRCLLAIAAVRH 722 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGE---VCHLQRSLYGLKQASRQWNAE 351 Q+DV N FLHG L E++YM G+C+ GE VC L +SLYGLKQASR W + Sbjct: 723 WSFHQMDVQNAFLHGDLLEEVYMQLPPGFCRQ--GETLMVCRLNKSLYGLKQASRSWFQK 780 Query: 352 FCTKLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFT 531 F +QQ GF QS D+ LF + S SF TG + I LK L F Sbjct: 781 FSATIQQNGFHQSMADYSLFTKISGNSFIVVLIYVDDMIITGNDENVIAALKESLHTKFR 840 Query: 532 IKDLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEG 711 IKDL YFLG+E+ RS D ++QRKY +DI + G++ +K TP+ KL G Sbjct: 841 IKDLGQLRYFLGIEVARSTDGILISQRKYTLDILDEAGLLGAKPLLTPMEENNKLLPTVG 900 Query: 712 NPLEDPERYRRLIGML 759 + L++P YRRL+G L Sbjct: 901 DLLKNPSTYRRLVGQL 916 Score = 203 bits (516), Expect(2) = e-105 Identities = 96/189 (50%), Positives = 126/189 (66%) Frame = +3 Query: 744 PNWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCL 923 P+ HLL+YLKG P GL++ A L L +CDADW C+ T +S+ GYC+FLG L Sbjct: 943 PHLHVVHHLLQYLKGAPGQGLYFPAKGNLLLRGFCDADWARCSITRRSVTGYCIFLGGAL 1002 Query: 924 VSWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHI 1103 +SWKTKKQ TVSRSSAE+EYRA+ S+ CEL WL +L DL + P L+ D++AA+HI Sbjct: 1003 ISWKTKKQTTVSRSSAESEYRAMASITCELTWLKYLLDDLKVEHSQPAKLFYDSKAALHI 1062 Query: 1104 VKNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKL 1283 NPV+HE TKH+EID H+VR + G + HV S QL D FTK L + F + +K Sbjct: 1063 AANPVYHECTKHIEIDCHVVRERIQLGAIVTAHVPSSCQLVDLFTKPLNSSIFHSLLNKF 1122 Query: 1284 GLFDLHNPT 1310 G+ D+H+PT Sbjct: 1123 GVLDIHDPT 1131 Score = 170 bits (431), Expect = 9e-40 Identities = 87/217 (40%), Positives = 126/217 (58%), Gaps = 1/217 (0%) Frame = +3 Query: 1668 TGAIESEYDDDPLKLYSSDHPCLSIVTSQLTGNNYLSWRRSMLIALGAKTKLGFINEKIE 1847 TG S+ + L +S HP + +V+ L G+NY +W R+M I+L AK K+GF+ I+ Sbjct: 6 TGLTSSKATTEALDPFSLYHPGMVLVSKVLEGDNYSTWSRAMRISLSAKDKIGFVTGSIK 65 Query: 1848 IPEDDSPKYDQWRKVDCMVISWILNSIK-DLVDVFIYCNSAKELWDDIAKRFGDCNGPMI 2024 P + W++ + MVISW+LNSI D+ IY + E+W D+ +RF N I Sbjct: 66 PPSSTDDSFPSWQRCNDMVISWLLNSIHPDIASSVIYAETTSEIWADLRERFSQGNDSRI 125 Query: 2025 YQLERDIVNMNQGGLSVVEYFTKLKRLWDELACIMPLPICEGETRRLIDERDMNRKLMQF 2204 YQ++RDIV QG S+ Y+TKLK WDEL+ + C + E D ++MQF Sbjct: 126 YQIKRDIVEHRQGQQSISVYYTKLKAFWDELSSYHEVLSCSCGGLEKLKEMDEKERVMQF 185 Query: 2205 LMGLHESYDQVHNQLLLMDPLPTVDKAYSMVLRVGKQ 2315 LMGL++SY + Q+LLM PLP + YS+VL+ KQ Sbjct: 186 LMGLNDSYAAIRGQILLMQPLPDTRRVYSLVLQQEKQ 222 >emb|CAN62906.1| hypothetical protein VITISV_043610 [Vitis vinifera] Length = 1498 Score = 209 bits (531), Expect(2) = e-105 Identities = 113/254 (44%), Positives = 159/254 (62%), Gaps = 1/254 (0%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 G +WVYK+K + DG++++ KARLVAKGF Q+ GVDY FSP AK+++VR ++ALA +G Sbjct: 1031 GYRWVYKIKHRSDGSIERYKARLVAKGFTQLEGVDYQDTFSPTAKIISVRCLLALAAARG 1090 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCK-AKPGEVCHLQRSLYGLKQASRQWNAEFC 357 + Q+DVNN FLHG L E+IYM+P G + + VC L +SLYGLKQASRQW A+F Sbjct: 1091 XSIHQMDVNNAFLHGDLHEEIYMSPPLGLRRQGEENLVCRLHKSLYGLKQASRQWFAKFS 1150 Query: 358 TKLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIK 537 +Q G++QS D+ LF RK SF TG I K++L F +K Sbjct: 1151 EAIQSAGYAQSRADYSLFTRKQGKSFTALLIYVDDILITGNDPVSIATTKKFLHSHFHLK 1210 Query: 538 DLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNP 717 DL YFLG+E+ S + ++QRKY ++I D G++ + TP+ G+KL ++ + Sbjct: 1211 DLGDLKYFLGIEVSASKNGIFISQRKYALEIIEDAGLLGAAPIDTPMERGLKL-SDKSDL 1269 Query: 718 LEDPERYRRLIGML 759 L+D RYRRL+G L Sbjct: 1270 LKDQGRYRRLVGRL 1283 Score = 204 bits (519), Expect(2) = e-105 Identities = 96/186 (51%), Positives = 128/186 (68%) Frame = +3 Query: 753 DAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLVSW 932 +AA ++RYLK P GLF+S++N L YCD+DW C T +S GYCVFLG L+SW Sbjct: 1313 EAAFRVVRYLKNAPGQGLFFSSNNDFRLRXYCDSDWAGCPLTRRSTTGYCVFLGPSLISW 1372 Query: 933 KTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIVKN 1112 ++K+Q TVS SSAEAEYRA+ CEL WL +L +DL + P L+CDN+AA+HI N Sbjct: 1373 RSKRQKTVSLSSAEAEYRAMTGACCELTWLRYLLKDLGVLHKEPALLYCDNKAALHIAAN 1432 Query: 1113 PVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLGLF 1292 PVFHERT+H+E+D H +R+ +DG + HVSS QLAD TK L + F+ + KLG+ Sbjct: 1433 PVFHERTRHIEMDCHYIRDKIQDGSIITRHVSSAHQLADILTKPLGKEFFAPMIRKLGVQ 1492 Query: 1293 DLHNPT 1310 D+H+PT Sbjct: 1493 DIHSPT 1498 Score = 178 bits (451), Expect = 4e-42 Identities = 114/346 (32%), Positives = 176/346 (50%), Gaps = 13/346 (3%) Frame = +3 Query: 1698 DPLKLYSSDHPCLSIVTSQLTGNNYLSWRRSMLIALGAKTKLGFINEKIEIPED--DSPK 1871 +P + SDHP L +++ L G+NY +W+R+M++AL +K KLGF+N I+ P + D Sbjct: 17 NPYFTHHSDHPGLVLISKSLNGDNYSAWKRAMILALNSKNKLGFVNGSIKAPSEEIDPEG 76 Query: 1872 YDQWRKVDCMVISWILNSIK-DLVDVFIYCNSAKELWDDIAKRFGDCNGPMIYQLERDIV 2048 Y W + + MV SWI+N++ ++ + IY ++A E+W+D+ +RF N P I++++RDI Sbjct: 77 YATWSRCNDMVHSWIVNTLNPEIANSVIYYSTAHEVWEDLCERFSQSNAPRIFEIQRDIA 136 Query: 2049 NMNQGGLSVVEYFTKLKRLWDELACIMPLPICEGETRRLIDERDMNRKLMQFLMGLHESY 2228 + Q LSV Y+TKLK LWDELA + +KLMQFLMGL+ESY Sbjct: 137 CLRQEQLSVSAYYTKLKGLWDELA---------SYNAAAHGAQQDQQKLMQFLMGLNESY 187 Query: 2229 DQVHNQLLLMDPLPTVDKAYSMVLRVGKQ--CNVHLLYRDSSENAAMSTMINNFG----- 2387 + Q+LLM+PLP+V +AYS + + KQ +S+ +AAM+ N Sbjct: 188 SVIRGQILLMNPLPSVRQAYSTISQEEKQRLLTSTNAAAESAASAAMAVRSNGKSLTTWK 247 Query: 2388 ---QRNPERGNYVGGLNSGRGNSVGGWNTNXXXXXXXXXXXXXXXXXXXTKEEKSKLVCD 2558 R+ R SG N + ++ + + C Sbjct: 248 DGIDRSNTRRMEPTNRPSGSQNFLENRSSQGQDGRPFFDQDRRRIGSGRGRPQ-----CS 302 Query: 2559 HCDMSGHERAKCFKLHGYPDWYKQLREERGRMLANSVHNEFAESGN 2696 +C GH KCF+LHGYP + + R G +NS N+ + N Sbjct: 303 YCGDMGHWVQKCFQLHGYPPDHPKARMNLG---SNSNRNKSFSATN 345 >gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1352 Score = 216 bits (550), Expect(2) = e-105 Identities = 116/253 (45%), Positives = 156/253 (61%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKW+YKVK DG+V++ KARLVAKG+ Q+ G+D+L F+PVAKL TV ++++LA + Sbjct: 881 GCKWIYKVKHHADGSVERHKARLVAKGYTQLEGLDFLDTFAPVAKLTTVHLLLSLAAIHN 940 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 L QLD+NN FLHG L+E++YM G PG+VC L RSLYGLKQASRQW A T Sbjct: 941 WFLKQLDINNAFLHGDLNEEVYMHLPPGLTTTTPGQVCKLNRSLYGLKQASRQWYARLST 1000 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 + Q GF S+ DH LFL+ ++++ G ++EI ++ L F IKD Sbjct: 1001 FIMQQGFHHSSADHSLFLKFTNSACTALLVYVDDIVLAGNDLTEIHQITALLHKTFKIKD 1060 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L YFLG+E+ R++ L QRKY +DI DTGM+ + T + L + G PL Sbjct: 1061 LGDLTYFLGLEVARNSIEIHLCQRKYTLDILSDTGMLACCPSSTLMDYKAALSSDTGTPL 1120 Query: 721 EDPERYRRLIGML 759 DP YR+LIG L Sbjct: 1121 TDPSAYRQLIGRL 1133 Score = 197 bits (500), Expect(2) = e-105 Identities = 96/183 (52%), Positives = 129/183 (70%) Frame = +3 Query: 756 AAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLVSWK 935 AA +LRYLK P G+F SA++ L L+++ D+DW C T +SI G+ V+LG L+SWK Sbjct: 1164 AAFRILRYLKQAPGRGIFLSANSSLQLKSFSDSDWAGCMDTRRSITGFAVYLGHSLISWK 1223 Query: 936 TKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIVKNP 1115 +KKQ TVSRSS+EAEYRAL S CE+QWL++L D L P L+CDNQ+ + I N Sbjct: 1224 SKKQATVSRSSSEAEYRALASTSCEIQWLTYLLEDFRLQFIRPALLYCDNQSVLQIACNQ 1283 Query: 1116 VFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLGLFD 1295 VFHERTKH+EID HLVR +G L+L VSS QLAD +TK+L+ + F+ + SKLG+ D Sbjct: 1284 VFHERTKHIEIDCHLVREKVSNGLLKLLPVSSSAQLADIYTKALSPSRFNELNSKLGMSD 1343 Query: 1296 LHN 1304 +++ Sbjct: 1344 IYS 1346 Score = 78.6 bits (192), Expect = 3e-11 Identities = 56/219 (25%), Positives = 84/219 (38%), Gaps = 6/219 (2%) Frame = +3 Query: 1977 WDDIAKRFGDCNGPMIYQLERDIVNMNQGGLSVVEYFTKLKRLWDELACIMPLPICEGET 2156 W R+ + I L+ + ++ QG LS+ E+FTKL+ +WDEL P P C Sbjct: 39 WSRSISRYAQSDLLRISDLQHEASSIRQGDLSITEFFTKLRVIWDELENFRPDPTCSCTQ 98 Query: 2157 R------RLIDERDMNRKLMQFLMGLHESYDQVHNQLLLMDPLPTVDKAYSMVLRVGKQC 2318 + I +R + MQFL GL+E Y V + +LLMDP+P + K +S V++ +Q Sbjct: 99 KCSCNVIPTIAQRKREDQAMQFLRGLNEQYSNVKSHVLLMDPIPPISKIFSYVVQQERQ- 157 Query: 2319 NVHLLYRDSSENAAMSTMINNFGQRNPERGNYVGGLNSGRGNSVGGWNTNXXXXXXXXXX 2498 LL + N T I N Sbjct: 158 ---LLGSNFVANTITKTAIIN--------------------------------------- 175 Query: 2499 XXXXXXXXXTKEEKSKLVCDHCDMSGHERAKCFKLHGYP 2615 S + C +C GH C++ HG+P Sbjct: 176 ------------AASSVTCTYCGKQGHAENVCYRKHGFP 202 >gb|KYP58900.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan] Length = 512 Score = 223 bits (569), Expect(2) = e-105 Identities = 116/255 (45%), Positives = 160/255 (62%), Gaps = 2/255 (0%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GC+WVY +K+ PDGTVD+ KARLVAKG+ Q++G+DY FSPVAK+ TVR+ +A+A ++ Sbjct: 43 GCRWVYAIKVGPDGTVDRLKARLVAKGYTQIYGLDYGDTFSPVAKIPTVRLFLAMAAIRH 102 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGY-CKAKPGEVCHLQRSLYGLKQASRQWNAEFC 357 PL QLD+ N FLHG L+E+IYM G+ + + G VC L+RSLYGLKQ+ R W +F Sbjct: 103 WPLHQLDIKNAFLHGELEEEIYMEQPPGFVAQGESGLVCRLRRSLYGLKQSPRAWFGKFS 162 Query: 358 TKLQQFGFSQSAHDHCLF-LRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTI 534 +Q FG +S DH +F S TG + I +LK++L F Sbjct: 163 HVVQNFGLKRSEADHSVFYCHTSPGRCVYLIVYVDDIVITGNDATTISQLKKHLFSQFQT 222 Query: 535 KDLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGN 714 KDL + YFLG+E+ +S + ++QRKY IDI +TGM+ K +P+ P KL ++G Sbjct: 223 KDLGHLRYFLGIEVAQSKEGIVISQRKYAIDILKETGMLDCKPIDSPMDPNQKLMADQGE 282 Query: 715 PLEDPERYRRLIGML 759 DPERYRRL+G L Sbjct: 283 LFTDPERYRRLVGKL 297 Score = 189 bits (479), Expect(2) = e-105 Identities = 91/185 (49%), Positives = 117/185 (63%) Frame = +3 Query: 747 NWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLV 926 +W+A + +LRY+K P GL Y + YCDADW C +S GYCVFLG L+ Sbjct: 325 HWNAVLRILRYIKKAPGQGLLYEDKGDSQISGYCDADWAGCPIDRRSTTGYCVFLGGNLI 384 Query: 927 SWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIV 1106 SWK+KKQN V+RSSAEAEYRA+ + CEL W+ L ++L P+ L+CDNQAA+HI Sbjct: 385 SWKSKKQNVVARSSAEAEYRAMALITCELMWIKQLLQELKFCEGHPMKLYCDNQAALHIA 444 Query: 1107 KNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLG 1286 NPVFHERTKH+E+D H VR + V+S QLAD TKSL F+ SKLG Sbjct: 445 SNPVFHERTKHIEVDCHFVREKLLSKEIVTKFVTSNEQLADVLTKSLRGPRIQFLCSKLG 504 Query: 1287 LFDLH 1301 ++L+ Sbjct: 505 AYNLY 509 >gb|KYP36109.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1115 Score = 207 bits (527), Expect(2) = e-104 Identities = 106/253 (41%), Positives = 154/253 (60%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GCKWV+K+K P+G++++ KARLVAKG+ Q+ G+DY FSPV K+ TVR+V+ALA++ Sbjct: 631 GCKWVFKIKRLPNGSIERYKARLVAKGYSQIEGIDYFETFSPVVKMTTVRVVLALASINQ 690 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGYCKAKPGEVCHLQRSLYGLKQASRQWNAEFCT 360 + QLDV+N FLHG L ED+YM +G C L++SLYGLKQ+SR+W + Sbjct: 691 WHIQQLDVSNAFLHGDLLEDVYMELPQGLTGYSSSHSCKLRKSLYGLKQSSRKWYEKLSN 750 Query: 361 KLQQFGFSQSAHDHCLFLRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTIKD 540 L G+ Q+ DH LF ++ ++F TG +EI +K L F +KD Sbjct: 751 LLLSNGYKQAHSDHSLFTKRHGSAFTALLIYVDDIVLTGNSAAEITRIKHILHSNFHVKD 810 Query: 541 LSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGNPL 720 L YFLG+E+ S+ +L QRKY +D+ D+GM+ K + TP+ ++L + L Sbjct: 811 LGQLKYFLGIEVAHSSKGISLCQRKYCLDLLSDSGMLGCKPSSTPMDSTLRLHDDASGYL 870 Query: 721 EDPERYRRLIGML 759 +DP YRRL+G L Sbjct: 871 DDPLPYRRLVGRL 883 Score = 201 bits (512), Expect(2) = e-104 Identities = 99/184 (53%), Positives = 125/184 (67%) Frame = +3 Query: 756 AAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLVSWK 935 AAM +LRYLK P GLF+ P+ + + DADW +C + +SI GYC F+G+ L+SWK Sbjct: 914 AAMRVLRYLKSCPGTGLFFPRVCPIQVSGFSDADWATCVASRRSITGYCFFIGNALISWK 973 Query: 936 TKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIVKNP 1115 TKKQ TVSRSS+EAEYRAL S CELQW+ +L RDL +SL L+CDN +A+HI NP Sbjct: 974 TKKQTTVSRSSSEAEYRALASATCELQWIIYLLRDLHISLSQISLLYCDNTSALHIAANP 1033 Query: 1116 VFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLGLFD 1295 VFHERTKHL+ID H+VR + G ++L V S QLAD FTK+L F SKL L + Sbjct: 1034 VFHERTKHLDIDCHIVREKTQAGLMKLLPVPSAKQLADIFTKALPPHAFKLNLSKLQLQN 1093 Query: 1296 LHNP 1307 + P Sbjct: 1094 IFAP 1097 >gb|KYP44825.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan] Length = 1371 Score = 223 bits (569), Expect(2) = e-103 Identities = 116/255 (45%), Positives = 160/255 (62%), Gaps = 2/255 (0%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GC+WVY +K+ PDGTVD+ KARLVAKG+ Q++G+DY FSPVAK+ TVR+ +A+A ++ Sbjct: 902 GCRWVYAIKVGPDGTVDRLKARLVAKGYTQIYGLDYGDTFSPVAKIPTVRLFLAMAAIRH 961 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGY-CKAKPGEVCHLQRSLYGLKQASRQWNAEFC 357 PL QLD+ N FLHG L+E+IYM G+ + + G VC L+RSLYGLKQ+ R W +F Sbjct: 962 WPLHQLDIKNAFLHGELEEEIYMEQPPGFVAQGESGLVCRLRRSLYGLKQSPRAWFGKFS 1021 Query: 358 TKLQQFGFSQSAHDHCLF-LRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTI 534 +Q FG +S DH +F S TG + I +LK++L F Sbjct: 1022 HVVQNFGLKRSEADHSVFYCHTSPGRCVYLIVYVDDIVITGNDATTISQLKKHLFSQFQT 1081 Query: 535 KDLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGN 714 KDL + YFLG+E+ +S + ++QRKY IDI +TGM+ K +P+ P KL ++G Sbjct: 1082 KDLGHLRYFLGIEVAQSKEGIVISQRKYAIDILKETGMLDCKPIDSPMDPNQKLMADQGE 1141 Query: 715 PLEDPERYRRLIGML 759 DPERYRRL+G L Sbjct: 1142 LFTDPERYRRLVGKL 1156 Score = 184 bits (467), Expect(2) = e-103 Identities = 88/185 (47%), Positives = 115/185 (62%) Frame = +3 Query: 747 NWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLV 926 +W+A + +LRY+K P GL Y + YCDADW C +S GYCVFLG L+ Sbjct: 1184 HWNAVLRILRYIKKAPGQGLLYEDKGDSQISGYCDADWAGCPIDRRSTTGYCVFLGGNLI 1243 Query: 927 SWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIV 1106 SWK+KKQN V+RSS EA+YRA+ + CEL W+ L ++L P+ L+CDNQ A+HI Sbjct: 1244 SWKSKKQNVVARSSVEAKYRAMALITCELMWIKQLLQELKFCEGHPMKLYCDNQVALHIA 1303 Query: 1107 KNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLG 1286 NPVFHERTKH+E+D H VR + V+S QLAD TKSL F+ SKLG Sbjct: 1304 SNPVFHERTKHIEVDCHFVREKLLSKEIVTKFVTSNEQLADVMTKSLRGPRIQFLCSKLG 1363 Query: 1287 LFDLH 1301 ++L+ Sbjct: 1364 AYNLY 1368 >gb|KYP63559.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan] Length = 1378 Score = 221 bits (564), Expect(2) = e-103 Identities = 115/255 (45%), Positives = 160/255 (62%), Gaps = 2/255 (0%) Frame = +1 Query: 1 GCKWVYKVKIKPDGTVDQCKARLVAKGFHQVHGVDYLGRFSPVAKLVTVRMVIALATMKG 180 GC+WVY +K+ PDG +D+ KARLVAKG+ Q++G+DY FSPVAK+ +VR+ +A+A ++ Sbjct: 909 GCRWVYAIKVGPDGKLDRLKARLVAKGYTQIYGLDYGDTFSPVAKVTSVRLFLAMAAIRH 968 Query: 181 *PLFQLDVNNTFLHGYLDEDIYMTPLEGY-CKAKPGEVCHLQRSLYGLKQASRQWNAEFC 357 PL QLD+ N FLHG L+E+IYM G+ + + G VC L+RSLYGLKQ+ R W +F Sbjct: 969 WPLHQLDIKNAFLHGDLEEEIYMEQPPGFVAQGECGLVCKLRRSLYGLKQSPRAWFGKFS 1028 Query: 358 TKLQQFGFSQSAHDHCLF-LRKSDTSFXXXXXXXXXXXXTGPLISEIDELKRYLDDLFTI 534 +Q FG ++S DH +F S TG +I +LKR+L F Sbjct: 1029 HVVQSFGLNRSEADHSVFYCHTSSGKCVYLIVYVDDIVITGNDSVKISQLKRHLVSHFET 1088 Query: 535 KDLSYA*YFLGMELDRSADRTALNQRKYIIDIFLDTGMMQSKAAPTPLPPGIKLRGNEGN 714 KDL Y YFLG+E+ +S + ++QRKY +DI +TGM+ K +P+ P KL + G Sbjct: 1089 KDLGYLKYFLGIEVAQSKEGIVISQRKYALDILEETGMINCKPIDSPMDPNKKLVADHGE 1148 Query: 715 PLEDPERYRRLIGML 759 P DPERYRRL+G L Sbjct: 1149 PFSDPERYRRLVGKL 1163 Score = 185 bits (470), Expect(2) = e-103 Identities = 91/187 (48%), Positives = 116/187 (62%) Frame = +3 Query: 747 NWDAAMHLLRYLKGTPSVGLFYSAHNPLHLEAYCDADWVSCAGTCKSIIGYCVFLGSCLV 926 +W+A +H+LRY+K P GL Y + YCDADW +S GYCVF+G ++ Sbjct: 1191 HWNAVIHILRYIKKNPGQGLLYEDKGSTQISGYCDADWAGSPIDRRSTTGYCVFIGGNII 1250 Query: 927 SWKTKKQNTVSRSSAEAEYRALGSMVCELQWLSFLSRDLCLSLPVPVTLWCDNQAAIHIV 1106 SWK+KKQN V++SSAEAEYRA+ + CEL W+ L ++L + L+CDNQAA+HI Sbjct: 1251 SWKSKKQNVVAQSSAEAEYRAMATATCELIWIKQLLQELKFCDVKQMKLYCDNQAALHIA 1310 Query: 1107 KNPVFHERTKHLEIDYHLVRNLYKDGFLQLCHVSSRLQLADFFTKSLARTPFSFIFSKLG 1286 NPVFHERTKH+EID H VR + SS QLAD TKSL FI SKLG Sbjct: 1311 SNPVFHERTKHIEIDCHFVRQKLLSKEIGTEFTSSNDQLADILTKSLRGPRIKFICSKLG 1370 Query: 1287 LFDLHNP 1307 +DL+ P Sbjct: 1371 AYDLYAP 1377