BLASTX nr result
ID: Rehmannia27_contig00015879
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00015879
(520 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 179 3e-49
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 178 4e-49
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 178 7e-49
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana] 173 9e-49
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo... 173 1e-48
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 176 3e-48
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 176 5e-48
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo... 173 7e-48
ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei... 172 9e-48
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 172 1e-47
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 174 2e-47
ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 174 3e-47
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 173 4e-47
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 164 7e-47
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 172 1e-46
gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposo... 168 1e-46
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 171 4e-46
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 170 5e-46
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892... 170 5e-46
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024... 170 7e-46
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 179 bits (455), Expect = 3e-49
Identities = 85/168 (50%), Positives = 120/168 (71%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
+A+DR RR +R PTR+ M+ Y V E +D EP TY +A+ S S++W AM +E
Sbjct: 754 IAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDE 813
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYT 349
M SLH N TW LV +P+ ++ CKW+FK K + + V+YKAR+VA+GF Q+EG+DY
Sbjct: 814 MESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYN 873
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
EIF+PVV+ T++R++LA+ A N EL+Q+DVKTAFLHG+L+E+IYM Q
Sbjct: 874 EIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQ 921
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 178 bits (452), Expect = 4e-49
Identities = 85/167 (50%), Positives = 120/167 (71%), Gaps = 3/167 (1%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEM 181
LA+DR RR I P RF + +++ V ES+ EP++Y +A + + +W NA HEEM
Sbjct: 481 LAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEWLKWKNATHEEM 540
Query: 182 NSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN---DSVRYKARLVAKGFTQKEGIDYTE 352
+SL N TW LV KP N ++ C+WLFK+K+ + VR+KARLVAKG+TQ+EG+DY E
Sbjct: 541 DSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQREGVDYQE 600
Query: 353 IFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
IFAPVVK T++R+++++ + EL+QMDVKTAFLHGDL+E++YM Q
Sbjct: 601 IFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLHGDLEEELYMEQ 647
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 178 bits (452), Expect = 7e-49
Identities = 87/166 (52%), Positives = 118/166 (71%), Gaps = 3/166 (1%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEM 181
L RDR +R ++ P R+ +M ++ SV E I + EPKTY +A+ S + +W+ A+ EEM
Sbjct: 735 LVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEM 794
Query: 182 NSLHVNNTWILVPKPANCSVVDCKWLFKVKNE---NDSVRYKARLVAKGFTQKEGIDYTE 352
+SL N TW LV KP + VV KW+FK K N++ RYKARLVAKGF+QKEG+DY E
Sbjct: 795 DSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNE 854
Query: 353 IFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMR 490
IF+PVVK +++R++LA A + EL Q+DVKTAFLHG+LDE IYM+
Sbjct: 855 IFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQ 900
>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
Length = 494
Score = 173 bits (438), Expect = 9e-49
Identities = 82/167 (49%), Positives = 119/167 (71%), Gaps = 3/167 (1%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEM 181
LARDR RR I P RF + +++ E++ EP++Y +A ++ ++W A HEEM
Sbjct: 35 LARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSNKEWKKWKLATHEEM 94
Query: 182 NSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN---DSVRYKARLVAKGFTQKEGIDYTE 352
+SL N TW+LV KP + ++ C+WLFK+K+ + VRYKARLVAKG+TQ+EG+DY E
Sbjct: 95 DSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQE 154
Query: 353 IFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
IFAPV K T++RI++++ + EL+QMDVKTAFLHG+L+E++YM Q
Sbjct: 155 IFAPVAKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQ 201
>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 516
Score = 173 bits (438), Expect = 1e-48
Identities = 86/168 (51%), Positives = 117/168 (69%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSV-FESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
LARDR RR + P R+ ++S+ F+V + D+ EPK+Y +A++S+ WL AM EE
Sbjct: 306 LARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLKAMKEE 365
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN---DSVRYKARLVAKGFTQKEGIDYT 349
M SL N TWILV KP +V KW+FK K + R+K RLVA+GFTQ+EG+DY
Sbjct: 366 MGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQREGLDYK 425
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
EIF+PVVK ++R++LA+ F+ EL+QMDV+TAFLHG+LDE IYM+Q
Sbjct: 426 EIFSPVVKHNSIRMILAMVTHFDMELEQMDVRTAFLHGELDETIYMKQ 473
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 176 bits (447), Expect = 3e-48
Identities = 85/167 (50%), Positives = 120/167 (71%), Gaps = 3/167 (1%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEM 181
LARDR RRNI PTRF + +++ V E+ EP++Y +A++S+ ++W A H+EM
Sbjct: 803 LARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEM 862
Query: 182 NSLHVNNTWILVPKPANCSVVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYTE 352
+SL N TW LV KP + ++ C+WLFK+K+ V R+KARLVAKG+TQ+EG+DY E
Sbjct: 863 DSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQE 922
Query: 353 IFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
IFAPVVK ++RI+++L + EL+QMDVKT FLHGDL+E++YM Q
Sbjct: 923 IFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQ 969
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 176 bits (446), Expect = 5e-48
Identities = 86/173 (49%), Positives = 124/173 (71%), Gaps = 9/173 (5%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDF------QMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLN 163
+A R RR IR+P R+ D +++ +V E I EP++Y +A++S+ S++WL+
Sbjct: 872 IAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLS 931
Query: 164 AMHEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKN---ENDSVRYKARLVAKGFTQKE 334
+M +EM SL N TW LVP P VDCKWLFK+K+ ++ +YK+RLVAKGF+QKE
Sbjct: 932 SMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKE 991
Query: 335 GIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
GIDY E+F+PVVK ++R++LA+ + FN EL Q+DVKTAFLHG+L+E+IYM+Q
Sbjct: 992 GIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQ 1044
>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 634
Score = 173 bits (438), Expect = 7e-48
Identities = 86/168 (51%), Positives = 117/168 (69%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSV-FESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
LARDR RR + P R+ ++S+ F+V + D+ EPK+Y +A++S+ WL AM EE
Sbjct: 424 LARDRERRAHKAPQRYGHADLVSFAFTVGLDLEDHDEPKSYSEAMRSKDKNSWLKAMKEE 483
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN---DSVRYKARLVAKGFTQKEGIDYT 349
M SL N TWILV KP +V KW+FK K + R+K RLVA+GFTQ+EG+DY
Sbjct: 484 MGSLEKNQTWILVDKPKEQKIVGSKWIFKRKKGILGIEKARFKERLVARGFTQREGLDYK 543
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
EIF+PVVK ++R++LA+ F+ EL+QMDV+TAFLHG+LDE IYM+Q
Sbjct: 544 EIFSPVVKHNSIRMILAMVTHFDMELEQMDVRTAFLHGELDETIYMKQ 591
>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
1-94 [Erythranthe guttata]
Length = 598
Score = 172 bits (436), Expect = 9e-48
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Frame = +2
Query: 2 LARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
LARDR RR ++R+P FDDF + S+VF+VFES+D EPK+Y DALKS+ S EWLN+M++E
Sbjct: 488 LARDRPRREHVRKPKHFDDFHLASHVFNVFESLDGNEPKSYKDALKSDKSTEWLNSMNDE 547
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVKNENDSVRYKARLVAKGFTQK 331
MNSLHVN TW LVPKP NCSVVDC WLFKVKNE DS++YKARLVAKGFTQK
Sbjct: 548 MNSLHVNQTWELVPKPVNCSVVDCNWLFKVKNEVDSIKYKARLVAKGFTQK 598
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 172 bits (435), Expect = 1e-47
Identities = 82/167 (49%), Positives = 118/167 (70%), Gaps = 3/167 (1%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEM 181
LA+DR RR I P RF + +++ E++ EP++Y +A + ++W A HEEM
Sbjct: 34 LAKDRERREIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEM 93
Query: 182 NSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN---DSVRYKARLVAKGFTQKEGIDYTE 352
+SL N TW+LV KP + ++ C+WLFK+K+ + VRYKARLVAKG+TQ+EG+DY E
Sbjct: 94 DSLIKNGTWVLVDKPQDRKIIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQE 153
Query: 353 IFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
IFAPVVK T +RI++++ + EL+QMDVKTAFLHG+L+E++YM Q
Sbjct: 154 IFAPVVKHTFIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQ 200
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 174 bits (442), Expect = 2e-47
Identities = 87/168 (51%), Positives = 120/168 (71%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
LARD RR NIR P+RF+D ++Y + E ++ EPK+Y +ALKS ++W NAM EE
Sbjct: 696 LARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENAMKEE 755
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYT 349
M+S ++TW L+ KP ++ CKW+FK+K V RYKARLVAKGF+Q+EGIDY
Sbjct: 756 MDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGIDYN 815
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
E+F+ VVK ++R+ML+L ++EL+QMDVKTAFLHG+L+E+I M Q
Sbjct: 816 EVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLHGNLEERILMSQ 863
>ref|XP_009107606.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103833265
[Brassica rapa]
Length = 3353
Score = 174 bits (440), Expect = 3e-47
Identities = 85/168 (50%), Positives = 121/168 (72%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
LARDR RR N++ P+R++D +++Y SV + I+ EPK++ +A KS+ + W NA EE
Sbjct: 734 LARDRVRRQNVKPPSRYEDANLVAYALSVADDIEREEPKSFEEAKKSKDWKHWNNAADEE 793
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYT 349
M+SL+ N+TW L+ +P V CKW+FK K V R+K RLVAKGF+QKEGIDY
Sbjct: 794 MDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKGFSQKEGIDYN 853
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
E+F+PVVK ++R+ML++ ++EL+Q+DVKTAFLHG+LDE+I M Q
Sbjct: 854 EVFSPVVKHVSIRLMLSIVVNRDYELEQLDVKTAFLHGNLDERILMDQ 901
Score = 174 bits (440), Expect = 3e-47
Identities = 85/168 (50%), Positives = 121/168 (72%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
LARDR RR N++ P+R++D +++Y SV + I+ EPK++ +A KS+ + W NA EE
Sbjct: 1433 LARDRVRRQNVKPPSRYEDANLVAYALSVADDIEREEPKSFEEAKKSKDWKHWNNAADEE 1492
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYT 349
M+SL+ N+TW L+ +P V CKW+FK K V R+K RLVAKGF+QKEGIDY
Sbjct: 1493 MDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKGFSQKEGIDYN 1552
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
E+F+PVVK ++R+ML++ ++EL+Q+DVKTAFLHG+LDE+I M Q
Sbjct: 1553 EVFSPVVKHVSIRLMLSIVVNRDYELEQLDVKTAFLHGNLDERILMDQ 1600
Score = 174 bits (440), Expect = 3e-47
Identities = 85/168 (50%), Positives = 121/168 (72%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
LARDR RR N++ P+R++D +++Y SV + I+ EPK++ +A KS+ + W NA EE
Sbjct: 2809 LARDRVRRQNVKPPSRYEDANLVAYALSVADDIEREEPKSFEEAKKSKDWKHWNNAADEE 2868
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYT 349
M+SL+ N+TW L+ +P V CKW+FK K V R+K RLVAKGF+QKEGIDY
Sbjct: 2869 MDSLNRNHTWDLIERPKGQKTVGCKWIFKYKPGIPGVEPCRHKGRLVAKGFSQKEGIDYN 2928
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
E+F+PVVK ++R+ML++ ++EL+Q+DVKTAFLHG+LDE+I M Q
Sbjct: 2929 EVFSPVVKHVSIRLMLSIVVNRDYELEQLDVKTAFLHGNLDERILMDQ 2976
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 173 bits (439), Expect = 4e-47
Identities = 83/168 (49%), Positives = 118/168 (70%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEM 181
LARDR RR +R P R+ +I+Y + + EP + +A++S H +WL AM +EM
Sbjct: 778 LARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEM 837
Query: 182 NSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN----DSVRYKARLVAKGFTQKEGIDYT 349
SL N TW L+P P N +++CKW+FK +NE + +YKARLVA+GFTQ+EG+D+
Sbjct: 838 ESLQRNQTWTLIPNPGNKRLINCKWIFK-RNEGIPDVEPPKYKARLVARGFTQREGVDFN 896
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
EIF+PVVK +++RI+LA+ A + EL+QMDVKTAFLHG+L+E+I M Q
Sbjct: 897 EIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQ 944
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 164 bits (416), Expect = 7e-47
Identities = 81/168 (48%), Positives = 118/168 (70%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 LARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEE 178
LAR+R RR NIR P+RF D ++Y + E ++ EPK+Y +A+K ++W +AM EE
Sbjct: 168 LARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEPKSYEEAMKRSKRKQWESAMKEE 227
Query: 179 MNSLHVNNTWILVPKPANCSVVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYT 349
M+S ++TW L+ KP ++ CKW+FK+K + RYK RLVAKGF+Q+EGIDY
Sbjct: 228 MDSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGLEKQRYKVRLVAKGFSQQEGIDYN 287
Query: 350 EIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
E+F+ VVK ++R+ML+L ++EL+QMDVKT+FLHG+L+E+I M Q
Sbjct: 288 EVFSLVVKHVSIRLMLSLVVNMDYELEQMDVKTSFLHGNLEERILMSQ 335
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 172 bits (436), Expect = 1e-46
Identities = 87/167 (52%), Positives = 120/167 (71%), Gaps = 3/167 (1%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEM 181
+A D+ +RN R+P + F+ V SI +P TY DA++S S W+ AM EEM
Sbjct: 748 IALDKPKRN-RKPIQRFGFEPEEDVSRAL-SISQGDPTTYEDAIESVESAGWIGAMTEEM 805
Query: 182 NSLHVNNTWILVPKPANCSVVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYTE 352
SLH N+ W LVPKP +V CKW+F+ K +E+D++ YKARLVAKG++QKEG+DY E
Sbjct: 806 ESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDE 865
Query: 353 IFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
IF+PVVK T++R++L++ AQ++ E++QMDVKTAFLHGDL+E IYM Q
Sbjct: 866 IFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQ 912
>gb|KYP57305.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 530
Score = 168 bits (425), Expect = 1e-46
Identities = 85/173 (49%), Positives = 119/173 (68%), Gaps = 9/173 (5%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDF------QMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLN 163
+A RTRR IR+PTR+ D ++Y V E++D+ EPK+Y +A++S+ + +WL
Sbjct: 151 IATRRTRREIRKPTRYADVTNVVDTNSVAYALLVGENLDSDEPKSYKEAIQSKEASKWLI 210
Query: 164 AMHEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNENDSV---RYKARLVAKGFTQKE 334
AM EEM SL N TW LVP P V CKW+ K K V R+KARLVAKGF+QKE
Sbjct: 211 AMDEEMQSLKKNQTWELVPLPRGVKPVGCKWVLKRKEGIPGVEPSRFKARLVAKGFSQKE 270
Query: 335 GIDYTEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
GIDY E+F+PVVK T+R++LA+ + + +L+Q++VK AFLHG+L+E++YM Q
Sbjct: 271 GIDYHEVFSPVVKHKTIRVLLAMVSALDMKLEQLNVKIAFLHGNLEEQVYMSQ 323
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 171 bits (432), Expect = 4e-46
Identities = 81/169 (47%), Positives = 120/169 (71%), Gaps = 5/169 (2%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYHDALKSEHSQEWLNAMHE 175
+A+DR +RNI+ P R+ ++ +++Y SV E I+ N EP TY +A+ S+ W+ AMH+
Sbjct: 985 IAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 1044
Query: 176 EMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDY 346
EM SL N+TW LV P + CKW+FK K + +D RYKARL+AKG++Q GID+
Sbjct: 1045 EMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDF 1104
Query: 347 TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
++F+PVVK +++R +L++ A ++EL+QMDVKTAFLHG+L+E IYM Q
Sbjct: 1105 NDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 1153
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 170 bits (431), Expect = 5e-46
Identities = 81/167 (48%), Positives = 118/167 (70%), Gaps = 3/167 (1%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEM 181
LARDR RR I P RF + +++ E++ EP++Y +A + ++W A HEEM
Sbjct: 810 LARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHEEM 869
Query: 182 NSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN---DSVRYKARLVAKGFTQKEGIDYTE 352
+SL N TW+LV KP N ++ C+WLFK+K+ + + VRYKA+LVAKG+T +EG+DY E
Sbjct: 870 DSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREGVDYQE 929
Query: 353 IFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
IFA VVK T++RI++++ + EL+QMDVKTAFLHG+L+E++YM Q
Sbjct: 930 IFALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQ 976
>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris subsp.
vulgaris]
Length = 1947
Score = 170 bits (431), Expect = 5e-46
Identities = 84/148 (56%), Positives = 109/148 (73%), Gaps = 3/148 (2%)
Frame = +2
Query: 59 QMISYVFSVFESIDNCEPKTYHDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPKPANCS 238
+MI Y V E I++ EP +Y +A+ S S +WL AM EEM SLH N TW LV P
Sbjct: 887 EMIGYALHVAEDIESPEPMSYKEAVSSNESAKWLVAMSEEMESLHKNQTWELVRIPQGRK 946
Query: 239 VVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALCA 409
VV CKW+FK K +E +SVRYKARLVAKGF+Q+EG+DY EIF+PVV+ T++R++LA+ A
Sbjct: 947 VVGCKWVFKRKEGTSEGESVRYKARLVAKGFSQREGVDYNEIFSPVVRHTSIRVLLAMVA 1006
Query: 410 QFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
F+ EL+Q+DVKTAFLHG+L+E I M Q
Sbjct: 1007 HFDLELEQLDVKTAFLHGELEEDILMSQ 1034
>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
Length = 1892
Score = 170 bits (430), Expect = 7e-46
Identities = 87/169 (51%), Positives = 119/169 (70%), Gaps = 5/169 (2%)
Frame = +2
Query: 2 LARDRTRRNIRQPTRF-DDFQMISYVF-SVFESIDNCEPKTYHDALKSEHSQEWLNAMHE 175
+A+ R +R IR+P R + +I+ F + E I + EP +Y +A + + +W AM E
Sbjct: 1340 IAKGRDKRRIRKPERLIEQENLIAQAFVAAEEEIKDLEPSSYIEATSCKDAAQWQLAMME 1399
Query: 176 EMNSLHVNNTWILVPKPANCSVVDCKWLFKVKN---ENDSVRYKARLVAKGFTQKEGIDY 346
EM SLH N TW+LV +P V CKW++K K E ++ R+KARLVAKGF+QKEGIDY
Sbjct: 1400 EMESLHRNETWVLVKRPKGMRTVGCKWVYKKKEGIPEVEAARFKARLVAKGFSQKEGIDY 1459
Query: 347 TEIFAPVVKFTTVRIMLALCAQFNWELKQMDVKTAFLHGDLDEKIYMRQ 493
EIF+PVVK +++R++LAL AQF+ EL+Q+DVKTAFLHGDL+E IYM Q
Sbjct: 1460 NEIFSPVVKHSSIRVLLALVAQFDLELQQLDVKTAFLHGDLEETIYMDQ 1508