BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00014569
         (1372 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011083427.1| PREDICTED: RNA pseudouridine synthase 2, chl...   689   0.0  
ref|XP_012829598.1| PREDICTED: RNA pseudouridine synthase 2, chl...   664   0.0  
gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Erythra...   664   0.0  
ref|XP_009798870.1| PREDICTED: RNA pseudouridine synthase 2, chl...   560   0.0  
ref|XP_004238386.1| PREDICTED: RNA pseudouridine synthase 2, chl...   558   0.0  
ref|XP_010320443.1| PREDICTED: RNA pseudouridine synthase 2, chl...   556   0.0  
ref|XP_009620048.1| PREDICTED: RNA pseudouridine synthase 2, chl...   555   0.0  
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...   551   0.0  
ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chl...   551   0.0  
ref|XP_015073899.1| PREDICTED: RNA pseudouridine synthase 2, chl...   550   0.0  
ref|XP_015073900.1| PREDICTED: RNA pseudouridine synthase 2, chl...   548   0.0  
ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chl...   548   0.0  
ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chl...   548   0.0  
ref|XP_003634352.1| PREDICTED: RNA pseudouridine synthase 2, chl...   543   0.0  
emb|CDP07347.1| unnamed protein product [Coffea canephora]            543   0.0  
ref|XP_015887376.1| PREDICTED: RNA pseudouridine synthase 2, chl...   541   0.0  
ref|XP_010320444.1| PREDICTED: RNA pseudouridine synthase 2, chl...   540   0.0  
ref|XP_008445320.1| PREDICTED: RNA pseudouridine synthase 2, chl...   533   0.0  
ref|XP_008445318.1| PREDICTED: RNA pseudouridine synthase 2, chl...   530   0.0  
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   529   0.0  

>ref|XP_011083427.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Sesamum
            indicum]
          Length = 445

 Score =  689 bits (1779), Expect = 0.0
 Identities = 352/444 (79%), Positives = 386/444 (86%), Gaps = 2/444 (0%)
 Frame = +3

Query: 15   MLSPQSLSWHSVKPLSISLRNPSLQKLISTARAYSTSISAANFDSDDFQNPVSGRPNNFS 194
            MLS  SL  +S KPL I+ RN SL+K+ISTA AYS S +AAN +SDDFQ P SGRPNN+S
Sbjct: 1    MLSLHSLYLNSAKPLPINPRNLSLRKIISTACAYSKSYAAANSESDDFQGPFSGRPNNYS 60

Query: 195  GFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGD 374
            G KIEE VELDS KLRLDSW+SSRINGISRARVQSSIRSGLVSVNGH+I+KVSHVVRDGD
Sbjct: 61   GVKIEEKVELDSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGHVIDKVSHVVRDGD 120

Query: 375  VVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPA--HMVVHPAPGNATGTLVNGILN 548
            VVNC IAELQPLRAE EDIPLDIVYEDEHVLVVNKP    +VVHPAPGNA+GTLVNGIL 
Sbjct: 121  VVNCTIAELQPLRAEAEDIPLDIVYEDEHVLVVNKPVLQFVVVHPAPGNASGTLVNGILR 180

Query: 549  HCRLSTVFLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTS 728
            HCRLSTV L+PEA PE  DDS DE SAFSVDQG  V IG G  E+SVRPGIVHRLDKGTS
Sbjct: 181  HCRLSTVCLNPEAQPEIVDDSEDEVSAFSVDQGENVGIGSGLYESSVRPGIVHRLDKGTS 240

Query: 729  GLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIAN 908
            GLLVVAKDEHSH+ LAEQFK+ TIKRVYVSLTCGVPSP +GRIDVPIGRD  NRIRMIA 
Sbjct: 241  GLLVVAKDEHSHACLAEQFKERTIKRVYVSLTCGVPSPATGRIDVPIGRDANNRIRMIAI 300

Query: 909  PGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYG 1088
            PGSAT GKARHAVSRYKVIEILAGGGCALV+WRLETGRTHQIRAHAKY+G+PLLGDDVYG
Sbjct: 301  PGSATHGKARHAVSRYKVIEILAGGGCALVEWRLETGRTHQIRAHAKYIGVPLLGDDVYG 360

Query: 1089 GTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 1268
            GTK+M +SLLQS+NPP+ H  +LQLV +L+RPCLHA SLGFRHP++GE+LRFSQIPP DF
Sbjct: 361  GTKSMAMSLLQSKNPPTTHRQLLQLVERLDRPCLHAFSLGFRHPNSGEDLRFSQIPPADF 420

Query: 1269 GEILDQLRDIGTKTVT*LVGHSKL 1340
             EILD+LRDIG K  T  + + K+
Sbjct: 421  AEILDRLRDIGAKKGTSSIQYKKV 444


>ref|XP_012829598.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Erythranthe guttata] gi|604297299|gb|EYU17563.1|
            hypothetical protein MIMGU_mgv1a006781mg [Erythranthe
            guttata]
          Length = 422

 Score =  664 bits (1712), Expect = 0.0
 Identities = 336/435 (77%), Positives = 373/435 (85%), Gaps = 2/435 (0%)
 Frame = +3

Query: 15   MLSPQSLSWHSVKPLSISLRNPSLQKLISTARAYSTSISAANFDSDDFQNPVSGRPNNFS 194
            MLS QSL+W S+KP  I+ RNP+  +L+ST+ AY  SI A   DSDD Q+ +SGRPNNFS
Sbjct: 1    MLSLQSLNWSSIKPFPINPRNPAFWRLLSTSSAYPDSIPADYSDSDDSQDSISGRPNNFS 60

Query: 195  GFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGD 374
            G KIEETV LDS KLR+DSW+SSRINGISRARVQSSIRSGLVSVNGH+I+KVSHVVRDGD
Sbjct: 61   GHKIEETVALDSAKLRVDSWISSRINGISRARVQSSIRSGLVSVNGHVISKVSHVVRDGD 120

Query: 375  VVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHC 554
             VNC IAELQPLRAEPE+IPLDIVYED+H+LVVNKPAHMVVHPAPGNA GTLVNGIL+HC
Sbjct: 121  SVNCTIAELQPLRAEPENIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNGILHHC 180

Query: 555  RLSTVFLSPEALPET--DDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTS 728
            RLSTV  +PE+LP+   DDDS DEA+ F              SE+SVRPGIVHRLDKGTS
Sbjct: 181  RLSTVCFNPESLPDNIDDDDSIDEATVFP-------------SESSVRPGIVHRLDKGTS 227

Query: 729  GLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIAN 908
            GLLVVAKDEHSHSHLAEQFKKHT+KRVYVSLTCGVPSP+SGR+D+PIGRD  NRIRM+A 
Sbjct: 228  GLLVVAKDEHSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAI 287

Query: 909  PGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYG 1088
            PGSA  GKARHAVSRYKV+EILAGGGCALV+WRLETGRTHQIRAHAKYLGIPLLGDDVYG
Sbjct: 288  PGSALHGKARHAVSRYKVVEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYG 347

Query: 1089 GTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 1268
            GTK+M LS LQS+N  SY+G I QLVAKLERP LHALSLGFRHPH GE+L FSQ+PP DF
Sbjct: 348  GTKHMALSQLQSKNSSSYYGQIHQLVAKLERPSLHALSLGFRHPHKGEDLHFSQMPPFDF 407

Query: 1269 GEILDQLRDIGTKTV 1313
             EILD LR+I ++ V
Sbjct: 408  AEILDCLRNISSEKV 422


>gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Erythranthe guttata]
          Length = 432

 Score =  664 bits (1713), Expect = 0.0
 Identities = 338/450 (75%), Positives = 377/450 (83%), Gaps = 2/450 (0%)
 Frame = +3

Query: 15   MLSPQSLSWHSVKPLSISLRNPSLQKLISTARAYSTSISAANFDSDDFQNPVSGRPNNFS 194
            MLS QSL+W S+KP  I+ RNP+  +L+ST+ AY  SI A   DSDD Q+ +SGRPNNFS
Sbjct: 1    MLSLQSLNWSSIKPFPINPRNPAFWRLLSTSSAYPDSIPADYSDSDDSQDSISGRPNNFS 60

Query: 195  GFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGD 374
            G KIEETV LDS KLR+DSW+SSRINGISRARVQSSIRSGLVSVNGH+I+KVSHVVRDGD
Sbjct: 61   GHKIEETVALDSAKLRVDSWISSRINGISRARVQSSIRSGLVSVNGHVISKVSHVVRDGD 120

Query: 375  VVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHC 554
             VNC IAELQPLRAEPE+IPLDIVYED+H+LVVNKPAHMVVHPAPGNA GTLVNGIL+HC
Sbjct: 121  SVNCTIAELQPLRAEPENIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGTLVNGILHHC 180

Query: 555  RLSTVFLSPEALPET--DDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTS 728
            RLSTV  +PE+LP+   DDDS DEA+ F              SE+SVRPGIVHRLDKGTS
Sbjct: 181  RLSTVCFNPESLPDNIDDDDSIDEATVFP-------------SESSVRPGIVHRLDKGTS 227

Query: 729  GLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIAN 908
            GLLVVAKDEHSHSHLAEQFKKHT+KRVYVSLTCGVPSP+SGR+D+PIGRD  NRIRM+A 
Sbjct: 228  GLLVVAKDEHSHSHLAEQFKKHTVKRVYVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAI 287

Query: 909  PGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYG 1088
            PGSA  GKARHAVSRYKV+EILAGGGCALV+WRLETGRTHQIRAHAKYLGIPLLGDDVYG
Sbjct: 288  PGSALHGKARHAVSRYKVVEILAGGGCALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYG 347

Query: 1089 GTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDF 1268
            GTK+M LS LQS+N  SY+G I QLVAKLERP LHALSLGFRHPH GE+L FSQ+PP DF
Sbjct: 348  GTKHMALSQLQSKNSSSYYGQIHQLVAKLERPSLHALSLGFRHPHKGEDLHFSQMPPFDF 407

Query: 1269 GEILDQLRDIGTKTVT*LVGHSKLWFKCFL 1358
             EILD LR+I ++ +         W +C L
Sbjct: 408  AEILDCLRNISSEKM------QVCWMRCSL 431


>ref|XP_009798870.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            sylvestris]
          Length = 431

 Score =  560 bits (1444), Expect = 0.0
 Identities = 282/392 (71%), Positives = 328/392 (83%), Gaps = 2/392 (0%)
 Frame = +3

Query: 144  DSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVS 323
            DSDD  + ++GR +N+SG K+EETV++ + KLRLDSW+SSRINGISRARVQSSIRSGLVS
Sbjct: 40   DSDDSPSEITGRRSNYSGVKLEETVDVKTGKLRLDSWVSSRINGISRARVQSSIRSGLVS 99

Query: 324  VNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHP 503
            VNG + +KVSH V+ GD VNC IA+L+PLRAEPEDIPLDIVYED+HVLVVNKPAHMVVHP
Sbjct: 100  VNGRVTDKVSHTVKGGDKVNCTIADLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHP 159

Query: 504  APGNATGTLVNGILNHCRLSTV-FLSPEALPETDDDSGDEASAFSVDQG-HTVDIGFGFS 677
            APGNATGTLV+GIL+HC L TV F   E L + +DDS DE + FS DQ  + VD      
Sbjct: 160  APGNATGTLVSGILHHCSLPTVSFPGEEVLSDVEDDSDDELNLFSTDQSPYGVDSSV-VC 218

Query: 678  EASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRI 857
            E SVRPGIVHRLDKGTSGLLVVAK E S ++LAEQFKKHTIKRVYVS+TCGVP+ +SGRI
Sbjct: 219  EPSVRPGIVHRLDKGTSGLLVVAKTEQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRI 278

Query: 858  DVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIR 1037
            D+PIGRD  NRIRMIA PGS   G+AR+A SRYKVIE LAGGG ALV+WRLETGRTHQIR
Sbjct: 279  DIPIGRDSNNRIRMIAIPGSHKGGRARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIR 338

Query: 1038 AHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRH 1217
            AHAKYLGIPLLGD+VYGGTKNM LSLLQ + PP  HG + QL++ +ERPCLHAL+LGFRH
Sbjct: 339  AHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPPRSHGKLSQLISGIERPCLHALTLGFRH 398

Query: 1218 PHTGENLRFSQIPPTDFGEILDQLRDIGTKTV 1313
            P+TGEN+ F+++PP DF E+L +LR I T+ V
Sbjct: 399  PYTGENIHFTRLPPADFAEVLSELRAISTEKV 430


>ref|XP_004238386.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 436

 Score =  558 bits (1437), Expect = 0.0
 Identities = 282/419 (67%), Positives = 337/419 (80%), Gaps = 6/419 (1%)
 Frame = +3

Query: 78   PSLQKLISTARAYSTSISA-----ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLR 242
            P   K IS +R  S    A      + DSDD  + + GR +N+SG K+EETV+  + KLR
Sbjct: 13   PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLR 72

Query: 243  LDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEP 422
            LDSW+SSRI+G+SRARVQSSIRSGLVSVNG + +KVSH+V+ GD V+C IA+L+PLRAEP
Sbjct: 73   LDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEP 132

Query: 423  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPET 599
            EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLV+GIL+HC L TV F   E L + 
Sbjct: 133  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDG 192

Query: 600  DDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAE 779
            +D S DE + FS ++    D      E+SVRPGIVHRLDKGTSGLLVVAK+EHS + LAE
Sbjct: 193  EDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAE 252

Query: 780  QFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYK 959
            QFKKHTIKRVYVS+TCGVP+ ++GR+D+PIGRD  NRIRM A PG+   GK+RHAVSRYK
Sbjct: 253  QFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYK 312

Query: 960  VIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPS 1139
            VIE LAGGG ALV+WRLETGRTHQIRAHAK+LGIPL+GD+VYGGTKNM LSLLQ + PP 
Sbjct: 313  VIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPM 372

Query: 1140 YHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIGTKTVT 1316
            +HG + QLV++++RPCLHAL+LGFRHP TGEN+ F+++PP DF EIL +LR I T+ VT
Sbjct: 373  FHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEKVT 431


>ref|XP_010320443.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 431

 Score =  556 bits (1432), Expect = 0.0
 Identities = 281/418 (67%), Positives = 336/418 (80%), Gaps = 6/418 (1%)
 Frame = +3

Query: 78   PSLQKLISTARAYSTSISA-----ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLR 242
            P   K IS +R  S    A      + DSDD  + + GR +N+SG K+EETV+  + KLR
Sbjct: 13   PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLR 72

Query: 243  LDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEP 422
            LDSW+SSRI+G+SRARVQSSIRSGLVSVNG + +KVSH+V+ GD V+C IA+L+PLRAEP
Sbjct: 73   LDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEP 132

Query: 423  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPET 599
            EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLV+GIL+HC L TV F   E L + 
Sbjct: 133  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDG 192

Query: 600  DDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAE 779
            +D S DE + FS ++    D      E+SVRPGIVHRLDKGTSGLLVVAK+EHS + LAE
Sbjct: 193  EDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAE 252

Query: 780  QFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYK 959
            QFKKHTIKRVYVS+TCGVP+ ++GR+D+PIGRD  NRIRM A PG+   GK+RHAVSRYK
Sbjct: 253  QFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYK 312

Query: 960  VIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPS 1139
            VIE LAGGG ALV+WRLETGRTHQIRAHAK+LGIPL+GD+VYGGTKNM LSLLQ + PP 
Sbjct: 313  VIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPM 372

Query: 1140 YHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIGTKTV 1313
            +HG + QLV++++RPCLHAL+LGFRHP TGEN+ F+++PP DF EIL +LR I T+ V
Sbjct: 373  FHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEKV 430


>ref|XP_009620048.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 431

 Score =  555 bits (1431), Expect = 0.0
 Identities = 281/419 (67%), Positives = 333/419 (79%), Gaps = 6/419 (1%)
 Frame = +3

Query: 75   NPSLQKLISTARAYSTSISA-----ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKL 239
            +P   K  S +R  S  I A      + DSDD  + +  R +N+SG K+EETV++ + KL
Sbjct: 12   HPQNPKPFSFSRVSSFIIRAFSKFPGDSDSDDSPDEIQSRKSNYSGVKLEETVDIKTGKL 71

Query: 240  RLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAE 419
            RLDSW+SSRI+GISRARVQSSIRSGLVSVNG + +KVSH V+ GD VNC IA+L+PLRAE
Sbjct: 72   RLDSWVSSRIDGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAE 131

Query: 420  PEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPE 596
            PEDIPLDIVYED+HVLVVNKPAHMVVHPAPGN TGTLV+GIL+HC L T+ F   E L +
Sbjct: 132  PEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNVTGTLVSGILHHCSLPTISFPGEEVLSD 191

Query: 597  TDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLA 776
             +D SGDE + FS DQ           E S+RPGIVHRLDKGTSGLLVVAK E S ++LA
Sbjct: 192  VEDASGDELNMFSADQSPNGVDASRMYEPSIRPGIVHRLDKGTSGLLVVAKTEQSLANLA 251

Query: 777  EQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRY 956
            EQFKKHTIKRVYVS+TCGVP+ +SGRID+PIGRD  NRIRM+A PGS   G+AR+A SRY
Sbjct: 252  EQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRY 311

Query: 957  KVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPP 1136
            KVIE LAGGG ALV+WRLETGRTHQIRAHAKYLGIPLLGD+VYGGTKNM LSLLQ + PP
Sbjct: 312  KVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPP 371

Query: 1137 SYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIGTKTV 1313
              HG++ QL++ +ERPCLHAL+LGFRHP+TGEN+ F+++PP DF E+L +LR I T+ V
Sbjct: 372  RSHGNLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLTELRAISTEKV 430


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum tuberosum]
          Length = 431

 Score =  551 bits (1421), Expect = 0.0
 Identities = 272/391 (69%), Positives = 326/391 (83%), Gaps = 1/391 (0%)
 Frame = +3

Query: 144  DSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVS 323
            DSDD  + + GR +N+SG K+EETV+  + KLRLDSW+SSRI+G+SRARVQSSIRSGLVS
Sbjct: 40   DSDDSPDEIPGRRSNYSGVKLEETVDGKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVS 99

Query: 324  VNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHP 503
            VNG + +KVSH+V+ GD V+C IA+L+PLRAEPEDIPLDIV+EDEHVLVVNKPAHMVVHP
Sbjct: 100  VNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFEDEHVLVVNKPAHMVVHP 159

Query: 504  APGNATGTLVNGILNHCRLSTV-FLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSE 680
            APGNATGTLV+GIL+HC L T+ FL  E L + +D S DE + FS ++    D      E
Sbjct: 160  APGNATGTLVSGILHHCSLPTISFLGEEVLSDAEDASDDELNVFSGNRSPNYDDSSVMCE 219

Query: 681  ASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRID 860
            +SVRPGIVHRLDKGTSGLLVVAK+E+S + LAEQFKKHTIKRVYVS+TCGVP+ ++GR+D
Sbjct: 220  SSVRPGIVHRLDKGTSGLLVVAKNENSLASLAEQFKKHTIKRVYVSITCGVPASVAGRVD 279

Query: 861  VPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRA 1040
            +PIGRD  NRIRM A PG+   GK+RHAVSRYKVIE LA GG ALV+WRLETGRTHQIRA
Sbjct: 280  IPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKLARGGSALVEWRLETGRTHQIRA 339

Query: 1041 HAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHP 1220
            HAKYLGIPL+GD+VYGGTKNM LSLLQ + PP +HG + QLV++++RPCLHAL+LGFRHP
Sbjct: 340  HAKYLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHP 399

Query: 1221 HTGENLRFSQIPPTDFGEILDQLRDIGTKTV 1313
             TGEN+ F+++PP DF EIL  LR I T+ V
Sbjct: 400  FTGENIHFTRLPPPDFAEILSYLRAINTEKV 430


>ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nelumbo nucifera]
          Length = 471

 Score =  551 bits (1421), Expect = 0.0
 Identities = 284/416 (68%), Positives = 330/416 (79%), Gaps = 1/416 (0%)
 Frame = +3

Query: 117  STSISAANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQ 296
            ST  SA+++ S + QN    R  NF+G  +E+TVE+ S K R+DSW+SSRI GISRARVQ
Sbjct: 45   STGESASDYQSSEPQN----RRGNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQ 100

Query: 297  SSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVN 476
            SSI+SGLVSVNG II+KVSHV+R GD VNC I ELQPLRAEPEDIPLDIVYEDE VLVVN
Sbjct: 101  SSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVN 160

Query: 477  KPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLS-PEALPETDDDSGDEASAFSVDQGHT 653
            KPAHMVVHPAPGNA GTLVNGIL+HC L  V L+  + L ETDD S DE+  FS  QG  
Sbjct: 161  KPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSM 220

Query: 654  VDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGV 833
             ++     E SVRPGIVHRLDKGTSGLLVVAKDEHSH+HL+EQFK HTI R+Y+SLTCGV
Sbjct: 221  EEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGV 280

Query: 834  PSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLE 1013
            PS  SGRI+VPIGRD  NRIRM A P   +  +ARHA SRY+V+E+LAGGG ALV+WRLE
Sbjct: 281  PSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLE 340

Query: 1014 TGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLH 1193
            TGRTHQIRAHAKYLGIPLLGD+VYGGT+NM LSLL++R+  S+HG + QLV+KL+RPCLH
Sbjct: 341  TGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLH 400

Query: 1194 ALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIGTKTVT*LVGHSKLWFKCFLC 1361
            A +LGF+HPHTGEN++FS  PP DF E+L QLR IG + V    GH+     C LC
Sbjct: 401  AFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIGIEKVFGGQGHA-----CQLC 451


>ref|XP_015073899.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum pennellii]
          Length = 436

 Score =  550 bits (1417), Expect = 0.0
 Identities = 279/419 (66%), Positives = 333/419 (79%), Gaps = 6/419 (1%)
 Frame = +3

Query: 78   PSLQKLISTARAYSTSISA-----ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLR 242
            P   K IS +R  S    A      + DSDD  + + GR +N+SG K+EETV+  + KLR
Sbjct: 13   PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLR 72

Query: 243  LDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEP 422
            LDSW+SSRI+G+SRARVQSSIRSGLV VNG + +KVSH+V+ GD V+C IA+L+PLRAEP
Sbjct: 73   LDSWVSSRIDGVSRARVQSSIRSGLVFVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEP 132

Query: 423  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPET 599
            EDIPLDIVYED+HVLVVNKPAHMVVHPAPGNATGTLV+GIL+HC L TV F   E L + 
Sbjct: 133  EDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDG 192

Query: 600  DDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAE 779
            +D S DE + FS  +    D      E+SVRPGIVHRLDKGTSGLLVVAK+EHS + LAE
Sbjct: 193  EDASDDELNMFSAYRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAE 252

Query: 780  QFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYK 959
            QFKKHTIKRVYVS+TCGVP+ ++GR+D+PIGRD  NRIRM A PG+   GK+RHAVSRYK
Sbjct: 253  QFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYK 312

Query: 960  VIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPS 1139
            VIE LAGG  ALV+WRLETGRTHQIRAHAK+LGIPL+GD+VYGGTKNM LSLLQ + PP 
Sbjct: 313  VIEKLAGGSSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPM 372

Query: 1140 YHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIGTKTVT 1316
            +HG + QLV++++RPCLHAL+LGFRHP TGENL  +++PP DF EIL +LR I T+ VT
Sbjct: 373  FHGKLSQLVSQIDRPCLHALTLGFRHPFTGENLHITRLPPPDFAEILSELRAINTEKVT 431


>ref|XP_015073900.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum pennellii]
          Length = 431

 Score =  548 bits (1412), Expect = 0.0
 Identities = 278/418 (66%), Positives = 332/418 (79%), Gaps = 6/418 (1%)
 Frame = +3

Query: 78   PSLQKLISTARAYSTSISA-----ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLR 242
            P   K IS +R  S    A      + DSDD  + + GR +N+SG K+EETV+  + KLR
Sbjct: 13   PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLR 72

Query: 243  LDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEP 422
            LDSW+SSRI+G+SRARVQSSIRSGLV VNG + +KVSH+V+ GD V+C IA+L+PLRAEP
Sbjct: 73   LDSWVSSRIDGVSRARVQSSIRSGLVFVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEP 132

Query: 423  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPET 599
            EDIPLDIVYED+HVLVVNKPAHMVVHPAPGNATGTLV+GIL+HC L TV F   E L + 
Sbjct: 133  EDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDG 192

Query: 600  DDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAE 779
            +D S DE + FS  +    D      E+SVRPGIVHRLDKGTSGLLVVAK+EHS + LAE
Sbjct: 193  EDASDDELNMFSAYRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAE 252

Query: 780  QFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYK 959
            QFKKHTIKRVYVS+TCGVP+ ++GR+D+PIGRD  NRIRM A PG+   GK+RHAVSRYK
Sbjct: 253  QFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYK 312

Query: 960  VIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPS 1139
            VIE LAGG  ALV+WRLETGRTHQIRAHAK+LGIPL+GD+VYGGTKNM LSLLQ + PP 
Sbjct: 313  VIEKLAGGSSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPM 372

Query: 1140 YHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIGTKTV 1313
            +HG + QLV++++RPCLHAL+LGFRHP TGENL  +++PP DF EIL +LR I T+ V
Sbjct: 373  FHGKLSQLVSQIDRPCLHALTLGFRHPFTGENLHITRLPPPDFAEILSELRAINTEKV 430


>ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  548 bits (1412), Expect = 0.0
 Identities = 278/396 (70%), Positives = 322/396 (81%), Gaps = 1/396 (0%)
 Frame = +3

Query: 117  STSISAANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQ 296
            ST  SA+++ S + QN    R  NF+G  +E+TVE+ S K R+DSW+SSRI GISRARVQ
Sbjct: 45   STGESASDYQSSEPQN----RRGNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQ 100

Query: 297  SSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVN 476
            SSI+SGLVSVNG II+KVSHV+R GD VNC I ELQPLRAEPEDIPLDIVYEDE VLVVN
Sbjct: 101  SSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVN 160

Query: 477  KPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLS-PEALPETDDDSGDEASAFSVDQGHT 653
            KPAHMVVHPAPGNA GTLVNGIL+HC L  V L+  + L ETDD S DE+  FS  QG  
Sbjct: 161  KPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSM 220

Query: 654  VDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGV 833
             ++     E SVRPGIVHRLDKGTSGLLVVAKDEHSH+HL+EQFK HTI R+Y+SLTCGV
Sbjct: 221  EEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGV 280

Query: 834  PSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLE 1013
            PS  SGRI+VPIGRD  NRIRM A P   +  +ARHA SRY+V+E+LAGGG ALV+WRLE
Sbjct: 281  PSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLE 340

Query: 1014 TGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLH 1193
            TGRTHQIRAHAKYLGIPLLGD+VYGGT+NM LSLL++R+  S+HG + QLV+KL+RPCLH
Sbjct: 341  TGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLH 400

Query: 1194 ALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIG 1301
            A +LGF+HPHTGEN++FS  PP DF E+L QLR IG
Sbjct: 401  AFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIG 436


>ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  548 bits (1412), Expect = 0.0
 Identities = 278/396 (70%), Positives = 322/396 (81%), Gaps = 1/396 (0%)
 Frame = +3

Query: 117  STSISAANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQ 296
            ST  SA+++ S + QN    R  NF+G  +E+TVE+ S K R+DSW+SSRI GISRARVQ
Sbjct: 45   STGESASDYQSSEPQN----RRGNFAGVCLEDTVEISSVKSRIDSWISSRIPGISRARVQ 100

Query: 297  SSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVN 476
            SSI+SGLVSVNG II+KVSHV+R GD VNC I ELQPLRAEPEDIPLDIVYEDE VLVVN
Sbjct: 101  SSIKSGLVSVNGRIIDKVSHVIRAGDKVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVN 160

Query: 477  KPAHMVVHPAPGNATGTLVNGILNHCRLSTVFLS-PEALPETDDDSGDEASAFSVDQGHT 653
            KPAHMVVHPAPGNA GTLVNGIL+HC L  V L+  + L ETDD S DE+  FS  QG  
Sbjct: 161  KPAHMVVHPAPGNANGTLVNGILHHCSLPMVALTNSKVLSETDDISDDESDIFSSTQGSM 220

Query: 654  VDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGV 833
             ++     E SVRPGIVHRLDKGTSGLLVVAKDEHSH+HL+EQFK HTI R+Y+SLTCGV
Sbjct: 221  EEVTSNICEVSVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGV 280

Query: 834  PSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLE 1013
            PS  SGRI+VPIGRD  NRIRM A P   +  +ARHA SRY+V+E+LAGGG ALV+WRLE
Sbjct: 281  PSLNSGRIEVPIGRDLSNRIRMAAVPSPNSSRQARHAASRYRVVEVLAGGGSALVEWRLE 340

Query: 1014 TGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLH 1193
            TGRTHQIRAHAKYLGIPLLGD+VYGGT+NM LSLL++R+  S+HG + QLV+KL+RPCLH
Sbjct: 341  TGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSHSSFHGDLSQLVSKLQRPCLH 400

Query: 1194 ALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIG 1301
            A +LGF+HPHTGEN++FS  PP DF E+L QLR IG
Sbjct: 401  AFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRSIG 436


>ref|XP_003634352.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Vitis vinifera] gi|302141717|emb|CBI18920.3| unnamed
            protein product [Vitis vinifera]
          Length = 433

 Score =  543 bits (1399), Expect = 0.0
 Identities = 289/439 (65%), Positives = 336/439 (76%), Gaps = 8/439 (1%)
 Frame = +3

Query: 15   MLSPQSLSWHSVKPLSISL----RNP-SLQKLISTARAYSTSISAANFDSDDFQNPVSGR 179
            + S  S S+ S+   S S     RNP S  ++    RA S S       +D+    VSGR
Sbjct: 2    IFSLNSASFFSISHTSQSALLFPRNPKSCSRVFRILRACSNS-------TDEPLVSVSGR 54

Query: 180  PNNFSGFKIEETV---ELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKV 350
              N++G ++EETV     DS KLRLDSW+SSRI GISRARVQSSIRSGLVSVN  I++KV
Sbjct: 55   RTNYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKV 114

Query: 351  SHVVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTL 530
            SHV+R GD VNC I+ELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNA+GTL
Sbjct: 115  SHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTL 174

Query: 531  VNGILNHCRLSTVFLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHR 710
            VNGIL+HC L TV L P    E DD S DE ++F+  Q        G  E ++RPGIVHR
Sbjct: 175  VNGILHHCSLPTVAL-PNRDSEEDDISDDEFNSFAAGQN------CGTCETNIRPGIVHR 227

Query: 711  LDKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNR 890
            LDKGTSGLLVVAKDEHSH+HL+EQFK H+I RVY+SLT GVP+PLSGR+++P+GRDP NR
Sbjct: 228  LDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNR 287

Query: 891  IRMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLL 1070
            IRM A PG +  G+ARHA SRYKVIEILA GG ALV+WRLETGRTHQIRAHAKYLGIPLL
Sbjct: 288  IRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLL 347

Query: 1071 GDDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQ 1250
            GD+VYGGTKNM LSLL+ R P S+HG + QLV++L+RPCLHA++LGF HP TG+N+ FS 
Sbjct: 348  GDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSC 407

Query: 1251 IPPTDFGEILDQLRDIGTK 1307
             PP DF EIL  LR I T+
Sbjct: 408  QPPEDFAEILSWLRKISTE 426


>emb|CDP07347.1| unnamed protein product [Coffea canephora]
          Length = 442

 Score =  543 bits (1399), Expect = 0.0
 Identities = 283/437 (64%), Positives = 335/437 (76%), Gaps = 4/437 (0%)
 Frame = +3

Query: 18   LSPQSLSWHSVKPLSISLRN--PSLQKLISTARAYSTSISAANFDSDDFQNPVSGRPN-N 188
            LS  ++SW S+ P + +L+N  P    +IS +R    ++ A    +     P+S R   N
Sbjct: 4    LSLNTISWTSL-PSTKALKNIIPKPLSVISLSRL--VNVKACTTSAGGNPQPISDRRTIN 60

Query: 189  FSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRD 368
            FSG K++ETV++ S KLRLDSW+SSRI+GISRARVQSSIRSGLVSVNG IINKVSH+VR 
Sbjct: 61   FSGVKLQETVDVKSEKLRLDSWVSSRIHGISRARVQSSIRSGLVSVNGRIINKVSHMVRG 120

Query: 369  GDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILN 548
            GD VNC I+ELQ LRAEPEDIPLDIVYED+H+LVVNKPAHMVVHPAPGN +GTLVNGIL+
Sbjct: 121  GDKVNCTISELQQLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNTSGTLVNGILH 180

Query: 549  HCRLSTVFLSPEALP-ETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGT 725
            HC L  + L+ E +  E +D S DE  AF              SEAS+RPGIVHRLDKGT
Sbjct: 181  HCSLPMLSLASEEVHLEPEDASDDEFIAFPRAPKDNGGASSRTSEASIRPGIVHRLDKGT 240

Query: 726  SGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIA 905
            SGLLVVAKDEHSHSHLAEQFK  TIKRVYVSLTCGVPSP+SGR+D+P+GRD  NRIRM  
Sbjct: 241  SGLLVVAKDEHSHSHLAEQFKNRTIKRVYVSLTCGVPSPVSGRVDIPVGRDSNNRIRMAV 300

Query: 906  NPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVY 1085
              GS    K R+A SRY V+E+LAGGG ALV+W+LETGRTHQIR HAKY+G+PL+GD++Y
Sbjct: 301  FDGSTHSQKTRNAASRYSVVEVLAGGGSALVEWKLETGRTHQIRVHAKYMGVPLMGDELY 360

Query: 1086 GGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTD 1265
            GGTK M LSLLQ R P S+  ++ QL+ KLERPCLHALSLGF HP+T EN+ FSQ+PP D
Sbjct: 361  GGTKGMALSLLQPRTPSSFRENLQQLICKLERPCLHALSLGFTHPYTLENMHFSQMPPAD 420

Query: 1266 FGEILDQLRDIGTKTVT 1316
            F EIL QLRDI  + V+
Sbjct: 421  FAEILTQLRDIRAEKVS 437


>ref|XP_015887376.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Ziziphus
            jujuba]
          Length = 442

 Score =  541 bits (1393), Expect = 0.0
 Identities = 274/409 (66%), Positives = 327/409 (79%), Gaps = 1/409 (0%)
 Frame = +3

Query: 81   SLQKLISTARAYSTSISAANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLRLDSWLS 260
            S  ++    RA STS   +  D +D    ++G  NN+SG ++EETV +DSRKLRLDSW+S
Sbjct: 39   STSRISRILRATSTSTGVSISDGND--EALAGHRNNYSGVRLEETVAVDSRKLRLDSWIS 96

Query: 261  SRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEPEDIPLD 440
            SR++GISRARVQSSIRSGLVSVNG I++KVSH V+ GD VNC I+ELQPLRAEPE+IPLD
Sbjct: 97   SRVSGISRARVQSSIRSGLVSVNGRIVDKVSHNVKAGDRVNCTISELQPLRAEPENIPLD 156

Query: 441  IVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPETDDDSGD 617
            IVYED+HVLVVNKPAHMVVHPAPGNATGTLVNGIL+HC L TV F + + L +++D+  D
Sbjct: 157  IVYEDDHVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTVAFSNHDGLSDSEDNCDD 216

Query: 618  EASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHT 797
                FSVDQ  +        +ASVRPGIVHRLDKGTSGLLVVAK+E SH+HL++QFK HT
Sbjct: 217  GLGYFSVDQSSST------CQASVRPGIVHRLDKGTSGLLVVAKNELSHAHLSDQFKLHT 270

Query: 798  IKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYKVIEILA 977
            I RVY+SLT GVPSPL+GR+D+PIGRD  NRIRM A PG     + RHA SRYKVIE+LA
Sbjct: 271  IHRVYISLTSGVPSPLAGRVDIPIGRDSNNRIRMTAIPGPIKSKQGRHAASRYKVIEVLA 330

Query: 978  GGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPSYHGHIL 1157
            GGG ALV+WRLETGRTHQIRAHAK+LGIPLLGD++YGGTK+M LSLL  R P S HG + 
Sbjct: 331  GGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSMALSLLWPRTPSSCHGQLS 390

Query: 1158 QLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIGT 1304
            QLV++ ERPCLHA++L F+HPHTG+N+ FS  PP+DF EIL+QLR   T
Sbjct: 391  QLVSEFERPCLHAMALRFKHPHTGKNIHFSCPPPSDFAEILNQLRKFST 439


>ref|XP_010320444.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Solanum lycopersicum]
          Length = 430

 Score =  540 bits (1390), Expect = 0.0
 Identities = 276/419 (65%), Positives = 331/419 (78%), Gaps = 6/419 (1%)
 Frame = +3

Query: 78   PSLQKLISTARAYSTSISA-----ANFDSDDFQNPVSGRPNNFSGFKIEETVELDSRKLR 242
            P   K IS +R  S    A      + DSDD  + + GR +N+SG K+EETV+  + KLR
Sbjct: 13   PQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLR 72

Query: 243  LDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDGDVVNCKIAELQPLRAEP 422
            LDSW+SSRI+G+SRARVQSSIRSGLVSVNG + +KVSH+V+ GD V+C IA+L+PLRAEP
Sbjct: 73   LDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEP 132

Query: 423  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNHCRLSTV-FLSPEALPET 599
            EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLV+GIL+HC L TV F   E L + 
Sbjct: 133  EDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLSDG 192

Query: 600  DDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAE 779
            +D S DE + FS ++    D      E+SVRPGIVHRLDKGTSGLLVVAK+EHS + LAE
Sbjct: 193  EDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAE 252

Query: 780  QFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANPGSATCGKARHAVSRYK 959
            QFKKHTIKRVYVS+TCGVP+ ++GR+D+PIGRD  NRIRM A PG+   GK+RHAVSRYK
Sbjct: 253  QFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYK 312

Query: 960  VIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKNMGLSLLQSRNPPS 1139
            VIE LAGGG ALV+WRLETGRTHQ      +LGIPL+GD+VYGGTKNM LSLLQ + PP 
Sbjct: 313  VIEKLAGGGSALVEWRLETGRTHQ------HLGIPLMGDEVYGGTKNMALSLLQPKTPPM 366

Query: 1140 YHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFGEILDQLRDIGTKTVT 1316
            +HG + QLV++++RPCLHAL+LGFRHP TGEN+ F+++PP DF EIL +LR I T+ VT
Sbjct: 367  FHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEKVT 425


>ref|XP_008445320.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Cucumis melo]
          Length = 429

 Score =  533 bits (1374), Expect = 0.0
 Identities = 275/435 (63%), Positives = 331/435 (76%), Gaps = 1/435 (0%)
 Frame = +3

Query: 15   MLSPQSLSWHSVKPLSISLRNPSLQKLI-STARAYSTSISAANFDSDDFQNPVSGRPNNF 191
            M+S  S       P SI    P  ++ I S    +S + S+   D D++    S R  N+
Sbjct: 1    MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 192  SGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDG 371
            +G ++EETV+++  K+RLDSW+SSRINGISRARVQSSIR+GLVSVNG +I+KVSH V+ G
Sbjct: 61   AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 372  DVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNH 551
            DV+NC I+ELQPLRAEPEDI LDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVN ILNH
Sbjct: 121  DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 552  CRLSTVFLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSG 731
            C L  V  S        D S DE S+        +++    SEA +RPGIVHRLDKGTSG
Sbjct: 181  CSLPMVSTSTGEHQSDSDVSDDEFSS--------IEVFSRVSEAPIRPGIVHRLDKGTSG 232

Query: 732  LLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANP 911
            LLVVAKDEHSH+HL+ QFK+H+I+RVY+SLTCGVP   +GRI++PI RDP NRIRM A  
Sbjct: 233  LLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATH 292

Query: 912  GSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGG 1091
            G+     A+HA SRY V+EILA GG +LV+WRLETGRTHQIRAHAKY+GIPLLGD+VYGG
Sbjct: 293  GTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGG 352

Query: 1092 TKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFG 1271
            TK+M +SLL++R   + HG ++QLV+ LERPCLHAL+LGF HPHTG+N+RFS  PPTDF 
Sbjct: 353  TKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFA 412

Query: 1272 EILDQLRDIGTKTVT 1316
            EIL QLR+IGTK VT
Sbjct: 413  EILSQLREIGTKKVT 427


>ref|XP_008445318.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Cucumis melo] gi|659089083|ref|XP_008445319.1|
            PREDICTED: RNA pseudouridine synthase 2, chloroplastic
            isoform X1 [Cucumis melo]
          Length = 431

 Score =  530 bits (1366), Expect = 0.0
 Identities = 273/432 (63%), Positives = 329/432 (76%), Gaps = 1/432 (0%)
 Frame = +3

Query: 15   MLSPQSLSWHSVKPLSISLRNPSLQKLI-STARAYSTSISAANFDSDDFQNPVSGRPNNF 191
            M+S  S       P SI    P  ++ I S    +S + S+   D D++    S R  N+
Sbjct: 1    MISVCSARTIQASPSSIHFFFPRNRRRIDSNVLRFSANFSSRCSDYDEYSEAQSERIANY 60

Query: 192  SGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSHVVRDG 371
            +G ++EETV+++  K+RLDSW+SSRINGISRARVQSSIR+GLVSVNG +I+KVSH V+ G
Sbjct: 61   AGTRLEETVDINPGKVRLDSWISSRINGISRARVQSSIRAGLVSVNGRVIDKVSHNVKAG 120

Query: 372  DVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNGILNH 551
            DV+NC I+ELQPLRAEPEDI LDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVN ILNH
Sbjct: 121  DVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVNAILNH 180

Query: 552  CRLSTVFLSPEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRLDKGTSG 731
            C L  V  S        D S DE S+        +++    SEA +RPGIVHRLDKGTSG
Sbjct: 181  CSLPMVSTSTGEHQSDSDVSDDEFSS--------IEVFSRVSEAPIRPGIVHRLDKGTSG 232

Query: 732  LLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRIRMIANP 911
            LLVVAKDEHSH+HL+ QFK+H+I+RVY+SLTCGVP   +GRI++PI RDP NRIRM A  
Sbjct: 233  LLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEIPICRDPNNRIRMTATH 292

Query: 912  GSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLGDDVYGG 1091
            G+     A+HA SRY V+EILA GG +LV+WRLETGRTHQIRAHAKY+GIPLLGD+VYGG
Sbjct: 293  GTKNNPHAKHAASRYNVMEILAQGGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGG 352

Query: 1092 TKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQIPPTDFG 1271
            TK+M +SLL++R   + HG ++QLV+ LERPCLHAL+LGF HPHTG+N+RFS  PPTDF 
Sbjct: 353  TKSMAMSLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFA 412

Query: 1272 EILDQLRDIGTK 1307
            EIL QLR+IGTK
Sbjct: 413  EILSQLREIGTK 424


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Citrus sinensis]
          Length = 421

 Score =  529 bits (1362), Expect = 0.0
 Identities = 283/441 (64%), Positives = 335/441 (75%), Gaps = 5/441 (1%)
 Frame = +3

Query: 9    LKMLSPQSLSWHSV---KPLSIS-LRNPSLQKLISTARAYSTSISAANFDSDDFQNPVSG 176
            + MLS  S SW S    K L  S  + P     I  AR  S+S    N      + P++ 
Sbjct: 1    MTMLSLNSASWGSASCTKGLQFSPTKIPFGVFKILRARCSSSSSGGNN------REPIA- 53

Query: 177  RPNNFSGFKIEETVELDSRKLRLDSWLSSRINGISRARVQSSIRSGLVSVNGHIINKVSH 356
               N++G ++EETV+  + KLRLD+W+SSRI+GISRARVQSSIRSGLVS+NG +++KVSH
Sbjct: 54   ---NYAGVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSH 110

Query: 357  VVRDGDVVNCKIAELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVN 536
             V+ GD+VNC I+ELQPLRAE EDIPLDIVYED++VLVVNKPAHMVVHPAPGNATGTLVN
Sbjct: 111  NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 170

Query: 537  GILNHCRLSTVFLS-PEALPETDDDSGDEASAFSVDQGHTVDIGFGFSEASVRPGIVHRL 713
            GIL+HC L T+  S  EA  + +D S DE  + S+            S AS+RPGIVHRL
Sbjct: 171  GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSI------------SGASIRPGIVHRL 218

Query: 714  DKGTSGLLVVAKDEHSHSHLAEQFKKHTIKRVYVSLTCGVPSPLSGRIDVPIGRDPGNRI 893
            DKGTSGLLVVAKDEHSH+HL+EQFK HTI+RVY+SLT GVPS  SGRI+VPI RDP NRI
Sbjct: 219  DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 278

Query: 894  RMIANPGSATCGKARHAVSRYKVIEILAGGGCALVKWRLETGRTHQIRAHAKYLGIPLLG 1073
            RM A PGS   G+ARHA SRYKVIEILAGGG ALV+WRLETGRTHQIRAHAKY+GIPLLG
Sbjct: 279  RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLG 338

Query: 1074 DDVYGGTKNMGLSLLQSRNPPSYHGHILQLVAKLERPCLHALSLGFRHPHTGENLRFSQI 1253
            D+VYGGTKNM  SLLQ R  P  HG +L+LV+ L+RPCLHA++LGF HPHT E ++FS  
Sbjct: 339  DEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCP 398

Query: 1254 PPTDFGEILDQLRDIGTKTVT 1316
            PP DF EIL QLR+IGT+ ++
Sbjct: 399  PPADFAEILSQLREIGTEKLS 419