BLASTX nr result
ID: Rehmannia27_contig00015880
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00015880
(744 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 241 9e-73
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 175 1e-46
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 171 3e-45
gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposo... 166 8e-45
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo... 165 1e-44
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo... 165 7e-44
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 167 1e-43
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 159 2e-43
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 162 3e-42
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 162 4e-42
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 162 6e-42
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 161 8e-42
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 158 1e-40
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 157 2e-40
gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo... 153 5e-40
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 155 1e-39
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 155 1e-39
gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposo... 152 3e-39
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 153 7e-39
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 153 7e-39
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttata]
Length = 598
Score = 241 bits (615), Expect = 9e-73
Identities = 126/233 (54%), Positives = 162/233 (69%), Gaps = 4/233 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSA-TMPLPESEPAPNKVEQLL 178
FLGYP+GVKGYRLWL+G+ G+K I SRDVIFNES FPCL+ + +P+S PN+VEQL
Sbjct: 398 FLGYPDGVKGYRLWLKGDFGYKIIISRDVIFNESGFPCLAVPNVVIPQS--TPNEVEQL- 454
Query: 179 GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEP--EELGN 352
++V ++E+ ++L D P ++L +
Sbjct: 455 -----------------------------PIKSDDVSDSELSENLQDQTVELPNVDDLSD 485
Query: 353 YQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMH 529
YQLARDR RR ++R+P FDDF + S+VF+VFES+D EPK+Y+DALKS+ S EWLN+M+
Sbjct: 486 YQLARDRPRREHVRKPKHFDDFHLASHVFNVFESLDGNEPKSYKDALKSDKSTEWLNSMN 545
Query: 530 EEMNSLHVNNTWILVPKPENCSVVDCKWLFKVKNECESVRFKARLVAKGFTQK 688
+EMNSLHVN TW LVPKP NCSVVDC WLFKVKNE +S+++KARLVAKGFTQK
Sbjct: 546 DEMNSLHVNQTWELVPKPVNCSVVDCNWLFKVKNEVDSIKYKARLVAKGFTQK 598
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 175 bits (444), Expect = 1e-46
Identities = 103/252 (40%), Positives = 141/252 (55%), Gaps = 5/252 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNK-VEQLL 178
FLGYP+GVKGY+LW+ + K I SRDV FNE D S+ P K VE L
Sbjct: 642 FLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDM-----------SKQTPAKDVEGLD 690
Query: 179 GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEE-LGNY 355
L E E L + + +++V NEP + L +Y
Sbjct: 691 QLQFEVEHETLQ-----------------PEKSKETSSKTAQEEIVHERQNEPTQGLESY 733
Query: 356 QLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEE 535
L RDR +R ++ P R+ +M ++ SV E I + EPKTYQ+A+ S + +W+ A+ EE
Sbjct: 734 NLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEE 793
Query: 536 MNSLHVNNTWILVPKPENCSVVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYT 706
M+SL N TW LV KP++ VV KW+FK K E+ R+KARLVAKGF+QKEG+DY
Sbjct: 794 MDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYN 853
Query: 707 EIFAPVVKFTTV 742
EIF+PVVK +++
Sbjct: 854 EIFSPVVKHSSI 865
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 171 bits (433), Expect = 3e-45
Identities = 104/266 (39%), Positives = 145/266 (54%), Gaps = 19/266 (7%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESD-FPCLSATMPLPESEPAPNKVEQLL 178
F+GYP G KGY++WL E K + SR+VIF E + L+ + + E + + L
Sbjct: 372 FIGYPSGTKGYKVWLLEEQ--KCVISRNVIFQEEVVYKDLNDKETVVKKEDIRTQTDNHL 429
Query: 179 ------------GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDL 322
G++HI+E E E+ +N E + V+
Sbjct: 430 VISKTKEVSDQGGVTHIEECE------------------------ESDENDEQEPETVNE 465
Query: 323 NDNEPEE---LGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALK 493
D E L NYQLA+DR RR I P RF + +++ V ES+ EP++YQ+A +
Sbjct: 466 TDPTVESEGSLANYQLAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQ 525
Query: 494 SEHSQEWLNAMHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVKN---ECESVRFKARL 664
+ +W NA HEEM+SL N TW LV KP N ++ C+WLFK+K+ E VRFKARL
Sbjct: 526 DKEWLKWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARL 585
Query: 665 VAKGFTQKEGIDYTEIFAPVVKFTTV 742
VAKG+TQ+EG+DY EIFAPVVK T++
Sbjct: 586 VAKGYTQREGVDYQEIFAPVVKHTSI 611
>gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 498
Score = 166 bits (419), Expect = 8e-45
Identities = 97/253 (38%), Positives = 137/253 (54%), Gaps = 6/253 (2%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPN---KVEQ 172
F+GYP+GVKGY+LW + G K I SRDV F+E+ L + ES + +VE
Sbjct: 265 FIGYPDGVKGYKLWKLEKGGGKCIISRDVTFDETKLGILE-EQQMEESSSKDHVQFEVES 323
Query: 173 LLGLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGN 352
S I++TEN E D A ++ +++ +
Sbjct: 324 STHSSEINQTEN---------------------SEEITDGASSSGEVA-----RNQDISS 357
Query: 353 YQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHE 532
YQL RDR RR + +R+ +I Y + + EPKTY++A++S +Q+W+ A+HE
Sbjct: 358 YQLVRDRARRVPKPSSRYGYADLICYALNTANEVQGFEPKTYKEAMESSEAQDWMKAVHE 417
Query: 533 EMNSLHVNNTWILVPKPENCSVVDCKWLFKVKN---ECESVRFKARLVAKGFTQKEGIDY 703
EM SL N TW LV P V+ CKW+FK K+ E+ RFKARLVA+GFTQ EG+DY
Sbjct: 418 EMKSLQKNLTWKLVSLPTGKKVISCKWIFKRKDGIPGVEAPRFKARLVARGFTQVEGVDY 477
Query: 704 TEIFAPVVKFTTV 742
EIF+PVVK ++
Sbjct: 478 NEIFSPVVKHCSI 490
>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 516
Score = 165 bits (418), Expect = 1e-44
Identities = 100/252 (39%), Positives = 137/252 (54%), Gaps = 5/252 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGF-KAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLL 178
F+GYPEGVKGYRLW EPG+ K + SRDV+FNE + L P+KVE +
Sbjct: 212 FIGYPEGVKGYRLWCL-EPGYKKCLISRDVVFNEIEMANL----------VKPSKVE--I 258
Query: 179 GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQ 358
D+T + V + + + D+E + +Y
Sbjct: 259 HEKSQDQTIKIEVEFTVITEAKAATQRQQHILQQEL-------------DDEERSIQSYS 305
Query: 359 LARDRTRRNIRQPTRFDDFQMISYVFSV-FESIDNCEPKTYQDALKSEHSQEWLNAMHEE 535
LARDR RR + P R+ ++S+ F+V + D+ EPK+Y +A++S+ WL AM EE
Sbjct: 306 LARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLKAMKEE 365
Query: 536 MNSLHVNNTWILVPKPENCSVVDCKWLFKVKN---ECESVRFKARLVAKGFTQKEGIDYT 706
M SL N TWILV KP+ +V KW+FK K E RFK RLVA+GFTQ+EG+DY
Sbjct: 366 MGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQREGLDYK 425
Query: 707 EIFAPVVKFTTV 742
EIF+PVVK ++
Sbjct: 426 EIFSPVVKHNSI 437
>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 634
Score = 165 bits (418), Expect = 7e-44
Identities = 100/252 (39%), Positives = 137/252 (54%), Gaps = 5/252 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGF-KAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLL 178
F+GYPEGVKGYRLW EPG+ K + SRDV+FNE + L P+KVE +
Sbjct: 330 FIGYPEGVKGYRLWCL-EPGYKKCLISRDVVFNEIEMANL----------VKPSKVE--I 376
Query: 179 GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQ 358
D+T + V + + + D+E + +Y
Sbjct: 377 HEKSQDQTIKIEVEFTVITEAKAATQRQQHILQQEL-------------DDEERSIQSYS 423
Query: 359 LARDRTRRNIRQPTRFDDFQMISYVFSV-FESIDNCEPKTYQDALKSEHSQEWLNAMHEE 535
LARDR RR + P R+ ++S+ F+V + D+ EPK+Y +A++S+ WL AM EE
Sbjct: 424 LARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLKAMKEE 483
Query: 536 MNSLHVNNTWILVPKPENCSVVDCKWLFKVKN---ECESVRFKARLVAKGFTQKEGIDYT 706
M SL N TWILV KP+ +V KW+FK K E RFK RLVA+GFTQ+EG+DY
Sbjct: 484 MGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQREGLDYK 543
Query: 707 EIFAPVVKFTTV 742
EIF+PVVK ++
Sbjct: 544 EIFSPVVKHNSI 555
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 167 bits (422), Expect = 1e-43
Identities = 101/259 (38%), Positives = 152/259 (58%), Gaps = 12/259 (4%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDF---PCLSATMPLPESEPAPNKVEQ 172
F+GYP G+KGYR+WL E K TSR+V+FNE++ SA E+E K+++
Sbjct: 573 FMGYPCGIKGYRVWLPKEG--KCTTSRNVVFNETELYKDTLSSADERKEEAEKEYKKLKK 630
Query: 173 L---LGLSH--IDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEP 337
+ SH + EN++ +EM++++V ++NE
Sbjct: 631 ARKRVSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENLEESEMNEEVVG-SENE- 688
Query: 338 EELGNYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEW 514
+ L +Y LARD RR NIR P+RF+D ++Y + E ++ EPK+Y++ALKS ++W
Sbjct: 689 QSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQW 748
Query: 515 LNAMHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQ 685
NAM EEM+S ++TW L+ KPE ++ CKW+FK+K E R+KARLVAKGF+Q
Sbjct: 749 ENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQ 808
Query: 686 KEGIDYTEIFAPVVKFTTV 742
+EGIDY E+F+ VVK ++
Sbjct: 809 QEGIDYNEVFSLVVKHVSI 827
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 159 bits (401), Expect = 2e-43
Identities = 96/251 (38%), Positives = 145/251 (57%), Gaps = 4/251 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLG 181
F+GYP G+KGYR+WL E K TSR+V+FNE + T+ P+ +E
Sbjct: 74 FMGYPFGIKGYRVWLPEEG--KCTTSRNVVFNEIEL--YKGTLSSPDGRTDYYDLED--S 127
Query: 182 LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 361
S ET + EN++ +E +++ VD ++NE + L +Y L
Sbjct: 128 SSQGGETSS-----------------SSSESSENLEESETNEE-VDGSENE-QSLDDYLL 168
Query: 362 ARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEM 538
AR+R RR NIR P+RF D ++Y + E ++ EPK+Y++A+K ++W +AM EEM
Sbjct: 169 ARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEPKSYEEAMKRSKRKQWESAMKEEM 228
Query: 539 NSLHVNNTWILVPKPENCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDYTE 709
+S ++TW L+ KPE ++ CKW+FK+K E R+K RLVAKGF+Q+EGIDY E
Sbjct: 229 DSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGLEKQRYKVRLVAKGFSQQEGIDYNE 288
Query: 710 IFAPVVKFTTV 742
+F+ VVK ++
Sbjct: 289 VFSLVVKHVSI 299
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 162 bits (411), Expect = 3e-42
Identities = 94/254 (37%), Positives = 139/254 (54%), Gaps = 7/254 (2%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNES---DFPCLSATMPLPESEPAPNKVEQ 172
F+GYP G KGY++WL E K + SR+V+F+E + E+EPA +
Sbjct: 599 FIGYPSGTKGYKIWLLEEQ--KCVISRNVLFHEELVYKDTIEKERVVESEAEPASHSKST 656
Query: 173 LLGLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEP-EELG 349
L+ + + V E+VD + + V+L + + L
Sbjct: 657 LIKMKTPGNLNSGGVIQVSDEEESD----------ESVDEEQEPEPQVELPETQTTSSLA 706
Query: 350 NYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMH 529
NYQL RDR RR I P RF + +++ E++ EP++YQ+A + ++W A H
Sbjct: 707 NYQLVRDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATH 766
Query: 530 EEMNSLHVNNTWILVPKPENCSVVDCKWLFKVKN---ECESVRFKARLVAKGFTQKEGID 700
EE NSL N TW+LV KP++ ++ C+WLFK+K+ E VR+KARLVAKG+TQ+EG+D
Sbjct: 767 EEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVD 826
Query: 701 YTEIFAPVVKFTTV 742
Y EIFAPV K T++
Sbjct: 827 YQEIFAPVAKHTSI 840
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 162 bits (410), Expect = 4e-42
Identities = 93/252 (36%), Positives = 140/252 (55%), Gaps = 5/252 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLP-ESEPAPNKVEQLL 178
F+GYP+GVKGY++W + + K I SRDV+F+ES SA + PA NK
Sbjct: 674 FVGYPDGVKGYKIWCKDQG--KCIVSRDVVFHESVLLKESAEHDAGLQDNPAANKRSG-- 729
Query: 179 GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQ 358
ET ++V + + A + ++++ +L NYQ
Sbjct: 730 -----SETSKVNVELLTDKSSEKEAA-------SDDERATAESEEHEVSELPQADLQNYQ 777
Query: 359 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEM 538
LARDR RR +R P R+ +I+Y + + EP + +A++S H +WL AM +EM
Sbjct: 778 LARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEM 837
Query: 539 NSLHVNNTWILVPKPENCSVVDCKWLFKVKNE----CESVRFKARLVAKGFTQKEGIDYT 706
SL N TW L+P P N +++CKW+FK +NE E ++KARLVA+GFTQ+EG+D+
Sbjct: 838 ESLQRNQTWTLIPNPGNKRLINCKWIFK-RNEGIPDVEPPKYKARLVARGFTQREGVDFN 896
Query: 707 EIFAPVVKFTTV 742
EIF+PVVK +++
Sbjct: 897 EIFSPVVKHSSI 908
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 162 bits (409), Expect = 6e-42
Identities = 94/257 (36%), Positives = 144/257 (56%), Gaps = 10/257 (3%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDF---PCLSATMPLPESEPAPNKVEQ 172
F+GYP G KGY++WL E K + SR+V+F+E + E+EPA +
Sbjct: 699 FIGYPAGTKGYKIWLLEE--HKCVISRNVLFHEESVYKDTMKKERVVESEAEPASHSKST 756
Query: 173 LLGLS---HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEP-E 340
L+ + +++ E + V E+V+ + + V+L + +
Sbjct: 757 LIKVKTPGNLNSGEVIQVSDEEESD-------------ESVEEEQEPETQVELPETQTTS 803
Query: 341 ELGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLN 520
L NYQLARDR RR I P RF + +++ E++ EP++YQ+A + ++W
Sbjct: 804 SLANYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKL 863
Query: 521 AMHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVKN---ECESVRFKARLVAKGFTQKE 691
A HEEM+SL N TW+LV KP+N ++ C+WLFK+K+ E VR+KA+LVAKG+T +E
Sbjct: 864 ATHEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHRE 923
Query: 692 GIDYTEIFAPVVKFTTV 742
G+DY EIFA VVK T++
Sbjct: 924 GVDYQEIFALVVKHTSI 940
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 161 bits (408), Expect = 8e-42
Identities = 95/252 (37%), Positives = 135/252 (53%), Gaps = 5/252 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLG 181
FLGYP G KGY++WL E K + SR+V+F ES L E + + Q
Sbjct: 689 FLGYPAGTKGYKVWLLEEE--KCVISRNVVFQES-----VVYRDLKVKEDDTDNLNQKET 741
Query: 182 LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELG--NY 355
S E E ++E + + P+ G Y
Sbjct: 742 TSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVEYSEKTQETPKRTGLTTY 801
Query: 356 QLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEE 535
+LARDR RRNI PTRF + +++ V E+ EP++YQ+A++S+ ++W A H+E
Sbjct: 802 KLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDE 861
Query: 536 MNSLHVNNTWILVPKPENCSVVDCKWLFKVKN---ECESVRFKARLVAKGFTQKEGIDYT 706
M+SL N TW LV KP++ ++ C+WLFK+K+ E RFKARLVAKG+TQ+EG+DY
Sbjct: 862 MDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQ 921
Query: 707 EIFAPVVKFTTV 742
EIFAPVVK ++
Sbjct: 922 EIFAPVVKHVSI 933
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 158 bits (400), Expect = 1e-40
Identities = 92/256 (35%), Positives = 140/256 (54%), Gaps = 9/256 (3%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVE 169
FLGYP GVKGY+LW K + SR+V+F+ES D P S +P+ E A +VE
Sbjct: 891 FLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVE 946
Query: 170 QLLGLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELG 349
L+ H E E++ + N D + D + P+
Sbjct: 947 HLISSGHAPEKEDVAI---------------------NQDEPVIEDSNSSIVQQSPKR-- 983
Query: 350 NYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNA 523
+A+DR +RNI+ P R+ ++ +++Y SV E I+ N EP TY +A+ S+ W+ A
Sbjct: 984 --SIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITA 1041
Query: 524 MHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEG 694
MH+EM SL N+TW LV P+ + CKW+FK K + + R+KARL+AKG++Q G
Sbjct: 1042 MHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPG 1101
Query: 695 IDYTEIFAPVVKFTTV 742
ID+ ++F+PVVK +++
Sbjct: 1102 IDFNDVFSPVVKHSSI 1117
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 157 bits (397), Expect = 2e-40
Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 9/256 (3%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLL- 178
FLGYP+GVK +++WL + K + SRD++F E+ + E + +VE+ L
Sbjct: 677 FLGYPDGVKRFKVWLLEDR--KCVVSRDIVFQENQMYKELQKNDMSEEDKQLTEVERTLI 734
Query: 179 ---GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELG 349
LS DE ++ + + D V+ D++ + L
Sbjct: 735 ELKNLSADDENQS-------------EGGDNSNQEQASTTRSASKDKQVEETDSDDDCLE 781
Query: 350 NYQLARDRTRRNIRQPTRF--DDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNA 523
NY LARDR RR IR P RF +D ++ + ++ E + EP+TY++A++S ++W A
Sbjct: 782 NYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQA 841
Query: 524 MHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVKNECESV---RFKARLVAKGFTQKEG 694
EEM+S+ N+TW ++ KPE V+ CKW+FK K V R+KARLVAKGF+Q+EG
Sbjct: 842 TIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREG 901
Query: 695 IDYTEIFAPVVKFTTV 742
IDY EIF+PVVK ++
Sbjct: 902 IDYQEIFSPVVKHVSI 917
>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 530
Score = 153 bits (387), Expect = 5e-40
Identities = 104/257 (40%), Positives = 136/257 (52%), Gaps = 10/257 (3%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAIT-SRDVIFNESDFPCLSATMPLPESEPAPNKVEQLL 178
FLGYP GVKGYRLW K I SRDV FNES + E +VE L
Sbjct: 63 FLGYPTGVKGYRLWCTENNRTKKIVISRDVTFNESAM--------FGQKE----EVENLA 110
Query: 179 GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQ 358
G ++ + V E D+ + + + V+ + N EE
Sbjct: 111 GNKSTNKGVHQKVEF------------------EVEDSNKENLNPVEQSSNVQEE--PQS 150
Query: 359 LARDRTRRNIRQPTRFDDF------QMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLN 520
+A RTRR IR+PTR+ D ++Y V E++D+ EPK+Y++A++S+ + +WL
Sbjct: 151 IATRRTRREIRKPTRYADVTNVVDTNSVAYALLVGENLDSDEPKSYKEAIQSKEASKWLI 210
Query: 521 AMHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVKNECESV---RFKARLVAKGFTQKE 691
AM EEM SL N TW LVP P V CKW+ K K V RFKARLVAKGF+QKE
Sbjct: 211 AMDEEMQSLKKNQTWELVPLPRGVKPVGCKWVLKRKEGIPGVEPSRFKARLVAKGFSQKE 270
Query: 692 GIDYTEIFAPVVKFTTV 742
GIDY E+F+PVVK T+
Sbjct: 271 GIDYHEVFSPVVKHKTI 287
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 155 bits (392), Expect = 1e-39
Identities = 89/251 (35%), Positives = 138/251 (54%), Gaps = 4/251 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLG 181
F+GY +GVKG+R+W E + I SR+V+F+ES L T+ P + +++ +
Sbjct: 662 FVGYGDGVKGFRIWSPAEK--RVIMSRNVVFDESP---LLRTIVKPTTTSETGSLDKQVE 716
Query: 182 LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 361
I +L PE D + D+ ++ P ++ + +
Sbjct: 717 FQVIQNESDLKE-------------------PEEEDQEPQTE--TDIPESMPSDI-HQSI 754
Query: 362 ARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEM 538
A+DR RR +R PTR+ M+ Y V E +D EP TY++A+ S S++W AM +EM
Sbjct: 755 AQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEM 814
Query: 539 NSLHVNNTWILVPKPENCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDYTE 709
SLH N TW LV +P ++ CKW+FK K + E V++KAR+VA+GF Q+EG+DY E
Sbjct: 815 ESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNE 874
Query: 710 IFAPVVKFTTV 742
IF+PVV+ T++
Sbjct: 875 IFSPVVRHTSI 885
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 155 bits (392), Expect = 1e-39
Identities = 97/256 (37%), Positives = 134/256 (52%), Gaps = 9/256 (3%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLG 181
FLGY GVKGYRLW + K I SRDV F+ES + L G
Sbjct: 783 FLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM------------FGQRKEFGDLAG 830
Query: 182 LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 361
S D N V M VD+ ++D ND++ +
Sbjct: 831 TSKTDLGANQKVEFEVDAP-----------MENGVDDTSEEQPVIDQNDSQ-------SI 872
Query: 362 ARDRTRRNIRQPTRFDDF------QMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNA 523
A R RR IR+P R+ D +++ +V E I EP++Y++A++S+ S++WL++
Sbjct: 873 AAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSS 932
Query: 524 MHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEG 694
M +EM SL N TW LVP PE VDCKWLFK+K+ E ++K+RLVAKGF+QKEG
Sbjct: 933 MDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEG 992
Query: 695 IDYTEIFAPVVKFTTV 742
IDY E+F+PVVK ++
Sbjct: 993 IDYNEVFSPVVKHKSI 1008
>gb|KYP62383.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 595
Score = 152 bits (384), Expect = 3e-39
Identities = 92/251 (36%), Positives = 136/251 (54%), Gaps = 4/251 (1%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPA-PNKVEQLL 178
F+GY +GVKGYR+W E K I SRDVIF+ES +P+ + + P +V ++
Sbjct: 297 FMGYGDGVKGYRIWSPSEK--KVILSRDVIFDESHLFHPKLEVPITATHNSHPPQVGKVE 354
Query: 179 GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQ 358
+S E ++L EN E H + EP+ +
Sbjct: 355 SISEKTEDKDL--------LDKFSEASQEEEQSENSSANESHQNA------EPDSIQLNP 400
Query: 359 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEM 538
+ +R I+ P R+ M +Y E ID+ EP TY++A+ +++W+ AM EEM
Sbjct: 401 GISQKPKRVIKPPERYGFEDMATYALHAAEEIDSDEPTTYKEAISHPEAEKWILAMREEM 460
Query: 539 NSLHVNNTWILVPKPENCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDYTE 709
SL+ N TW LV P+ VV CKW++K K +E E +R+KARLVAKGF+QKEG+D+ E
Sbjct: 461 ESLYKNQTWKLVELPKGRHVVGCKWIYKKKSIFSEKEEIRYKARLVAKGFSQKEGVDFNE 520
Query: 710 IFAPVVKFTTV 742
IF+PVV+ T++
Sbjct: 521 IFSPVVRHTSI 531
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 153 bits (386), Expect = 7e-39
Identities = 91/256 (35%), Positives = 140/256 (54%), Gaps = 9/256 (3%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVE 169
FLGY GVKGY+LW K + SR+V+F+ES D P S +P+ E A +VE
Sbjct: 656 FLGYASGVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVE 711
Query: 170 QLLGLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELG 349
L+ H E E++ + N D + D + P+
Sbjct: 712 HLISSGHAPEKEDVAI---------------------NQDAPVIEDSDSSIVHQSPKR-- 748
Query: 350 NYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNA 523
+A+D+ +RNI+ P R+ ++ ++++Y SV E I+ N EP TY +A+ S+ W+ A
Sbjct: 749 --SIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITA 806
Query: 524 MHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEG 694
MH+EM SL N+TW LV P+ + CKW+FK K + + R+KARLVAKG++Q G
Sbjct: 807 MHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPG 866
Query: 695 IDYTEIFAPVVKFTTV 742
ID+ ++F+PVVK +++
Sbjct: 867 IDFNDVFSPVVKHSSI 882
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 153 bits (386), Expect = 7e-39
Identities = 89/256 (34%), Positives = 140/256 (54%), Gaps = 9/256 (3%)
Frame = +2
Query: 2 FLGYPEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVE 169
FLGYP GVKGY+LW K + SR+V+F+ES D P S +P+ E A +VE
Sbjct: 719 FLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVE 774
Query: 170 QLLGLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELG 349
L+ H E EN+ + N D + D + + ++
Sbjct: 775 HLISSGHAPEKENVAI---------------------NQDAPVIEDS----DSSIVQQSS 809
Query: 350 NYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNA 523
+A+D+ +RNI+ P R+ ++ +++Y SV E I+ N EP TY +A+ S+ W+ A
Sbjct: 810 KRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITA 869
Query: 524 MHEEMNSLHVNNTWILVPKPENCSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEG 694
MH+EM SL N+TW V P+ + CKW+FK K + + R+KARLVAKG++Q G
Sbjct: 870 MHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPG 929
Query: 695 IDYTEIFAPVVKFTTV 742
ID+ ++F+P++K +++
Sbjct: 930 IDFNDVFSPIMKHSSI 945