BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00012551
         (4595 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1571   0.0  
ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1548   0.0  
gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythra...  1548   0.0  
ref|XP_011069584.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1452   0.0  
ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic...  1434   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1425   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1421   0.0  
ref|XP_015081184.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1421   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1418   0.0  
ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, c...  1417   0.0  
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]      1411   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1368   0.0  
ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1347   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...  1347   0.0  
ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prun...  1347   0.0  
ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1344   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1341   0.0  
ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1337   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...  1337   0.0  
ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1337   0.0  

>ref|XP_011069583.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1
            [Sesamum indicum]
          Length = 952

 Score = 1571 bits (4067), Expect = 0.0
 Identities = 780/871 (89%), Positives = 812/871 (93%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            R FIQDPPWISSL+MKSLLFR +NRS VKIEF+E ERRKYYLLRRRQIKAETEAW     
Sbjct: 76   RGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRRRQIKAETEAWENMVE 135

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAPNLP+VKKL+LGWFEPLREAIEKEQN QRSKK KAAFAP++DALP
Sbjct: 136  EYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRSKKQKAAFAPFIDALP 195

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
            ADKMAVIVMHKIM LLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIH+FLE+TKK+QR E 
Sbjct: 196  ADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHNFLEKTKKYQRKET 255

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
             AE++EDS KEAAILRKRVKSLI+RNRVIEVQKLVR+EE KSW RDTQAKLGCCLI+LLT
Sbjct: 256  VAETEEDSKKEAAILRKRVKSLIRRNRVIEVQKLVRNEESKSWSRDTQAKLGCCLIELLT 315

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            QSAYVQPPVNQSADSPPDVRPAFRH FKIA RESGQ++VKKYGVIECDPLVL GLDKTVK
Sbjct: 316  QSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVIECDPLVLTGLDKTVK 375

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HMIIPYVPMLVPPKKW+GYDKGGYLFLPSYLMRTHGSR+QQ AVK VP KQMQKVYEALD
Sbjct: 376  HMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAVKTVPPKQMQKVYEALD 435

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDXXXXXXXXXXXXXXX 1264
            TLGNTKWRVNKRILSVVE IWAAGGN+AGLVNREDVPIPELLSDD               
Sbjct: 436  TLGNTKWRVNKRILSVVECIWAAGGNIAGLVNREDVPIPELLSDDAKEVKKWKWSVRKVK 495

Query: 1265 XINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGIL 1444
             INQERHSQRCDTELKL+VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGIL
Sbjct: 496  KINQERHSQRCDTELKLNVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGIL 555

Query: 1445 EFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRW 1624
            EFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGR+SFVEN IAEIFDSADNSLNGNRW
Sbjct: 556  EFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRLSFVENNIAEIFDSADNSLNGNRW 615

Query: 1625 WLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAV 1804
            WLKAEDPFQCLAACINL+EAL+SSSPHTV+SHLPIHQDGSCNGLQHYAALGRDSFEAAAV
Sbjct: 616  WLKAEDPFQCLAACINLAEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAV 675

Query: 1805 NLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTSV 1984
            NLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLI QVDRKLVKQTVMTSV
Sbjct: 676  NLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLISQVDRKLVKQTVMTSV 735

Query: 1985 YGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDC 2164
            YGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDC
Sbjct: 736  YGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDC 795

Query: 2165 AKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPP 2344
            AKIIASENQPV WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPP
Sbjct: 796  AKIIASENQPVCWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPP 855

Query: 2345 NFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILE 2524
            NFVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTHACDVDRMNQILR+KFVDLY+MPILE
Sbjct: 856  NFVHSLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDRMNQILREKFVDLYSMPILE 915

Query: 2525 SLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            +LLESF+TSYP LTFP LPNRGDFDL KV++
Sbjct: 916  NLLESFQTSYPMLTFPPLPNRGDFDLEKVIE 946


>ref|XP_012837864.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic [Erythranthe
            guttata]
          Length = 953

 Score = 1548 bits (4009), Expect = 0.0
 Identities = 763/873 (87%), Positives = 810/873 (92%), Gaps = 1/873 (0%)
 Frame = +2

Query: 2    DRVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXX 181
            DRVFIQDPPWISSLFMK+LLFR RNR GVKIEF+EMERRKYYLLRRRQ+KAETEAW    
Sbjct: 75   DRVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKV 134

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VKKL+LGWFEPLREAIEKEQN QRSKKNKAAFAP++DAL
Sbjct: 135  EEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDAL 194

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGLLMMGGKEDRCVRVVEAAVQIGVA+E+EVRIHSFLE+ KK+++ E
Sbjct: 195  PADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKKNEKRE 254

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
            +G ESQ DS  EA I+RKRVKSLIKRNRVIEV KLVRSEEFKSWGRD QAKLGCCLI+LL
Sbjct: 255  IGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGRDIQAKLGCCLIELL 314

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATR  GQ++VK+YGVIECDPLVLAGLDKTV
Sbjct: 315  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTV 374

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            KHMIIPYVPMLVPPKKW+GYD+GGYLFLPSYLMRTHGSR QQDAVK V +KQMQKVYEAL
Sbjct: 375  KHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEAL 434

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDXXXXXXXXXXXXX 1258
            DTLGNTKWRVNKRIL+VVE+IWAAGGN+AGLVNRED+PIPELL S+D             
Sbjct: 435  DTLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRK 494

Query: 1259 XXXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 1438
               INQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 495  VKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 554

Query: 1439 ILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGN 1618
            +LEFAEGRPLGKSGLRWLKIH+ANLYGGGVEKLSYD R++FVEN I+EIFDSADNSLNGN
Sbjct: 555  VLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGN 614

Query: 1619 RWWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAA 1798
            RWWLKAEDPFQCLAACINL EAL+S SPHTV+SHLPIHQDGSCNGLQHYAALGRDSFEAA
Sbjct: 615  RWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAA 674

Query: 1799 AVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMT 1978
            AVNL+AGDKP+DVYSEIAERVHNIMKRDSEKDP TD  AL+AK+LIGQVDRKLVKQTVMT
Sbjct: 675  AVNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDRKLVKQTVMT 734

Query: 1979 SVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLG 2158
            SVYGVTYVGAREQIKRRLEEKGLITDD+LLFSAACYAAKVTLAALGELFQAARAIM WLG
Sbjct: 735  SVYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQAARAIMAWLG 794

Query: 2159 DCAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAF 2338
            DCAKIIASEN+PVRWTTPLGLPVVQPYFK+QRHVIRTSLQVLALQREGDSVEVRKQRTAF
Sbjct: 795  DCAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSVEVRKQRTAF 854

Query: 2339 PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPI 2518
            PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLY+MPI
Sbjct: 855  PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYSMPI 914

Query: 2519 LESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            LE+LLESFETSYPTL FP LPNRGDF L +V++
Sbjct: 915  LENLLESFETSYPTLKFPPLPNRGDFLLEQVIE 947


>gb|EYU37150.1| hypothetical protein MIMGU_mgv1a000925mg [Erythranthe guttata]
          Length = 941

 Score = 1548 bits (4009), Expect = 0.0
 Identities = 763/873 (87%), Positives = 810/873 (92%), Gaps = 1/873 (0%)
 Frame = +2

Query: 2    DRVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXX 181
            DRVFIQDPPWISSLFMK+LLFR RNR GVKIEF+EMERRKYYLLRRRQ+KAETEAW    
Sbjct: 63   DRVFIQDPPWISSLFMKNLLFRSRNRGGVKIEFQEMERRKYYLLRRRQVKAETEAWENKV 122

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VKKL+LGWFEPLREAIEKEQN QRSKKNKAAFAP++DAL
Sbjct: 123  EEYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNTQRSKKNKAAFAPFIDAL 182

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGLLMMGGKEDRCVRVVEAAVQIGVA+E+EVRIHSFLE+ KK+++ E
Sbjct: 183  PADKMAVIVMHKMMGLLMMGGKEDRCVRVVEAAVQIGVAVENEVRIHSFLEKMKKNEKRE 242

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
            +G ESQ DS  EA I+RKRVKSLIKRNRVIEV KLVRSEEFKSWGRD QAKLGCCLI+LL
Sbjct: 243  IGDESQVDSSNEAVIMRKRVKSLIKRNRVIEVHKLVRSEEFKSWGRDIQAKLGCCLIELL 302

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATR  GQ++VK+YGVIECDPLVLAGLDKTV
Sbjct: 303  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRLPGQTIVKRYGVIECDPLVLAGLDKTV 362

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            KHMIIPYVPMLVPPKKW+GYD+GGYLFLPSYLMRTHGSR QQDAVK V +KQMQKVYEAL
Sbjct: 363  KHMIIPYVPMLVPPKKWKGYDRGGYLFLPSYLMRTHGSRHQQDAVKTVTSKQMQKVYEAL 422

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDXXXXXXXXXXXXX 1258
            DTLGNTKWRVNKRIL+VVE+IWAAGGN+AGLVNRED+PIPELL S+D             
Sbjct: 423  DTLGNTKWRVNKRILTVVENIWAAGGNIAGLVNREDIPIPELLLSEDMKEAKKWKWSVRK 482

Query: 1259 XXXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 1438
               INQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 483  VKKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 542

Query: 1439 ILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGN 1618
            +LEFAEGRPLGKSGLRWLKIH+ANLYGGGVEKLSYD R++FVEN I+EIFDSADNSLNGN
Sbjct: 543  VLEFAEGRPLGKSGLRWLKIHVANLYGGGVEKLSYDDRVAFVENNISEIFDSADNSLNGN 602

Query: 1619 RWWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAA 1798
            RWWLKAEDPFQCLAACINL EAL+S SPHTV+SHLPIHQDGSCNGLQHYAALGRDSFEAA
Sbjct: 603  RWWLKAEDPFQCLAACINLVEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAA 662

Query: 1799 AVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMT 1978
            AVNL+AGDKP+DVYSEIAERVHNIMKRDSEKDP TD  AL+AK+LIGQVDRKLVKQTVMT
Sbjct: 663  AVNLVAGDKPSDVYSEIAERVHNIMKRDSEKDPETDRHALIAKVLIGQVDRKLVKQTVMT 722

Query: 1979 SVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLG 2158
            SVYGVTYVGAREQIKRRLEEKGLITDD+LLFSAACYAAKVTLAALGELFQAARAIM WLG
Sbjct: 723  SVYGVTYVGAREQIKRRLEEKGLITDDKLLFSAACYAAKVTLAALGELFQAARAIMAWLG 782

Query: 2159 DCAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAF 2338
            DCAKIIASEN+PVRWTTPLGLPVVQPYFK+QRHVIRTSLQVLALQREGDSVEVRKQRTAF
Sbjct: 783  DCAKIIASENEPVRWTTPLGLPVVQPYFKSQRHVIRTSLQVLALQREGDSVEVRKQRTAF 842

Query: 2339 PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPI 2518
            PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLY+MPI
Sbjct: 843  PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYSMPI 902

Query: 2519 LESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            LE+LLESFETSYPTL FP LPNRGDF L +V++
Sbjct: 903  LENLLESFETSYPTLKFPPLPNRGDFLLEQVIE 935


>ref|XP_011069584.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X2
            [Sesamum indicum]
          Length = 884

 Score = 1452 bits (3760), Expect = 0.0
 Identities = 725/808 (89%), Positives = 752/808 (93%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            R FIQDPPWISSL+MKSLLFR +NRS VKIEF+E ERRKYYLLRRRQIKAETEAW     
Sbjct: 76   RGFIQDPPWISSLYMKSLLFRSKNRSEVKIEFQETERRKYYLLRRRQIKAETEAWENMVE 135

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAPNLP+VKKL+LGWFEPLREAIEKEQN QRSKK KAAFAP++DALP
Sbjct: 136  EYRELEREMCEKKLAPNLPYVKKLILGWFEPLREAIEKEQNSQRSKKQKAAFAPFIDALP 195

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
            ADKMAVIVMHKIM LLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIH+FLE+TKK+QR E 
Sbjct: 196  ADKMAVIVMHKIMSLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHNFLEKTKKYQRKET 255

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
             AE++EDS KEAAILRKRVKSLI+RNRVIEVQKLVR+EE KSW RDTQAKLGCCLI+LLT
Sbjct: 256  VAETEEDSKKEAAILRKRVKSLIRRNRVIEVQKLVRNEESKSWSRDTQAKLGCCLIELLT 315

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            QSAYVQPPVNQSADSPPDVRPAFRH FKIA RESGQ++VKKYGVIECDPLVL GLDKTVK
Sbjct: 316  QSAYVQPPVNQSADSPPDVRPAFRHFFKIAPRESGQNVVKKYGVIECDPLVLTGLDKTVK 375

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HMIIPYVPMLVPPKKW+GYDKGGYLFLPSYLMRTHGSR+QQ AVK VP KQMQKVYEALD
Sbjct: 376  HMIIPYVPMLVPPKKWKGYDKGGYLFLPSYLMRTHGSRKQQKAVKTVPPKQMQKVYEALD 435

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDXXXXXXXXXXXXXXX 1264
            TLGNTKWRVNKRILSVVE IWAAGGN+AGLVNREDVPIPELLSDD               
Sbjct: 436  TLGNTKWRVNKRILSVVECIWAAGGNIAGLVNREDVPIPELLSDDAKEVKKWKWSVRKVK 495

Query: 1265 XINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGIL 1444
             INQERHSQRCDTELKL+VARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGIL
Sbjct: 496  KINQERHSQRCDTELKLNVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGIL 555

Query: 1445 EFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRW 1624
            EFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGR+SFVEN IAEIFDSADNSLNGNRW
Sbjct: 556  EFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRLSFVENNIAEIFDSADNSLNGNRW 615

Query: 1625 WLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAV 1804
            WLKAEDPFQCLAACINL+EAL+SSSPHTV+SHLPIHQDGSCNGLQHYAALGRDSFEAAAV
Sbjct: 616  WLKAEDPFQCLAACINLAEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAV 675

Query: 1805 NLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTSV 1984
            NLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLI QVDRKLVKQTVMTSV
Sbjct: 676  NLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLISQVDRKLVKQTVMTSV 735

Query: 1985 YGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDC 2164
            YGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDC
Sbjct: 736  YGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDC 795

Query: 2165 AKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPP 2344
            AKIIASENQPV WTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPP
Sbjct: 796  AKIIASENQPVCWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPP 855

Query: 2345 NFVHSLDGSHMMMTAIACRDAGLRFAGV 2428
            NFVHSLDGSHMMMTA+ACRDAGLRFAG+
Sbjct: 856  NFVHSLDGSHMMMTAVACRDAGLRFAGL 883


>ref|NP_001289533.1| DNA-directed RNA polymerase 3, chloroplastic [Nicotiana sylvestris]
            gi|59800202|sp|P69242.1|RPOT3_NICSY RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic;
            AltName: Full=NsRpoT-C; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3;
            Flags: Precursor gi|59800203|sp|P69243.1|RPO3A_TOBAC
            RecName: Full=DNA-directed RNA polymerase 3A,
            chloroplastic; AltName: Full=NictaRpoT3-syl; AltName:
            Full=T7 bacteriophage-type single subunit RNA polymerase
            3A; Flags: Precursor [Nicotiana tabacum]
            gi|21425641|emb|CAC82576.3| phage-type RNA polymerase
            [Nicotiana sylvestris] gi|21425679|emb|CAC95027.2|
            plastid RNA polymerase [Nicotiana tabacum]
            gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
            gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 977

 Score = 1434 bits (3713), Expect = 0.0
 Identities = 699/872 (80%), Positives = 787/872 (90%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXX 181
            RVFIQDPPW+SSLFM SL  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW    
Sbjct: 100  RVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMV 159

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VKKL+LGWFEPLR+AIEKEQN + + K++AAFAP++D+L
Sbjct: 160  EEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSL 219

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+FLE+TKK Q+  
Sbjct: 220  PADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHM 279

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
             GA+SQED  +E  ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LL
Sbjct: 280  TGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELL 339

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            T++AYVQPPV+QSAD+PPD+RPAFRH+F+IATR+ G+S+VKKYGVIECDPLV+AG+D+TV
Sbjct: 340  TETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTV 399

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            K M+IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV++VPTKQMQ+VYEAL
Sbjct: 400  KQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEAL 459

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDXXXXXXXXXXXXXX 1261
            DTLG+TKWRVNKRILSVVESIWA GGN+AGLV+R+DVPIPEL SDD              
Sbjct: 460  DTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKS 519

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQE HSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI
Sbjct: 520  KKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 579

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGLRWLKIHLA+LY GG+EKL YD R++FVEN+I +I DSA+N LNGNR
Sbjct: 580  LEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNR 639

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDPFQCLAACINLSEAL+SSSPHTV SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 640  WWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAA 699

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+AGDKPADVY+EIA RV +I++ DS KDPATDP+ALLAKLLI QVDRKLVKQTVMTS
Sbjct: 700  VNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTS 759

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGD
Sbjct: 760  VYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGD 819

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFP
Sbjct: 820  CAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFP 879

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVD+MN+ILR+KFV+LY+MPIL
Sbjct: 880  PNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPIL 939

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E LLESF+ SYP LTFP LP RGDFDL +V++
Sbjct: 940  EDLLESFQNSYPALTFPPLPKRGDFDLVEVLE 971


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum
            tuberosum]
          Length = 1015

 Score = 1425 bits (3690), Expect = 0.0
 Identities = 690/872 (79%), Positives = 782/872 (89%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXX 181
            RVFIQDPPW+SSLFM SL  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW    
Sbjct: 138  RVFIQDPPWVSSLFMNSLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMV 197

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VKKL+LGWFEPLR+AIEKEQN + ++K++ A+AP++D+L
Sbjct: 198  EEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAEMTQKHRTAYAPHIDSL 257

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+F+E+TKKHQ+  
Sbjct: 258  PADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHM 317

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
             GA+ QED  +E  ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LL
Sbjct: 318  SGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELL 377

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            T++AYVQPPV+QSAD+PPD+RPAFRH+F+IATR+ G+++VKKYGVIECDPLV+ G+D+TV
Sbjct: 378  TETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTV 437

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            K M+IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV++VP KQMQ+VYEAL
Sbjct: 438  KQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEAL 497

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDXXXXXXXXXXXXXX 1261
            DTLG+TKWRVNKRILSVVESIWA GGN+AGLV+R+DVPIPEL SDD              
Sbjct: 498  DTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKA 557

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQE HSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI
Sbjct: 558  KKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 617

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGLRWLK+HLA+LY GG+EKL YD RI+FVEN+I +I DSA N LNGNR
Sbjct: 618  LEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNR 677

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDP QCLAACINLSEAL+S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 678  WWLNAEDPLQCLAACINLSEALKSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAA 737

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+AG+KPADVY+EIA RV +I++ DS KDPATDP+ALLAKLLI QVDRKLVKQTVMTS
Sbjct: 738  VNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTS 797

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGD
Sbjct: 798  VYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGD 857

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFP
Sbjct: 858  CAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFP 917

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFV+LY+MPIL
Sbjct: 918  PNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPIL 977

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E LLESF+ SYP LTFP LP RGDFDL +V++
Sbjct: 978  EDLLESFQESYPALTFPPLPKRGDFDLQEVLE 1009


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum
            lycopersicum]
          Length = 1007

 Score = 1421 bits (3679), Expect = 0.0
 Identities = 686/872 (78%), Positives = 782/872 (89%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXX 181
            RVFIQDPPW+SSLFM +L  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW    
Sbjct: 130  RVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIERRRRYAMLRRRQIKAETEAWEQMV 189

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VKKLMLGWFEPLR+AIE+EQN + ++K++ A+AP++D+L
Sbjct: 190  EEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSL 249

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+F+E+TKKHQ+  
Sbjct: 250  PADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHM 309

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
             GA+ QED  +E  ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LL
Sbjct: 310  TGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELL 369

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            T++AYVQPPV+QSAD+PPD+RPAFRH+F+IATR+ G+++VKKYGVIECDPLV+ G+D+TV
Sbjct: 370  TETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTV 429

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            K M+IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV++VP KQMQ+VYEAL
Sbjct: 430  KQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEAL 489

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDXXXXXXXXXXXXXX 1261
            DTLG+TKWRVNKRILSVVE+IWA GGN+AGLV+R+DVPIPEL SDD              
Sbjct: 490  DTLGSTKWRVNKRILSVVETIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKA 549

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQE HSQRCDTELKLSVARK++DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI
Sbjct: 550  KKINQELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 609

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGLRWLK+HLA+LY GG+EKL YD RI+FVEN+I +I DSA N LNGNR
Sbjct: 610  LEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNR 669

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDP QCLAACINLSEA++S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 670  WWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAA 729

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+AG+KPADVY+EIA RV +I++ DS KDPATDP+ALLAKLLI QVDRKLVKQTVMTS
Sbjct: 730  VNLVAGEKPADVYTEIALRVDHIIRGDSTKDPATDPNALLAKLLIDQVDRKLVKQTVMTS 789

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGD
Sbjct: 790  VYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGD 849

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFP
Sbjct: 850  CAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFP 909

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFV+LY+MPIL
Sbjct: 910  PNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPIL 969

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E LLESF+ SYP LTFP LP RGDFDL +V++
Sbjct: 970  EDLLESFQESYPALTFPPLPKRGDFDLREVLE 1001


>ref|XP_015081184.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum
            pennellii]
          Length = 1036

 Score = 1421 bits (3678), Expect = 0.0
 Identities = 686/872 (78%), Positives = 781/872 (89%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEM-ERRKYYLLRRRQIKAETEAWXXXX 181
            RVFIQDPPW+SSLFM +L  R +   GV+ EF+E+  RR+Y +LRRRQIKAETEAW    
Sbjct: 159  RVFIQDPPWVSSLFMNNLFVRAKQVKGVRREFREIARRRRYAMLRRRQIKAETEAWEQMV 218

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VKKLMLGWFEPLR+AIE+EQN + ++K++ A+AP++D+L
Sbjct: 219  EEYRELEREMCEKKLAPNLPYVKKLMLGWFEPLRQAIEREQNAEMTQKHRTAYAPHIDSL 278

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+F+E+TKKHQ+  
Sbjct: 279  PADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFMEKTKKHQKHM 338

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
             GA+ QED  +E  ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LL
Sbjct: 339  TGAQGQEDMSRETMILRKRVKSLIKRNRVVEVRKLMQSEEPESWGRDTQAKLGCRLLELL 398

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            T++AYVQPPV+QSAD+PPD+RPAFRH+F+IATR+ G+++VKKYGVIECDPLV+ G+D+TV
Sbjct: 399  TETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKNIVKKYGVIECDPLVVVGVDRTV 458

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            K M+IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV++VP KQMQ+VYEAL
Sbjct: 459  KQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPAKQMQQVYEAL 518

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDXXXXXXXXXXXXXX 1261
            DTLG+TKWRVNKRILSVVESIWA GGN+AGLV+R+DVPIPEL SDD              
Sbjct: 519  DTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMELKRWKWRVRKA 578

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQE HSQRCDTELKLSVARK++DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI
Sbjct: 579  KKINQELHSQRCDTELKLSVARKLRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 638

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGLRWLK+HLA+LY GG+EKL YD RI+FVEN+I +I DSA N LNGNR
Sbjct: 639  LEFAEGRPLGKSGLRWLKVHLASLYAGGIEKLCYDARIAFVENHIDDILDSAHNPLNGNR 698

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDP QCLAACINLSEA++S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 699  WWLNAEDPLQCLAACINLSEAVKSLSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAA 758

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+AG+KPADVY+EIA RV +I++ DS KDPATDP+ALLAKLLI QVDRKLVKQTVMTS
Sbjct: 759  VNLVAGEKPADVYTEIALRVDHIIRGDSNKDPATDPNALLAKLLIDQVDRKLVKQTVMTS 818

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLGD
Sbjct: 819  VYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGD 878

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGD+VEVRKQRTAFP
Sbjct: 879  CAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDAVEVRKQRTAFP 938

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFV+LY+MPIL
Sbjct: 939  PNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDQMNRILREKFVELYSMPIL 998

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E LLESF+ SYP LTFP LP RGDFDL +V++
Sbjct: 999  EDLLESFQESYPALTFPPLPKRGDFDLREVLE 1030


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            [Nicotiana tabacum] gi|21425667|emb|CAC95021.2|
            chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 977

 Score = 1418 bits (3671), Expect = 0.0
 Identities = 692/873 (79%), Positives = 784/873 (89%), Gaps = 2/873 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXX 181
            RVFIQDPPW+SSLFM SL  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW    
Sbjct: 99   RVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMV 158

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VKKL+LGWFEPLR+AIEKEQN + + K++AAFAP++D+L
Sbjct: 159  EEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSL 218

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+FLE+TKK Q+  
Sbjct: 219  PADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHM 278

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
             GA+SQED  KE  ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LL
Sbjct: 279  TGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELL 338

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            T++AYVQ PV+QSAD+PPD+RPAFRH+FKIATR+ G+++VKKYGVIECDPLV+AG+D+TV
Sbjct: 339  TETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTV 398

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            K M+IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV+ VPTKQMQ+VYEAL
Sbjct: 399  KQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEAL 458

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDXXXXXXXXXXXXX 1258
            DTLG+TKWRVNKRIL+VVESIWA GGN+AGLV+R+DVPIPEL  SDD             
Sbjct: 459  DTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRK 518

Query: 1259 XXXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 1438
               INQE HSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 519  SKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 578

Query: 1439 ILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGN 1618
            ILEFAEGRPLGKSGLRWLKIHLA+LY GGVEKL YD R++FVEN+I +I DSA+N LNGN
Sbjct: 579  ILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGN 638

Query: 1619 RWWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAA 1798
            RWWL AEDPFQCLAACINLSEAL+SSSPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAA
Sbjct: 639  RWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAA 698

Query: 1799 AVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMT 1978
            AVNL+AG+KPADVY+EIA RV +I++ DS KDPA DP+ALLAKLLI QVDRKLVKQTVMT
Sbjct: 699  AVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMT 758

Query: 1979 SVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLG 2158
            SVYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLG
Sbjct: 759  SVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLG 818

Query: 2159 DCAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAF 2338
            DCAK+IA ENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQ+LALQREGD+VEVRKQRTAF
Sbjct: 819  DCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAF 878

Query: 2339 PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPI 2518
            PPNFVHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVD+MN+ILR+KFV+LY++PI
Sbjct: 879  PPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPI 938

Query: 2519 LESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            LE LLE+F+ SYP LTFP LP RGDF+L +V++
Sbjct: 939  LEDLLENFQKSYPALTFPPLPKRGDFNLREVLE 971


>ref|XP_009608694.1| PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1
            [Nicotiana tomentosiformis]
          Length = 919

 Score = 1417 bits (3668), Expect = 0.0
 Identities = 691/873 (79%), Positives = 784/873 (89%), Gaps = 2/873 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYY-LLRRRQIKAETEAWXXXX 181
            RVFIQDPPW+SSLFM SL  R +   GV+ EF+E+ERR+ Y +LRRRQIKAETEAW    
Sbjct: 41   RVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMV 100

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VKKL+LGWFEPLR+AIEKEQN + + K++AAFAP++D+L
Sbjct: 101  EEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSL 160

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGLLMMGGKE+RCV+VV+AAVQIG+A+E+EVRIH+FLE+TKK Q+  
Sbjct: 161  PADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHM 220

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
             GA+SQED  +E  ILRKRVKSLIKRNRV+EV+KL++SEE +SWGRDTQAKLGC L++LL
Sbjct: 221  TGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELL 280

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            T++AYVQ PV+QSAD+PPD+RPAFRH+FKIATR+ G+++VKKYGVIECDPLV+AG+D+TV
Sbjct: 281  TETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTV 340

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            K M+IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSR+QQDAV+ VPTKQMQ+VYEAL
Sbjct: 341  KQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEAL 400

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDXXXXXXXXXXXXX 1258
            DTLG+TKWRVNKRIL+VVESIWA GGN+AGLV+R+DVPIPEL  SDD             
Sbjct: 401  DTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRK 460

Query: 1259 XXXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 1438
               INQE HSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 461  SKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 520

Query: 1439 ILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGN 1618
            ILEFAEGRPLGKSGLRWLKIHLA+LY GGVEKL YD R++FVEN+I +I DSA+N LNGN
Sbjct: 521  ILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGN 580

Query: 1619 RWWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAA 1798
            RWWL AEDPFQCLAACINLSEAL+SSSPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAA
Sbjct: 581  RWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAA 640

Query: 1799 AVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMT 1978
            AVNL+AG+KPADVY+EIA RV +I++ DS KDPA DP+ALLAKLLI QVDRKLVKQTVMT
Sbjct: 641  AVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMT 700

Query: 1979 SVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLG 2158
            SVYGVTYVGAREQIKRRLEEKGLI DDRLLF+A+CYAAKVTLAALGELFQAAR  M WLG
Sbjct: 701  SVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLG 760

Query: 2159 DCAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAF 2338
            DCAK+IA ENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQ+LALQREGD+VEVRKQRTAF
Sbjct: 761  DCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAF 820

Query: 2339 PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPI 2518
            PPNFVHSLDGSHMMMTA+ACRDAGL+FAGVHDSFWTHACDVD+MN+ILR+KFV+LY++PI
Sbjct: 821  PPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPI 880

Query: 2519 LESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            LE LLE+F+ SYP LTFP LP RGDF+L +V++
Sbjct: 881  LEDLLENFQKSYPALTFPPLPKRGDFNLREVLE 913


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score = 1411 bits (3653), Expect = 0.0
 Identities = 688/869 (79%), Positives = 765/869 (88%)
 Frame = +2

Query: 8    VFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXXX 187
            V IQDPPWISSL++KSLLFR RNR  VKIEFKEMER KYY LRRRQIKAETEAW      
Sbjct: 78   VIIQDPPWISSLYIKSLLFRNRNRCDVKIEFKEMERHKYYELRRRQIKAETEAWENMVKE 137

Query: 188  XXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALPA 367
                       K+APNLP+ KKLMLGWFEPL EAI  EQ++Q+ KKN+ AFAPY+D+LP 
Sbjct: 138  YKELEKEMCEKKMAPNLPYFKKLMLGWFEPLTEAIRTEQSLQKPKKNRIAFAPYIDSLPP 197

Query: 368  DKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEVG 547
            + MAVIVMHKIMGLLMMGGK+DRC+RVVEAA+QIG AIE EVRIH+FLE+TK HQ+  V 
Sbjct: 198  ESMAVIVMHKIMGLLMMGGKQDRCIRVVEAALQIGKAIEQEVRIHAFLEKTK-HQKEAVA 256

Query: 548  AESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLTQ 727
            +ESQE+S ++AA LRKRVK+L++R R +EVQKLV+SE  + W R+ QAKLGCCLI LLTQ
Sbjct: 257  SESQENSCEKAANLRKRVKNLVRRGRGVEVQKLVKSENHEPWTREIQAKLGCCLINLLTQ 316

Query: 728  SAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVKH 907
            SAYVQPPV+QSADSPPDVRPAFRH FKIATRE  Q++V++YGVIECDPL+L G +  VKH
Sbjct: 317  SAYVQPPVSQSADSPPDVRPAFRHFFKIATREPRQTVVRRYGVIECDPLILDGFESNVKH 376

Query: 908  MIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALDT 1087
            M++P++PML+PPKKW+GYDKGGYLFLPSY+MRTHGSR+QQDAVK V  ++MQKV+EALDT
Sbjct: 377  MMVPHIPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRRQQDAVKTVSPRKMQKVFEALDT 436

Query: 1088 LGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLSDDXXXXXXXXXXXXXXXX 1267
            LGNTKWRVNK ILSVVE IWAAGGN+AGLVNREDVP+PEL SDD                
Sbjct: 437  LGNTKWRVNKSILSVVEDIWAAGGNIAGLVNREDVPLPELHSDDPIEIKKWKFSIRKAKK 496

Query: 1268 INQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILE 1447
             N E HS RCDTELKLSVAR MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGILE
Sbjct: 497  NNMEMHSLRCDTELKLSVARAMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGILE 556

Query: 1448 FAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNRWW 1627
            F+EGRPLGKSGL WLK+HLANL+GGGV+KL YD R+SFVEN I E+FDSADN L+GNRWW
Sbjct: 557  FSEGRPLGKSGLYWLKLHLANLFGGGVQKLPYDERLSFVENNITEVFDSADNPLSGNRWW 616

Query: 1628 LKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAAVN 1807
            LKAEDPFQ LAACIN+SEALRSSSPHTV+SHLPIHQDGSCNGLQHYAALGRDSFEAAAVN
Sbjct: 617  LKAEDPFQFLAACINISEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVN 676

Query: 1808 LIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTSVY 1987
            L+AG KP DVYSEIAERV +IMK DSEKDPA DP+A+LAKLLIGQVDRKLVKQTVMTSVY
Sbjct: 677  LVAGHKPTDVYSEIAERVLDIMKSDSEKDPADDPNAVLAKLLIGQVDRKLVKQTVMTSVY 736

Query: 1988 GVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGDCA 2167
            GVTYVGAREQI++RL EKG I DD++LF AACYAAKVT+AALG+LFQAARAIM WLGDCA
Sbjct: 737  GVTYVGAREQIRKRLAEKGFINDDKVLFMAACYAAKVTMAALGQLFQAARAIMSWLGDCA 796

Query: 2168 KIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFPPN 2347
            KIIASENQPVRWTTPLGLPVVQPYFKT+RHVIRTSLQVLALQREGDSVEVRKQ+TAFPPN
Sbjct: 797  KIIASENQPVRWTTPLGLPVVQPYFKTKRHVIRTSLQVLALQREGDSVEVRKQKTAFPPN 856

Query: 2348 FVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPILES 2527
            FVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTHACDVD+MNQILR+KFVDLY+MPILE 
Sbjct: 857  FVHSLDGSHMMMTAVACRDAGLRFAGVHDSFWTHACDVDKMNQILREKFVDLYSMPILED 916

Query: 2528 LLESFETSYPTLTFPALPNRGDFDLNKVV 2614
            LLESF++SYPTL FP LP RGDFDL  V+
Sbjct: 917  LLESFQSSYPTLRFPPLPKRGDFDLRNVL 945


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1368 bits (3540), Expect = 0.0
 Identities = 668/873 (76%), Positives = 758/873 (86%), Gaps = 2/873 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRS-GVKIEFKEMERRKYYLLRRRQIKAETEAWXXXX 181
            R+F+QDPPWISS        R R     VK+EF+E ERR Y LLRRRQ+KAETEAW    
Sbjct: 103  RIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRRRQVKAETEAWERMV 162

Query: 182  XXXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDAL 361
                         KLAPNLP+VK L LGWFEPLREAI+KEQ  QR+KK KAA+AP+++ L
Sbjct: 163  EEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELL 222

Query: 362  PADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRME 541
            PADKMAVIVMHK+MGL+MMG  E+ CVRVV+AAVQIG+AIE EVRIHSFLE+TK  +R +
Sbjct: 223  PADKMAVIVMHKMMGLVMMG-HEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHK 281

Query: 542  VGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLL 721
                SQE  ++E  ILRKRVKS I++ ++IEVQKLV++EE   WGRDTQAKLG  LI+LL
Sbjct: 282  TVGHSQE-GLREKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELL 340

Query: 722  TQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTV 901
            T++AYVQ PVNQSAD PPDVRPAFRH FK  T+ESGQ   +KYGVIECDPLVL GLD+T 
Sbjct: 341  TETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTA 400

Query: 902  KHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEAL 1081
            KHM+IPYVPML+PPKKW+GYDKGGYLFLPSY+MRTHGSR+QQDAVK+VP +Q+QKV+EAL
Sbjct: 401  KHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEAL 460

Query: 1082 DTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLS-DDXXXXXXXXXXXXX 1258
            DTLGNTKWR+N+R+LSVVESIWA GGNL GLV+RE+VP+PE  S +D             
Sbjct: 461  DTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARK 520

Query: 1259 XXXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 1438
               INQERHS RCDTE+KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG
Sbjct: 521  AKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG 580

Query: 1439 ILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGN 1618
            +LEFAEGRPLGKSGLRWLKI LANLY GGVEKLSYDGR++FV+N++ ++FDSADN LNGN
Sbjct: 581  VLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGN 640

Query: 1619 RWWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAA 1798
            RWWL AEDPFQCLAACINLSEALRSSSPHTV+SHLPIHQDGSCNGLQHYAALGR+S EA+
Sbjct: 641  RWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEAS 700

Query: 1799 AVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMT 1978
            AVNL+AG+KPADVYSEIA RVH IMKRDS KDPATDP ALLAK+LIGQVDRKLVKQTVMT
Sbjct: 701  AVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMT 760

Query: 1979 SVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLG 2158
            SVYGVTY+GAREQIKRRL EKGLITD+RLLF+AACYAAKVTLAALGE+FQAAR IM WLG
Sbjct: 761  SVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLAALGEIFQAARDIMAWLG 820

Query: 2159 DCAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAF 2338
            +CAK+IASENQPV+WTTPLGLPV+QPY K++RH+IRTSLQVLALQREG  V +RKQRTAF
Sbjct: 821  ECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLALQREGSVVVIRKQRTAF 880

Query: 2339 PPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPI 2518
            PPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDVD+MNQILR+KFV+LY+MPI
Sbjct: 881  PPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPI 940

Query: 2519 LESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            LE+LLESF+TS+PTLTFP LP+RG+FDL +V++
Sbjct: 941  LENLLESFQTSHPTLTFPPLPDRGNFDLREVLE 973


>ref|XP_011018068.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Populus
            euphratica]
          Length = 983

 Score = 1347 bits (3487), Expect = 0.0
 Identities = 662/872 (75%), Positives = 751/872 (86%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            RVFIQDPPWIS+ F K + ++  N+  VK+EFK++E+RKY LLRRRQI+ ETEAW     
Sbjct: 109  RVFIQDPPWISAHFWKGV-YKIANKK-VKVEFKDIEKRKYNLLRRRQIREETEAWERMAD 166

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAPNLP+VK L+LGWFEPL+EAIEKEQ +++SKK K+AF+P ++ LP
Sbjct: 167  EYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLP 226

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
            ADKMAVIVMHK+MGLLM+G  ED CVRVV+AAVQIG+AIE EVRIH+FLE+TK HQR + 
Sbjct: 227  ADKMAVIVMHKMMGLLMVG-HEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNHQRKKT 285

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
              + QE   KE  +LRKRV SLI+R R++EVQ LV+ +E K W R TQAKLG  LI+LLT
Sbjct: 286  MHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLT 345

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            ++AYVQPPVNQS D PPDVRPAFRHIFK  T+  GQ +VKKYGVIECDPL+L GLD T K
Sbjct: 346  ETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAK 405

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HM+IPY PMLVPPKKW+GYDKGG+LFLPSY+MRTHGSRQQQ AV++VP KQMQKV+EALD
Sbjct: 406  HMLIPYFPMLVPPKKWKGYDKGGHLFLPSYIMRTHGSRQQQVAVRSVPGKQMQKVFEALD 465

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDXXXXXXXXXXXXXX 1261
            TLGNTKWRVN+R+L VVE IW +GGN+AGLV+RED+PIPE   SDD              
Sbjct: 466  TLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKA 525

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQERHSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+
Sbjct: 526  KKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGV 585

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEF EGRPLGKSGLRWLKIHLANLY GGVEKLS+DGR++FVEN+++EIFDSA N +NG R
Sbjct: 586  LEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKR 645

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWLKAEDPFQCLAACINLSEAL S+SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 646  WWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAA 705

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+A +KP+DVYSEIA RVH I++RDS KDPAT+P ALLAK+L+ QVDRKLVKQTVMTS
Sbjct: 706  VNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTS 765

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKG ITDDRLLFSAACY AKVTL ALGELFQAAR IM WLGD
Sbjct: 766  VYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGD 825

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAKIIASE+QPV+WTTPLGLPVVQPY+K +RH+I+TSLQ+LALQREG SV+VRKQRTAFP
Sbjct: 826  CAKIIASEDQPVQWTTPLGLPVVQPYYKRERHLIKTSLQILALQREGSSVQVRKQRTAFP 885

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHA DVD MN+ILR+KFV+LYNMPIL
Sbjct: 886  PNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHARDVDLMNRILREKFVELYNMPIL 945

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E+LLE F+TSYPTL FP LP RG+FDL KV++
Sbjct: 946  ENLLEDFQTSYPTLKFPPLPERGNFDLQKVLR 977


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score = 1347 bits (3487), Expect = 0.0
 Identities = 661/872 (75%), Positives = 752/872 (86%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            +VFIQDPPWIS+ F K + ++  N+  VK+EFK++E+RKY LLRRRQI+ ETEAW     
Sbjct: 8    KVFIQDPPWISAHFWKGM-YKLANKK-VKVEFKDIEKRKYNLLRRRQIREETEAWERMAD 65

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAPNLP+VK L+LGWFEPL+EAIEKEQ +++SKK K+AF+P ++ LP
Sbjct: 66   EYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLP 125

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
            ADKMAVIVMHK+MGLLM+G  ED CVRVV+AAVQIG+AIE EVRIH+FLE+TK +QR + 
Sbjct: 126  ADKMAVIVMHKMMGLLMVG-HEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKT 184

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
              E QE   KE  +LRKRV SLI+R R++EVQ LV+ +E K W R TQAKLG  LI+LLT
Sbjct: 185  MHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIELLT 244

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            ++AYVQPPVNQS D PPDVRPAFRHIFK  T+  GQ +VKKYGVIECDPL+L GLD T K
Sbjct: 245  ETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGTAK 304

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HM+IPY PMLVPPKKW+GYDKGG+LFLPSY+MRTHGSRQQQ AV++VP KQMQKV+EALD
Sbjct: 305  HMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEALD 364

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDXXXXXXXXXXXXXX 1261
            TLGNTKWRVN+R+L VVE IW +GGN+AGLV+RED+PIPE   SDD              
Sbjct: 365  TLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVRKA 424

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQERHSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+
Sbjct: 425  KKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGV 484

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEF EGRPLGKSGLRWLKIHLANLY GGVEKLS+DGR++FVEN+++EIFDSA N +NG R
Sbjct: 485  LEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNGKR 544

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWLKAEDPFQCLAACINLSEAL S+SPHTV+SHLPIHQDGSCNGLQHYAALGRD+ EAAA
Sbjct: 545  WWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAA 604

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+A +KP+DVYSEIA RVH I++RDS KDPAT+P ALLAK+L+ QVDRKLVKQTVMTS
Sbjct: 605  VNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVMTS 664

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKG ITDDRLLFSAACY AKVTL ALGELFQAAR IM WLGD
Sbjct: 665  VYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLTALGELFQAARDIMSWLGD 724

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAKIIASE+QPV+WTTPLGLPVVQPY+KT+RH+I+TSLQ+LALQREG SV+VRKQRTAFP
Sbjct: 725  CAKIIASEDQPVQWTTPLGLPVVQPYYKTERHLIKTSLQILALQREGSSVQVRKQRTAFP 784

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHA DVD MN+ILR+KFV+LYNMPIL
Sbjct: 785  PNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPIL 844

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E+LLE F+TSYPTL FP LP RG+FDL KV++
Sbjct: 845  ENLLEDFQTSYPTLQFPPLPERGNFDLQKVLR 876


>ref|XP_007203225.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
            gi|462398756|gb|EMJ04424.1| hypothetical protein
            PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score = 1347 bits (3487), Expect = 0.0
 Identities = 657/872 (75%), Positives = 746/872 (85%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            R+FIQDPPWI+SLF+K +  R      +K+E KE+ERR Y +LRRRQIKAETEAW     
Sbjct: 102  RIFIQDPPWIASLFLKGIYKRANQE--LKLESKEIERRNYNVLRRRQIKAETEAWERMVD 159

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAPNLP+VK L LGWFEPLREAI +EQ  Q++KK+KAAFAP++D LP
Sbjct: 160  EYKDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLP 219

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
            ADKMA+IVMHK+MGL+M+G  +D CV+VV+AAV IG+AIE EVRIHSFLE+TK  Q+ + 
Sbjct: 220  ADKMALIVMHKMMGLVMVGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKT 278

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
            G   ++   KE  ILRKRV  LI+R R+ EVQKL+  EE K WGRD QAKLG  LI+LLT
Sbjct: 279  GVADEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLT 338

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            ++AYVQPP++Q ADSPPDVRPAFRH FK   +  GQ +VK YGVIECDPLVL GLDKT K
Sbjct: 339  ETAYVQPPLSQLADSPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAK 398

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HM+IPYVPMLVPPK+W+GYDKGG+LFLPSY+MRTHGSR+Q DA++ +   QMQKV+EALD
Sbjct: 399  HMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALD 458

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDXXXXXXXXXXXXXX 1261
             LG+TKWRVNK++LSVVESIWA GGN+AGLVNREDVP+P+   S+D              
Sbjct: 459  MLGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKA 518

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+
Sbjct: 519  KKINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 578

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGLRWLKIHLANLY GGVEKLSY+GR++FV+N+I +IFDSA N +NGNR
Sbjct: 579  LEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNR 638

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 639  WWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAA 698

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+ GDKPADVYSEIA RVH IMKRDS KDP T P+ALLA++L+ Q+DRKLVKQTVMTS
Sbjct: 699  VNLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTS 758

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKGLITDDRLLF+AACYAAKVTLAALGE+FQAAR IM WLGD
Sbjct: 759  VYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGD 818

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASENQPVRWTTPLGLPVVQPY K++RH+IRTSLQVLALQRE +SV++RKQRTAFP
Sbjct: 819  CAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFP 878

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTH CDVD+MN+ILR+KFV+LY+MPIL
Sbjct: 879  PNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPIL 938

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            ESLLESF+ SYP LTFP LP RGDFDL +V++
Sbjct: 939  ESLLESFQASYPALTFPPLPERGDFDLLQVLE 970


>ref|XP_008243031.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Prunus mume]
          Length = 976

 Score = 1344 bits (3479), Expect = 0.0
 Identities = 656/872 (75%), Positives = 745/872 (85%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            R+FIQDPPWI+SLF+K +  R      +K+E KE+ERR Y LLRRRQIKAETEAW     
Sbjct: 102  RIFIQDPPWIASLFLKGIYKRANQE--LKLESKEIERRNYNLLRRRQIKAETEAWERMVD 159

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAPNLP+VK L LGWFEPLREAI +EQ  Q++KK+KAAFAP++D LP
Sbjct: 160  EYKDLEKVMREKKLAPNLPYVKALFLGWFEPLREAIAREQKTQQTKKHKAAFAPHIDLLP 219

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
            ADKMA+IVMHK+MGL+M+G  +D CV+VV+AAV IG+AIE EVRIHSFLE+TK  Q+ + 
Sbjct: 220  ADKMALIVMHKMMGLVMVGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNLQKKKT 278

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
            G   ++   KE  ILRKRV  LI+R R+ EVQKL+  EE K WGRD QAKLG  LI+LLT
Sbjct: 279  GVADEDGLSKEKEILRKRVNGLIRRKRLNEVQKLLIKEEMKPWGRDKQAKLGSRLIELLT 338

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            ++AYVQPP++Q A+SPPDVRPAFRH FK   +  GQ +VK YGVIECDPLVL GLDKT K
Sbjct: 339  ETAYVQPPLSQLAESPPDVRPAFRHRFKAVAKSPGQKIVKNYGVIECDPLVLTGLDKTAK 398

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HM+IPYVPMLVPPK+W+GYDKGG+LFLPSY+MRTHGSR+Q DA++ +   QMQKV+EALD
Sbjct: 399  HMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDAMRNISRNQMQKVFEALD 458

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDXXXXXXXXXXXXXX 1261
             LG+TKWRVNK++LSVVESIWA GGN+AGLVNREDVP+P+   S+D              
Sbjct: 459  MLGSTKWRVNKKVLSVVESIWARGGNIAGLVNREDVPVPDKSPSEDLKEIQEWKWSVRKA 518

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQERHS RCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+
Sbjct: 519  KKINQERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 578

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGLRWLKIHLANLY GGVEKLSY+GR++FV+N+I +IFDSA N +NGNR
Sbjct: 579  LEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEGRLAFVDNHIDDIFDSATNPVNGNR 638

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 639  WWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAA 698

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+ GDKPADVYSEIA RVH IMKRDS KDP T P+ALLA++L+ Q+DRKLVKQTVMTS
Sbjct: 699  VNLVDGDKPADVYSEIAARVHEIMKRDSNKDPTTSPNALLARILVNQIDRKLVKQTVMTS 758

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKGLITDDRLLF+AACYAAKVTLAALGE+FQAAR IM WLGD
Sbjct: 759  VYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGD 818

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASENQPVRWTTPLGLPVVQPY K++RH+IRTSLQVLALQRE +SV++RKQRTAFP
Sbjct: 819  CAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNSVDIRKQRTAFP 878

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTH CDVD+MN+ILR+KFV+LY+MPIL
Sbjct: 879  PNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPIL 938

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            ESLLESF+ SYP LTFP LP RGDFDL +V++
Sbjct: 939  ESLLESFQASYPALTFPPLPERGDFDLLQVLE 970


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria
            vesca subsp. vesca]
          Length = 973

 Score = 1341 bits (3470), Expect = 0.0
 Identities = 652/872 (74%), Positives = 752/872 (86%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            R+FIQDPPWI+SLF+K + F+  N+  +K+E KE++RRKY LLRRRQIKAETEAW     
Sbjct: 99   RIFIQDPPWIASLFLKGM-FKKVNKE-LKVESKEIDRRKYNLLRRRQIKAETEAWEKMVE 156

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAP+LP+VK L LGWFEPLREAI KEQ  Q++KK+K AFAP++D LP
Sbjct: 157  DYKDLERVMREKKLAPSLPYVKALFLGWFEPLREAIAKEQKAQQTKKHKQAFAPHIDLLP 216

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
            ADKMA+IVMHK+MGL+MMG  +D CV+VV+AAV IG+AIE EVRIHSFLE++K  QR + 
Sbjct: 217  ADKMALIVMHKLMGLVMMGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKSKSLQRKKT 275

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
                ++   KE  ILRKRV  LI+R R++EVQKL++ E+ K WGRDTQAKLG  LI+LLT
Sbjct: 276  SVADEDGLSKEKEILRKRVNGLIRRKRLVEVQKLLKKEDMKPWGRDTQAKLGSRLIELLT 335

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            ++A+VQPP++Q AD PPDVRPAFRH  K A +  GQ LVK YGVIECDPLVLAGLDKT K
Sbjct: 336  ETAHVQPPLDQLADGPPDVRPAFRHRLKAAAKSPGQKLVKNYGVIECDPLVLAGLDKTAK 395

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HM+IPYVPMLVPPK+W+GYDKGG+LFLPSY+MRTHGSR+Q D ++ +  +QMQKV+EALD
Sbjct: 396  HMLIPYVPMLVPPKRWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGRQMQKVFEALD 455

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELL-SDDXXXXXXXXXXXXXX 1261
             LG+TKWR+NK++L+VVESIWA GGN+AGLV+REDVP+PE   S+D              
Sbjct: 456  MLGSTKWRINKKVLNVVESIWARGGNIAGLVDREDVPVPEKPPSEDPTEIQEWRWSARKA 515

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              +NQERHSQRCDTELKLSVAR+MKDE+GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+
Sbjct: 516  KKLNQERHSQRCDTELKLSVARRMKDEDGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 575

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGLRWLKIHLANLY GGVEKLSYDGRISFV+N+I +IFDSA N +NGNR
Sbjct: 576  LEFAEGRPLGKSGLRWLKIHLANLYSGGVEKLSYDGRISFVDNHIDDIFDSATNPVNGNR 635

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRD+ EAAA
Sbjct: 636  WWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAA 695

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+AG+KPADVYSEIA RVH+IMKRDS KDP T+P+ALLAK+L+ Q+DRKLVKQTVMTS
Sbjct: 696  VNLVAGEKPADVYSEIAVRVHDIMKRDSNKDPTTNPNALLAKVLVNQIDRKLVKQTVMTS 755

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKGLITDDRLLF+AACYAAKVTLAALGE+FQAAR IM WLGD
Sbjct: 756  VYGVTYVGAREQIKRRLEEKGLITDDRLLFTAACYAAKVTLAALGEIFQAARGIMSWLGD 815

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASENQPVRWTTPLGLPVVQPY K++RH+IRTSLQVLALQRE + V+VRKQRTAFP
Sbjct: 816  CAKVIASENQPVRWTTPLGLPVVQPYCKSERHLIRTSLQVLALQRESNLVDVRKQRTAFP 875

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAG+RFAGVHDSFWTHACDVD+MNQILR+ FV+LY+ PIL
Sbjct: 876  PNFVHSLDGSHMMMTALACRDAGIRFAGVHDSFWTHACDVDQMNQILRENFVELYSKPIL 935

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E+LLESF+ +YP LTFP LP RGDFDL +V++
Sbjct: 936  ENLLESFQAAYPELTFPPLPERGDFDLQEVLK 967


>ref|XP_009366215.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Pyrus x
            bretschneideri]
          Length = 972

 Score = 1337 bits (3461), Expect = 0.0
 Identities = 652/872 (74%), Positives = 745/872 (85%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            R+FIQDPPWI++LF+K +  +      +K+E KE++RRKY LLRRRQIKAETEAW     
Sbjct: 98   RIFIQDPPWIAALFLKGMYKKANQE--LKLESKEIDRRKYNLLRRRQIKAETEAWERMVE 155

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAP+LP+VK L LGWFEPLREAI +EQ VQ++KK+KAAFAP++D LP
Sbjct: 156  EYKDLERVMREKKLAPSLPYVKTLFLGWFEPLREAIAREQQVQQTKKHKAAFAPHIDLLP 215

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
             DKMA+IVMHK+MGL+M+G  +D CV+VV+AAV IG+AIE EVRIHSFLE+TK  QR + 
Sbjct: 216  PDKMALIVMHKMMGLVMVGN-QDGCVQVVQAAVHIGMAIEQEVRIHSFLEKTKNFQRKKT 274

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
                ++  IKE  ILRKRV  LIKR R+ EVQKL+  EEFK WGRDTQAKLG  LI+LLT
Sbjct: 275  AVADEDSLIKEKEILRKRVNVLIKRKRLREVQKLLVKEEFKPWGRDTQAKLGSRLIELLT 334

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            ++AYVQPP+NQ AD PPDVRPAFRH FK A +  GQ LVK YGVIECDPLVL GLDKT K
Sbjct: 335  ETAYVQPPLNQLADGPPDVRPAFRHRFKAAAKTPGQKLVKNYGVIECDPLVLTGLDKTAK 394

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HM+IPYVPMLVPP+KW+GYDKGG+LFLPSY+MRTHGSR+Q D ++ +  KQMQKV+EALD
Sbjct: 395  HMLIPYVPMLVPPRKWKGYDKGGHLFLPSYVMRTHGSRKQVDTMRNISGKQMQKVFEALD 454

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLS-DDXXXXXXXXXXXXXX 1261
             LG+TKWRVNK++L+VVESIWA GGN+AGLV+REDVP+P+    +               
Sbjct: 455  MLGSTKWRVNKKVLNVVESIWARGGNIAGLVDREDVPVPDKPPLEGLTEIQEWKWSVRKA 514

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQERHS RCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+
Sbjct: 515  KKINQERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGV 574

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGLRWLKIHLANLY GGVEKLSY+ R +FV+++I +IFDSA N +NGNR
Sbjct: 575  LEFAEGRPLGKSGLRWLKIHLANLYAGGVEKLSYEERHAFVDHHIDDIFDSATNPVNGNR 634

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDP QCLAACINLSEAL S SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 635  WWLTAEDPLQCLAACINLSEALNSPSPHTVISHLPIHQDGSCNGLQHYAALGRDSLEAAA 694

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+AG+KPADVYSEIA RVH IM+RDS KDP T P+ALLA++L+ Q+DRKLVKQTVMTS
Sbjct: 695  VNLVAGEKPADVYSEIAARVHEIMERDSNKDPTTSPNALLARVLVNQIDRKLVKQTVMTS 754

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKG ITDDRLLF+AACYAAKVTLAALGE+FQAAR IMGWLGD
Sbjct: 755  VYGVTYVGAREQIKRRLEEKGFITDDRLLFTAACYAAKVTLAALGEIFQAARGIMGWLGD 814

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASENQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQRE +S++VRKQRTAFP
Sbjct: 815  CAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQRESNSIDVRKQRTAFP 874

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDAGLRFAGVHDSFWTHACDVD+MN+ILR+KF++LY+MPIL
Sbjct: 875  PNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHACDVDQMNEILREKFIELYSMPIL 934

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E+LLESF+ SYP LTFP LP RGDFDL +V++
Sbjct: 935  ENLLESFQASYPALTFPPLPERGDFDLQEVLE 966


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score = 1337 bits (3461), Expect = 0.0
 Identities = 659/872 (75%), Positives = 746/872 (85%), Gaps = 1/872 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            RVFI+D PWIS+L+ K        +  VK+E K++E+RKY LLRRRQI+ ETEAW     
Sbjct: 108  RVFIRDSPWISALYWKGTHKIANKK--VKLELKDIEKRKYNLLRRRQIREETEAWERMAE 165

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNKAAFAPYVDALP 364
                        KLAPNLP+VK L LGWFEPL+EAIE+EQ +++SKK K+AF+P ++ LP
Sbjct: 166  EYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLP 225

Query: 365  ADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRMEV 544
            ADKMAVIVMHK+MGL+M+G  ED CVRVV+AAVQIG+AIE EVRIH+FLE+TK HQR + 
Sbjct: 226  ADKMAVIVMHKMMGLVMVG-HEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKT 284

Query: 545  GAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQLLT 724
              + QE   KE  +LRKRV SLI+R R++EVQ LV  +E K W RD QAKLG  LI+LLT
Sbjct: 285  MHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWNRDKQAKLGSRLIELLT 344

Query: 725  QSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKTVK 904
            ++AYVQPPV+QS   PPDVRPAFRHIFK  T+  GQ  VKKYGVIECDPL+L GLD T K
Sbjct: 345  ETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAK 404

Query: 905  HMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEALD 1084
            HM+IPY PMLVPPKKWRGYDKGG+LFLPSY+MRTHGSRQQQDAV++VP KQMQKV+EALD
Sbjct: 405  HMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALD 464

Query: 1085 TLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPELLS-DDXXXXXXXXXXXXXX 1261
            TLGNTKWRVN ++L VVE IWA+GGN AGLVNR D+PIPE LS DD              
Sbjct: 465  TLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKA 524

Query: 1262 XXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGI 1441
              INQERHSQRCDTELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+
Sbjct: 525  KKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGV 584

Query: 1442 LEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNGNR 1621
            LEFAEGRPLGKSGL WLKIHLANLY GGVEKLS+DGR++FVEN+++EIFDSA+N +NG R
Sbjct: 585  LEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKR 644

Query: 1622 WWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEAAA 1801
            WWL AEDPFQCLAACINLSEAL+S+SPHTV+SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 645  WWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAA 704

Query: 1802 VNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVMTS 1981
            VNL+A +KP+DVYSEIA RVH I++RDS KDPAT+P ALLAK+LI +VDRKLVKQTVMTS
Sbjct: 705  VNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTS 764

Query: 1982 VYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWLGD 2161
            VYGVTYVGAREQIKRRLEEKG ITDDR+LFSAACYAAKVTL ALGELFQAAR IMGWLGD
Sbjct: 765  VYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGWLGD 824

Query: 2162 CAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTAFP 2341
            CAK+IASE+QPVRWTTPLGLPVVQPY+KTQRH+IRTSLQVLALQREG SV+VRKQRTAFP
Sbjct: 825  CAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFP 884

Query: 2342 PNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMPIL 2521
            PNFVHSLDGSHMMMTA+ACRDA LRFAGVHDSFWTHA D D MN+ILR+KFV+LYNMPIL
Sbjct: 885  PNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPIL 944

Query: 2522 ESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            E+LLE F+TSYPTL FP+LP RG+FDL +V++
Sbjct: 945  ENLLEDFQTSYPTLKFPSLPERGNFDLQEVLR 976


>ref|XP_012445978.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Gossypium
            raimondii] gi|763786877|gb|KJB53873.1| hypothetical
            protein B456_009G009300 [Gossypium raimondii]
          Length = 972

 Score = 1337 bits (3460), Expect = 0.0
 Identities = 657/874 (75%), Positives = 761/874 (87%), Gaps = 3/874 (0%)
 Frame = +2

Query: 5    RVFIQDPPWISSLFMKSLLFRGRNRSGVKIEFKEMERRKYYLLRRRQIKAETEAWXXXXX 184
            R+FIQDPPWIS+LF K L ++  N++ VKIE KE+E+RKY LLRRRQ+K ETEAW     
Sbjct: 97   RIFIQDPPWISALFWKGL-YKMTNQT-VKIEHKEIEKRKYNLLRRRQVKEETEAWEKMVE 154

Query: 185  XXXXXXXXXXXXKLAPNLPHVKKLMLGWFEPLREAIEKEQNVQRSKKNK--AAFAPYVDA 358
                        KLAPNLP+VK L LGWFEPLREAI KEQ VQ+ K  K  AA+AP+++ 
Sbjct: 155  EYRELEREMCEKKLAPNLPYVKGLFLGWFEPLREAIAKEQKVQKGKNKKLRAAYAPHIEL 214

Query: 359  LPADKMAVIVMHKIMGLLMMGGKEDRCVRVVEAAVQIGVAIEHEVRIHSFLERTKKHQRM 538
            LPADK+AVIVMHK+MGL+M G +ED  V+VV+AAV IGVAIE EVRIHSFLE+TK +QR 
Sbjct: 215  LPADKLAVIVMHKMMGLVM-GAEEDGYVQVVQAAVHIGVAIEQEVRIHSFLEKTKNYQRK 273

Query: 539  EVGAESQEDSIKEAAILRKRVKSLIKRNRVIEVQKLVRSEEFKSWGRDTQAKLGCCLIQL 718
            ++  E Q  S KE  ILRKRV SLI+R R+ EVQKLV++EE K WGRD QAKLG  L++L
Sbjct: 274  QIVDEVQGAS-KEKEILRKRVNSLIRRRRLTEVQKLVKNEEIKPWGRDAQAKLGSRLLEL 332

Query: 719  LTQSAYVQPPVNQSADSPPDVRPAFRHIFKIATRESGQSLVKKYGVIECDPLVLAGLDKT 898
            LT++AYVQPP++QS DSP DVRPAFRH FK  +R  GQ + K+YGVIECDPL+ +GLDK+
Sbjct: 333  LTETAYVQPPIDQSGDSPLDVRPAFRHKFKTISRGPGQKIKKRYGVIECDPLIRSGLDKS 392

Query: 899  VKHMIIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRQQQDAVKAVPTKQMQKVYEA 1078
             KHM+IPYVPMLVPPKKW+GYDKGGYLFLPSY+MRTHGSR+QQ+A+K V  K M+KV+EA
Sbjct: 393  AKHMMIPYVPMLVPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQEALKGVNVKNMRKVFEA 452

Query: 1079 LDTLGNTKWRVNKRILSVVESIWAAGGNLAGLVNREDVPIPEL-LSDDXXXXXXXXXXXX 1255
            LDTLG+TKWRVN ++L+VVESIWA+GGN+AGLV+R D+PIPE   S+D            
Sbjct: 453  LDTLGSTKWRVNNKVLAVVESIWASGGNIAGLVDRNDIPIPEKPYSEDSTEIQEWKWSVR 512

Query: 1256 XXXXINQERHSQRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 1435
                +N+ERHSQRCDTELKLSVARKM++EEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR
Sbjct: 513  KANKVNRERHSQRCDTELKLSVARKMENEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCR 572

Query: 1436 GILEFAEGRPLGKSGLRWLKIHLANLYGGGVEKLSYDGRISFVENYIAEIFDSADNSLNG 1615
            G+LEFAEGRPLG+SGL WLKIHLANLY GGVEKLS+DGR++FV+N++ EIFDSA+N +NG
Sbjct: 573  GVLEFAEGRPLGRSGLHWLKIHLANLYSGGVEKLSHDGRLAFVDNHLDEIFDSAENPING 632

Query: 1616 NRWWLKAEDPFQCLAACINLSEALRSSSPHTVVSHLPIHQDGSCNGLQHYAALGRDSFEA 1795
            NRWWL AEDPFQCLAAC+NLSEAL+S+SPH+++S+LPIHQDGSCNGLQHYAALGRD+ EA
Sbjct: 633  NRWWLTAEDPFQCLAACMNLSEALKSTSPHSMISYLPIHQDGSCNGLQHYAALGRDNLEA 692

Query: 1796 AAVNLIAGDKPADVYSEIAERVHNIMKRDSEKDPATDPSALLAKLLIGQVDRKLVKQTVM 1975
            AAVNL+AG+KPADVYSEIA RVHNIMKRDS KDPAT+P+ALLAKLLI QVDRKLVKQTVM
Sbjct: 693  AAVNLVAGEKPADVYSEIAVRVHNIMKRDSNKDPATNPNALLAKLLIDQVDRKLVKQTVM 752

Query: 1976 TSVYGVTYVGAREQIKRRLEEKGLITDDRLLFSAACYAAKVTLAALGELFQAARAIMGWL 2155
            TSVYGVT+VGAREQIKRRLEEKG ITDDRLLFSAACY AKVTLAALGELFQAAR IMGWL
Sbjct: 753  TSVYGVTFVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVTLAALGELFQAARNIMGWL 812

Query: 2156 GDCAKIIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDSVEVRKQRTA 2335
            GDCAK+IASENQPVRWTTPLGLPVVQPY+K++RH+IRT+LQVLALQREG+SVEVRKQRTA
Sbjct: 813  GDCAKVIASENQPVRWTTPLGLPVVQPYYKSERHLIRTTLQVLALQREGNSVEVRKQRTA 872

Query: 2336 FPPNFVHSLDGSHMMMTAIACRDAGLRFAGVHDSFWTHACDVDRMNQILRQKFVDLYNMP 2515
            FPPNFVHSLDGSHMMMTA+ACRDAGL FAGVHDSFWTHACDV++MNQILR+KFV+LY+MP
Sbjct: 873  FPPNFVHSLDGSHMMMTAVACRDAGLYFAGVHDSFWTHACDVEKMNQILREKFVELYSMP 932

Query: 2516 ILESLLESFETSYPTLTFPALPNRGDFDLNKVVQ 2617
            +LE+LLESFETSYPTL FP LP RG+FDL +V++
Sbjct: 933  VLENLLESFETSYPTLVFPPLPERGNFDLREVLK 966