BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia27_contig00007069
         (668 letters)

Database: ./nr 
           84,704,028 sequences; 31,038,470,784 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotei...   344   e-113
gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposo...   274   6e-87
gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposo...   276   2e-86
gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposo...   268   1e-84
gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposo...   274   4e-84
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   275   3e-82
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   276   4e-82
gb|KYP64461.1| Retrovirus-related Pol polyprotein from transposo...   264   4e-82
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...   272   4e-81
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   273   5e-81
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            273   5e-81
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               268   2e-80
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   270   3e-80
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                268   6e-80
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     268   1e-79
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   268   2e-79
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   266   2e-79
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   268   2e-79
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   268   2e-79
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   267   3e-79

>ref|XP_012849888.1| PREDICTED: retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Erythranthe guttata]
          Length = 598

 Score =  344 bits (882), Expect = e-113
 Identities = 164/222 (73%), Positives = 189/222 (85%)
 Frame = +1

Query: 1   DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
           DSC+LGK + V FP  P PN S  +EILEY+HADVWGP SV T+GG+RYFLS+IDD+SRK
Sbjct: 179 DSCILGKQTHVLFPEYPSPNLSRCTEILEYIHADVWGPTSVPTYGGNRYFLSIIDDYSRK 238

Query: 181 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
           V+VFLLK KSDVFD FK WKTLIENQTGK+IK LRTDNG+EFCN  FDNLCA+SGI+RHK
Sbjct: 239 VFVFLLKQKSDVFDKFKTWKTLIENQTGKRIKTLRTDNGIEFCNLEFDNLCANSGIRRHK 298

Query: 361 TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
           +V +TPQQNGVAERMNRTLLERVRSML  SGL K FWGEA+LTA Y+INRSPS+PL+G +
Sbjct: 299 SVVHTPQQNGVAERMNRTLLERVRSMLTSSGLPKLFWGEAILTATYLINRSPSMPLNGDL 358

Query: 541 PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
           PE V+ GK++D SNL VFG +AF H K DKLEPR VKC+FLG
Sbjct: 359 PESVWCGKKVDLSNLHVFGYAAFVHHKGDKLEPRFVKCIFLG 400


>gb|KYP36391.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 498

 Score =  274 bits (700), Expect = 6e-87
 Identities = 132/222 (59%), Positives = 166/222 (74%)
 Frame = +1

Query: 1   DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
           + CVLGK  RVKF          SS   EY+HAD+WGP+ V T GG  YFL++IDDF+R+
Sbjct: 50  EHCVLGKSHRVKFGTGI----HVSSRPFEYVHADLWGPSRVKTLGGGSYFLTIIDDFTRR 105

Query: 181 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
           VW+++LK+K++ +  F+ W TLI+NQ   K+K+LRTDNGLEF ++ F   C + GIKRH+
Sbjct: 106 VWLYVLKDKTETYKKFRDWYTLIQNQLETKLKVLRTDNGLEFLSEQFAEFCRNQGIKRHR 165

Query: 361 TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
           TVP+TPQQNG+AERMNRT+LERVR ML  SGLSKKFWGEA  TAAY+INR PS  L+ K 
Sbjct: 166 TVPHTPQQNGLAERMNRTILERVRCMLLGSGLSKKFWGEAATTAAYLINRCPSSALNNKT 225

Query: 541 PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
           P   + GK +D+SNL+VFG  A+AH K  KLEPRAVKCVF+G
Sbjct: 226 PMEAWHGKPVDYSNLRVFGSLAYAHVKEGKLEPRAVKCVFIG 267


>gb|KYP48029.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 634

 Score =  276 bits (707), Expect = 2e-86
 Identities = 127/222 (57%), Positives = 170/222 (76%)
 Frame = +1

Query: 1   DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
           + CV+GK SR+KF  S      +S  +L+Y+H+D+WGP+   +HGG+RYFLS++DDFSRK
Sbjct: 115 EHCVMGKASRLKFSTST----HSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDFSRK 170

Query: 181 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
           VWV+ LK K++VFD FK+WK L+E QTG+ +K LRTDNGLEFC++ F   C ++G+ RHK
Sbjct: 171 VWVYFLKQKNEVFDRFKEWKVLVETQTGRNLKKLRTDNGLEFCDEKFSKFCRENGVARHK 230

Query: 361 TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
           TV  TPQ+NG+AER NRT+LERVR ML  +GL K FW EAV +A Y INR PS  L  K 
Sbjct: 231 TVRGTPQKNGLAERFNRTILERVRCMLNHAGLPKSFWVEAVSSAVYCINRCPSTALEFKT 290

Query: 541 PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
           P+ V++G+++D+S L+VFGC A+AH K DKLEPRA+K +F+G
Sbjct: 291 PQEVWSGRKVDYSELRVFGCIAYAHIKQDKLEPRALKFIFIG 332


>gb|KYP63308.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 516

 Score =  268 bits (686), Expect = 1e-84
 Identities = 123/218 (56%), Positives = 165/218 (75%)
 Frame = +1

Query: 13  LGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRKVWVF 192
           +GK SR+KF  S      +S  +L+Y+H+D+WGP+   +HGG+RYFLS++DDFSRKVWV+
Sbjct: 1   MGKASRLKFSTST----HSSGGVLDYVHSDLWGPSRTESHGGARYFLSIVDDFSRKVWVY 56

Query: 193 LLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHKTVPY 372
            LK K++VFD FK+WK L+E Q G+ +K LRTDNGLEFC++ F   C ++G+ RHKTV  
Sbjct: 57  FLKQKNEVFDRFKEWKVLVETQIGRNLKKLRTDNGLEFCDEKFSKFCRENGVARHKTVRG 116

Query: 373 TPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKIPEFV 552
           TPQ+NG+ ER NRT+LERVR ML  +GL K FW EAV +A Y INR PS  L  K P+ V
Sbjct: 117 TPQKNGLVERFNRTILERVRCMLNHAGLPKSFWAEAVSSAVYCINRCPSTALEFKTPQEV 176

Query: 553 FTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
           ++G+++D+S L+VFGC A+AH K DKLEPRA+K +F+G
Sbjct: 177 WSGRKVDYSELRVFGCIAYAHIKQDKLEPRALKFIFIG 214


>gb|KYP64673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 780

 Score =  274 bits (700), Expect = 4e-84
 Identities = 132/222 (59%), Positives = 166/222 (74%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + CVLGK  RVKF          SS   EY+HAD+WGP+ V T GG  YFL++IDDF+R+
Sbjct: 453  EHCVLGKSHRVKFGTGI----HVSSRPFEYVHADLWGPSRVKTLGGGSYFLTIIDDFTRR 508

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW+++LK+K++ +  F+ W TLI+NQ   K+K+LRTDNGLEF ++ F   C + GIKRH+
Sbjct: 509  VWLYVLKDKTETYKKFRDWYTLIQNQLETKLKVLRTDNGLEFLSEQFAEFCRNQGIKRHR 568

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TVP+TPQQNG+AERMNRT+LERVR ML  SGLSKKFWGEA  TAAY+INR PS  L+ K 
Sbjct: 569  TVPHTPQQNGLAERMNRTILERVRCMLLGSGLSKKFWGEAATTAAYLINRCPSSALNNKT 628

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P   + GK +D+SNL+VFG  A+AH K  KLEPRAVKCVF+G
Sbjct: 629  PMEAWHGKPVDYSNLRVFGSLAYAHVKEGKLEPRAVKCVFIG 670


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  275 bits (703), Expect = 3e-82
 Identities = 131/222 (59%), Positives = 169/222 (76%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + CV GK +RVKF  +    ++     L+Y+H+D+WGP+ V + GG+RYFL++IDD+SRK
Sbjct: 427  EHCVFGKATRVKFAKAIHETQNQ----LDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRK 482

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW++ LKNKS+ F  FK+WK L+E QT +K+K LRTDNGLEF +  F++LC   GI RH+
Sbjct: 483  VWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHR 542

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TV YTPQQNG+AERMNRT+LERVR ML+ SGLSK FW EA  TA ++INRSPS  L  K 
Sbjct: 543  TVRYTPQQNGLAERMNRTILERVRCMLSSSGLSKVFWAEAAETAVHLINRSPSSALQFKT 602

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P+  +TGK  D+ +LKVFGC+A+ H K DKLEPRAVKC+FLG
Sbjct: 603  PQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLG 644


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  276 bits (705), Expect = 4e-82
 Identities = 127/222 (57%), Positives = 168/222 (75%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            ++CV+GK  RVKF +        ++ +LEY+H+D+WGP+ V +H G RY+++ IDDFSRK
Sbjct: 781  ETCVMGKQRRVKFSMG----SHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRK 836

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VWV+ LK K +VF  FK+WKT++E +TGK +K LRTDNGLEFCN+ FD  C   GI RH+
Sbjct: 837  VWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHR 896

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TV +TPQQNGVAERMN+TL++R R M   +GLSKKFW EAV TAAY++NRSPS  +  K 
Sbjct: 897  TVRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKT 956

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P+ V++GK  ++S LK+FGC A+AH    KLEPRA+KC+FLG
Sbjct: 957  PQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLG 998


>gb|KYP64461.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 597

 Score =  264 bits (675), Expect = 4e-82
 Identities = 125/222 (56%), Positives = 166/222 (74%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            +SCV+GK  R+KF       K  S++IL+Y+H+D+WGP+ V +HG SRYF++ IDD+SRK
Sbjct: 370  ESCVMGKQRRLKFS----HGKYTSTKILQYVHSDLWGPSPVQSHGRSRYFVTFIDDYSRK 425

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VWV+ LK+K +VF  FK+WKT++E +TGK +K LRTDNGLEFCN LFD+ C ++ I RH 
Sbjct: 426  VWVYFLKSKDEVFGRFKEWKTMVEKRTGKLVKTLRTDNGLEFCNALFDDYCKEASIVRHL 485

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TV +TPQQNGV ERMN+TLL+R R M   +GLSK+F  EAV T AY++NRSPS  +  K 
Sbjct: 486  TVIHTPQQNGVVERMNQTLLQRARCMCLNAGLSKEFQAEAVNTIAYLVNRSPSTAIDLKT 545

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P+ V +GK   +  L++FGC A+AH    KLEPRA+KC+FLG
Sbjct: 546  PQEVSSGKPYYYFGLRIFGCPAYAHVNDGKLEPRAMKCIFLG 587


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score =  272 bits (695), Expect = 4e-81
 Identities = 122/222 (54%), Positives = 167/222 (75%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 430  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRK 485

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K   FDVFK+WKT++E QT +K+KILRTDNG++FC+++F + C   GI RH 
Sbjct: 486  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHY 545

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TVP+TPQQNGVAERMNRT++ + R ML+ +GL K+FW EAV TA Y+INRSPS  +  K 
Sbjct: 546  TVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKT 605

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   ++S+L+VFGC A+AH    KLEPRA+KC+FLG
Sbjct: 606  PIKVWSGSPANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLG 647


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  273 bits (697), Expect = 5e-81
 Identities = 122/222 (54%), Positives = 168/222 (75%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 676  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRK 731

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K   FDVFK+WKT++E QT +K+KILRTDNG+EFC+++F + C   GI RH 
Sbjct: 732  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 791

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TVP+TPQQNGVAERMNRT++ + R +L+ +GL K+FW EAV TA Y+INRSPS  +  K 
Sbjct: 792  TVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKT 851

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   ++S+L+VFGC+A+AH    KLEPRA+KC+FLG
Sbjct: 852  PIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLG 893


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  273 bits (697), Expect = 5e-81
 Identities = 122/222 (54%), Positives = 168/222 (75%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 469  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRK 524

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K   FDVFK+WKT++E QT +K+KILRTDNG+EFC+++F + C   GI RH 
Sbjct: 525  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHY 584

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TVP+TPQQNGVAERMNRT++ + R +L+ +GL K+FW EAV TA Y+INRSPS  +  K 
Sbjct: 585  TVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKT 644

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   ++S+L+VFGC+A+AH    KLEPRA+KC+FLG
Sbjct: 645  PIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLG 686


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  268 bits (686), Expect = 2e-80
 Identities = 120/222 (54%), Positives = 166/222 (74%)
 Frame = +1

Query: 1   DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
           + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY +++++D+SRK
Sbjct: 286 EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRK 341

Query: 181 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
           VW + LK+K   F+VFK+WKT++E QT +K+KILRTDNG+EFC+++F + C   GI RH 
Sbjct: 342 VWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHY 401

Query: 361 TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
           TVP+TPQQNGVAERMNRT++ + R ML+ +GL K+FW EAV TA Y+INRSP   +  K 
Sbjct: 402 TVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKT 461

Query: 541 PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
           P  V++G   ++S+LKVFGC+A+AH    KLEPR +KC+FLG
Sbjct: 462 PIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLG 503


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  270 bits (689), Expect = 3e-80
 Identities = 123/222 (55%), Positives = 164/222 (73%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + CV GKH RVKF  S    K     IL+Y+HAD+WGP+   + GG+RY L++IDD+SRK
Sbjct: 462  ERCVFGKHKRVKFNTSVHRTKG----ILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRK 517

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K D F  FK+WK +IE QT K++K+LRTDN  EFC+  FD+ C   GI RH 
Sbjct: 518  VWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHH 577

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            T+PYTPQQNGVAERMNRT++ + R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K 
Sbjct: 578  TIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKT 637

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  +++G   D+S L+VFGC+A+AH   +KLEPRA+KC+FLG
Sbjct: 638  PIEIWSGMPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLG 679


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  268 bits (686), Expect = 6e-80
 Identities = 120/222 (54%), Positives = 166/222 (74%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY +++++D+SRK
Sbjct: 454  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRK 509

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K   F+VFK+WKT++E QT +K+KILRTDNG+EFC+++F + C   GI RH 
Sbjct: 510  VWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHY 569

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TVP+TPQQNGVAERMNRT++ + R ML+ +GL K+FW EAV TA Y+INRSP   +  K 
Sbjct: 570  TVPHTPQQNGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKT 629

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   ++S+LKVFGC+A+AH    KLEPR +KC+FLG
Sbjct: 630  PIKVWSGSPANYSDLKVFGCTAYAHVDNGKLEPRTIKCIFLG 671


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  268 bits (684), Expect = 1e-79
 Identities = 120/222 (54%), Positives = 165/222 (74%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + C+ GKH RVKF  S    +     IL+Y+H+D+WGPA  T+ GG+RY ++++DD+SRK
Sbjct: 378  EHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRK 433

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K   FDVFK+WKT++E QT +K+KILRTDNG+E C+++F + C   GI RH 
Sbjct: 434  VWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHY 493

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            TVP+TPQQNGVAERMNRT++ + R ML+ + L K+FW EAV TA Y+INRSPS  +  K 
Sbjct: 494  TVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRSPSYAIDKKT 553

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   ++S+L+VFGC+A+AH    KLEPR +KC+FLG
Sbjct: 554  PIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLG 595


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  268 bits (685), Expect = 2e-79
 Identities = 124/222 (55%), Positives = 162/222 (72%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + C+ GKH RV+F  S    K      L+Y+HAD+WGP+   + GG+RY L+VIDD+SRK
Sbjct: 461  EHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTVIDDYSRK 516

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K D F  FK WK +IE QT +K+K+LRTDNG EFC+  F++ C   GI RH 
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHH 576

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            T+P+TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K 
Sbjct: 577  TIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKT 636

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   D+S LKVFGC+A+AH    KLEPRAVKC+FLG
Sbjct: 637  PIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLG 678


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1032

 Score =  266 bits (679), Expect = 2e-79
 Identities = 124/224 (55%), Positives = 164/224 (73%), Gaps = 2/224 (0%)
 Frame = +1

Query: 1   DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
           + CV GK  RV F  +    K      L+Y+H+D+WGP+ V ++GG RY +++IDDFSRK
Sbjct: 158 EHCVFGKQKRVSFSTATHRTKGT----LDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRK 213

Query: 181 VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
           VWV+ L++K++ F  FK+WKTL+E QTGKK+K LRTDNGLEFC   F+  CA+ GI RHK
Sbjct: 214 VWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHK 273

Query: 361 TVPYTPQQNGVAERMNRTLLERVRSMLACSGL--SKKFWGEAVLTAAYVINRSPSVPLSG 534
           T+P  PQQNGVAER+NRT+LER R ML+ +GL   ++ W EA  TA Y+INRSP   L+ 
Sbjct: 274 TIPGKPQQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLINRSPHSSLNF 333

Query: 535 KIPEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
           KIPE +++G  ID+SNL++FGC A+AH    KL PRA+KC+FLG
Sbjct: 334 KIPEEIWSGNPIDYSNLRIFGCPAYAHVNDGKLAPRAIKCIFLG 377


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  268 bits (684), Expect = 2e-79
 Identities = 123/222 (55%), Positives = 162/222 (72%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + C+ GKH RV+F  S    K      L+Y+HAD+WGP+   + GG+RY L++IDD+SRK
Sbjct: 461  EHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDDYSRK 516

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K D F  FK WK +IE QT +K+K+LRTDNG EFC+  F++ C   GI RH 
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHH 576

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            T+P+TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K 
Sbjct: 577  TIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKT 636

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   D+S LKVFGC+A+AH    KLEPRAVKC+FLG
Sbjct: 637  PIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLG 678


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  268 bits (684), Expect = 2e-79
 Identities = 123/222 (55%), Positives = 162/222 (72%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + C+ GKH RV+F  S    K      L+Y+HAD+WGP+   + GG+RY L++IDD+SRK
Sbjct: 461  EHCIFGKHKRVQFNTSVHTTKGT----LDYVHADLWGPSKKPSLGGARYMLTIIDDYSRK 516

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K D F  FK WK +IE QT +K+K+LRTDNG EFC+  F++ C   GI RH 
Sbjct: 517  VWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHH 576

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            T+P+TPQQNGVAERMNRT++ R R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K 
Sbjct: 577  TIPHTPQQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKT 636

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   D+S LKVFGC+A+AH    KLEPRAVKC+FLG
Sbjct: 637  PIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLG 678


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  267 bits (683), Expect = 3e-79
 Identities = 124/222 (55%), Positives = 161/222 (72%)
 Frame = +1

Query: 1    DSCVLGKHSRVKFPVSPPPNKSASSEILEYLHADVWGPASVTTHGGSRYFLSVIDDFSRK 180
            + CV GKH RVKF  S    K     IL+Y+H D+WGP+     GG+RY L++IDD+SRK
Sbjct: 462  EHCVFGKHKRVKFNTSVHRTKG----ILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRK 517

Query: 181  VWVFLLKNKSDVFDVFKQWKTLIENQTGKKIKILRTDNGLEFCNQLFDNLCADSGIKRHK 360
            VW + LK+K D F  FK+WK  IE QT K++K+LRTDNG EFC+  FD+ C   GI RH 
Sbjct: 518  VWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHH 577

Query: 361  TVPYTPQQNGVAERMNRTLLERVRSMLACSGLSKKFWGEAVLTAAYVINRSPSVPLSGKI 540
            T+PYTPQQNGVAERMNRT++ + R ML+ + ++K+FW EA  TA Y+INRSPS+PL+ K 
Sbjct: 578  TIPYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRSPSIPLNKKT 637

Query: 541  PEFVFTGKEIDFSNLKVFGCSAFAHQKLDKLEPRAVKCVFLG 666
            P  V++G   D+S L+VFGC+A+AH    KLEPRA+KC+FLG
Sbjct: 638  PIEVWSGMPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLG 679