BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00012242
         (3332 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polyme...  1819   0.0  
ref|XP_012847562.1| PREDICTED: probable RNA-dependent RNA polyme...  1739   0.0  
gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]  1618   0.0  
gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]  1590   0.0  
emb|CDP05596.1| unnamed protein product [Coffea canephora]           1539   0.0  
ref|XP_009623376.1| PREDICTED: probable RNA-dependent RNA polyme...  1497   0.0  
ref|XP_009781107.1| PREDICTED: probable RNA-dependent RNA polyme...  1496   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1494   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1489   0.0  
emb|CDP05599.1| unnamed protein product [Coffea canephora]           1489   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1489   0.0  
ref|XP_015076567.1| PREDICTED: probable RNA-dependent RNA polyme...  1486   0.0  
ref|XP_015895367.1| PREDICTED: RNA-dependent RNA polymerase 1 [Z...  1483   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1471   0.0  
ref|XP_006366109.1| PREDICTED: probable RNA-dependent RNA polyme...  1469   0.0  
ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1467   0.0  
ref|XP_015160223.1| PREDICTED: probable RNA-dependent RNA polyme...  1466   0.0  
ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1466   0.0  
ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polyme...  1462   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1461   0.0  

>ref|XP_011075687.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Sesamum indicum]
            gi|747058682|ref|XP_011075688.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Sesamum indicum]
            gi|747058684|ref|XP_011075689.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Sesamum indicum]
          Length = 1115

 Score = 1819 bits (4711), Expect = 0.0
 Identities = 873/1033 (84%), Positives = 950/1033 (91%)
 Frame = -1

Query: 3332 SPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNS 3153
            S  DI+ NPRT+VHEMEQVTLNFGCQTSREKFSVLWK  SVSVKFGTGMKKMHF+LCHNS
Sbjct: 81   SDSDIVHNPRTYVHEMEQVTLNFGCQTSREKFSVLWKVASVSVKFGTGMKKMHFLLCHNS 140

Query: 3152 VEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIR 2973
            VEY+LQLSYENIWQIVLY+PHGQTAKLLLIQLFGAPRIYKK+++S++SYF ET DDQWIR
Sbjct: 141  VEYKLQLSYENIWQIVLYHPHGQTAKLLLIQLFGAPRIYKKVSESIYSYFSETQDDQWIR 200

Query: 2972 TTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANLALVPIV 2793
            TTDFTPSCIGQ+SGLCL+LPYGMRLPNFQD FV+Y +S++PF LE G PF+ NL LVPI+
Sbjct: 201  TTDFTPSCIGQASGLCLELPYGMRLPNFQDHFVYYSKSENPFHLERGAPFSHNLDLVPIL 260

Query: 2792 HPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKE 2613
            HPPRG ELPYRILFKVC LVQTGCLPGPKLD  FF+LV+P+R + +Y+EHALEKLYY+KE
Sbjct: 261  HPPRGFELPYRILFKVCSLVQTGCLPGPKLDARFFQLVNPQRINTKYVEHALEKLYYLKE 320

Query: 2612 CCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRV 2433
            CCYDP  WL EQYEKYRT +EQP SP ISL DGLVYVHRVQ+TPT+VYFSGPEVNVSNRV
Sbjct: 321  CCYDPTTWLMEQYEKYRTAKEQPTSPVISLGDGLVYVHRVQVTPTKVYFSGPEVNVSNRV 380

Query: 2432 LRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGN 2253
            LRHY D++DNFLRVSFVDEEWDKMYSTDLSP+VA+ DEN +TKLYERIL TL+EGI IGN
Sbjct: 381  LRHYSDYIDNFLRVSFVDEEWDKMYSTDLSPRVASADENGKTKLYERILKTLREGIRIGN 440

Query: 2252 KKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSST 2073
            K F+FLAFSSSQLRDNSLWMFAPTN L+A  IR+WMGDFR IRNVAKYAARLGQSF SST
Sbjct: 441  KNFEFLAFSSSQLRDNSLWMFAPTNNLNAHYIRQWMGDFRSIRNVAKYAARLGQSFGSST 500

Query: 2072 ETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRY 1893
            ETLSVG+ E+E+I DIEAVR GTKY+FSDGIGKISA+FARRVA++CG K++TPSAFQIRY
Sbjct: 501  ETLSVGQHEIERIPDIEAVRGGTKYIFSDGIGKISAEFARRVAVRCGVKNSTPSAFQIRY 560

Query: 1892 GGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVK 1713
            GGYKGVVAVDP SSVKLSLR SMLKYQSENTKLDVL+WSKYQPCFLNRQIITLLSTLGVK
Sbjct: 561  GGYKGVVAVDPTSSVKLSLRSSMLKYQSENTKLDVLAWSKYQPCFLNRQIITLLSTLGVK 620

Query: 1712 DYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMM 1533
            D+ F+ KQREAVAQLDDILVDPLRAQEALDLM+PGEN+NILKEMLKCGYKPDGEPFLSMM
Sbjct: 621  DHAFERKQREAVAQLDDILVDPLRAQEALDLMAPGENTNILKEMLKCGYKPDGEPFLSMM 680

Query: 1532 LQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMN 1353
            LQTFR+SKLLDLR+KARIFVPQ RQMMGCLDETG LEYG+VFVQFSGA R  F EES M 
Sbjct: 681  LQTFRASKLLDLRLKARIFVPQGRQMMGCLDETGTLEYGEVFVQFSGALRRQFNEESIM- 739

Query: 1352 YDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNE 1173
            +++  ++ NY+V+G VVVAKNPCLHPGDVRVLKA+DV ALHHMVDCVVFP +GMRPHPNE
Sbjct: 740  FNDYMSEYNYIVKGKVVVAKNPCLHPGDVRVLKAVDVEALHHMVDCVVFPKKGMRPHPNE 799

Query: 1172 CSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSL 993
            CSGSDLDGDIYFVCWD DLIPPRQVSPMDY PAPT+ LDHDVTIEEVEEYFTNYIVNDSL
Sbjct: 800  CSGSDLDGDIYFVCWDPDLIPPRQVSPMDYDPAPTTGLDHDVTIEEVEEYFTNYIVNDSL 859

Query: 992  GIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDK 813
            GII+NAHTVFADKE +MALSE CLELARLFSIAVDFPKTGVPAEIP HLRVKEYPDFMDK
Sbjct: 860  GIISNAHTVFADKEESMALSESCLELARLFSIAVDFPKTGVPAEIPSHLRVKEYPDFMDK 919

Query: 812  PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEY 633
            PDK +YES R+IGKL+REVKDIAPHTTS +SFTKEVARRSYDPDMEVDGF DY+DEAF+Y
Sbjct: 920  PDKTAYESKRVIGKLYREVKDIAPHTTSSKSFTKEVARRSYDPDMEVDGFKDYIDEAFDY 979

Query: 632  KTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFK 453
            KTEYD KLGNLMEYYGIKTEAEILSGGIMK SKTFDRRKD EAI  AVRSLRNE RSWFK
Sbjct: 980  KTEYDYKLGNLMEYYGIKTEAEILSGGIMKTSKTFDRRKDAEAIGVAVRSLRNEARSWFK 1039

Query: 452  KGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRRAS 273
            KG+ESDDPYAKASAWYHVTYHPDFWGSYN GLKRDHYISFPWCVYDKLIKIK+DNSRRA 
Sbjct: 1040 KGSESDDPYAKASAWYHVTYHPDFWGSYNEGLKRDHYISFPWCVYDKLIKIKEDNSRRAP 1099

Query: 272  DMASLEREFSRRL 234
             ++SLE +   RL
Sbjct: 1100 GISSLEWQLGNRL 1112


>ref|XP_012847562.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Erythranthe
            guttata] gi|848895047|ref|XP_012847563.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 [Erythranthe
            guttata] gi|604316686|gb|EYU28878.1| hypothetical protein
            MIMGU_mgv1a000505mg [Erythranthe guttata]
          Length = 1110

 Score = 1739 bits (4504), Expect = 0.0
 Identities = 836/1036 (80%), Positives = 936/1036 (90%), Gaps = 1/1036 (0%)
 Frame = -1

Query: 3332 SPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNS 3153
            S IDI+QNPRTF HEME VTLNFGCQ S  KFSVLWK ESV+VKFGTGMKKMHF L HNS
Sbjct: 81   SDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWKGESVTVKFGTGMKKMHFFLRHNS 140

Query: 3152 VEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIR 2973
            VEY++QLSYENIWQIVLYN +GQ++KLL+IQLFGAPRIYKKL+ SV+SYF  T DDQW+R
Sbjct: 141  VEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLFGAPRIYKKLSGSVYSYFMVTQDDQWVR 200

Query: 2972 TTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANLALVPIV 2793
            TTDFT S IGQSS LCLQLPYGMRLPNF+D+F++YKES+ PFRLETGVPF+ N  LVPIV
Sbjct: 201  TTDFTQSLIGQSSSLCLQLPYGMRLPNFRDNFLYYKESETPFRLETGVPFSHNSDLVPIV 260

Query: 2792 HPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKE 2613
             PP  ++LPY +LFKVC LVQTGCLPGPKLD +FF LV+P + DIRYIEHALEKLYY+KE
Sbjct: 261  RPPIDIKLPYTLLFKVCSLVQTGCLPGPKLDRSFFDLVNPAKHDIRYIEHALEKLYYLKE 320

Query: 2612 CCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRV 2433
            CCY+P AWL EQYE+YRT +E P SPAI LDDGLVYVHRVQ+TPTRVYFSGPEVNVSNRV
Sbjct: 321  CCYNPAAWLKEQYERYRTSKEHPKSPAICLDDGLVYVHRVQVTPTRVYFSGPEVNVSNRV 380

Query: 2432 LRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGN 2253
            LRHYRD++DNFLRVSFVDEEWDKMYSTDLSP+VAAGDENKRTKLYER++S L++G+ IG+
Sbjct: 381  LRHYRDYIDNFLRVSFVDEEWDKMYSTDLSPRVAAGDENKRTKLYERVISILRDGVRIGD 440

Query: 2252 KKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSST 2073
            +KFDFLAFSSSQLRDNSLWMFAPT+GL+AD IR WMGDF  IRNVAKYAARLGQSF SST
Sbjct: 441  RKFDFLAFSSSQLRDNSLWMFAPTDGLNADGIREWMGDFSSIRNVAKYAARLGQSFGSST 500

Query: 2072 ETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRY 1893
            ETLSV +RE+E+I D   V+NGT+Y FSDGIGKIS DFAR+VA KCG +S+TPSAFQIRY
Sbjct: 501  ETLSVSKREIEEIQD---VKNGTEYTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRY 557

Query: 1892 GGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVK 1713
            GGYKGVVAVDP S  KLSLRPSMLKYQS+NTKLDVL+WSKYQPCFLNRQIITLLSTLGVK
Sbjct: 558  GGYKGVVAVDPSSKKKLSLRPSMLKYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVK 617

Query: 1712 DYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMM 1533
            D+VF+ +QREAVAQLDD+L+DP+RAQEALDLMSPGEN++ILKEMLKCGY+PDGEPFLSMM
Sbjct: 618  DHVFEKRQREAVAQLDDVLIDPMRAQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMM 677

Query: 1532 LQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMN 1353
            LQTFR+SKLLDLRVKAR+F+P+ARQMMGCLDETGIL+YGQVFV++SGA + G +++S   
Sbjct: 678  LQTFRASKLLDLRVKARVFIPKARQMMGCLDETGILKYGQVFVRYSGAVKRGLFDDS--- 734

Query: 1352 YDNVSTDCNY-VVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPN 1176
            YDN + +  +  V G VVVAKNPCLHPGDVRVL A+DV  L HMVDCVVFP  G RPHPN
Sbjct: 735  YDNSTANERFDPVRGKVVVAKNPCLHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPN 794

Query: 1175 ECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDS 996
            ECSGSDLDGDIYFVCWDSDLIP +QV PMDY+PAPT+RLDHDVTIEEVE+YFTNYIVNDS
Sbjct: 795  ECSGSDLDGDIYFVCWDSDLIPTKQVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDS 854

Query: 995  LGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMD 816
            LGIIANAHTVFADKE  MALSEPCLELARLFSIAVDF KTG+PAEIPPHLRVKEYPDFM+
Sbjct: 855  LGIIANAHTVFADKEPLMALSEPCLELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFME 914

Query: 815  KPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFE 636
            KPDK +Y S+R+IGKLFREVKDIAP T+S RSFTKEVARRSYDPDMEVDGF D++DEAF 
Sbjct: 915  KPDKINYASSRVIGKLFREVKDIAPQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFL 974

Query: 635  YKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWF 456
            +KTEYD KLGNLMEYYG+KTEAE+LSGGIMKMSKTFDRRKD EAI AAVRSLRNE RSWF
Sbjct: 975  HKTEYDYKLGNLMEYYGVKTEAEVLSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWF 1034

Query: 455  KKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRRA 276
            KKG E+DD YAKASAWY+VTYHPD++G YN G+KRDHY+SFPWCVYDKL+KIKKDNSRRA
Sbjct: 1035 KKGTEADDVYAKASAWYYVTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKDNSRRA 1094

Query: 275  SDMASLEREFSRRLNL 228
            S MASL R+F+ R+ +
Sbjct: 1095 SQMASLRRQFNDRVRI 1110


>gb|AHL27585.1| RNA-dependent RNA polymerase 2 [Salvia miltiorrhiza]
          Length = 1101

 Score = 1618 bits (4191), Expect = 0.0
 Identities = 776/1016 (76%), Positives = 875/1016 (86%), Gaps = 1/1016 (0%)
 Frame = -1

Query: 3311 NPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEYRLQL 3132
            N R+F+HE++ +TLNFGCQ S+++FSVLW+A  VSVKFG+ + KMH  +C + VEYRLQL
Sbjct: 91   NHRSFMHELDGLTLNFGCQVSKDRFSVLWRAADVSVKFGSSLNKMHLFVCDDLVEYRLQL 150

Query: 3131 SYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTDFTPS 2952
            SYENIWQIVLYN   QT +LLLIQLFGAPRIYKKL  SV+S++RETPDDQW+RTTDFTPS
Sbjct: 151  SYENIWQIVLYNSSVQTERLLLIQLFGAPRIYKKLEYSVYSFYRETPDDQWVRTTDFTPS 210

Query: 2951 CIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLE 2772
            CIGQSSGLCLQLP  ++LP+F+++F+ Y  S++PF+L  G PF  NL LVPIV PPRGLE
Sbjct: 211  CIGQSSGLCLQLPRHVKLPDFKNNFMHYTVSEEPFQLVNGAPFCGNLPLVPIVQPPRGLE 270

Query: 2771 LPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVA 2592
            LPY++LFKVC LVQTGCLPG KLDT FF+ ++P+R+ IRYIEHAL+KLYYIKECCYDPVA
Sbjct: 271  LPYKLLFKVCSLVQTGCLPGMKLDTEFFQCLNPRRYAIRYIEHALDKLYYIKECCYDPVA 330

Query: 2591 WLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDH 2412
            WL EQY KY+TF E P  P ISLDDGLVY+HRVQ+TPTRVYF+GPEVN+SNRVLR +  H
Sbjct: 331  WLREQYRKYQTFEELPKPPTISLDDGLVYIHRVQVTPTRVYFAGPEVNMSNRVLRQFSAH 390

Query: 2411 VDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLA 2232
            +DNFLRVSF+DEEWDKMYSTDLSPKVA G  N RTKLYER+LSTL+ GI IG K+F FLA
Sbjct: 391  IDNFLRVSFIDEEWDKMYSTDLSPKVATGVGNGRTKLYERVLSTLRNGITIGEKRFQFLA 450

Query: 2231 FSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGE 2052
            FSSSQLR+NSLWMFAP +GL AD IRRWMGDF  IRNVAKYAARLGQSFSSSTETL V +
Sbjct: 451  FSSSQLRENSLWMFAPVDGLTADDIRRWMGDFSSIRNVAKYAARLGQSFSSSTETLKVAQ 510

Query: 2051 REVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVV 1872
             EVE+I D+E VR+GT Y+FSDGIGKIS+DFARRVA KCG +   PSAFQIRYGGYKGVV
Sbjct: 511  YEVERIPDVEVVRDGTTYIFSDGIGKISSDFARRVATKCGIRDGVPSAFQIRYGGYKGVV 570

Query: 1871 AVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTK 1692
            AVDP SS+KLSLR SMLKYQS+NTKLDVLSWSKYQPCF+NRQIITLLSTLGV+D+VF+ K
Sbjct: 571  AVDPTSSMKLSLRKSMLKYQSDNTKLDVLSWSKYQPCFMNRQIITLLSTLGVRDHVFEKK 630

Query: 1691 QREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSS 1512
            QREAVAQLDDILVDPL+AQ+ALDLMSPGEN+NILKEMLKCGYKPD EPFLSMMLQTFR +
Sbjct: 631  QREAVAQLDDILVDPLKAQDALDLMSPGENTNILKEMLKCGYKPDEEPFLSMMLQTFRLA 690

Query: 1511 KLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTD 1332
            KLLDLRVKARIF+PQARQMMGC+DETG LEYGQVFVQFSG G  G YE +          
Sbjct: 691  KLLDLRVKARIFIPQARQMMGCMDETGTLEYGQVFVQFSGTGSSGLYEGT---------- 740

Query: 1331 CNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLD 1152
              Y V G V VAKNPCLHPGDVRVL+A+DV  L HMVDCVVFP +G RPHPNECSGSDLD
Sbjct: 741  -KYTVTGKVAVAKNPCLHPGDVRVLRAVDVPELQHMVDCVVFPRKGRRPHPNECSGSDLD 799

Query: 1151 GDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAH 972
            GD YFVCWD +LIPP Q SPM Y+PAP + LDH+VTIEEVEEYFTNYIVNDSLGIIANAH
Sbjct: 800  GDRYFVCWDPELIPPNQESPMTYNPAPNTLLDHNVTIEEVEEYFTNYIVNDSLGIIANAH 859

Query: 971  TVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYE 792
            T FADKE + ALS PCLELA+LFS+AVDFPKTG+PAEIPPHLRVKEYPDFMDKPDK +Y 
Sbjct: 860  TAFADKERDGALSSPCLELAQLFSVAVDFPKTGIPAEIPPHLRVKEYPDFMDKPDKTTYT 919

Query: 791  STRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNK 612
            S RIIGKL+R+VKDIAPH  S+ SFT EVA RSYD DMEV+GF +Y+DEAFE+KTEYD K
Sbjct: 920  SERIIGKLYRQVKDIAPHAASLGSFTMEVAMRSYDTDMEVEGFREYIDEAFEFKTEYDYK 979

Query: 611  LGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKKGNESDD 432
            LGN+M+YYGIKTEAEILSG IMK SKTFDRRKD +AI A+VR+LRNE RSWFKKG+ES D
Sbjct: 980  LGNMMDYYGIKTEAEILSGAIMKTSKTFDRRKDADAIGASVRALRNEARSWFKKGSESGD 1039

Query: 431  PYAKASAWYHVTYHPDFWGSYNVGLK-RDHYISFPWCVYDKLIKIKKDNSRRASDM 267
             YA ASAWYHVTY   FWG YNVG+K R HYISFPWCVYDKL++IK+  S R S +
Sbjct: 1040 AYAMASAWYHVTYDSSFWGCYNVGMKRRGHYISFPWCVYDKLVQIKRAKSARISSL 1095


>gb|AHL27584.1| RNA-dependent RNA polymerase 1 [Salvia miltiorrhiza]
          Length = 1118

 Score = 1590 bits (4118), Expect = 0.0
 Identities = 771/1036 (74%), Positives = 890/1036 (85%), Gaps = 7/1036 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+ NPRT+ + +E VTLN GCQ S ++FSVLWKA  VS+KFGTG+K MH  LCH SVEY
Sbjct: 23   DIVPNPRTYDNVVEGVTLNLGCQISEDEFSVLWKASDVSIKFGTGLKNMHLFLCHESVEY 82

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            RLQL Y+NIWQIVLYN  GQ A++LLIQL+GAPRI+KKL DSV+SYF++TPDDQW+RTTD
Sbjct: 83   RLQLYYDNIWQIVLYNSGGQAAQVLLIQLYGAPRIHKKLPDSVYSYFQQTPDDQWVRTTD 142

Query: 2963 FTPS-CIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANLALVPIVHP 2787
            FTPS CIGQSSG+CLQ P G++LP F+  FV+YKES+ PF LE GVPF  NL LVPI+ P
Sbjct: 143  FTPSSCIGQSSGMCLQFPSGIKLPEFERHFVYYKESKKPFFLENGVPFCENLDLVPIMQP 202

Query: 2786 PRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECC 2607
             RGLELPYR+LFKVC LVQTGCLPGPKLD NF+RL++PK FDI Y+E  LEKLYY+KECC
Sbjct: 203  -RGLELPYRLLFKVCCLVQTGCLPGPKLDDNFYRLLNPKSFDITYLEQLLEKLYYLKECC 261

Query: 2606 YDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLR 2427
            YDP +WL EQ++ Y TF++ P  PA++  D LV++HRVQ+TPT+VYF GPE NVSNRVLR
Sbjct: 262  YDPHSWLIEQHQNYCTFKK-PKPPAVN--DDLVHIHRVQVTPTKVYFHGPEANVSNRVLR 318

Query: 2426 HYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKK 2247
            ++ DH+DNFLRVSFV+E+W KMY++DLSP+ A GDEN RTKLYER+LSTL+ GI IG+KK
Sbjct: 319  NFHDHIDNFLRVSFVEEDWSKMYASDLSPRGAGGDENTRTKLYERVLSTLRNGITIGSKK 378

Query: 2246 FDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTET 2067
            F+FLAFSSSQLR+NSLWMFAP +GL+AD IRRWMGDF  IRNVAKYAARLGQSF SSTET
Sbjct: 379  FEFLAFSSSQLRENSLWMFAPVDGLNADDIRRWMGDFSSIRNVAKYAARLGQSFGSSTET 438

Query: 2066 LSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGG 1887
            LSV + EVEKI D+E V NGT Y+FSDGIGKIS DFARRVAIKCG KS  PSAFQIRYGG
Sbjct: 439  LSVAQNEVEKIPDVEVVTNGTTYIFSDGIGKISVDFARRVAIKCGLKSNIPSAFQIRYGG 498

Query: 1886 YKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDY 1707
            YKGVVA+DP SSVK+SLRPSMLKYQS++TKL+VL WSKYQPCFLNRQIITLLSTLGV D+
Sbjct: 499  YKGVVAIDPTSSVKMSLRPSMLKYQSDDTKLNVLGWSKYQPCFLNRQIITLLSTLGVMDH 558

Query: 1706 VFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQ 1527
            VF+ KQREAVAQL+DILVDPL+A EALDLMS GEN+ ILKEMLKCGYKPD EPFL+MMLQ
Sbjct: 559  VFEKKQREAVAQLNDILVDPLKALEALDLMSLGENTYILKEMLKCGYKPDEEPFLAMMLQ 618

Query: 1526 TFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNYD 1347
            TFRSS+LLDLR K+RIF+PQAR MMGCLDETG LEYGQVFVQFSGAG+  FYEES    +
Sbjct: 619  TFRSSQLLDLRTKSRIFIPQARNMMGCLDETGTLEYGQVFVQFSGAGQRRFYEESIKFDE 678

Query: 1346 NVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECS 1167
              STD NY+V+G V VAKNPCLHPGD+RVL+AIDV ALHHMV+C+VFP +G RPHPNECS
Sbjct: 679  YTSTDHNYIVKGKVAVAKNPCLHPGDLRVLEAIDVPALHHMVNCIVFPQKGTRPHPNECS 738

Query: 1166 GSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGI 987
            GSDLDGDIY VCWD DLIPP+Q  PMDY+PAP +RLDH+VTI+EV+EYFTNYI+N+SLGI
Sbjct: 739  GSDLDGDIYIVCWDPDLIPPKQFDPMDYNPAPATRLDHEVTIQEVQEYFTNYILNESLGI 798

Query: 986  IANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPD 807
            IANAHTVFADKE +MALS PCLELA+L S+AVDFPKTGVPA+IPP LRVKEYPDFM+K D
Sbjct: 799  IANAHTVFADKEPSMALSSPCLELAQLHSVAVDFPKTGVPAQIPPKLRVKEYPDFMEKLD 858

Query: 806  KNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKT 627
            K ++EST +IGKLFREVK +   TTS+R FTKEVAR SYD DMEVDGF DY+ EAFE KT
Sbjct: 859  KPTFESTGVIGKLFREVKHVTTDTTSLR-FTKEVARSSYDADMEVDGFRDYIKEAFECKT 917

Query: 626  EYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKKG 447
             YD KLGNLM+YYGIKTE EILS  IMK+SKTFDRRK  EAI AAV+SLRNE RSWFKKG
Sbjct: 918  NYDRKLGNLMDYYGIKTEGEILSRAIMKVSKTFDRRKSAEAIGAAVKSLRNEARSWFKKG 977

Query: 446  NESDDPYAKASAWYHVTYHPDFWGSYNVGL-KRDHYISFPWCVYDKLIKIKKDNSRR--- 279
            ++S +PYA ASAWYHVTYH DFWG YN  + KR+HYISFPWCVYDKL++IK +N+R+   
Sbjct: 978  SKSGNPYAMASAWYHVTYHHDFWGHYNKDMKKRNHYISFPWCVYDKLVQIKNENARKYHP 1037

Query: 278  --ASDMASLEREFSRR 237
              +SD   + +E +R+
Sbjct: 1038 TSSSDQVGIRKENARK 1053


>emb|CDP05596.1| unnamed protein product [Coffea canephora]
          Length = 1112

 Score = 1539 bits (3984), Expect = 0.0
 Identities = 749/1038 (72%), Positives = 872/1038 (84%), Gaps = 5/1038 (0%)
 Frame = -1

Query: 3326 IDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVE 3147
            +D++   R+F H MEQ+ L+FGCQ S+ +FSVL    +VSV+FG GM+KM+F+L   S +
Sbjct: 83   VDLVPRARSFEHNMEQIVLHFGCQVSKNRFSVLRNVPNVSVRFGIGMRKMYFILRFRSCD 142

Query: 3146 YRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTT 2967
            Y+L+LSYENIWQIVL+       K LLIQLFGAPR++KKL +S  SYF+ETPDDQW+RTT
Sbjct: 143  YKLELSYENIWQIVLHR-RSLAPKFLLIQLFGAPRVFKKLEESTFSYFKETPDDQWVRTT 201

Query: 2966 DFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANLALVPIVHP 2787
            DFT SCIGQSSG+CL+LP G++LPN  D F ++KES   F LETG P++ NL L PI+ P
Sbjct: 202  DFTSSCIGQSSGICLELPRGIQLPNLGDYFAWFKESDSQFFLETGSPYSYNLVLAPILQP 261

Query: 2786 PRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECC 2607
            P+GL LPY ILFKVC LVQTGCLPGP LD NFFRLVDP+R  IRYIEHALE LY +KECC
Sbjct: 262  PQGLYLPYGILFKVCCLVQTGCLPGPSLDANFFRLVDPQRIKIRYIEHALENLYMLKECC 321

Query: 2606 YDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLR 2427
            Y+PV WL EQY+KY   R+ P SP ++LDDGLVYV RVQ+TP +VYF GPEVNVSNRVLR
Sbjct: 322  YEPVQWLKEQYDKYDKLRQLPKSPTLTLDDGLVYVRRVQVTPCKVYFCGPEVNVSNRVLR 381

Query: 2426 HYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKK 2247
            ++ + +DNFLRVSF+DEEW+KM+STDLSP++AA +EN RT++YERILSTLK G++IG+KK
Sbjct: 382  NFSEDLDNFLRVSFIDEEWNKMFSTDLSPRIAA-NENGRTEIYERILSTLKNGMVIGDKK 440

Query: 2246 FDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTET 2067
            F+FLAFSSSQLRDNS+WMFA   GL A  IR WMGDF  IRNVAKYAARLGQSFSSSTET
Sbjct: 441  FEFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAARLGQSFSSSTET 500

Query: 2066 LSVGEREVEKILDIEAVRNG----TKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQI 1899
            L+VG  E+E I DIE VR G    +KYVFSDGIGK+SA FAR+VA KCG  S TPSAFQI
Sbjct: 501  LNVGRHEIEMISDIE-VRGGYFGTSKYVFSDGIGKMSAQFARQVATKCGL-SFTPSAFQI 558

Query: 1898 RYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLG 1719
            RYGG+KGVVAVDP SS KLSLR SM+KY+S+NTKLDVL+WSKYQPCFLNRQ+ITLLSTLG
Sbjct: 559  RYGGFKGVVAVDPTSSKKLSLRQSMMKYESDNTKLDVLAWSKYQPCFLNRQLITLLSTLG 618

Query: 1718 VKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLS 1539
            VKD VF+ KQREAVAQLD IL DPLRA+EAL+LM+PGEN+N+LKEMLKCGYKPD EPFLS
Sbjct: 619  VKDVVFEKKQREAVAQLDTILTDPLRAREALELMAPGENTNVLKEMLKCGYKPDSEPFLS 678

Query: 1538 MMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESN 1359
            MMLQTFR+SKLLDLR K RIF+P  R M+GCLDET  LEYGQVFVQFS AG   FY++S 
Sbjct: 679  MMLQTFRASKLLDLRTKTRIFIPDGRSMIGCLDETRTLEYGQVFVQFSSAGCRQFYDDSI 738

Query: 1358 MNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHP 1179
              Y++ +     +++G VVVAKNPCLHPGD+R+LKA+D+  LHHMVDCVVFP +G RPH 
Sbjct: 739  SYYEHKT-----ILKGTVVVAKNPCLHPGDIRILKAVDLPTLHHMVDCVVFPQKGKRPHT 793

Query: 1178 NECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVND 999
            NECSGSDLDGDIYFVCWD DLIPPRQ  PMDY+PAPT +L+H+VTIEEVEEYFTNYIVND
Sbjct: 794  NECSGSDLDGDIYFVCWDPDLIPPRQDEPMDYTPAPTMQLEHEVTIEEVEEYFTNYIVND 853

Query: 998  SLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFM 819
            SLGIIANAHTVFAD+E   A S+PCLELARLFSIAVDFPKTGVPAEI  HLRVKEYPDFM
Sbjct: 854  SLGIIANAHTVFADRELLKARSKPCLELARLFSIAVDFPKTGVPAEITSHLRVKEYPDFM 913

Query: 818  DKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAF 639
            +K DK +Y+S  +IGKLFREVK+IAPHT+SIRSFT+EVAR+SYD DMEVDGF DYVDEAF
Sbjct: 914  EKSDKTTYDSQHVIGKLFREVKEIAPHTSSIRSFTREVARKSYDIDMEVDGFEDYVDEAF 973

Query: 638  EYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSW 459
            +YK+EYD KLGNLM+YYGIKTEAEILSGGIMKMS++FDRRKD EA+  AVRSLR E R+W
Sbjct: 974  DYKSEYDYKLGNLMDYYGIKTEAEILSGGIMKMSRSFDRRKDAEAVGMAVRSLRKEARTW 1033

Query: 458  F-KKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSR 282
            F + G  SDD +AKASAWY+VTYHP +WG YN GL R HYISFPWC+YD+LI+IKK  +R
Sbjct: 1034 FNRNGGHSDDAFAKASAWYYVTYHPRYWGCYNEGLNRAHYISFPWCIYDRLIQIKKARTR 1093

Query: 281  RASDMASLEREFSRRLNL 228
            RA   +SLE +F+ RL L
Sbjct: 1094 RAQQPSSLEVQFNHRLRL 1111


>ref|XP_009623376.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Nicotiana
            tomentosiformis] gi|697138603|ref|XP_009623378.1|
            PREDICTED: probable RNA-dependent RNA polymerase 1
            [Nicotiana tomentosiformis]
            gi|697138605|ref|XP_009623379.1| PREDICTED: probable
            RNA-dependent RNA polymerase 1 [Nicotiana
            tomentosiformis] gi|697138607|ref|XP_009623380.1|
            PREDICTED: probable RNA-dependent RNA polymerase 1
            [Nicotiana tomentosiformis]
          Length = 1116

 Score = 1497 bits (3876), Expect = 0.0
 Identities = 730/1034 (70%), Positives = 863/1034 (83%), Gaps = 4/1034 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+Q PRT+V  M+ VTLNFGCQ S +KF+VL  ++ VS+KFG G+KK++F L H S +Y
Sbjct: 84   DIVQ-PRTYVEHMDGVTLNFGCQISDKKFAVLG-SKDVSIKFGIGLKKIYFFLSHASADY 141

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            +LQLSYENIWQ+VL+ P+GQ A+ LL+QLFGAPRIYK+L DS +S+F+ETPDDQW+RTTD
Sbjct: 142  KLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEDSCYSFFKETPDDQWVRTTD 201

Query: 2963 FTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAAN--LALVPIVH 2790
            FTPS IG SS LCL+   G++LPNF +SF +YKES + F L+TG  F+ +  LALVPIVH
Sbjct: 202  FTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVH 261

Query: 2789 PPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKEC 2610
             P G+ELPY+ILFK+  L+Q GC PG  L+ NFF+LVDP+R +I  IEHALEKLYY+KEC
Sbjct: 262  LPEGVELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKEC 321

Query: 2609 CYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVL 2430
            CYDPV WL EQY++Y   R+ P SP+I+LDDGLVYV RV +TP +VYF GPEVNVSNRVL
Sbjct: 322  CYDPVRWLTEQYDEYLKGRQLPKSPSITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVL 381

Query: 2429 RHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNK 2250
            R+Y + ++NFLRVSFVDEEW+K++STDL P+ + G+   RT +YERILSTL+ G IIG+K
Sbjct: 382  RNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGN-GTRTDIYERILSTLRNGFIIGDK 440

Query: 2249 KFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTE 2070
            +F+FLAFSSSQLRDNS+WMFA   GL A+ IR WMGDFR IRNVAKYAARLGQSF SS E
Sbjct: 441  RFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRE 500

Query: 2069 TLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYG 1890
            TLSVG  EVE I D+    +GT Y+FSDGIGKISADFA RVAIKCG +  TPS+FQIRYG
Sbjct: 501  TLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFAHRVAIKCGLQY-TPSSFQIRYG 559

Query: 1889 GYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKD 1710
            GYKGVVAVDP SS+KLSLR SMLKY+S N KLDVL WSKYQPC+LNRQ++TLLSTLGV D
Sbjct: 560  GYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVID 619

Query: 1709 YVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMML 1530
             V + KQ EAV QLD IL D L+AQEAL+LMSPGEN+NILKEML CGY PD EPFLSMML
Sbjct: 620  DVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMML 679

Query: 1529 QTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNY 1350
            QTFR+SKLLDLR + RIF+P  R MMGCLDE+  LEYGQVFVQFS AGR  FYEES+   
Sbjct: 680  QTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSRAGRRQFYEESHPFN 739

Query: 1349 DNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNEC 1170
            D+ S +C+++++GNVVVAKNPCLHPGD+RVL+A+DV ALHHMVDCVVFP +G RPHPNEC
Sbjct: 740  DSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 799

Query: 1169 SGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLG 990
            SGSDLDGDIYFVCWD DLIPPRQV PMDY+PAPT++LDHDVTIEEVEEYFTNYIVNDSLG
Sbjct: 800  SGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPTTQLDHDVTIEEVEEYFTNYIVNDSLG 859

Query: 989  IIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKP 810
            IIANAH VFAD+E +MA+S+PC +LA+LFSIAVDFPKTGVPAEIP  LR KEYPDFM+KP
Sbjct: 860  IIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKP 919

Query: 809  DKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYK 630
            DK +Y S ++IGKLF++VK+  P  +SI +FT++VAR+SYD DM VDGF DY+DEAF YK
Sbjct: 920  DKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYK 979

Query: 629  TEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKK 450
            +EYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFDRRKD EAI  AVR LR E R+WFK+
Sbjct: 980  SEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKR 1039

Query: 449  GNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR--A 276
             ++ DD  AKASAWYHVTYH  +WG YN GLKRDH+ISFPWCVYD+LI+IKK  +R+   
Sbjct: 1040 RSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKRPV 1099

Query: 275  SDMASLEREFSRRL 234
              ++SL  + SR+L
Sbjct: 1100 PHLSSLGSQLSRKL 1113


>ref|XP_009781107.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Nicotiana
            sylvestris] gi|698458664|ref|XP_009781108.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 [Nicotiana
            sylvestris] gi|698458668|ref|XP_009781109.1| PREDICTED:
            probable RNA-dependent RNA polymerase 1 [Nicotiana
            sylvestris]
          Length = 1116

 Score = 1496 bits (3873), Expect = 0.0
 Identities = 732/1036 (70%), Positives = 862/1036 (83%), Gaps = 4/1036 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+Q PRT+V  M+ VTLNFGC  S +KF+VL  ++ VSVKFG G+KK++F L H S +Y
Sbjct: 84   DIVQ-PRTYVQHMDGVTLNFGCLISDKKFAVLG-SKGVSVKFGIGLKKIYFFLSHASADY 141

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            +LQLSYENIWQ+VL+ P+GQ A+ LL+QLFGAPRIYK+L  S +S+F+ETPDDQW+RTTD
Sbjct: 142  KLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEGSCYSFFKETPDDQWVRTTD 201

Query: 2963 FTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFA--ANLALVPIVH 2790
            FT S IG SS LCL+   G RLPNF +SF +YKES     L+TG  F+   NLALVPIVH
Sbjct: 202  FTTSWIGLSSSLCLEFRNGGRLPNFSESFFYYKESVSQVILQTGFTFSFSQNLALVPIVH 261

Query: 2789 PPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKEC 2610
             P G+ELPY+ILFK+  L+Q GC PG  L+ NFF+LVDP+R +I  IEHALEKLYY+KEC
Sbjct: 262  LPEGVELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKEC 321

Query: 2609 CYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVL 2430
            CYDPV WL EQY++Y   R+ P SP+I+LDDGLVYV RV +TP +VYF GPEVNVSNRVL
Sbjct: 322  CYDPVRWLTEQYDEYLNRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVL 381

Query: 2429 RHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNK 2250
            R+Y + +DNFLRVSFVDEEW+K++STDL  + ++G+   RT +YERILSTL+ G IIG+K
Sbjct: 382  RNYSEDIDNFLRVSFVDEEWEKIHSTDLLTRASSGN-GIRTDIYERILSTLRNGFIIGDK 440

Query: 2249 KFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTE 2070
            +F+FLAFSSSQLRDNS+WMFA   GL A+ IR WMGDF+ IRNVAKYAARLGQSF SS E
Sbjct: 441  RFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFQQIRNVAKYAARLGQSFGSSRE 500

Query: 2069 TLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYG 1890
            TLSVG  E E I D+    +GT Y+FSDGIGKISADFARRVAIKCG +  TPS+FQIRYG
Sbjct: 501  TLSVGRHEAEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAIKCGLQY-TPSSFQIRYG 559

Query: 1889 GYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKD 1710
            GYKGVVAVDP SS+KLSLR SMLKY+S N KLDVL WSKYQPC+LNRQ++TLLSTLGVKD
Sbjct: 560  GYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKD 619

Query: 1709 YVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMML 1530
             VF+ KQ EAV QLD IL D L+AQEAL+LMSPGEN+NILKEML CGY PD EPFLSMML
Sbjct: 620  DVFEQKQNEAVEQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMML 679

Query: 1529 QTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNY 1350
            QTFR+SKLLDLR ++RIF+P  R MMGCLDE+  LEYGQVFVQF+G GR  FYEES+   
Sbjct: 680  QTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFN 739

Query: 1349 DNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNEC 1170
            D+ ST+CN+++EGNVVVAKNPCLHPGD+RVL+A+DV ALHHMVDCVVFP +G RPHPNEC
Sbjct: 740  DSGSTNCNFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 799

Query: 1169 SGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLG 990
            SGSDLDGDIYFVCWD DLIPPRQV PMDY+PAP+++LDHDVTIEEV+EYFTNYIVNDSLG
Sbjct: 800  SGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSTQLDHDVTIEEVQEYFTNYIVNDSLG 859

Query: 989  IIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKP 810
            IIANAH VFAD+E +MA+S+PC +LA+LFSIAVDFPKTGVPAEIP  LR KEYPDFM+KP
Sbjct: 860  IIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKP 919

Query: 809  DKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYK 630
            DK +Y S ++IGKLF++VKD  P  +SI +FT +VAR+SYD DM V+GF DY+DEAF YK
Sbjct: 920  DKPTYHSEKVIGKLFQKVKDKTPQASSIATFTMDVARKSYDGDMIVNGFEDYIDEAFYYK 979

Query: 629  TEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKK 450
            +EYDNKLGNLM+YYG+KTEAEILSGGIMK SKTFDRRKD EAI  AVRSLR E R+WFKK
Sbjct: 980  SEYDNKLGNLMDYYGVKTEAEILSGGIMKASKTFDRRKDAEAIGIAVRSLRKEARTWFKK 1039

Query: 449  GNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR--A 276
             ++ DD  AKASAWYHVTYH  +WG YN GLKRDH+ISFPWCVYD+LI+IKK  +R+   
Sbjct: 1040 RSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKKPV 1099

Query: 275  SDMASLEREFSRRLNL 228
              ++SL  + SR+L L
Sbjct: 1100 LHLSSLGNQLSRKLVL 1115


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1494 bits (3867), Expect = 0.0
 Identities = 727/1034 (70%), Positives = 861/1034 (83%), Gaps = 4/1034 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+Q PRT+V  M+ VTLNFGCQ S +KF+VL  ++ VS+KFG G+KK++F L H S +Y
Sbjct: 84   DIVQ-PRTYVEHMDGVTLNFGCQISDKKFAVLG-SKDVSIKFGIGLKKIYFFLSHASADY 141

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            +LQLSYENIWQ+VL+ P+GQ A+ LL+QLFGAPRIYK+L DS +S+F+ETPDDQW+RTTD
Sbjct: 142  KLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEDSCYSFFKETPDDQWVRTTD 201

Query: 2963 FTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAAN--LALVPIVH 2790
            FTPS IG SS LCL+   G++LPNF +SF +YKES + F L+TG  F+ +  LALVPIVH
Sbjct: 202  FTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVH 261

Query: 2789 PPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKEC 2610
             P G+ELPY+ILFK+  L+Q GC PG  L+ NFF+LVDP+R +I  IEHALEKLYY+KEC
Sbjct: 262  LPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKEC 321

Query: 2609 CYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVL 2430
            CYDPV WL EQY++Y   R+ P SP I+LDDGLVYV RV +TP +VYF GPEVNVSNRVL
Sbjct: 322  CYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVL 381

Query: 2429 RHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNK 2250
            R+Y + ++NFLRVSFVDEEW+K++STDL P+ + G+   RT +YERILSTL+ G IIG+K
Sbjct: 382  RNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTGN-GTRTDIYERILSTLRNGFIIGDK 440

Query: 2249 KFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTE 2070
            +F+FLAFSSSQLRDNS+WMFA   GL A+ IR WMGDFR IRNVAKYAARLGQSF SS E
Sbjct: 441  RFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRE 500

Query: 2069 TLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYG 1890
            TLSVG  EVE I D+    +GT Y+FSDGIGKISADFA RV IKCG +  TPS+FQIRYG
Sbjct: 501  TLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQY-TPSSFQIRYG 559

Query: 1889 GYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKD 1710
            GYKGVVAVDP SS+KLSLR SMLKY+S N KLDVL WSKYQPC+LNRQ++TLLSTLGV D
Sbjct: 560  GYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVID 619

Query: 1709 YVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMML 1530
             V + KQ EAV QLD IL D L+AQEAL+LMSPGEN+NILKEML CGY PD EPFLSMML
Sbjct: 620  DVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMML 679

Query: 1529 QTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNY 1350
            QTFR+SKLLDLR + RIF+P  R MMGCLDE+  LEYGQVFVQFSGAGR  F+EES+   
Sbjct: 680  QTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFN 739

Query: 1349 DNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNEC 1170
            D+ S +C+++++GNVVVAKNPCLHPGD+RVL+A+DV ALHHMVDCVVFP +G RPHPNEC
Sbjct: 740  DSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 799

Query: 1169 SGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLG 990
            SGSDLDGDIYFVCWD DLIPPRQV  MDY+PAPT++LDHDVTIEEVEEYFTNYI+NDSLG
Sbjct: 800  SGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLG 859

Query: 989  IIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKP 810
            IIANAH VFAD+E +MA+S+PC +LA+LFSIAVDFPKTGVPAEIP  LR KEYPDFM+KP
Sbjct: 860  IIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKP 919

Query: 809  DKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYK 630
            DK +Y S ++IGKLF++VK+  P  +SI +FT++VAR+SYD DM VDGF DY+DEAF YK
Sbjct: 920  DKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYK 979

Query: 629  TEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKK 450
            +EYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFDRRKD EAI  AVR LR E R+WFK+
Sbjct: 980  SEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKR 1039

Query: 449  GNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR--A 276
             ++ DD  AKASAWYHVTYH  +WG YN GLKRDH+ISFPWCVYD+LI+IKK  +R+   
Sbjct: 1040 RSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKRPV 1099

Query: 275  SDMASLEREFSRRL 234
              ++SL  + SR+L
Sbjct: 1100 PHLSSLGSQLSRKL 1113


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1489 bits (3856), Expect = 0.0
 Identities = 724/1035 (69%), Positives = 860/1035 (83%), Gaps = 5/1035 (0%)
 Frame = -1

Query: 3317 IQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEYRL 3138
            I  PRT+V  M+ VTLNFGCQ S +KF+VL  ++ VS+KFG G+KK++F L + S +Y+L
Sbjct: 85   IVQPRTYVQHMDGVTLNFGCQISDKKFAVLG-SKVVSIKFGIGLKKIYFFLSYGSTDYKL 143

Query: 3137 QLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTDFT 2958
            QLSYENIWQ+VL+ P+GQ A+ LL+QL GAPRIYK+L DS +S+F+ETPDDQW+RTTDFT
Sbjct: 144  QLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRIYKRLEDSCYSFFKETPDDQWVRTTDFT 203

Query: 2957 PSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAAN---LALVPIVHP 2787
            PS IG SS LCL+   G+RLPNF +SF +YKES +   L+TG  F+ +   LALVPIVH 
Sbjct: 204  PSWIGLSSSLCLEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHL 263

Query: 2786 PRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECC 2607
            P G+ELPY+ILFK+  L+Q GC PG  L+ NFF+LVDP+R +I  IEHALEKLYY+KECC
Sbjct: 264  PEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYLKECC 323

Query: 2606 YDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLR 2427
            YDPV WL EQY++Y   R+ P SP+I+LDDGLVYV RV +TP +VYF GPEVNVSNRVLR
Sbjct: 324  YDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLR 383

Query: 2426 HYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKK 2247
            +Y + +DNFLRVSFVDEEW+K++STDL P+ + G+   RT +Y RILSTL+ G +IG+KK
Sbjct: 384  NYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGN-GVRTDIYLRILSTLRNGFVIGDKK 442

Query: 2246 FDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTET 2067
            F+FLAFSSSQLRDNS+WMFA   GL A+ IR WMG F+ IRNVAKYAARLGQSF SS ET
Sbjct: 443  FEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRET 502

Query: 2066 LSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGG 1887
            LSVG  EVE I D+    +GT Y+FSDGIGKISADFARRVA+KCG +  TPS FQIRYGG
Sbjct: 503  LSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQY-TPSCFQIRYGG 561

Query: 1886 YKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDY 1707
            YKGVVAVDP SS+KLSLR SMLKY+S N KLDVL WSKYQPC+LNRQ++TLLSTLGVKD 
Sbjct: 562  YKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDD 621

Query: 1706 VFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQ 1527
            VF+ KQ EAV QLD IL D L+AQEAL+LMSPGEN+NILKEML CGY PD EPFLSMMLQ
Sbjct: 622  VFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQ 681

Query: 1526 TFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNYD 1347
            TFR+SKLLDLR ++RIF+P  R MMGCLDE+  LEYGQVFVQF+G GR  FYEES+   D
Sbjct: 682  TFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFND 741

Query: 1346 NVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECS 1167
            + ST+C++++EGNVVVAKNPCLHPGD+RVL+A+DV ALHHMVDCVVFP +G RPHPNECS
Sbjct: 742  SGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECS 801

Query: 1166 GSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGI 987
            GSDLDGDIYFVCWD DL+PPRQ  PMDY+PAP+++LDHDVTIEEVEEYFTNYIVNDSLGI
Sbjct: 802  GSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGI 861

Query: 986  IANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPD 807
            IANAH VFAD+E +MA+S+PC +LA+LFSIAVDFPKTGVPAEIP  LR KEYPDFM+KPD
Sbjct: 862  IANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPD 921

Query: 806  KNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKT 627
            K +Y S ++IGKLF++VKD  P  +SI +FT +VAR+SYD DM V+GF DY+DEAF YK+
Sbjct: 922  KPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKS 981

Query: 626  EYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKKG 447
            EYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFDRRKD +AI  AVRSLR E R+WFK+ 
Sbjct: 982  EYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRR 1041

Query: 446  NESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR--AS 273
            ++ DD  AKASAWYHVTYH  +WG YN GLKRDH+ISFPWC+YD+LI+IKK  +R+    
Sbjct: 1042 SDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKKPVL 1101

Query: 272  DMASLEREFSRRLNL 228
             ++SL  + SR+L L
Sbjct: 1102 HLSSLGNQLSRKLVL 1116


>emb|CDP05599.1| unnamed protein product [Coffea canephora]
          Length = 1113

 Score = 1489 bits (3855), Expect = 0.0
 Identities = 730/1035 (70%), Positives = 850/1035 (82%), Gaps = 5/1035 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            D++  PRT+ H MEQ+ LNFGCQ S  +FSVL    +VSV+FG GM+KM+F+L   S +Y
Sbjct: 84   DLVPRPRTYEHHMEQIVLNFGCQVSENRFSVLCNVPNVSVRFGIGMRKMYFILHFRSCDY 143

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            +L+LS EN+WQIVL+   GQ AK LLIQL GAPR+++KL +S  SYF+ETPDD+W+RTTD
Sbjct: 144  KLELSDENLWQIVLHR-RGQAAKFLLIQLLGAPRVFQKLEESTFSYFQETPDDRWLRTTD 202

Query: 2963 FTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANLALVPIVHPP 2784
            FT SCIGQSSG+CL+LP G++LPN +D F +YKES   F LETG P++ NL L PI+HPP
Sbjct: 203  FTSSCIGQSSGICLKLPRGIKLPNLRDYFPWYKESDSQFTLETGSPYSYNLVLAPILHPP 262

Query: 2783 RGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCY 2604
            RGL LPY ILFKVC LVQ GCLPGP LD NFFRLVDP+R DIRYIEHALE LY + +CCY
Sbjct: 263  RGLYLPYGILFKVCCLVQNGCLPGPSLDANFFRLVDPQRRDIRYIEHALENLYILNDCCY 322

Query: 2603 DPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRH 2424
            +PV WL EQY+KY    + P SP ++L+ GLVYV RVQ+TP +VYF GPEVNVSNRVLRH
Sbjct: 323  EPVQWLKEQYDKYDKLLQLPISPTLTLEGGLVYVRRVQVTPCKVYFCGPEVNVSNRVLRH 382

Query: 2423 YRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKF 2244
            + + + NFLRVSF+DEE +KM++TDLSP++AA + N+RTK+YERILSTLK GI+IG+KKF
Sbjct: 383  FSEDIGNFLRVSFIDEEGNKMFATDLSPRIAA-NVNQRTKIYERILSTLKNGIVIGDKKF 441

Query: 2243 DFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETL 2064
            +FLAFSSSQLRDNS+WMFA   GL A  IR WMGDF  IRNVAKYAARLGQSFSSSTETL
Sbjct: 442  EFLAFSSSQLRDNSVWMFASRPGLTAADIRTWMGDFSRIRNVAKYAARLGQSFSSSTETL 501

Query: 2063 SVGEREVEKILDIEAVRNG----TKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIR 1896
            +VG  E+E I DIE VR G    +KYVFSDGIGKISA FAR+VA KCGF ++TPSAFQIR
Sbjct: 502  NVGTHEIEMIPDIE-VRGGYFGASKYVFSDGIGKISAQFARQVARKCGFITSTPSAFQIR 560

Query: 1895 YGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGV 1716
            YGG+KGVVAVDP SS KLSLR SM KY+S NTKLDVL+WSKYQPCFLNR IITLLSTLGV
Sbjct: 561  YGGFKGVVAVDPTSSKKLSLRQSMKKYESNNTKLDVLAWSKYQPCFLNRHIITLLSTLGV 620

Query: 1715 KDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSM 1536
            KD VF+ KQ EAV++LD IL DPLRA EALDLM+ GEN N+LKEMLKCGYKP+ EPFLSM
Sbjct: 621  KDIVFEKKQCEAVSRLDTILTDPLRAHEALDLMASGENMNVLKEMLKCGYKPNSEPFLSM 680

Query: 1535 MLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNM 1356
            MLQTFR+SKLL+LR K RIF+P  R M+GCLDET  LEYGQVFVQ S AG G FY++SN 
Sbjct: 681  MLQTFRTSKLLELRTKTRIFIPNGRSMIGCLDETRTLEYGQVFVQLSSAGHGQFYDDSNQ 740

Query: 1355 NYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPN 1176
              +      N ++E  VVVAKNPCLHPGDVR+LKA+++ ALHHM+DCVVFP +G RPHPN
Sbjct: 741  YSEQ-----NVILEEKVVVAKNPCLHPGDVRILKAVNLPALHHMMDCVVFPQKGKRPHPN 795

Query: 1175 ECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDS 996
            ECSGSDLDGD YFVCWD DLIPPRQ  PMDY+PAPT +LDH VTIEEVEEYFT+YIVN+S
Sbjct: 796  ECSGSDLDGDTYFVCWDPDLIPPRQDRPMDYTPAPTMQLDHKVTIEEVEEYFTDYIVNNS 855

Query: 995  LGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMD 816
            LGIIANAHTVFAD+E   A SEPCLELA L SIAVDFPKTGVPAEIP HLRVKE+PDFM+
Sbjct: 856  LGIIANAHTVFADREPLKARSEPCLELAELHSIAVDFPKTGVPAEIPSHLRVKEFPDFME 915

Query: 815  KPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFE 636
            K DK  Y+S R+IGKLFREVK  AP T+SI+SFTK+VAR+SYD DMEVDGF DY+ EAF+
Sbjct: 916  KSDKPMYDSQRVIGKLFREVKGKAPLTSSIKSFTKQVARKSYDSDMEVDGFEDYIAEAFD 975

Query: 635  YKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWF 456
            YK+EYD KLGNLM+YYGI+TEAEILSGGIMKMS++FDRR D EA+  A+ SLR E ++WF
Sbjct: 976  YKSEYDYKLGNLMDYYGIETEAEILSGGIMKMSRSFDRRNDAEAVGRAMTSLRKEAKTWF 1035

Query: 455  K-KGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR 279
               G+   D  AKASAWYHVTYHP +WG YN GL R HYISFPWCVYDKLI+IKK + RR
Sbjct: 1036 NTNGDHFGDACAKASAWYHVTYHPKYWGCYNKGLNRAHYISFPWCVYDKLIQIKKASIRR 1095

Query: 278  ASDMASLEREFSRRL 234
            +  ++ LE +FS  L
Sbjct: 1096 SQQISLLELQFSHGL 1110


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1489 bits (3854), Expect = 0.0
 Identities = 728/1037 (70%), Positives = 854/1037 (82%), Gaps = 4/1037 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+Q  R +V +M+ +TLNFGCQ S +KF+VL   E VS++FG G+KK  F L   S +Y
Sbjct: 84   DIVQL-RAYVDQMDGITLNFGCQISDDKFAVLGSTE-VSIQFGIGLKKFFFFLSSGSADY 141

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            +LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRIYK+L +S +S+F+ETPDDQW+RTTD
Sbjct: 142  KLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDDQWVRTTD 201

Query: 2963 FTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPF--AANLALVPIVH 2790
            F PS IG SS LCLQ   G+RLPNF++SF  Y E ++   L+TG  F  +   ALVP V 
Sbjct: 202  FPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQ 261

Query: 2789 PPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKEC 2610
            PP G+ +PY+ILFK+  LVQ GC+PGP L+  FFRLVDP+R ++  IEHALEKLYYIKEC
Sbjct: 262  PPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIKEC 321

Query: 2609 CYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVL 2430
            CYDPV WL EQY+ Y   R+ P SP+I+LDDGLVYV RV +TP +VYF GPEVNVSNRVL
Sbjct: 322  CYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVL 381

Query: 2429 RHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNK 2250
            R+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G    RT +YERILSTL++G +IG+K
Sbjct: 382  RNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGS-GVRTNIYERILSTLRKGFVIGDK 440

Query: 2249 KFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTE 2070
            KF+FLAFSSSQLRDNS+WMFA   GL A+ IR WMGDF  I+NVAKYAARLGQSF SS E
Sbjct: 441  KFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRE 500

Query: 2069 TLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYG 1890
            TLSV   E+E I D++   +GT YVFSDGIGKIS DFA RVA KCG +  TPSAFQIRYG
Sbjct: 501  TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQY-TPSAFQIRYG 557

Query: 1889 GYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKD 1710
            GYKGVV VDPDSS+KLSLR SM KY+S+N KLDVL WSKYQPC+LNRQ+ITLLSTLGVKD
Sbjct: 558  GYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKD 617

Query: 1709 YVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMML 1530
             V + KQ+EAV QLD IL D L+AQEAL+LMSPGEN+NILK ML CGYKPD EPFLSMML
Sbjct: 618  EVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMML 677

Query: 1529 QTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNY 1350
            QTFR+SKLLDLR ++RIF+P  R MMGCLDE+  LEYGQVFVQF+GAG G F ++ +   
Sbjct: 678  QTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFN 737

Query: 1349 DNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNEC 1170
            ++ ST+ N++++GNVVVAKNPCLHPGD+RVLKA++VRALHHMVDCVVFP +G RPHPNEC
Sbjct: 738  NSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNEC 797

Query: 1169 SGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLG 990
            SGSDLDGDIYFVCWD D+IPPRQV PM+Y PAP+ +LDHDVTIEEVEEYFTNYIVNDSLG
Sbjct: 798  SGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLG 857

Query: 989  IIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKP 810
            IIANAH VFAD+E +MA+S+PC +LA LFSIAVDFPKTGVPAEIP  LR KEYPDFMDKP
Sbjct: 858  IIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKP 917

Query: 809  DKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYK 630
            DK SY S R+IGKLFR+VKD AP  +SI +FT++VARRSYD DMEVDGF DY+DEAF+YK
Sbjct: 918  DKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYK 977

Query: 629  TEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKK 450
            TEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFDRRKD EAIS AVR+LR E R+WFK+
Sbjct: 978  TEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKR 1037

Query: 449  GNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR--A 276
             N+ DD   KASAWYHVTYHP +WG YN GLKR H+ISFPWCVYD+LI+IKKD +R    
Sbjct: 1038 RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKARNRPV 1097

Query: 275  SDMASLEREFSRRLNLR 225
             +++SL  + S RL L+
Sbjct: 1098 LNLSSLRAQLSHRLVLK 1114


>ref|XP_015076567.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Solanum
            pennellii]
          Length = 1114

 Score = 1486 bits (3846), Expect = 0.0
 Identities = 726/1037 (70%), Positives = 854/1037 (82%), Gaps = 4/1037 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+Q  R +V +M+ +TLNFGCQ S +KF+VL   E VS++FG G+KK  F L   S +Y
Sbjct: 84   DIVQL-RAYVDQMDGITLNFGCQISDDKFAVLGSTE-VSIQFGIGLKKFFFFLSSGSADY 141

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            +LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRIYK+L +S +S+F+ETPDDQW+RTTD
Sbjct: 142  KLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDDQWVRTTD 201

Query: 2963 FTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPF--AANLALVPIVH 2790
            F PS IG SS LCLQ   G+RLPNFQ+SF  Y E ++ F L+TG  F  +   ALVP V 
Sbjct: 202  FPPSWIGLSSSLCLQFRRGVRLPNFQESFFHYAERENNFTLQTGFTFFVSQKSALVPNVQ 261

Query: 2789 PPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKEC 2610
            PP G+ +PY+ILFK+  LVQ GC+PGP L+  FFRLVDP+R ++  IEHALEKLYY+KEC
Sbjct: 262  PPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYLKEC 321

Query: 2609 CYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVL 2430
            CYDPV WL EQY+ Y   R+ P SP+I+LDDGLVYV RV +TP +VYF GPEVNVSNRVL
Sbjct: 322  CYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVL 381

Query: 2429 RHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNK 2250
            R+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G+   RT +YERILSTL++G +IG+K
Sbjct: 382  RNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN-GIRTNIYERILSTLRKGFVIGDK 440

Query: 2249 KFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTE 2070
            KF+FLAFSSSQLRDNS+WMFA   GL A+ IR WMGDF  I+NVAKYAARLGQSF SS E
Sbjct: 441  KFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRE 500

Query: 2069 TLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYG 1890
            TLSV   E+E I D++   +GT YVFSDGIGKIS DFA RVA KCG +  TPSAFQIRYG
Sbjct: 501  TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQY-TPSAFQIRYG 557

Query: 1889 GYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKD 1710
            GYKGVV VDPDSS+KLSLR SM KY+S+N KLDVL WSKYQPC+LNRQ++TLLSTLGVKD
Sbjct: 558  GYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKD 617

Query: 1709 YVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMML 1530
             V + KQ+EAV QLD IL D L+AQEAL+LMSPGEN+NILK ML CGYKPD EPFLSMML
Sbjct: 618  EVLELKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMML 677

Query: 1529 QTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNY 1350
            QTFR+SKLLDLR ++RIF+P  R MMGCLDE+  LEYGQVFVQF+GAG   F ++ +   
Sbjct: 678  QTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHREFSDDLHPFN 737

Query: 1349 DNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNEC 1170
            ++ ST+ N++++GNVVVAKNPCLHPGD+RVL+A++VRALHHMVDCVVFP +G RPHPNEC
Sbjct: 738  NSRSTNSNFILKGNVVVAKNPCLHPGDIRVLRAVNVRALHHMVDCVVFPQKGKRPHPNEC 797

Query: 1169 SGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLG 990
            SGSDLDGDIYFVCWD D+IPPRQV PM+Y PAP+ +LDH+VTIEEVEEYFTNYIVNDSLG
Sbjct: 798  SGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLG 857

Query: 989  IIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKP 810
            IIANAH VFAD+E +MA+S+PC +LA LFSIAVDFPKTGVPAEIP  LR KEYPDFMDKP
Sbjct: 858  IIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKP 917

Query: 809  DKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYK 630
            DK SY S R+IGKLFR+VKD AP  +SI +FT+EVARRSYD DMEVDGF DY+DEAF+YK
Sbjct: 918  DKTSYISERVIGKLFRKVKDKAPQASSIATFTREVARRSYDADMEVDGFEDYIDEAFDYK 977

Query: 629  TEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKK 450
            TEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFDRRKD EAIS AVR+LR E R+WFK+
Sbjct: 978  TEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKR 1037

Query: 449  GNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR--A 276
             N+ DD   KASAWYHVTYHP +WG YN GLKR H+ISFPWCVYD+LI+IKKD +R    
Sbjct: 1038 RNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKARNRPV 1097

Query: 275  SDMASLEREFSRRLNLR 225
              ++SL  + S RL L+
Sbjct: 1098 LSLSSLRAQLSHRLVLK 1114


>ref|XP_015895367.1| PREDICTED: RNA-dependent RNA polymerase 1 [Ziziphus jujuba]
          Length = 1126

 Score = 1483 bits (3840), Expect = 0.0
 Identities = 725/1048 (69%), Positives = 851/1048 (81%), Gaps = 16/1048 (1%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+  PRT++H +E +TL+FGCQ S+EKFSVLWK E+VSV FG G++++HF   +  VEY
Sbjct: 84   DIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKRENVSVDFGIGLRRLHFHFMYQYVEY 143

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKK--------LNDSVHSYFRETPD 2988
            +LQLSYENIWQI L+ P GQT K LLIQL+GAPRIY+K          D + ++F++TPD
Sbjct: 144  KLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIYEKDVPSSGDVYEDPIFNFFKDTPD 203

Query: 2987 DQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANL 2811
            DQW+R TDFTPSC IGQSS LCL+LP G RLPNF+++F +YKES+  F LETG PF+ NL
Sbjct: 204  DQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKENFAYYKESEGRFSLETGFPFSCNL 263

Query: 2810 ALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEK 2631
             LVPIV PP  + LPY I+FK+  L+Q GCL GP LD  F+RLVDP+R ++  IEHAL+K
Sbjct: 264  YLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPSLDAAFYRLVDPRRINVACIEHALDK 323

Query: 2630 LYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEV 2451
            LY +KECCY+P  WLNEQY KY   +  P SP ISLD GLVYV RVQITP +VYF GPE+
Sbjct: 324  LYNLKECCYEPSTWLNEQYRKYFKSKRPPKSPMISLDAGLVYVRRVQITPCKVYFFGPEI 383

Query: 2450 NVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKE 2271
            NVSNRVLRHY +H+DNFLRVSFVDEE DKMYSTDLSP+ +A     +T LY+R+LS L++
Sbjct: 384  NVSNRVLRHYPNHIDNFLRVSFVDEELDKMYSTDLSPRNSA----TKTGLYKRVLSVLRD 439

Query: 2270 GIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQ 2091
            GIIIGNKKF+FLAFSSSQLRDNS WMFAP++G+ A  IR WMGDFR IRNVAKYAARLGQ
Sbjct: 440  GIIIGNKKFEFLAFSSSQLRDNSTWMFAPSDGITAADIREWMGDFRQIRNVAKYAARLGQ 499

Query: 2090 SFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPS 1911
            SF SSTETLSV   EVEKI DIE V  G KY FSDGIGKIS++FAR+VA KCG    TPS
Sbjct: 500  SFGSSTETLSVSRHEVEKIPDIEVVYGGVKYAFSDGIGKISSEFARKVASKCGCNGVTPS 559

Query: 1910 AFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLL 1731
            AFQIRYGGYKGVVAVDP SS KLSLR SM KY+S+N KLDVL++SK+QPCFLNRQ+I+LL
Sbjct: 560  AFQIRYGGYKGVVAVDPTSSFKLSLRKSMCKYESDNIKLDVLAYSKFQPCFLNRQLISLL 619

Query: 1730 STLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGE 1551
            STLGV+D VF  KQ +AV QLD IL DPLRAQEALDLMSPGEN+N+LKE+L CGYKPD E
Sbjct: 620  STLGVEDQVFLKKQSKAVQQLDAILTDPLRAQEALDLMSPGENTNVLKELLMCGYKPDTE 679

Query: 1550 PFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFY 1371
            P+LSMMLQTFR+SKLL+LR K+RIF+P  R MMGCLDET  LEYGQVFVQFSG+ R   +
Sbjct: 680  PYLSMMLQTFRASKLLELRTKSRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGS-RYRQF 738

Query: 1370 EESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGM 1191
             +S M   N  T   ++V G+VVVAKNPCLHPGDVRVL+A++V  LHHMVDCVVFP +G 
Sbjct: 739  GDSPMLGGN-GTKQRFIVTGSVVVAKNPCLHPGDVRVLRAVNVSELHHMVDCVVFPQKGS 797

Query: 1190 RPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNY 1011
            RPHPNECSGSDLDGDIYFVCWD +LIP  Q+ PMDY+PAP+   D DVTIEEV+EYF NY
Sbjct: 798  RPHPNECSGSDLDGDIYFVCWDPELIPCHQIEPMDYTPAPSMLKDDDVTIEEVQEYFANY 857

Query: 1010 IVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEY 831
            IVNDSLGIIANAHTVFADKE   A+S PC+ELARLFSIAVDFPKTG+PA IPPHL VKEY
Sbjct: 858  IVNDSLGIIANAHTVFADKEYGKAMSSPCVELARLFSIAVDFPKTGIPAVIPPHLHVKEY 917

Query: 830  PDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYV 651
            PDFM+KPDK +YES  +IGKLFREVKDIAP+T+SIRSFT EVAR+SYDPDMEVDGF DY+
Sbjct: 918  PDFMEKPDKQTYESQNVIGKLFREVKDIAPNTSSIRSFTSEVARKSYDPDMEVDGFEDYL 977

Query: 650  DEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNE 471
            D+A+ YK  YD KLGNL++YYGIKTEAEILSG I++MSK+F +R+D E+I+ AVR+LR E
Sbjct: 978  DDAYYYKNSYDYKLGNLLDYYGIKTEAEILSGSILRMSKSFTKRRDAESINMAVRALRKE 1037

Query: 470  VRSWFKKGN-----ESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLI 306
             R+WF +       ESDD YAKASAWYHVTYHP +WGSYN G+ RDHY+SF WCVYD+L+
Sbjct: 1038 ARNWFNEKRSGGDFESDDLYAKASAWYHVTYHPSYWGSYNEGMNRDHYLSFAWCVYDRLV 1097

Query: 305  KIKKDNS--RRASDMASLEREFSRRLNL 228
            +IK+D +  RR   ++SLE  F   L L
Sbjct: 1098 EIKEDKASRRRHLQLSSLEEHFCYGLRL 1125


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score = 1471 bits (3808), Expect = 0.0
 Identities = 721/1038 (69%), Positives = 851/1038 (81%), Gaps = 5/1038 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+Q  R +V  M+ +TLNFGCQ S +KF+VL   E VS+KFG G+KK  F L   S +Y
Sbjct: 84   DIVQL-RAYVDHMDGITLNFGCQISEDKFAVLGSTE-VSIKFGIGLKKFFFFLSSGSADY 141

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            +LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRIYK+L +S +S+F+ETPDDQW+RTTD
Sbjct: 142  KLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDDQWVRTTD 201

Query: 2963 FTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPF--AANLALVPIVH 2790
            FTPS IG SS LCLQ   G+ LPNFQ+SF  Y E ++   L+TG  F  +   ALVP V 
Sbjct: 202  FTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQ 261

Query: 2789 PPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKEC 2610
            PP G+ +PY+ILFK+  LVQ GC+PGP L+  FFRLVDP+R ++  IE ALEKLYY+KEC
Sbjct: 262  PPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKEC 321

Query: 2609 CYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVL 2430
            CYDPV WL EQY+ Y   R+ P SP+I+LDDGLVYV RV +TP +VYF GPEVNVSNRVL
Sbjct: 322  CYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVL 381

Query: 2429 RHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNK 2250
            R+Y + +DNFLRVSFVDEEW+K+YST+L PK + G+   RT +YERILSTL++G +IG+K
Sbjct: 382  RNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGN-GIRTNIYERILSTLRKGFVIGDK 440

Query: 2249 KFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTE 2070
            KF+FLAFSSSQLRDNS+WMFA   GL  + IR WMGDF  I+NVAKYAARLGQSF SS E
Sbjct: 441  KFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRE 500

Query: 2069 TLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYG 1890
            TLSV   E+E I D++   +GT YVFSDGIGKISADFARRVA KCG +  TPSAFQIRYG
Sbjct: 501  TLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYG 557

Query: 1889 GYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKD 1710
            GYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL WSKYQPC+LNRQ++TLLSTLGVKD
Sbjct: 558  GYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKD 617

Query: 1709 YVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMML 1530
             V + KQ+EAV QLD IL D L+AQEAL+LMSPGEN+NILK ML CGY PD EPFLSMML
Sbjct: 618  DVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMML 677

Query: 1529 QTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNY 1350
            QTFR+SKLLDLR ++RIF+P  R MMGCLDE+  LEYGQVFVQF+GAG   F E+ +   
Sbjct: 678  QTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFN 737

Query: 1349 DNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNEC 1170
            ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+DV ALHHMVDCVVFP +G RPHPNEC
Sbjct: 738  NSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 797

Query: 1169 SGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLG 990
            SGSDLDGDIYFVCWD D+IPPRQV  M+Y PAP+ +LDH+VTIEEVEEYFTNYIVNDSLG
Sbjct: 798  SGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLG 857

Query: 989  IIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDK- 813
            IIANAH VFAD+E +MA+S+PC +LA LFSIAVDFPKTGVPAEIP  LR KEYPDFMDK 
Sbjct: 858  IIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKP 917

Query: 812  PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEY 633
            PDK +Y S R+IGKLFR+VKD AP  +SI  FT++VARRSYD D+EVDGF DY+DEAF+Y
Sbjct: 918  PDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDY 977

Query: 632  KTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFK 453
            KTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFDRRKD EAIS AVR+LR E R+WFK
Sbjct: 978  KTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARTWFK 1037

Query: 452  KGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR-- 279
            + N+ DD   KASAWYHVTYHP +WG YN GLKRDH+ISFPWCVYD+LI+IKK+ +R   
Sbjct: 1038 RRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRP 1097

Query: 278  ASDMASLEREFSRRLNLR 225
              +++SL  + S +L L+
Sbjct: 1098 VLNLSSLRAQLSHKLVLK 1115


>ref|XP_006366109.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2
            [Solanum tuberosum]
          Length = 1115

 Score = 1469 bits (3802), Expect = 0.0
 Identities = 719/1030 (69%), Positives = 846/1030 (82%), Gaps = 5/1030 (0%)
 Frame = -1

Query: 3299 FVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYEN 3120
            +V  M+ +TLNFGCQ S +KF+VL   E VS+KFG G+KK  F L   S +Y+LQLSYEN
Sbjct: 91   YVDHMDGITLNFGCQISDDKFAVLGSTE-VSIKFGIGLKKFFFFLSSGSADYKLQLSYEN 149

Query: 3119 IWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQ 2940
            IWQ+VL+ P+GQ A+ LLIQLFGAPRIYK+L +S +S+F+ETPDDQW+RTTDF PS IG 
Sbjct: 150  IWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDDQWVRTTDFAPSWIGL 209

Query: 2939 SSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPF--AANLALVPIVHPPRGLELP 2766
            SS LCLQ   G+ LPNFQ+SF  Y E ++   L+TG  F  +   ALVP V PP G+ +P
Sbjct: 210  SSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIP 269

Query: 2765 YRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWL 2586
            Y+ILFK+  LVQ GC+PGP L+  FFRLVDP+R ++  IE ALEKLYY+KECCYDPV WL
Sbjct: 270  YKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWL 329

Query: 2585 NEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVD 2406
             EQY+ Y   R+ P SP+I+LDDGLVYV RV +TP +VYF GPEVNVSNRVLR+Y + +D
Sbjct: 330  TEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDID 389

Query: 2405 NFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFS 2226
            NFLRVSFVDEEW+K+YSTDL PK + G+   RT +YERILSTL++G +IG+KKF+FLAFS
Sbjct: 390  NFLRVSFVDEEWEKLYSTDLLPKASTGN-GIRTNIYERILSTLRKGFVIGDKKFEFLAFS 448

Query: 2225 SSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGERE 2046
            SSQLRDNS+WMFA   GL A  IR WMGDF  I+NVAKYAARLGQSF SSTETLSV   E
Sbjct: 449  SSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHE 508

Query: 2045 VEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAV 1866
            +E I D++   +GT YVFSDGIGKISADFARRVA KCG +  TPSAFQIRYGGYKGVVAV
Sbjct: 509  IEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQH-TPSAFQIRYGGYKGVVAV 565

Query: 1865 DPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQR 1686
            DP SS+KLSLR SM KY+S+N KLDVL WSKYQPC+LNRQ++TLLSTLGVKD V + KQ+
Sbjct: 566  DPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQK 625

Query: 1685 EAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKL 1506
            EAV QLD IL D L+AQEAL+LMSPGEN+NILK ML CGY PD EPFLSMMLQTFR+SKL
Sbjct: 626  EAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 685

Query: 1505 LDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCN 1326
            LDLR K+RIF+P  R MMGCLDE+  LEYGQVFVQF+G+G   F E+ +   ++ ST+CN
Sbjct: 686  LDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCN 745

Query: 1325 YVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGD 1146
            ++++GNVVVAKNPCLHPGD+RVL+A+DV ALHHMVDCVVFP +G RPHPNECSGSDLDGD
Sbjct: 746  FILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 805

Query: 1145 IYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTV 966
            IYFVCWD D+IPPRQV  M+Y PAP+ +LDHDVTIEEVEEYFTNYIVNDSLGIIANAH V
Sbjct: 806  IYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVV 865

Query: 965  FADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYES 789
            FAD+E +MA+S+PC +LA L SIAVDFPKTGVPAEIPP LR KEYPDFMDK PDK +Y S
Sbjct: 866  FADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYIS 925

Query: 788  TRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKL 609
             R+IGKL+R+VKD AP  +S   FT++VARRSYD D+EVDGF DY+DEAF+YKTEYDNKL
Sbjct: 926  ERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKL 985

Query: 608  GNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKKGNESDDP 429
            GNLM+YYGIKTEAEILSGGIMK SKTFDRRKD EAIS AVR+LR E R+WFK+ N+ DD 
Sbjct: 986  GNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDIDDM 1045

Query: 428  YAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRR--ASDMASLE 255
              KASAWYHVTYHP +WG YN GLKRDH+ISFPWCVYD+LI+IKK+ +R     +++SL 
Sbjct: 1046 LPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSLR 1105

Query: 254  REFSRRLNLR 225
             + SR+L L+
Sbjct: 1106 AQLSRKLVLK 1115


>ref|XP_011024314.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X2 [Populus
            euphratica]
          Length = 1132

 Score = 1467 bits (3798), Expect = 0.0
 Identities = 722/1048 (68%), Positives = 852/1048 (81%), Gaps = 16/1048 (1%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DII  PR+ +H ME VTL+FG QTS+EKFS +W   +VSV FG GM+K+HF L HN  EY
Sbjct: 85   DIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEY 144

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKK--------LNDSVHSYFRETPD 2988
            +L L +ENIWQI L+ P GQT K LLIQL+GAPRIY++          D + +YFR+ PD
Sbjct: 145  KLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYEREVPSSLNLFEDPLLNYFRDIPD 204

Query: 2987 DQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANL 2811
            +QW+RTTDFTPSC IG SS LCL+LP  ++LPNF ++F +YKE++  F LE+G  F+ N 
Sbjct: 205  EQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFNENFFYYKENEGTFVLESGSTFSRNP 264

Query: 2810 ALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEK 2631
             LVPIV P  G+ LPY ILF+V  LVQ GCL G  LD  F+RLVDP R  +R IEHALEK
Sbjct: 265  DLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEHALEK 324

Query: 2630 LYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEV 2451
            LY++KECCY+P  W NEQY KY T    P SP +SLD GLVYV++VQITP +V+F GPEV
Sbjct: 325  LYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEV 384

Query: 2450 NVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKE 2271
            N+SNRVLR Y + +DNFLRVSFVDEE +K++STD+SP+ ++ +E +RT +Y RILSTL+ 
Sbjct: 385  NISNRVLRQYLEEIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLRN 444

Query: 2270 GIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQ 2091
            GI+IG+KKF+FLAFSSSQLR+NS WMFA   GL A  IRRWMG F  IRNVA+YAARLGQ
Sbjct: 445  GIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRRWMGSFHQIRNVARYAARLGQ 504

Query: 2090 SFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPS 1911
            SFSSSTETLSV   E+E I DIE  R GT+Y+FSDGIGKISA+FAR+VAIKCG K  TPS
Sbjct: 505  SFSSSTETLSVSRHEIEIISDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPS 564

Query: 1910 AFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLL 1731
            AFQIRY GYKGVVAVDP S+ KLSLR SM KY+SENTKLDVL+ SKYQPCFLNRQ+ITLL
Sbjct: 565  AFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYESENTKLDVLAHSKYQPCFLNRQLITLL 624

Query: 1730 STLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGE 1551
            STLGV D+ F+ KQREAV QLD IL DPLRAQEAL LMSPGEN+NILKEML CGY+PD E
Sbjct: 625  STLGVPDHHFERKQREAVDQLDAILTDPLRAQEALVLMSPGENTNILKEMLLCGYQPDAE 684

Query: 1550 PFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFY 1371
            PFLSMMLQTFR+SKLL+LR K RIF+P  R MMGCLDET  LE+GQVFVQFSG+     Y
Sbjct: 685  PFLSMMLQTFRASKLLELRTKTRIFIPNGRLMMGCLDETRTLEHGQVFVQFSGSRFRNLY 744

Query: 1370 EESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGM 1191
            + S++  +     C Y++EG+VVVAKNPCLHPGDVR+LKA+DV ALHHMVDCVVFP +G 
Sbjct: 745  DSSDVFSERGRGQC-YLIEGSVVVAKNPCLHPGDVRILKAVDVPALHHMVDCVVFPQKGP 803

Query: 1190 RPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNY 1011
            RPHPN+CSGSDLDGDIYFVCWD +LIP +Q+SPMDY+P PT +LDHDVTIEEVEEYFTNY
Sbjct: 804  RPHPNQCSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPTLQLDHDVTIEEVEEYFTNY 863

Query: 1010 IVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEY 831
            IVNDSLGIIANAHT FADKE+  A+SEPCLELAR FSIAVDFPKTGVPAEIP +LRV+EY
Sbjct: 864  IVNDSLGIIANAHTAFADKESLKAMSEPCLELARKFSIAVDFPKTGVPAEIPSNLRVREY 923

Query: 830  PDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYV 651
            PDFM+KPDK SYES  +IGKLFREVKDIAP T+SIRSFT +VAR+ YDPDMEVDGF DY+
Sbjct: 924  PDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYI 983

Query: 650  DEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNE 471
            D+AF YK+ YD KLGNLMEYYGIKTEAE+LSG  MKMSK+F +++D EAI  AVRSLR E
Sbjct: 984  DDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLRKE 1043

Query: 470  VRSWF-KKG----NESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLI 306
             RSWF +KG    +++DD  AKASAWYHVTYH ++WG YN G+ RDH++SFPWC+YDKLI
Sbjct: 1044 ARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCLYDKLI 1103

Query: 305  KIKKDNS--RRASDMASLEREFSRRLNL 228
            +IKK+++  RR+  + S+ER+FSR L+L
Sbjct: 1104 QIKKNSARIRRSRILHSVERQFSRGLHL 1131


>ref|XP_015160223.1| PREDICTED: probable RNA-dependent RNA polymerase 1 isoform X2
            [Solanum tuberosum]
          Length = 1115

 Score = 1466 bits (3796), Expect = 0.0
 Identities = 721/1038 (69%), Positives = 849/1038 (81%), Gaps = 5/1038 (0%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DI+Q  R +V  M+ +TLNFGCQ S +KF+VL   E VS+KFG G+KK  F L   S +Y
Sbjct: 84   DIVQL-RAYVDHMDGITLNFGCQISDDKFAVLGSTE-VSIKFGIGLKKFFFFLSSGSADY 141

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTTD 2964
            +LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRIYK+L +S +S+F+ETPDDQW+RTTD
Sbjct: 142  KLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRIYKRLENSCYSFFKETPDDQWVRTTD 201

Query: 2963 FTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPF--AANLALVPIVH 2790
            F PS IG SS LCLQ   G+ LPNFQ+SF  Y E ++   L+TG  F  +   ALVP V 
Sbjct: 202  FAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQ 261

Query: 2789 PPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKEC 2610
            PP G+ +PY+ILFK+  LVQ GC+PGP L+ NFFRLVDP+R ++  IE ALEKLYY+KEC
Sbjct: 262  PPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQRRNVACIEQALEKLYYLKEC 321

Query: 2609 CYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVL 2430
            CYDPV WL EQY+ Y   R+ P SP+I+LDDGLVYV RV +TP +VYF GPEVNVSNRVL
Sbjct: 322  CYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVL 381

Query: 2429 RHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNK 2250
            R+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G+   RT +Y RILSTL++G +IG+K
Sbjct: 382  RNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGN-GIRTNIYVRILSTLQKGFVIGDK 440

Query: 2249 KFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTE 2070
            KF+FLAFSSSQLRDNS+WMFA   GL A  IR WMGDF  I+NVAKYAARLGQSF SS E
Sbjct: 441  KFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKE 500

Query: 2069 TLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYG 1890
            TLSV   E+E I D++   +GT YVFSDGIGKISADFARRVA KCG +  TPSAFQIRYG
Sbjct: 501  TLSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQY-TPSAFQIRYG 557

Query: 1889 GYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKD 1710
            GYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL WSKYQPCFLNRQ++TLLSTLGVKD
Sbjct: 558  GYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKD 617

Query: 1709 YVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMML 1530
             V + KQ+EAV QLD IL D L+AQEAL+LMSPGEN+NILK ML CGY PD EPFLSMML
Sbjct: 618  DVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMML 677

Query: 1529 QTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNMNY 1350
            QTFR+SKLLDLR ++RIF+P  R MMGCLDE+  LEYGQVFVQF+G+G   F E+ +   
Sbjct: 678  QTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFN 737

Query: 1349 DNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNEC 1170
            ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+DV ALHHMVDCVVFP +G RPHPNEC
Sbjct: 738  NSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNEC 797

Query: 1169 SGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLG 990
            SGSDLDGDIYFVCWD D+IPPRQV  M+Y PAP+ +LDHDVTIEEVEEYFTNYIVNDSLG
Sbjct: 798  SGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLG 857

Query: 989  IIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDK- 813
            IIANAH VFAD+E +MA+S+PC +LA LFSIAVDFPKTGVPAEIP  LR KEYPDFMDK 
Sbjct: 858  IIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKP 917

Query: 812  PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEY 633
            PDK +Y S R+IGKL+R+VKD AP  +S   FT++VARRSYD D+EVDGF DY+DEAF+Y
Sbjct: 918  PDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDY 977

Query: 632  KTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFK 453
            KTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFDRRKD EAIS AVR+LR E R+WFK
Sbjct: 978  KTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFK 1037

Query: 452  KGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDN--SRR 279
            + N+ DD   KASAWYHVTYHP +WG YN GLKRDH+ISFPWCVYD+LI+IKK+   +R 
Sbjct: 1038 RRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKALNRP 1097

Query: 278  ASDMASLEREFSRRLNLR 225
              +++SL  + S +L L+
Sbjct: 1098 VLNLSSLRAQLSHKLVLK 1115


>ref|XP_011024307.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Populus
            euphratica]
          Length = 1132

 Score = 1466 bits (3795), Expect = 0.0
 Identities = 722/1048 (68%), Positives = 851/1048 (81%), Gaps = 16/1048 (1%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DII  PR+ +H ME VTL+FG QTS+EKFS +W   +VSV FG GM+K+HF L HN  EY
Sbjct: 85   DIIPQPRSSLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEY 144

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKK--------LNDSVHSYFRETPD 2988
            +L L +ENIWQI L+ P GQT K LLIQL+GAPRIY++          D + +YFR+ PD
Sbjct: 145  KLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYEREVPSSLNLFEDPLLNYFRDIPD 204

Query: 2987 DQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANL 2811
            +QW+RTTDFTPSC IG SS LCL+LP  ++LPNF ++F +YKE++  F LE+G  F+ N 
Sbjct: 205  EQWVRTTDFTPSCSIGHSSSLCLELPSHLQLPNFNENFFYYKENEGTFVLESGSTFSRNP 264

Query: 2810 ALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEK 2631
             LVPIV P  G+ LPY ILF+V  LVQ GCL G  LD  F+RLVDP R  +R IEHALEK
Sbjct: 265  DLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEHALEK 324

Query: 2630 LYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEV 2451
            LY++KECCY+P  W NEQY KY T    P SP +SLD GLVYV++VQITP +V+F GPEV
Sbjct: 325  LYHLKECCYEPSKWFNEQYRKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEV 384

Query: 2450 NVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKE 2271
            N+SNRVLR Y + +DNFLRVSFVDEE +K++STD+SP+ ++ +E +RT +Y RILSTL+ 
Sbjct: 385  NISNRVLRQYLEEIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLRN 444

Query: 2270 GIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQ 2091
            GI+IG+KKF+FLAFSSSQLR+NS WMFA   GL A  IRRWMG F  IRNVA+YAARLGQ
Sbjct: 445  GIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRRWMGSFHQIRNVARYAARLGQ 504

Query: 2090 SFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPS 1911
            SFSSSTETLSV   E+E I DIE  R GT+Y+FSDGIGKISA+FAR+VAIKCG K  TPS
Sbjct: 505  SFSSSTETLSVSRHEIEIISDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPS 564

Query: 1910 AFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLL 1731
            AFQIRY GYKGVVAVDP S+ KLSLR SM KY+SENTKLDVL+ SKYQPCFLNRQ+ITLL
Sbjct: 565  AFQIRYAGYKGVVAVDPTSTKKLSLRMSMFKYESENTKLDVLAHSKYQPCFLNRQLITLL 624

Query: 1730 STLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGE 1551
            STLGV D+ F+ KQREAV QLD IL DPLRAQEAL LMSPGEN+NILKEML CGY+PD E
Sbjct: 625  STLGVPDHHFERKQREAVDQLDAILTDPLRAQEALVLMSPGENTNILKEMLLCGYQPDAE 684

Query: 1550 PFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFY 1371
            PFLSMMLQTFR+SKLL+LR K RIF+P  R MMGCLDET  LE+GQVFVQFSG+     Y
Sbjct: 685  PFLSMMLQTFRASKLLELRTKTRIFIPNGRLMMGCLDETRTLEHGQVFVQFSGSRFRNLY 744

Query: 1370 EESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGM 1191
            + S++  +     C Y++EG+VVVAKNPCLHPGDVR+LKA+DV ALHHMVDCVVFP +G 
Sbjct: 745  DSSDVFSERGRGQC-YLIEGSVVVAKNPCLHPGDVRILKAVDVPALHHMVDCVVFPQKGP 803

Query: 1190 RPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNY 1011
            RPHP ECSGSDLDGDIYFVCWD +LIP +Q+SPMDY+P PT +LDHDVTIEEVEEYFTNY
Sbjct: 804  RPHPKECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPTLQLDHDVTIEEVEEYFTNY 863

Query: 1010 IVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEY 831
            IVNDSLGIIANAHT FADKE+  A+SEPCLELAR FSIAVDFPKTGVPAEIP +LRV+EY
Sbjct: 864  IVNDSLGIIANAHTAFADKESLKAMSEPCLELARKFSIAVDFPKTGVPAEIPSNLRVREY 923

Query: 830  PDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYV 651
            PDFM+KPDK SYES  +IGKLFREVKDIAP T+SIRSFT +VAR+ YDPDMEVDGF DY+
Sbjct: 924  PDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYI 983

Query: 650  DEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNE 471
            D+AF YK+ YD KLGNLMEYYGIKTEAE+LSG  MKMSK+F +++D EAI  AVRSLR E
Sbjct: 984  DDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLRKE 1043

Query: 470  VRSWF-KKG----NESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLI 306
             RSWF +KG    +++DD  AKASAWYHVTYH ++WG YN G+ RDH++SFPWC+YDKLI
Sbjct: 1044 ARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCLYDKLI 1103

Query: 305  KIKKDNS--RRASDMASLEREFSRRLNL 228
            +IKK+++  RR+  + S+ER+FSR L+L
Sbjct: 1104 QIKKNSARIRRSRILHSVERQFSRGLHL 1131


>ref|XP_002284914.1| PREDICTED: probable RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1462 bits (3786), Expect = 0.0
 Identities = 724/1042 (69%), Positives = 847/1042 (81%), Gaps = 9/1042 (0%)
 Frame = -1

Query: 3326 IDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVE 3147
            +DII  PR F+H M+++TL+FGCQ S E+F VLWKA +VSVKFG+G++K +F L H S E
Sbjct: 84   LDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEE 143

Query: 3146 YRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKKLNDSVHSYFRETPDDQWIRTT 2967
            Y+L+LSYENIWQI L +P GQ  K LLIQL GAP+IY+K    +  YF+E PDDQW+R  
Sbjct: 144  YKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEKDVPVLSYYFKEAPDDQWVREI 203

Query: 2966 DFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANLALVPIVH 2790
            DFTPSC IGQS  LCL+LPYG +LPNF+++F +YKE+   F LE+G  ++ NL LVPI+ 
Sbjct: 204  DFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILG 263

Query: 2789 PPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKEC 2610
            PP+G  LP++ILFK+  LVQ GCL GP LDT+FFRLVDP+RF I +IEHALEKLY++KEC
Sbjct: 264  PPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKEC 323

Query: 2609 CYDPVAWLNEQYEKYRTFREQP--NSPAISLDDGLVYVHRVQITPTRVYFSGPEVNVSNR 2436
            CY+PV WL+EQY   RT+ ++P   SPAISLD GLVYV RVQITP +VYF GPEVNVSNR
Sbjct: 324  CYEPVRWLSEQY---RTYVKKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNR 380

Query: 2435 VLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKEGIIIG 2256
            VLR+Y + +DNFLRVSF+DE  +K++ST +SP+++   E +RT +Y RILS L+ GI+IG
Sbjct: 381  VLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSK--EGRRTGVYRRILSILQNGIVIG 438

Query: 2255 NKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQSFSSS 2076
            +KKFDFLAFSSSQLRDNS WMFA   GL A  IR WMGDF  IRNVAKYAARLGQSFSSS
Sbjct: 439  DKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSS 498

Query: 2075 TETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPSAFQIR 1896
             ETL V + E+E I DIE  +  T YVFSDGIGKIS   A RVAIKCG KS+TPSAFQIR
Sbjct: 499  KETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIR 558

Query: 1895 YGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGV 1716
            YGGYKGVVAVDP SS KLSLR SM KY+S+NT LDVL+WSKYQP FLNRQ+ITLLSTLGV
Sbjct: 559  YGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGV 618

Query: 1715 KDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGEPFLSM 1536
            KD+VF+ KQR AV QLD IL DP+ AQEAL+LMSPGEN+N+LKEML CGYKPD EPFLSM
Sbjct: 619  KDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSM 678

Query: 1535 MLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFYEESNM 1356
            MLQTFR++KLL+LR K RIFVP  R MMGCLDET  LEYG+VFVQ SG G    + +S M
Sbjct: 679  MLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLM 738

Query: 1355 NYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPN 1176
               + S   N+++EG +VVAKNPCLHPGDVRVL A++V  LHHMVDCVVFP +G RPHPN
Sbjct: 739  FRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPN 798

Query: 1175 ECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDS 996
            ECSGSDLDGDIYFVCWD DLIPP+Q++PMDY+PAPT  LDHDV IEEVEEYFTNYIVNDS
Sbjct: 799  ECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDS 858

Query: 995  LGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMD 816
            LGIIANAHTVFADKE + A  +PC ELA+LFSIAVDFPKTGVPAEIP +LRVKEYPDFM+
Sbjct: 859  LGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFME 918

Query: 815  KPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFE 636
            K DK +YES  +IGKLFREVKDIAPH  +IRSFT++VAR+SYDPDMEV GF DYV +AF 
Sbjct: 919  KADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFY 978

Query: 635  YKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWF 456
            YK+EYD KLGNLM+YYGIKTE+EILSG IM+MSK+FDRRKD EAI  AV+SLR E R+WF
Sbjct: 979  YKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWF 1038

Query: 455  KK-----GNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIK-K 294
             K      +E+DD YAKASAWYHVTYHPD+WG YN G+ RDH++SFPWCVYDKLI  K K
Sbjct: 1039 NKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRK 1098

Query: 293  DNSRRASDMASLEREFSRRLNL 228
              S R+  ++SLER  S+ L L
Sbjct: 1099 KMSGRSLHLSSLERRLSQGLRL 1120


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1461 bits (3782), Expect = 0.0
 Identities = 717/1049 (68%), Positives = 851/1049 (81%), Gaps = 17/1049 (1%)
 Frame = -1

Query: 3323 DIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKAESVSVKFGTGMKKMHFVLCHNSVEY 3144
            DII  PR+F+H ME VTL+FG QTS+EKFS +W   +VSV FG GM+K+HF L HN  EY
Sbjct: 85   DIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEY 144

Query: 3143 RLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRIYKK--------LNDSVHSYFRETPD 2988
            +L L +ENIWQI L+ P GQT K LLIQL+GAPRIY++          D + +YFR+ PD
Sbjct: 145  KLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPD 204

Query: 2987 DQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYKESQDPFRLETGVPFAANL 2811
            +QW+RTTDFTPSC IG SS LCL+LP  ++LPNF ++F +YKE++  F LE+G+ F+ N 
Sbjct: 205  EQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNP 264

Query: 2810 ALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRLVDPKRFDIRYIEHALEK 2631
             LVPIV P  G+ LPY ILF+V  LVQ GCL G  LD  F+RLVDP R  +R IE+ALEK
Sbjct: 265  DLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSMLDDIFYRLVDPNRMPVRCIEYALEK 324

Query: 2630 LYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYVHRVQITPTRVYFSGPEV 2451
            LY++KECCY+P  W NEQY+KY T    P SP +SLD GLVYV++VQITP +V+F GPEV
Sbjct: 325  LYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEV 384

Query: 2450 NVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGDENKRTKLYERILSTLKE 2271
            NVSNRVLR YR+ +DNFLRVSFVDEE +K++STD+SP+ ++ +E +RT +Y RILSTL+ 
Sbjct: 385  NVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQN 444

Query: 2270 GIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMGDFRDIRNVAKYAARLGQ 2091
            GI+IG+KKF+FLAFSSSQLR+NS WMFA   GL A  IR WMG F  IRNVA+YAARLGQ
Sbjct: 445  GIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQ 504

Query: 2090 SFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISADFARRVAIKCGFKSATPS 1911
            SF SSTETLSV   E+E I DIE  R GT+Y+FSDGIGKISA+FAR+VAIKCG K  TPS
Sbjct: 505  SFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPS 564

Query: 1910 AFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLSWSKYQPCFLNRQIITLL 1731
            AFQIRY GYKGVVAVDP SS KLSLR SM KY+SENTKLDVL+ SKYQPCFLNRQ+ITLL
Sbjct: 565  AFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLL 624

Query: 1730 STLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGENSNILKEMLKCGYKPDGE 1551
            STLGV D+ F+ KQREAV QLD +L DPLRAQEAL+LMSPGEN+NILKEML CGY+PD E
Sbjct: 625  STLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAE 684

Query: 1550 PFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILEYGQVFVQFSGAGRGGFY 1371
            PFLSMMLQTFR+SKLL+LR K RIF+P  R MMGCLDET  LE+GQVFV+FSG+     Y
Sbjct: 685  PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLY 744

Query: 1370 EESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDVRALHHMVDCVVFPSRGM 1191
            + S+M  +     C Y+++G+VVVAKNPCLHPGD+R+LKA+DV ALHHMVDCVVFP +G 
Sbjct: 745  DSSDMFSERGRGQC-YLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGP 803

Query: 1190 RPHPNECSGSDLDGDIYFVCWDSDLIPPRQVSPMDYSPAPTSRLDHDVTIEEVEEYFTNY 1011
            RPHPNECSGSDLDGDIYFVCWD +LIP +Q+SPMDY+P P  +LDHDVTIEEVEEYFTNY
Sbjct: 804  RPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNY 863

Query: 1010 IVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFPKTGVPAEIPPHLRVKEY 831
            IVNDSLG+IANAHT  ADKE+  A+SEPC+ELAR FSIAVDFPKTGVPAEIP +LR +EY
Sbjct: 864  IVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREY 923

Query: 830  PDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVARRSYDPDMEVDGFNDYV 651
            PDFM+KPDK SYES  +IGKLFREVKDIAP T+SIRSFT +VAR+ YDPDMEVDGF DY+
Sbjct: 924  PDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYI 983

Query: 650  DEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDRRKDVEAISAAVRSLRNE 471
            D+AF YK+ YD KLGNLMEYYGIKTEAE+LSG  MKMSK+F +++D EAI  AVRSL+ E
Sbjct: 984  DDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKE 1043

Query: 470  VRSWF-KKG----NESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHYISFPWCVYDKLI 306
             RSWF +KG    +++DD  AKASAWYHVTYH ++WG YN G+ RDH++SFPWCVYDKLI
Sbjct: 1044 ARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLI 1103

Query: 305  KIKKDNS---RRASDMASLEREFSRRLNL 228
            +IK+ NS   RR+  + S+ER+FSR L+L
Sbjct: 1104 QIKRRNSARIRRSLILPSVERQFSRGLHL 1132