BLASTX nr result
ID: Rehmannia27_contig00003130
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia27_contig00003130
(3618 letters)
Database: ./nr
84,704,028 sequences; 31,038,470,784 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera] 473 0.0
emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera] 446 0.0
emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera] 450 0.0
ref|XP_007024187.1| Cysteine-rich RLK (RECEPTOR-like protein kin... 469 0.0
emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera] 448 0.0
gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposo... 457 0.0
gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposo... 434 0.0
gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposo... 447 0.0
gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposo... 464 0.0
gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposo... 438 0.0
gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposo... 436 0.0
gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposo... 443 0.0
gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposo... 456 0.0
gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposo... 432 0.0
ref|XP_013664987.1| PREDICTED: uncharacterized protein LOC106369... 434 0.0
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 423 0.0
gb|KYP42321.1| Copia protein [Cajanus cajan] 437 0.0
gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposo... 428 0.0
ref|XP_010532348.1| PREDICTED: uncharacterized protein LOC104808... 406 0.0
gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposo... 410 0.0
>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
Length = 1523
Score = 473 bits (1217), Expect(3) = 0.0
Identities = 231/420 (55%), Positives = 300/420 (71%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FLNGDL+ED+YM+LPPGF +GE + VCKLHKS+YGLKQASRQW KL+S L G
Sbjct: 1082 FLNGDLYEDVYMQLPPGFGRKGE-----HRVCKLHKSLYGLKQASRQWFLKLSSALKAAG 1136
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F QS SDYSLF R+ Q F LLVYVDD+++ +L+ I K + + FK++D+G LRY
Sbjct: 1137 FKQSWSDYSLFXRNTQGRFTTLLVYVDDVILAGNSLEDIIETKQFLASHFKLKDMGQLRY 1196
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLG+E+ARS +GI +CQRKY L++LED G LG KP VE + ++ L D + Y
Sbjct: 1197 FLGIEVARSKQGIVLCQRKYALELLEDAGFLGAKPSRFPVEQSLTLTRGDGAELKDASQY 1256
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+++RPD+ + VH+LSQFMD P H+ AAY++LRY+K + GQG+F PS
Sbjct: 1257 RRLVGRLIYLTITRPDLVYAVHILSQFMDTPRQPHLDAAYKVLRYVKQTPGQGIFLPSTG 1316
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
L+L AYCD+DWA C DTRRSTTG+CIF GN+ ISW++KKQ TVSRSSAEAEYR++A T
Sbjct: 1317 QLELTAYCDADWARCKDTRRSTTGYCIFFGNAPISWKTKKQGTVSRSSAEAEYRSMATTC 1376
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CE+ WLR LL D +FCDNQ+AIH+ N +FHERTKHIE+DCH VRE++ G
Sbjct: 1377 CEITWLRSLLADLNVNHAHAVKLFCDNQAAIHIASNPVFHERTKHIEMDCHVVREKVQRG 1436
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFSHLEGEYQKG*SCGSTCEGAW 1157
+++ +HI ++ Q ADL TK L S F LLSK+G+INI ++L G + GS G W
Sbjct: 1437 LVKTMHIRTQEQPADLFTKPLSSKQFSTLLSKLGVINIHTNLRGS-EVDVERGSNDSGIW 1495
Score = 281 bits (719), Expect(3) = 0.0
Identities = 152/385 (39%), Positives = 217/385 (56%), Gaps = 22/385 (5%)
Frame = -1
Query: 3504 SVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAK 3325
++LTA YLINRTP+P L K+P+E LF PNYSHLRVFGC C+ STH +KFDPR+
Sbjct: 714 AILTAAYLINRTPTPLLQGKTPFEKLFHKSPNYSHLRVFGCRCFVSTHPLRPSKFDPRSI 773
Query: 3324 PYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVP-----LPDV 3160
VF+GYP G KGYK+ +SR+V F E +FP+ ++ SP + LP
Sbjct: 774 ESVFIGYPHGQKGYKVYSLKDKKXLISRDVTFFETEFPYQNXLSTTSPSLDTFFPSLPQT 833
Query: 3159 PTSTDEXXXXXXXXXXXXXXMT------------NGHTLGHQDSPNISHSPPQLHSPQTP 3016
P D+ T N H+ H D P+ SPP L++
Sbjct: 834 PDIDDDHISFNHSGSNLQPSATSSVDXHPQPTLDNSHSSSHVDPPS---SPPSLNTSPPV 890
Query: 3015 NRHVSPVSDVSTHTPDLSPLHSXXXXXXXXXXPSYLRDYHCN--LLTQPPTARSLSSVC- 2845
SP + P +P + L+D+H L ++P S S V
Sbjct: 891 ISQPSPSQPRRSSRPTKTP--------------TTLQDFHIEAALPSRPVPPSSTSEVAH 936
Query: 2844 --TSHPITDHLTYSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENG 2671
T H ++ L+Y LS +K+F + I+L K+P ++ +A+ W++A+N+E+ L N
Sbjct: 937 SGTIHSLSQVLSYDRLSPMHKAFTVKITLAKEPRSFSQAVLDSRWREAMNTEIQALQANK 996
Query: 2670 TWSITTLPPGNRAIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKI 2491
TWS+ LP + IGCK+V+K K+ DG++++YKARLVAKG++Q EG DY+ETF+PV K+
Sbjct: 997 TWSLVPLPSHKKPIGCKWVYKIKYNPDGTIERYKARLVAKGFSQVEGIDYRETFAPVAKL 1056
Query: 2490 TTVRIFLSIAAMHHWHLHQLDVHNA 2416
TTVR+ LS+A++ WHLHQLDV+NA
Sbjct: 1057 TTVRVLLSLASIQGWHLHQLDVNNA 1081
Score = 70.1 bits (170), Expect(3) = 0.0
Identities = 28/40 (70%), Positives = 38/40 (95%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSVLSS 3497
TPQQNG+VERKH+H+LNVAR+L+FQS+LP FWGD++L++
Sbjct: 679 TPQQNGVVERKHRHLLNVARALLFQSHLPKPFWGDAILTA 718
>emb|CAN68148.1| hypothetical protein VITISV_035665 [Vitis vinifera]
Length = 1813
Score = 446 bits (1148), Expect(3) = 0.0
Identities = 214/394 (54%), Positives = 288/394 (73%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+G+L E++YM PPG +GE NLVC+L KSIYGLKQASR W T+ + + G
Sbjct: 1333 FLHGNLQEEVYMTPPPGLRRQGE-----NLVCRLRKSIYGLKQASRNWFSTFTATVKSAG 1387
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
++QSK+DYSLFT+ + F A+L+YVDDIL+ +L I+ +K + +F ++DLG L+Y
Sbjct: 1388 YIQSKADYSLFTKSQGNKFTAILIYVDDILLTGNDLHEIKMLKTHLLKRFFIKDLGELKY 1447
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLG+E +RS KGI + QRKY LDIL+DTG+ G KP +E N K + L DP+ Y
Sbjct: 1448 FLGIEFSRSKKGIFMSQRKYTLDILQDTGLTGVKPEKFPMEQNLKLTNEDGELLHDPSRY 1507
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+V+RPDI + V LSQFM+ P H AA R+LRY+KGS GQGLF PS
Sbjct: 1508 RRLVGRLIYLTVTRPDIVYSVRTLSQFMNTPRKPHWEAALRVLRYIKGSPGQGLFLPSEN 1567
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+L L A+CDSDW C +RRS +G+C+F+G+SLISW+SKKQ VSRSSAEAEYRA+A T
Sbjct: 1568 NLTLSAFCDSDWGGCRMSRRSVSGYCVFLGSSLISWKSKKQTNVSRSSAEAEYRAMANTC 1627
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
EL WLRY+L+D DKPA +FCDNQ+A+++ N +FHERTKHIE+DCH VRE++ +G
Sbjct: 1628 LELTWLRYILKDLKVELDKPAPLFCDNQAALYIAANPVFHERTKHIEIDCHIVREKLQAG 1687
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMG 1235
+++P ++S+K QLAD+ TK+L F+FL +K+G
Sbjct: 1688 VIRPCYVSTKMQLADVFTKALGREQFEFLCTKLG 1721
Score = 272 bits (695), Expect(3) = 0.0
Identities = 152/379 (40%), Positives = 219/379 (57%), Gaps = 17/379 (4%)
Frame = -1
Query: 3501 VLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAKP 3322
VLTAVYLINR P+P L+NKSP+E+L+ PP+ +HLRVFGC CY T+ + KFDPRA
Sbjct: 955 VLTAVYLINRIPTPLLSNKSPFEVLYNRPPSLTHLRVFGCECYV-TNVHPKQKFDPRASI 1013
Query: 3321 YVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPF-----AQKVNIPSPVVPLPDVP 3157
VFLGYP G KGYK+LD T I VSR+V F E+ FPF + + PS +PLP
Sbjct: 1014 CVFLGYPHGKKGYKVLDLQTQKISVSRDVFFRENIFPFHSSSSQSQQHSPSLPLPLPISF 1073
Query: 3156 TSTDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLH--------SPQTPNRHVS 3001
ST + +++ + + S N P H S +P+ S
Sbjct: 1074 DSTPQPISLPRFSPSSTPPLSHHNPVSSPPSSNTDVPEPLSHESVASPLPSSPSPSSLSS 1133
Query: 3000 PVSD--VSTHTPDLSPLHSXXXXXXXXXXP--SYLRDYHCNLLTQPPTARSLSSVCTSHP 2833
P S V ++T SP H ++ DY + + +S S T +P
Sbjct: 1134 PPSVPLVPSNTSAPSPTHEPPLRRSTRHIQPPAWHHDYVMSAQLNHSSTQSSSRQGTRYP 1193
Query: 2832 ITDHLTYSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITT 2653
++ HL++ S +++F ++ +P ++++A W+QA+++EL L N TW +
Sbjct: 1194 LSSHLSFFRFSPHHRAFLALLTAQTEPSSFEQADCDPRWRQAMSTELQALERNNTWEMVP 1253
Query: 2652 LPPGNRAIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIF 2473
LPPG++ IGC++V+K K+ DG++++YKARLVAKGYTQ G DYQETFSP K+TT+R
Sbjct: 1254 LPPGHKPIGCRWVYKIKYHSDGTIERYKARLVAKGYTQVAGIDYQETFSPTAKLTTLRCL 1313
Query: 2472 LSIAAMHHWHLHQLDVHNA 2416
L++AA +W++HQLDVHNA
Sbjct: 1314 LTVAASRNWYIHQLDVHNA 1332
Score = 72.4 bits (176), Expect(3) = 0.0
Identities = 31/40 (77%), Positives = 38/40 (95%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSVLSS 3497
TPQQNG+VERKH+HILNVARSLMFQSN+P +FWG+ VL++
Sbjct: 919 TPQQNGVVERKHRHILNVARSLMFQSNVPLEFWGECVLTA 958
>emb|CAN76546.1| hypothetical protein VITISV_010420 [Vitis vinifera]
Length = 1288
Score = 450 bits (1157), Expect(3) = 0.0
Identities = 223/400 (55%), Positives = 289/400 (72%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL+E++YMKLPPG+ +GE S N VC LHKS+YGLKQASRQW K ++ + +G
Sbjct: 909 FLHGDLNEEVYMKLPPGYNRKGESLPS-NXVCLLHKSLYGLKQASRQWFSKFSTAIMGLG 967
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F QS SD+SLF ++ F+A+LVYVDD+++ S N I +K + FK++DLG ++Y
Sbjct: 968 FSQSPSDHSLFIKNVDGLFIAJLVYVDDVIIASNNQGAIADLKSELNKLFKLKDLGDVKY 1027
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLEIA+SS GI V QRKYVLD+L D G LGCK ST +E N K S L D ++Y
Sbjct: 1028 FLGLEIAKSSTGICVSQRKYVLDLLSDFGYLGCKAASTPMEANVKLSMDEGVDLPDVSLY 1087
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL SQF+ +P H+HAA RILRYLKG+ G GLF+PS
Sbjct: 1088 RRL---------------------SQFISRPKLPHLHAAQRILRYLKGNPGMGLFFPSNS 1126
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+L+L AY DSDWA CPD+RRS TGFC+F+GNSL+SW+SKKQ VSRSSAEAEYRA+A TS
Sbjct: 1127 ELRLMAYTDSDWARCPDSRRSVTGFCVFLGNSLVSWKSKKQHIVSRSSAEAEYRAMANTS 1186
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CE+ WL LL+DFG PA++FCDNQSA+H+ +N +FHERTKHIE+DCH VR+++ SG
Sbjct: 1187 CEITWLLALLKDFGIDHSAPALLFCDNQSALHMAENPVFHERTKHIEIDCHLVRDKVQSG 1246
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFS 1217
+L+P+ +S++ QLAD LTK+L S+F+ L+ KMG+ NIFS
Sbjct: 1247 VLKPMFVSTEHQLADXLTKALHPSSFKLLIGKMGLKNIFS 1286
Score = 279 bits (713), Expect(3) = 0.0
Identities = 159/365 (43%), Positives = 208/365 (56%), Gaps = 3/365 (0%)
Frame = -1
Query: 3501 VLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAKP 3322
+LTAVYLINRTPSP+L NK+P+EIL P+YSHLRVFGCLCY ST ++RTKF PRAK
Sbjct: 600 ILTAVYLINRTPSPFLNNKTPFEILHDKLPDYSHLRVFGCLCYVSTLKANRTKFSPRAKA 659
Query: 3321 YVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVP---LPDVPTS 3151
VFLGYP G KGYK+LD T R++ + P + +I S + LP +
Sbjct: 660 AVFLGYPFGFKGYKLLDIET------RSISISRNTNPCSSP-DISSDLFHDRVLPCIAAD 712
Query: 3150 TDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVSTHTP 2971
D+ P + PP +P + VS
Sbjct: 713 NDQSSSVL---------------------PRVVSQPPLQVAPSSRPTRVSK--------- 742
Query: 2970 DLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNLSSSY 2791
PSYL+DYHC+L+ + S TSHPI L+Y LS SY
Sbjct: 743 ----------------QPSYLKDYHCSLINSVAHVETHS---TSHPIQHFLSYDKLSPSY 783
Query: 2790 KSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCKYVF 2611
K F+LS+S+ +P ++ +A E W+ A++ EL L EN T SI +LP G +GCK+V+
Sbjct: 784 KLFSLSVSIISEPSSFAKAAEIPEWRAAMDCELEALEENKTXSIVSLPVGKHPVGCKWVY 843
Query: 2610 KTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHLHQL 2431
K K K DG++++YKARLVAKGYTQREG DY +TFSPV K+ TV++ L+IAA+ WHL QL
Sbjct: 844 KXKHKXDGTIERYKARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGWHLSQL 903
Query: 2430 DVHNA 2416
DV+NA
Sbjct: 904 DVNNA 908
Score = 62.0 bits (149), Expect(3) = 0.0
Identities = 26/40 (65%), Positives = 34/40 (85%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSVLSS 3497
TPQQN +VERKHQHILNVAR+L+F S+LP +W D +L++
Sbjct: 564 TPQQNSVVERKHQHILNVARALLFXSSLPVCYWSDCILTA 603
>ref|XP_007024187.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
gi|508779553|gb|EOY26809.1| Cysteine-rich RLK
(RECEPTOR-like protein kinase) 8 [Theobroma cacao]
Length = 1255
Score = 469 bits (1206), Expect(3) = 0.0
Identities = 222/400 (55%), Positives = 302/400 (75%), Gaps = 2/400 (0%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FLNGDL E++YM +PPG+ I+GE ++ LVCKLHKS+YGLKQASR+WN K+TS + G
Sbjct: 852 FLNGDLKEEVYMDIPPGYEIQGEYPENVKLVCKLHKSLYGLKQASREWNAKITSLIIQYG 911
Query: 2236 FVQSKSDYSLFTRHNQDG-FVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLR 2060
F+QS +D SLFT +G F ALL+YVDDILVGS + +K + + FK++DLGT++
Sbjct: 912 FIQSNADRSLFTMKTNNGEFFALLLYVDDILVGSYSKQAADAMKLFLSSHFKLKDLGTVK 971
Query: 2059 YFLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTF-LSDPT 1883
YFLGLEIARS KGI + QRKY LD+LE+ G+LG KP+ST ++ NQK K L +
Sbjct: 972 YFLGLEIARSPKGISISQRKYTLDLLEEHGLLGAKPVSTPIDYNQKLVKAQDEEKLINSI 1031
Query: 1882 IYRRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPS 1703
YR+L+ KL+YL+ SRPDI + V +LSQFMDKP+ EHM+AA+R+L+YLKGS+GQG+ S
Sbjct: 1032 DYRQLVKKLLYLTFSRPDIAYAVQVLSQFMDKPSLEHMNAAHRVLKYLKGSLGQGILMKS 1091
Query: 1702 VPDLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQ 1523
+L + YCDSDWA CP++R+S T + +FIGNSL++W+ KKQ+ VSRSS EA+YRA+A
Sbjct: 1092 ESNLMIVGYCDSDWAGCPNSRKSITRYNMFIGNSLVTWKFKKQSVVSRSSEEAKYRAMAS 1151
Query: 1522 TSCELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIV 1343
SCE++WL++LL DFG +++ D+QS IH++KN +FHERTKHIE+DCHF+RE+++
Sbjct: 1152 ASCEIIWLKHLLADFGIEHKVAVVLYSDSQSTIHISKNPVFHERTKHIEMDCHFIREKVI 1211
Query: 1342 SGILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINI 1223
G ++PI+IS+ QLADL TK+L F LL+KM + NI
Sbjct: 1212 EGTIKPIYISTDLQLADLFTKALQPRQFHNLLNKMNVHNI 1251
Score = 256 bits (655), Expect(3) = 0.0
Identities = 148/375 (39%), Positives = 200/375 (53%), Gaps = 12/375 (3%)
Frame = -1
Query: 3504 SVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAK 3325
+V+TAV++INR P+ L NKS +E+L+K P+Y HLRVFG LC+ ST S HR K D RA
Sbjct: 487 AVMTAVHIINRVPTRLLKNKSLFELLYKRQPSYEHLRVFGSLCFVSTLSQHRKKLDQRAT 546
Query: 3324 PYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNI--PSPVVPL------ 3169
+FLGYP KGY++ D + I +SRN+ F E FPF K + P P
Sbjct: 547 KCIFLGYPNNTKGYRVYDLNANRIIISRNIVFHEGTFPFQSKQHTTWPEPFCQTLGMHTK 606
Query: 3168 --PDVPTSTDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNR-HVSP 2998
P + + N S P L + P +
Sbjct: 607 YSPQIDSKLPNFHCQDYIPADTYSSEPNTSAQTPSTSQINDFEPNSLDTVSMPTATNNEN 666
Query: 2997 VSDVSTHTPDLS-PLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDH 2821
V+ + H P+ + P+ Y+ YH ++ S S T+HPIT
Sbjct: 667 VTSSNEHDPNENLPVRKSTRHKHAP---KYMDAYHLDM-------PSKSHNVTAHPITKF 716
Query: 2820 LTYSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPG 2641
L+ NLS +YK+F S+S T +P TY +A HW+ A+++EL L +N TWSI P
Sbjct: 717 LSTKNLSPAYKTFTTSLSYTFEPSTYHQAASYSHWRDAMSAELKALQDNETWSIIPRPLN 776
Query: 2640 NRAIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIA 2461
+ IGCK+V+K K DG +++YKARLVAKGY Q GFDY+ETFSPV K TTVR+F +IA
Sbjct: 777 SHVIGCKWVYKVKLNADGQIERYKARLVAKGYNQIAGFDYKETFSPVAKQTTVRVFFAIA 836
Query: 2460 AMHHWHLHQLDVHNA 2416
+WHL QLDV+NA
Sbjct: 837 TAFNWHLTQLDVNNA 851
Score = 65.5 bits (158), Expect(3) = 0.0
Identities = 28/40 (70%), Positives = 37/40 (92%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSVLSS 3497
T QQNG+VERKHQHIL VAR+L+FQS+LP+ FWGD+V+++
Sbjct: 452 TLQQNGVVERKHQHILVVARALLFQSSLPTHFWGDAVMTA 491
>emb|CAN81016.1| hypothetical protein VITISV_025518 [Vitis vinifera]
Length = 1461
Score = 448 bits (1153), Expect(3) = 0.0
Identities = 209/398 (52%), Positives = 297/398 (74%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL E++YM+LP GF +GE +VC+L+KS+YGLKQASR W K ++ + G
Sbjct: 1064 FLHGDLLEEVYMQLPLGFRQQGETP----MVCRLNKSLYGLKQASRSWFRKFSATIQQDG 1119
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F QS++DYSLFT+ + + F A+L+YVDD+++ + ++I +K+++ +F+++DLG LRY
Sbjct: 1120 FHQSRADYSLFTKISGNSFTAVLIYVDDMIITGNDENVIAALKESLHTKFRIKDLGQLRY 1179
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLG+E+ARS+ GI + QRKY LDIL++ G+LG KP+ST +E N K T L +P+ Y
Sbjct: 1180 FLGIEVARSTDGISISQRKYTLDILDEAGLLGAKPLSTPMEENNKLLPTVGDLLKNPSTY 1239
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+++RP+I++ VH+LSQFM +P H+HA + +LRYLKG+ GQGL++P+
Sbjct: 1240 RRLVGQLIYLTITRPEISYSVHILSQFMQEPRKPHLHAVHHLLRYLKGAPGQGLYFPAKG 1299
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+L L+ +CD+DWA C TRRS TG+CIF+ + ISW++KKQ TVSRSS E+EYRA+A +
Sbjct: 1300 NLLLRGFCDADWARCSITRRSVTGYCIFLXGAXISWKTKKQTTVSRSSXESEYRAMASIT 1359
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CEL WLRYLL D +PA +FCD+++A+H+ N ++HERTKHIE+DCH VRERI SG
Sbjct: 1360 CELTWLRYLLDDLKVEHSQPAKLFCDSKAALHIAANPVYHERTKHIEIDCHVVRERIQSG 1419
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINI 1223
+ H+ S QLADL TK L SS F LLSK G+++I
Sbjct: 1420 AIVTAHVPSSCQLADLFTKPLNSSIFHSLLSKFGVLDI 1457
Score = 271 bits (694), Expect(3) = 0.0
Identities = 150/369 (40%), Positives = 215/369 (58%), Gaps = 6/369 (1%)
Frame = -1
Query: 3504 SVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAK 3325
S+ TA YLINR P+P L++KSPY++L P+Y HLR FGCLCYA T+ KFD RA+
Sbjct: 723 SIQTACYLINRLPTPLLSHKSPYQLLXNKLPSYHHLRTFGCLCYA-TNLLPTHKFDQRAR 781
Query: 3324 PYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPF---AQKVNIPSPVVPLPDV-- 3160
+F+GYP+G KGY++ D T + S +V F EH FPF Q+ V+PLP
Sbjct: 782 RCIFVGYPLGQKGYRVYDLXTNKFFSSXDVVFHEHIFPFHTNPQEEQHDVVVLPLPQTSY 841
Query: 3159 -PTSTDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVS 2983
P +T+ D P PP L S ++ + + D
Sbjct: 842 EPITTETTKPQA------------------DDQP-----PPLLSSLESTSNERTLXLDTI 878
Query: 2982 THTPDLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNL 2803
P + S +LR++H + +++S S T HP+T +++Y+ L
Sbjct: 879 VSPPPPTTRRSDRIKQPNV----HLRNFHLYHTAKVASSQSSSLSGTRHPLTRYISYAQL 934
Query: 2802 SSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGC 2623
S Y++F +I+ +P TY++A+ W++A+ +EL L +N TW++T LP G+R IGC
Sbjct: 935 SPKYRNFVCAITTLVEPTTYEQAVLDPKWQEAMAAELHALEQNHTWTLTPLPYGHRPIGC 994
Query: 2622 KYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWH 2443
K+V+K K+ DG+V++YKARLVAKG+TQREG DY+ETFSPV K+TTVR L+IAA+ HW
Sbjct: 995 KWVYKIKYNSDGTVERYKARLVAKGFTQREGIDYKETFSPVAKLTTVRCLLAIAAVRHWS 1054
Query: 2442 LHQLDVHNA 2416
LHQ+DV NA
Sbjct: 1055 LHQMDVQNA 1063
Score = 65.5 bits (158), Expect(3) = 0.0
Identities = 26/37 (70%), Positives = 34/37 (91%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
TPQQNG+VERKH+H+LNV R+L FQ+NLP +FWG+S+
Sbjct: 688 TPQQNGVVERKHRHLLNVGRALRFQANLPLKFWGESI 724
>gb|KYP34298.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1002
Score = 457 bits (1176), Expect(3) = 0.0
Identities = 226/404 (55%), Positives = 294/404 (72%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDLHE++YM PPG + N VCKL KS+YGLKQASRQWN KLTS L G
Sbjct: 599 FLHGDLHEEVYMTPPPGLTVSPH---QSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSG 655
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F QS +DYSLFT+ F A+LVYVDD+++ + I +K + +F ++DLG L+Y
Sbjct: 656 FKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKY 715
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLG+E+ARSS GI + QRKY LD++EDTG+L KP + ++ + K KT T L+DPT Y
Sbjct: 716 FLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQY 775
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+ +R DI+F V+ LSQFMD+PTD H AA RIL+Y+K + G+GLF+PS
Sbjct: 776 RRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSS 835
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
DL LK Y DSDWA+C DTRRS TGF F+G +LISW+SKKQATVS+SSAEAEYRALAQ++
Sbjct: 836 DLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQST 895
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CE WL YLL DFG P ++FCDNQSA+H+ N +FHERTK+IELDCH VRE++ G
Sbjct: 896 CEAQWLSYLLHDFGLHSFHPIVLFCDNQSALHIASNPVFHERTKNIELDCHIVREKLQVG 955
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFSHLEG 1205
++ + IS+ QLAD+ TK+L F+ ++ K+G+ +I S L G
Sbjct: 956 LIHLLPISTADQLADVFTKALSLRPFEQIIFKLGMFDIHSSLRG 999
Score = 265 bits (677), Expect(3) = 0.0
Identities = 153/362 (42%), Positives = 209/362 (57%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
++V AV+LINR PS +L NK PYEI++ + P+ + ++VFGCL YA+T +R KFDPR
Sbjct: 275 YAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRG 334
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVPLPDVPTST 3148
+ VFLG+ +KG + D ++ + ++SR+V++ EH FPF LP P
Sbjct: 335 RRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPF------------LPTSPLDL 382
Query: 3147 DEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVSTHTPD 2968
+ HQ I P L + TP SPVS V
Sbjct: 383 TQTISLPR----------------HQPPLPIDTDPTPLSTNTTPTS--SPVSVVP----- 419
Query: 2967 LSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNLSSSYK 2788
P PSYL DYH LLT T S + + I +H++YSNLS S K
Sbjct: 420 --PPPFVRKSTRPRKLPSYLHDYHHTLLT---THNSPTISQPLYSIHNHISYSNLSPSQK 474
Query: 2787 SFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCKYVFK 2608
+F+LSIS K+P +Y EAI+ + WK AI +ELT L +N TW +T LPP + +GCK+VFK
Sbjct: 475 AFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFK 534
Query: 2607 TKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHLHQLD 2428
KF DG+++++KARLVAKGYTQ E DY +TFSPVVK+TTVR L++A +WH+HQLD
Sbjct: 535 LKFNSDGTIERHKARLVAKGYTQTETLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLD 594
Query: 2427 VH 2422
V+
Sbjct: 595 VN 596
Score = 60.8 bits (146), Expect(3) = 0.0
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFW 3518
TPQQNGIVERKHQHI+ VAR+L+ QSNLP FW
Sbjct: 241 TPQQNGIVERKHQHIMTVARALVMQSNLPKSFW 273
>gb|KYP65734.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1013
Score = 434 bits (1116), Expect(3) = 0.0
Identities = 218/400 (54%), Positives = 284/400 (71%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDLHE++YM LPPG + +++ VCKLHKSIYGLKQASRQW KL+S L ++G
Sbjct: 607 FLHGDLHEEVYMTLPPGLSVPSS-SNTAPKVCKLHKSIYGLKQASRQWYSKLSSALISMG 665
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
+ S +D+SLF + + F ALLVYVDDI++ + I +K + FK++DLG LRY
Sbjct: 666 YSPSTADHSLFIKSSSSHFTALLVYVDDIILAGNDKPEIDFIKAQLHKCFKIKDLGNLRY 725
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLEIARS+KGI + QRKY L+ILED G L KP ST + K + +D T Y
Sbjct: 726 FLGLEIARSNKGILLNQRKYTLEILEDVGFLAAKPSSTPFNPSLKLHSDHGSPYNDETAY 785
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRLIG+L+YL+ +RPDI++ V LSQF+ KP D H AA RILRYLKGS G+GLFY S
Sbjct: 786 RRLIGRLLYLTTTRPDISYVVQQLSQFVSKPLDIHYQAATRILRYLKGSHGRGLFYSSSA 845
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
L+L A+ DSDWA+C +R+S TGFC+F+G+SLISWRSKKQ+T+SRSS+EAEYRALA +
Sbjct: 846 SLKLSAFADSDWASCSISRKSITGFCVFLGSSLISWRSKKQSTISRSSSEAEYRALASLT 905
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CEL WL YL D + P +FCDN+SAI+L N FHERTKHIE+DCH +RE+I S
Sbjct: 906 CELQWLHYLFNDLKTSLNFPTSVFCDNKSAIYLAHNPTFHERTKHIEIDCHVIREKIQSR 965
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFS 1217
+L + + S QLAD TK L +++F +SK+G+ ++ S
Sbjct: 966 LLHLLPVPSSSQLADAFTKPLHATSFNSFVSKLGLYDVHS 1005
Score = 286 bits (731), Expect(3) = 0.0
Identities = 162/368 (44%), Positives = 210/368 (57%), Gaps = 4/368 (1%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
F++ AV+LINR PSP L NK+PY+ L + PP HLR FGCL YAST +HRTKF PRA
Sbjct: 272 FAIQHAVHLINRIPSPLLDNKTPYQALHQRPPILVHLRSFGCLAYASTLQAHRTKFQPRA 331
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPF----AQKVNIPSPVVPLPDV 3160
K V LGY G+KGY + D +++ ++SRNV F E FPF + PSP
Sbjct: 332 KKSVLLGYKEGVKGYLLYDLHSHEFFMSRNVFFHEFTFPFHTPSQTSLTQPSPTPITIQT 391
Query: 3159 PTSTDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVST 2980
P S+ + H SP S S P P+ P++ +SP S
Sbjct: 392 PISSP--------------YDLDNHV---PPSPTSSTSIP----PEQPHQPLSPAPAPSR 430
Query: 2979 HTPDLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNLS 2800
H+ + PSYL+DYHC+LL S S + T H I+ LTY S
Sbjct: 431 HSTRMRQ------------PPSYLKDYHCSLLAPTGRINSFSGISTPHSISSTLTYDFCS 478
Query: 2799 SSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCK 2620
SYK F LS+S +P TY +A + D W A+ +EL L N TWSI LP G R IGCK
Sbjct: 479 PSYKQFCLSVSTNFEPHTYTQASKYDCWIMAMKTELAALDMNQTWSIVDLPSGKRPIGCK 538
Query: 2619 YVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHL 2440
+V+K K+ DGS+++YKARLVAKGY+Q EG DY +T+SPV K+TTVR+ L++ A+ W L
Sbjct: 539 WVYKIKYLSDGSIERYKARLVAKGYSQTEGLDYLDTYSPVAKLTTVRVLLALTAIKGWFL 598
Query: 2439 HQLDVHNA 2416
QLDV+NA
Sbjct: 599 EQLDVNNA 606
Score = 60.8 bits (146), Expect(3) = 0.0
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
TPQQNG+VERKHQHILN AR+L FQ++LP FW ++
Sbjct: 238 TPQQNGVVERKHQHILNTARALYFQASLPKNFWNFAI 274
>gb|KYP61022.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1316
Score = 447 bits (1151), Expect(3) = 0.0
Identities = 217/404 (53%), Positives = 293/404 (72%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL+E++YM+LPPG VC+L +S+YGLKQASRQW +L+SFL G
Sbjct: 916 FLHGDLNEEVYMQLPPGLT-----PSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHG 970
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
+V S SD+SLF + + A+L+YVDDI++ +L I + + F+++DLG L+Y
Sbjct: 971 YVPSPSDHSLFLKCSPATTTAILIYVDDIVLAGNDLTEIHHLTSLLHTTFQIKDLGNLKY 1030
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLE+AR+ GI +CQRKY+LD+L DTGML KP+ST ++ + S +S T L+D Y
Sbjct: 1031 FLGLEVARNHTGIHLCQRKYILDLLSDTGMLASKPVSTPMDYSMHLSASSGTPLTDTAAY 1090
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+ +RPDIT+ V LSQF+ PT H A +RILRYLKG+ G G+F
Sbjct: 1091 RRLVGRLIYLTNTRPDITYAVQQLSQFVSNPTTAHRQALFRILRYLKGTPGSGIFLSVNS 1150
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+QL+A+ DSDWA CPDTRRS TGF +++G+SLISW+SKKQ TVSRSS+EAEYRALA T+
Sbjct: 1151 SVQLRAFSDSDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTT 1210
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CEL WL YLL+DF P P+I++CDNQSA+ + N +FHERTKHIE+DCH VR+++ +G
Sbjct: 1211 CELQWLSYLLKDFHIDPISPSILYCDNQSALQIASNPVFHERTKHIEIDCHIVRDKVSTG 1270
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFSHLEG 1205
+L+ + +SS QLAD+LTK L F+ SK+G++NI S LEG
Sbjct: 1271 LLKLLPVSSSQQLADILTKPLSPFVFRSHCSKLGMLNIHSQLEG 1314
Score = 264 bits (675), Expect(3) = 0.0
Identities = 152/365 (41%), Positives = 207/365 (56%), Gaps = 1/365 (0%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
F+++ A +LIN P+P+L N SP+E L+ P + S L VFGCLCY+ST +SHRTK DPRA
Sbjct: 594 FALMHATFLINCIPTPFLHNISPFEKLYGHPCDISILCVFGCLCYSSTITSHRTKLDPRA 653
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVPLPDVPTST 3148
P +FLG+ KGY + + T+ + VSRNV F E FP K + PS P+P
Sbjct: 654 HPCIFLGFKPHTKGYLLFNLHTHGLLVSRNVLFHEDHFPSFTKPHSPSFSSPVPI----- 708
Query: 3147 DEXXXXXXXXXXXXXXMTNGHTLGHQDSPNI-SHSPPQLHSPQTPNRHVSPVSDVSTHTP 2971
+ D P S S + P T ++H SP + P
Sbjct: 709 ---------------------HYNYVDYPTFPSSSIVESSDPPTSDQHSSPPPLRRSTRP 747
Query: 2970 DLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNLSSSY 2791
P +YL+D+H T TA S + + HP+ L+Y LS S+
Sbjct: 748 RRPP--------------TYLQDFH-GAFTSTSTAHSSTGI--RHPLHSFLSYDLLSPSF 790
Query: 2790 KSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCKYVF 2611
+ SIS +P + EA +SD W +A++ E+ L N TW +TTLPP AIGC++V+
Sbjct: 791 HHYVFSISSVTEPKNFAEASKSDSWLKAMHEEIFALEANNTWVLTTLPPHKTAIGCRWVY 850
Query: 2610 KTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHLHQL 2431
K K K DGS+D+YKARLVAKGYTQ EG D+ +TFSPV K+TTVR+ LS+AA+++WHL QL
Sbjct: 851 KVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLLSLAAINNWHLKQL 910
Query: 2430 DVHNA 2416
DV+NA
Sbjct: 911 DVNNA 915
Score = 64.7 bits (156), Expect(3) = 0.0
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFW 3518
TPQQNGIVERKHQH+LNV RSL+FQ+NLPS FW
Sbjct: 560 TPQQNGIVERKHQHLLNVTRSLLFQANLPSIFW 592
>gb|KYP42564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1427
Score = 464 bits (1194), Expect(3) = 0.0
Identities = 225/400 (56%), Positives = 297/400 (74%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL ED+YM++P G I D N VCKL+KS+YGLKQASRQW KL+SFL ++
Sbjct: 1016 FLHGDLLEDVYMEIPQGLNI-----DKPNHVCKLNKSLYGLKQASRQWFAKLSSFLLSLH 1070
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
+ QS+ D+SLFT+H+ F +L+YVDD+++ + + I +K ++ +FK++DLG LRY
Sbjct: 1071 YKQSQHDHSLFTKHHGTHFTVILIYVDDLIIAGTDSEEINHIKQSLDVKFKIKDLGPLRY 1130
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLEIARS GI + QRKY LD+L++T L KP+ T + + S T+ + DP Y
Sbjct: 1131 FLGLEIARSHLGISLSQRKYTLDLLDETSFLAGKPVLTPIIKGTRLSHTTDSPYEDPAGY 1190
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRLIGKL+YL +RPDI++ V LSQF+ P H AA R+LRYLKG+ GQGLFYP+
Sbjct: 1191 RRLIGKLLYLITTRPDISYSVQQLSQFLSCPQQSHYQAAIRVLRYLKGNPGQGLFYPADS 1250
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
LQLKA+ DSDWA+CPDTRRS +G+ IF+GNSLISW+ KKQ+T+SRSS+EAEYRALA T+
Sbjct: 1251 PLQLKAFSDSDWASCPDTRRSLSGYSIFLGNSLISWKCKKQSTISRSSSEAEYRALAATA 1310
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CE+ WL YLLQDF PA+++CDNQSA H+ N +FHERTKHIE+DCH VRE++ +G
Sbjct: 1311 CEIQWLTYLLQDFSVPFTTPALLYCDNQSARHIASNAVFHERTKHIEIDCHLVREKLQAG 1370
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFS 1217
+ + I+S QLAD+LTK L S FQ+LLSK+G+INI+S
Sbjct: 1371 LFHLLPIASSHQLADILTKPLDPSPFQYLLSKLGVINIYS 1410
Score = 254 bits (649), Expect(3) = 0.0
Identities = 144/367 (39%), Positives = 206/367 (56%), Gaps = 3/367 (0%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
++V A++LINR PSP L N SPY++L+ PP L+VFG LCYAST R+K P+A
Sbjct: 673 YAVGHAIHLINRLPSPVLNNSSPYQMLYDKPPTLLDLKVFGSLCYASTLVQGRSKLAPKA 732
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVPLPDVPTST 3148
V+LG G KG+ +LD T I+VSRNV F EH FPF +K + + +
Sbjct: 733 TKGVYLGVKQGTKGFLVLDLLTRSIFVSRNVVFYEHIFPFFEKGS-----TVITNSQQQN 787
Query: 3147 DEXXXXXXXXXXXXXXMT-NGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVSTHTP 2971
D T + +L DS + + + P+ SP +
Sbjct: 788 DACFDFLYLDSSSHPVTTIDNSSLLDIDSAHYENDLNDIDESAHPSETSSPSQLRKSTRH 847
Query: 2970 DLSPLHSXXXXXXXXXXPSYLRDYHCNLL--TQPPTARSLSSVCTSHPITDHLTYSNLSS 2797
SP +YL+DYHCNLL PP + + +P+ L+Y +LS+
Sbjct: 848 KCSP--------------AYLKDYHCNLLIGVPPPEDKHIR-----YPLNTVLSYDSLSA 888
Query: 2796 SYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCKY 2617
SY + LSI+ +P T+ +A+++ W +A+ +EL L N TW+I LPPG IG K+
Sbjct: 889 SYSRYVLSITTHVEPHTFNQAVKNKVWVEAMQAELDALEHNKTWTIMPLPPGKTPIGSKW 948
Query: 2616 VFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHLH 2437
V+K K+K DGS+++YKARLV KGYTQ +G DY +TF+PV K++TVR+ L+IA+ HW LH
Sbjct: 949 VYKIKYKSDGSIERYKARLVVKGYTQIQGLDYFDTFAPVAKLSTVRMLLAIASCQHWELH 1008
Query: 2436 QLDVHNA 2416
QLD++NA
Sbjct: 1009 QLDINNA 1015
Score = 57.4 bits (137), Expect(3) = 0.0
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFW 3518
TPQQN +VERKH+HILN+ R+L+F SN+P FW
Sbjct: 639 TPQQNSVVERKHRHILNITRTLLFHSNVPKSFW 671
>gb|KYP68426.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1423
Score = 438 bits (1126), Expect(3) = 0.0
Identities = 214/397 (53%), Positives = 278/397 (70%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL E++YMK PPG ++ S N VCKL KS+YGLKQASRQWN KLT L G
Sbjct: 1019 FLHGDLVEEVYMKPPPGLILS-----SPNKVCKLQKSLYGLKQASRQWNIKLTETLKLFG 1073
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
FVQSKSDYSLFT+ GF+A+LVYVDD+++ + I VK + QF ++DLG L Y
Sbjct: 1074 FVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKDLGQLSY 1133
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLE +RS +GI VCQRKY L++L+DTG+L KP ST ++ + SDP+ Y
Sbjct: 1134 FLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLYSDPSSY 1193
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+ +RPD+ F V LSQFM +P + H AA ++LRY+K + +GLF+PS
Sbjct: 1194 RRLVGRLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAARKVLRYVKATPTKGLFFPSSS 1253
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
DL+L Y DSDWA CPD+RRS +GFC F+GN+L+SW+SKKQ VSRSS+EAEYRALA
Sbjct: 1254 DLKLTGYTDSDWATCPDSRRSISGFCFFLGNALVSWKSKKQNVVSRSSSEAEYRALALGV 1313
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CE WL LL DF P +FCDNQSA+++ N +FHERTKH+E+DCH VR+++ +G
Sbjct: 1314 CEAQWLHKLLTDFQLQDLIPISLFCDNQSALYIAANPVFHERTKHVEIDCHTVRDQVQAG 1373
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIIN 1226
+ I+S QLAD+LTK L FQ + K+G+ N
Sbjct: 1374 FIHLAPITSSGQLADILTKPLLPKMFQDFVCKLGLSN 1410
Score = 275 bits (704), Expect(3) = 0.0
Identities = 153/375 (40%), Positives = 219/375 (58%), Gaps = 11/375 (2%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
+++ AV+LINR P+ +L SPY +L+ P++SHL+VFGCL +AST S +RTK +PR+
Sbjct: 677 YAIGHAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAFASTLSHNRTKLEPRS 736
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPS---PVVPLPDVP 3157
+ +FLGY G KG+ + D T + ++SR+VQF E+ FP + +I S PVVP+ +P
Sbjct: 737 RKCMFLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFSIQSTDGPVVPIAQMP 796
Query: 3156 -TSTDEXXXXXXXXXXXXXXMTNGHTL-----GHQDSPNISHSPPQLH--SPQTPNRHVS 3001
TS D N TL + D PNI + P++ S + NR
Sbjct: 797 LTSCDPIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEINIPEIRRTSQRVKNR--- 853
Query: 3000 PVSDVSTHTPDLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDH 2821
P YL+DYHC L SS +PI+D+
Sbjct: 854 ---------------------------PGYLQDYHCTLAASKVDQ---SSSTARYPISDY 883
Query: 2820 LTYSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPG 2641
L Y++ S+ +SF +IS +P +YQ+AI D WK+AI +EL L + TW +T LPP
Sbjct: 884 LPYTSYSAVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPN 943
Query: 2640 NRAIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIA 2461
RA+GC++VFK K+ DGSV++YKARLVAKG+TQ G DY +TFSPVV++TT+R+FL+IA
Sbjct: 944 KRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIA 1003
Query: 2460 AMHHWHLHQLDVHNA 2416
A +W +HQLD++ A
Sbjct: 1004 AASNWSVHQLDINTA 1018
Score = 60.5 bits (145), Expect(3) = 0.0
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
TPQQNG+VERKHQHIL++AR+LMFQSN+ FW ++
Sbjct: 643 TPQQNGVVERKHQHILSMARALMFQSNVSKMFWNYAI 679
>gb|KYP43110.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1353
Score = 436 bits (1122), Expect(3) = 0.0
Identities = 213/397 (53%), Positives = 277/397 (69%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL E++YMK PPG ++ S N VCKL KS+YGLKQ SRQWN KLT L G
Sbjct: 949 FLHGDLVEEVYMKPPPGLILS-----SPNKVCKLQKSLYGLKQVSRQWNIKLTETLKLFG 1003
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
FVQSKSDYSLFT+ GF+A+LVYVDD+++ + I VK + QF ++DLG L Y
Sbjct: 1004 FVQSKSDYSLFTKRTNIGFIAILVYVDDLIISGSDETEIMKVKRLLDKQFSIKDLGQLSY 1063
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLE +RS +GI VCQRKY L++L+DTG+L KP ST ++ + SDP+ Y
Sbjct: 1064 FLGLEFSRSDQGISVCQRKYALELLQDTGLLASKPCSTPMDHTTRLHHDPLDLYSDPSSY 1123
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+ +RPD+ F V LSQFM +P + H AA ++LRY+K + +GLF+PS
Sbjct: 1124 RRLVGRLIYLTHTRPDLAFAVGKLSQFMHQPNNAHFQAARKVLRYVKATPTKGLFFPSSS 1183
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
DL+L Y DSDWA CPD+RRS +GFC F+GN+L+SW+SKKQ VSRSS+EAEYRALA
Sbjct: 1184 DLKLTGYTDSDWATCPDSRRSISGFCFFLGNALVSWKSKKQNVVSRSSSEAEYRALALGV 1243
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CE WL LL DF P +FCDNQSA+++ N +FHERTKH+E+DCH VR+++ +G
Sbjct: 1244 CEAQWLHKLLTDFQLQDLIPISLFCDNQSALYIAANPVFHERTKHVEIDCHTVRDQVQAG 1303
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIIN 1226
+ I+S QLAD+LTK L FQ + K+G+ N
Sbjct: 1304 FIHLAPITSSGQLADILTKPLLPKMFQDFVCKLGLSN 1340
Score = 275 bits (704), Expect(3) = 0.0
Identities = 153/375 (40%), Positives = 219/375 (58%), Gaps = 11/375 (2%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
+++ AV+LINR P+ +L SPY +L+ P++SHL+VFGCL +AST S +RTK +PR+
Sbjct: 607 YAIGHAVHLINRLPTRFLQQNSPYYVLYSEKPDFSHLKVFGCLAFASTLSHNRTKLEPRS 666
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPS---PVVPLPDVP 3157
+ +FLGY G KG+ + D T + ++SR+VQF E+ FP + +I S PVVP+ +P
Sbjct: 667 RKCMFLGYSSGTKGFIMYDLKTRETFISRDVQFYENIFPLQKDFSIQSTDGPVVPIAQMP 726
Query: 3156 -TSTDEXXXXXXXXXXXXXXMTNGHTL-----GHQDSPNISHSPPQLH--SPQTPNRHVS 3001
TS D N TL + D PNI + P++ S + NR
Sbjct: 727 LTSCDPIPSHTHDNLDETEHEHNSSTLPMTNSSNSDQPNIEINIPEIRRTSQRVKNR--- 783
Query: 3000 PVSDVSTHTPDLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDH 2821
P YL+DYHC L SS +PI+D+
Sbjct: 784 ---------------------------PGYLQDYHCTLAASKVDQ---SSSTARYPISDY 813
Query: 2820 LTYSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPG 2641
L Y++ S+ +SF +IS +P +YQ+AI D WK+AI +EL L + TW +T LPP
Sbjct: 814 LPYTSYSAVQQSFVSTISSIIEPRSYQDAINHDCWKEAIRAELDALDKQKTWILTDLPPN 873
Query: 2640 NRAIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIA 2461
RA+GC++VFK K+ DGSV++YKARLVAKG+TQ G DY +TFSPVV++TT+R+FL+IA
Sbjct: 874 KRAVGCRWVFKVKYHADGSVERYKARLVAKGFTQIPGLDYIDTFSPVVRMTTIRVFLAIA 933
Query: 2460 AMHHWHLHQLDVHNA 2416
A +W +HQLD++ A
Sbjct: 934 AASNWSVHQLDINTA 948
Score = 60.5 bits (145), Expect(3) = 0.0
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
TPQQNG+VERKHQHIL++AR+LMFQSN+ FW ++
Sbjct: 573 TPQQNGVVERKHQHILSMARALMFQSNVSKMFWNYAI 609
>gb|KYP70921.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1352
Score = 443 bits (1139), Expect(3) = 0.0
Identities = 219/404 (54%), Positives = 289/404 (71%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL+E++YM LPPG + VCKL++S+YGLKQASRQW +L++F+ G
Sbjct: 952 FLHGDLNEEVYMHLPPGLT-----TTTPGQVCKLNRSLYGLKQASRQWYARLSTFIMQQG 1006
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F S +D+SLF + ALLVYVDDI++ +L I + + FK++DLG L Y
Sbjct: 1007 FHHSSADHSLFLKFTNSACTALLVYVDDIVLAGNDLTEIHQITALLHKTFKIKDLGDLTY 1066
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLE+AR+S I +CQRKY LDIL DTGML C P ST ++ S + T L+DP+ Y
Sbjct: 1067 FLGLEVARNSIEIHLCQRKYTLDILSDTGMLACCPSSTLMDYKAALSSDTGTPLTDPSAY 1126
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
R+LIG+LIYL+ + PDIT V LSQF KPT H HAA+RILRYLK + G+G+F +
Sbjct: 1127 RQLIGRLIYLTNTHPDITHAVQHLSQFASKPTTYHQHAAFRILRYLKQAPGRGIFLSANS 1186
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
LQLK++ DSDWA C DTRRS TGF +++G+SLISW+SKKQATVSRSS+EAEYRALA TS
Sbjct: 1187 SLQLKSFSDSDWAGCMDTRRSITGFAVYLGHSLISWKSKKQATVSRSSSEAEYRALASTS 1246
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CE+ WL YLL+DF +PA+++CDNQS + + N +FHERTKHIE+DCH VRE++ +G
Sbjct: 1247 CEIQWLTYLLEDFRLQFIRPALLYCDNQSVLQIACNQVFHERTKHIEIDCHLVREKVSNG 1306
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFSHLEG 1205
+L+ + +SS QLAD+ TK+L S F L SK+G+ +I+S L G
Sbjct: 1307 LLKLLPVSSSAQLADIYTKALSPSRFNELNSKLGMSDIYSQLAG 1350
Score = 268 bits (685), Expect(3) = 0.0
Identities = 150/365 (41%), Positives = 203/365 (55%), Gaps = 1/365 (0%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
F+++ A Y+IN P+P+L + SP+E L P + + LRVFGCLCY ST +HRTK DPRA
Sbjct: 625 FALMHATYIINCIPTPFLQHTSPFENLNGKPCDITTLRVFGCLCYVSTLKAHRTKLDPRA 684
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFP-FAQKVNIPSPVVPLPDVPTS 3151
P VFLG+ KGY + +T I VSRNV F E+ FP F Q S LP TS
Sbjct: 685 SPCVFLGFQPHTKGYLTFNLNTRSIEVSRNVVFYENHFPYFTQDTQSASSTPSLPTPFTS 744
Query: 3150 TDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVSTHTP 2971
H SH P L SP++P P + P
Sbjct: 745 NPMI-----------------HDYNFYPPSPSSHPPHSLSSPESPTSSPIPSRPTRSRHP 787
Query: 2970 DLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNLSSSY 2791
SYLRDYH + P+ SS +P+ ++Y+ LS +
Sbjct: 788 P-----------------SYLRDYHMTFTSTGPS----SSPGIRYPLDSVISYNRLSHPF 826
Query: 2790 KSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCKYVF 2611
+ F +SISL +P +Y EA +SD W +A+ E+T L N TW++T+LPP AIGCK+++
Sbjct: 827 RHFIMSISLLTEPKSYAEASKSDCWIKAMTDEITALEANNTWTVTSLPPHKTAIGCKWIY 886
Query: 2610 KTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHLHQL 2431
K K DGSV+++KARLVAKGYTQ EG D+ +TF+PV K+TTV + LS+AA+H+W L QL
Sbjct: 887 KVKHHADGSVERHKARLVAKGYTQLEGLDFLDTFAPVAKLTTVHLLLSLAAIHNWFLKQL 946
Query: 2430 DVHNA 2416
D++NA
Sbjct: 947 DINNA 951
Score = 59.7 bits (143), Expect(3) = 0.0
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSVL 3503
TP+QN IVERKHQH+LNV R+L+FQSNLP FW +++
Sbjct: 591 TPEQNRIVERKHQHLLNVTRALLFQSNLPPTFWNFALM 628
>gb|KYP34293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1376
Score = 456 bits (1173), Expect(3) = 0.0
Identities = 225/404 (55%), Positives = 295/404 (73%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL+E++YM LP G E N VCKL KS+YGLKQASRQW KL+SFL G
Sbjct: 974 FLHGDLNEEVYMTLPLGMRPE-----YSNQVCKLQKSLYGLKQASRQWFAKLSSFLIHHG 1028
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
+ QS SD+SLF + + ALL+YVDDI++ NL IQ + + FK++DLG L+Y
Sbjct: 1029 YHQSASDHSLFMKFSSSSTTALLIYVDDIVLAGNNLSEIQLITGLLDVAFKIKDLGNLKY 1088
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLE+AR+ GI + QRKYVLDIL D GM+ +P+ST ++ + S +S T L+DP+ Y
Sbjct: 1089 FLGLEVARNKSGIHLSQRKYVLDILSDCGMMASRPVSTPMDYTSRLSASSGTPLADPSSY 1148
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+ +RPDI++ VH LSQFM P+ H A +RILRYLK + G GLF+P+
Sbjct: 1149 RRLLGRLIYLTTTRPDISYVVHHLSQFMSAPSTAHSQAIFRILRYLKQAPGSGLFFPTNS 1208
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
L LKA+ DSDWA C DTRRS TGF +++G+SLISWRSKKQ TVSRSS+EAEYRALA T+
Sbjct: 1209 SLHLKAFSDSDWAGCLDTRRSITGFSVYLGDSLISWRSKKQPTVSRSSSEAEYRALATTT 1268
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
EL WL YLL D +PA+++CDNQSA+H+ N +FHERTKHI++DCH VRE++ SG
Sbjct: 1269 SELQWLTYLLHDLHVPVHQPALLYCDNQSALHIAANQVFHERTKHIDIDCHLVREKLQSG 1328
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFSHLEG 1205
+L+ + ++S QLAD+ TKSL S F L SK+G++N++S LEG
Sbjct: 1329 LLKLLPVASPHQLADIFTKSLSPSMFTALYSKLGMLNLYSQLEG 1372
Score = 253 bits (647), Expect(3) = 0.0
Identities = 148/379 (39%), Positives = 212/379 (55%), Gaps = 15/379 (3%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
+++L A YLINR +P L NK+P++ L+ + + LRVFGCLCY ST +++R K DPRA
Sbjct: 630 YALLHATYLINRITTPLLDNKTPFQKLYGQTCDITELRVFGCLCYVSTSTANRKKLDPRA 689
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVPLPDVPTST 3148
P VFLG+ KGY D T I +SRNV F E+ FP Q + S + + +
Sbjct: 690 HPCVFLGFSPTTKGYITYDLHTRAITISRNVSFYENHFPLLQSTSSTSNIPVVSPISFGI 749
Query: 3147 DEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVS----- 2983
H+ H D +I P Q H+ +PN + +S
Sbjct: 750 --------------------HSPSH-DLISILPDPHQ-HNVTSPNPATTSHDSISLAPYS 787
Query: 2982 ----THTPDLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTS------HP 2833
+ P+ SPL SYL+DYH SL+S T+ +P
Sbjct: 788 TTADSLPPNSSPLRRSTRLRNPP---SYLQDYH----------HSLTSTSTNLHPGMLYP 834
Query: 2832 ITDHLTYSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITT 2653
I +++YS LS+ +++F SIS +P +Y EA + D W +A+++EL L N TW++T
Sbjct: 835 IEKYISYSRLSNDFQAFVSSISAVSEPHSYAEAAKHDCWLKAMHAELEALKMNQTWTLTP 894
Query: 2652 LPPGNRAIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIF 2473
LPP +A+GC++++K K+ DGS+++YKARLVAKGYTQ EG DY TFSPV K+TTVR+
Sbjct: 895 LPPHKQAVGCRWIYKIKYNADGSIERYKARLVAKGYTQVEGLDYLATFSPVAKLTTVRLL 954
Query: 2472 LSIAAMHHWHLHQLDVHNA 2416
L++AA+ WHL QLDV+NA
Sbjct: 955 LALAAVFDWHLKQLDVNNA 973
Score = 57.0 bits (136), Expect(3) = 0.0
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSVL 3503
TPQQNG+VERKHQH+LNV +L+F S LP FW ++L
Sbjct: 596 TPQQNGVVERKHQHLLNVTHALLFHSKLPYCFWSYALL 633
>gb|KYP64985.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1394
Score = 432 bits (1111), Expect(3) = 0.0
Identities = 216/398 (54%), Positives = 278/398 (69%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL ++YMK PPG ++ +LVCKLHKS+YGL+QASRQ N KLTS L + G
Sbjct: 998 FLHGDLDVEVYMKPPPGLILP-----EPHLVCKLHKSLYGLRQASRQGNSKLTSALISYG 1052
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F QS +D+SLF RH+ F ALLVYVDDI++ ++ I VK + ++F+++DLG L+
Sbjct: 1053 FSQSPADHSLFIRHSSTSFTALLVYVDDIVLTGDSIQDIVAVKKFLHHEFRIKDLGNLKL 1112
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLG ++ARS +G+ + QRKY LDIL + G GCKP ++ K + DPT Y
Sbjct: 1113 FLGFDVARSQQGLILNQRKYCLDILAEFGFTGCKPANSPSNPTVKLKDDEGDLVQDPTAY 1172
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRLIGKL YL+ +RPDI+F V +SQFM KP H++AA+RIL+YLKG G GLFYPS
Sbjct: 1173 RRLIGKLQYLTNTRPDISFAVQQVSQFMSKPRYSHLNAAFRILKYLKGCPGLGLFYPSAN 1232
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+++A+ DSDWA C TR+STTG+C+F GN LISW+SKKQ+TVSRSS EAEYRALA +
Sbjct: 1233 PHRIQAFSDSDWATCCITRKSTTGYCVFYGNCLISWKSKKQSTVSRSSTEAEYRALASVA 1292
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CEL WL+Y+ D P FCDNQSAI L KN FHERTKHIE+DCH +R +I+ G
Sbjct: 1293 CELQWLKYVADDLCLQIPLPFPTFCDNQSAIQLAKNPSFHERTKHIEVDCHLIRAKILDG 1352
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINI 1223
++ H+ SK QLAD+ TKSL F LSKMG++NI
Sbjct: 1353 LIVLSHVPSKHQLADMFTKSLYPGPFNVNLSKMGLLNI 1390
Score = 269 bits (688), Expect(3) = 0.0
Identities = 154/369 (41%), Positives = 209/369 (56%), Gaps = 5/369 (1%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
+++ AV+LINR P+P+L NKSPYE +F P+ S LRVFGCL +A+T +S TK D RA
Sbjct: 653 YAIKHAVHLINRLPTPFLENKSPYESVFGKIPDLSTLRVFGCLAFANTITSGITKLDKRA 712
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVPLPDVPTST 3148
+FLG+ G+KGY + + +T +SRNV F E FP+A SP V +T
Sbjct: 713 SKCIFLGFKPGVKGYLLFNLTTKSFLLSRNVIFYESHFPYASN----SPSVSNNHTTGTT 768
Query: 3147 DEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSP--PQLHSPQTPNRHVSPVSD---VS 2983
+ S NI H+ P L N V V +S
Sbjct: 769 ASQQSFDSLIAFDIISAIPNNVTSDIVSSNIDHNAVEPVLQFNDDSNDAVQIVDQPTRIS 828
Query: 2982 THTPDLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNL 2803
T P P +YL DY C L+ T S CT +P+ +L+YSN
Sbjct: 829 TR-PRKPP--------------AYLSDYDCPTLSSANT-----SCCTPYPLHSYLSYSNC 868
Query: 2802 SSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGC 2623
S S+ +F +S+S T +P +++EA + DHW+QA+ +E+ L N TWS+ LPP R +GC
Sbjct: 869 SDSHTAFCMSLSATIEPTSFKEACKHDHWQQAMLAEIQALERNKTWSLVRLPPKKRVVGC 928
Query: 2622 KYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWH 2443
K+V+KTK DGS++++KARLVAKG+TQ EG D+ ETFSPVVK+TTVR LS+A H+W
Sbjct: 929 KWVYKTKLNADGSIERHKARLVAKGFTQTEGMDFFETFSPVVKLTTVRFLLSVAVSHNWF 988
Query: 2442 LHQLDVHNA 2416
LHQLDV NA
Sbjct: 989 LHQLDVDNA 997
Score = 62.4 bits (150), Expect(3) = 0.0
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
TPQQNGIVERKHQHILNVAR+L+FQS L S FW ++
Sbjct: 619 TPQQNGIVERKHQHILNVARALLFQSGLSSVFWSYAI 655
>ref|XP_013664987.1| PREDICTED: uncharacterized protein LOC106369368 [Brassica napus]
Length = 1808
Score = 434 bits (1116), Expect(3) = 0.0
Identities = 207/399 (51%), Positives = 288/399 (72%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+G+L E+IYM+LP G+ + N VC+L KSIYGLKQASRQW + +S L
Sbjct: 1401 FLHGELDEEIYMRLPQGYTPPTGVILPPNPVCRLRKSIYGLKQASRQWYKRFSSVLLGDN 1460
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
++QS +D +LF + + D FVA+LVYVDDI++ S N + ++ ++++FK++DLG R+
Sbjct: 1461 YIQSPADNTLFIKRSGDSFVAVLVYVDDIMIASNNTAAVADLQALLRSEFKIKDLGQARF 1520
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLEIARSS GI VCQRKY L++LED+G+LGCKP S ++ +K L +PT Y
Sbjct: 1521 FLGLEIARSSTGISVCQRKYTLNLLEDSGLLGCKPSSIPMDPTLHLTKDMGVPLENPTAY 1580
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
R LIG+L+YL+++RPDITF VH LSQF+ PTD H AA++ILRYLK + GQG + +
Sbjct: 1581 RELIGRLLYLTITRPDITFAVHQLSQFLSSPTDVHFQAAHKILRYLKNNPGQGFMFSANA 1640
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+L L A+ D+DWA C +TRRS TGFC+++G+SL+SW+SKKQA VSRSS EAEYR+LA +
Sbjct: 1641 ELCLNAFADADWATCKETRRSITGFCVYLGSSLLSWKSKKQAVVSRSSTEAEYRSLALAT 1700
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CEL+W++ LL+D PA ++CDN+SAIH+ N +FHERTKHIE+DCH VR+++ +G
Sbjct: 1701 CELIWIQQLLRDLLVTVTGPAKLYCDNKSAIHIANNPVFHERTKHIEIDCHTVRDQVKAG 1760
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIF 1220
L H+S+ QLAD+LTK L F LL +M + +++
Sbjct: 1761 KLLMFHVSTGNQLADILTKPLHPGPFNSLLHRMSLSSLY 1799
Score = 269 bits (688), Expect(3) = 0.0
Identities = 155/373 (41%), Positives = 226/373 (60%), Gaps = 11/373 (2%)
Frame = -1
Query: 3501 VLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAKP 3322
+ TAV+LIN+ PSP L NKSP+E L P+Y LR FGCLC+AST++ RTKF PRA P
Sbjct: 1048 IRTAVFLINKMPSPLLDNKSPFEKLLGKAPDYHLLRSFGCLCFASTNTKDRTKFSPRAIP 1107
Query: 3321 YVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPF------AQKVNI-PSPVVPLPD 3163
VFLGYP G+KGYK+LD ++ I VSRNV F E FPF ++ V++ P+ ++PLP
Sbjct: 1108 CVFLGYPSGVKGYKVLDLESHSIIVSRNVIFKEKVFPFKTSELLSKSVDMFPNTILPLP- 1166
Query: 3162 VPTSTDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVS 2983
VP E +NG + S ++S S + S + H + + S
Sbjct: 1167 VPLHFVESTPIS----------SNGES-SQPVSDDLSRS---VSSETRTHTHDTVSNTDS 1212
Query: 2982 THTPDLSPLH--SXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVC--TSHPITDHLT 2815
THT + +H P+YL YHC+L++ P SS C T +P++ ++
Sbjct: 1213 THTTTDTGIHLSDVSRPKRMTRAPTYLSQYHCSLVSTIP-----SSSCRKTPYPLSSVIS 1267
Query: 2814 YSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNR 2635
Y + ++S + SL +P T+++A+ SD WK+A N EL + +N TW + +LP G
Sbjct: 1268 YVRFNPVFQSSVHAYSLETEPKTFKQAMSSDKWKKAANVELDAMEQNRTWDVVSLPDGKT 1327
Query: 2634 AIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAM 2455
AIGCK+VF K+ DG+V+++K RLVA+G+TQ+EG DY +TFSPV K+T+V++ L++AA+
Sbjct: 1328 AIGCKWVFTIKYNADGTVERHKGRLVAQGFTQQEGIDYIDTFSPVAKLTSVKLLLALAAI 1387
Query: 2454 HHWHLHQLDVHNA 2416
W L+Q+DV NA
Sbjct: 1388 KGWSLNQMDVSNA 1400
Score = 58.2 bits (139), Expect(3) = 0.0
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = -3
Query: 3610 QQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
QQN +VERKHQH+LNVAR+L+FQSN+P +W D +
Sbjct: 1014 QQNSVVERKHQHLLNVARALLFQSNVPMVYWSDCI 1048
Score = 262 bits (670), Expect(3) = e-145
Identities = 157/398 (39%), Positives = 231/398 (58%), Gaps = 36/398 (9%)
Frame = -1
Query: 3501 VLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAKP 3322
+ TAV+LIN+ PSP L NKSP+E L P+Y LR FGCLC+AST++ RTKF PRA P
Sbjct: 412 IRTAVFLINKMPSPLLDNKSPFEKLLGKAPDYHLLRSFGCLCFASTNTKDRTKFSPRAIP 471
Query: 3321 YVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPF------AQKVNI-PSPVVPLPD 3163
VFLGYP G+KGYK+LD ++ I VSRNV F E FPF ++ V++ P+ ++PLP
Sbjct: 472 CVFLGYPSGVKGYKVLDLESHSIIVSRNVIFKEKVFPFKTSELLSKSVDMFPNTILPLP- 530
Query: 3162 VPTSTDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVS 2983
VP E +NG + S ++S S + S + H + + S
Sbjct: 531 VPLHFVESTPIS----------SNGES-SQPVSDDLSRS---VSSETRTHTHDTVSNTDS 576
Query: 2982 THTPDLSPLH--SXXXXXXXXXXPSYLRDYHCNLLTQPPTA-----RSLSSV----C--- 2845
THT + +H P+YL YHC+L++ P++ RS SSV C
Sbjct: 577 THTTTDTGIHLSDVSRPKRTTRAPTYLSQYHCSLVSTIPSSSCRLPRSTSSVNEHHCFLV 636
Query: 2844 ---------------TSHPITDHLTYSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQ 2710
T +P++ ++Y + ++S + SL +P T+++A+ SD WK+
Sbjct: 637 PFSSISSPSFPSSFKTPYPLSSVISYVRFNPVFQSSVHAYSLETEPKTFKQAMSSDKWKK 696
Query: 2709 AINSELTVLIENGTWSITTLPPGNRAIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREG 2530
A N EL + +N TW + +LP G AIGC++VF K+ DG+V+++K RLVA+G+TQ+EG
Sbjct: 697 AANVELDAMEQNRTWDVVSLPDGKTAIGCRWVFTIKYNADGTVERHKGRLVAQGFTQQEG 756
Query: 2529 FDYQETFSPVVKITTVRIFLSIAAMHHWHLHQLDVHNA 2416
DY +TFSPV K+T+V++ L++AA+ W L+Q+DV NA
Sbjct: 757 IDYIDTFSPVAKLTSVKLLLALAAIKGWSLNQMDVSNA 794
Score = 243 bits (621), Expect(3) = e-145
Identities = 122/233 (52%), Positives = 164/233 (70%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+G+L E+IYM+LP G+ + N VC+L KSIYGLKQASRQW + +S L
Sbjct: 795 FLHGELDEEIYMRLPQGYTPPTGVILPPNPVCRLRKSIYGLKQASRQWYKRFSSVLLGDN 854
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
++QS +D +LF + + D FVA+LVYVDDI++ S N + ++ ++++FK++DLG R+
Sbjct: 855 YIQSPADNTLFIKRSGDSFVAVLVYVDDIMIASNNTAAVADLQALLRSEFKIKDLGQARF 914
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLEIARSS GI VCQRKY L++LED+G+LGCKP SS L +PT Y
Sbjct: 915 FLGLEIARSSTGISVCQRKYTLNLLEDSGLLGCKP--------------SSIPLENPTAY 960
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQG 1718
R LIG+L+YL+++RPDITF VH LSQF+ PTD H AA++ILRYLK + GQG
Sbjct: 961 RELIGRLLYLTITRPDITFAVHQLSQFLSSPTDVHFQAAHKILRYLKNNPGQG 1013
Score = 62.8 bits (151), Expect(3) = e-145
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
TPQQN +VERKHQH+LNVAR+L+FQSN+P +W D +
Sbjct: 376 TPQQNSVVERKHQHLLNVARALLFQSNVPMVYWSDCI 412
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 423 bits (1088), Expect(3) = 0.0
Identities = 211/399 (52%), Positives = 279/399 (69%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FLNGDL E IYMKLP G+ + N+VC+L KSIYGLKQASRQW K ++ L +G
Sbjct: 1060 FLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALG 1119
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F + D++LF R F+ LLVYVDDI++ S Q++ +A++ FK+R+LG L+Y
Sbjct: 1120 FEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKY 1179
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLE+AR+S+GI + QRKY L++L ML CKP S + N + SK L D +Y
Sbjct: 1180 FLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMY 1239
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+GKL+YL+++RPDITF V+ L QF P H+ A Y++L+Y+KG++GQGLFY +
Sbjct: 1240 RRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAED 1299
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
DL LK Y D+DW CPD+RRSTTGF +F+G+SLISWRSKKQ TVSRSSAEAEYRALA S
Sbjct: 1300 DLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALAS 1359
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CE+ WL LL P I++ D+ +A+++ N +FHERTKHIE+DCH VRE++ +G
Sbjct: 1360 CEMAWLSTLLLALRVHSGVP-ILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNG 1418
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIF 1220
L+ +H+ +K Q+AD+LTK L F LLSKM I NIF
Sbjct: 1419 QLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSIQNIF 1457
Score = 266 bits (681), Expect(3) = 0.0
Identities = 150/362 (41%), Positives = 207/362 (57%)
Frame = -1
Query: 3501 VLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAKP 3322
VLTAV+LINRTPS L+NK+P+E+L P+YS L+ FGCLCY+ST S R KF PR++
Sbjct: 755 VLTAVFLINRTPSALLSNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRA 814
Query: 3321 YVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVPLPDVPTSTDE 3142
VFLGYP G KGYK+LD + +++SRNV+F E FP A DV T D
Sbjct: 815 CVFLGYPFGFKGYKLLDLESNVVHISRNVEFHEELFPLASS---QQSATTASDVFTPMD- 870
Query: 3141 XXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVSTHTPDLS 2962
+++G+++ SH P SPQ +SP + +S
Sbjct: 871 -------------PLSSGNSI-------TSHLP----SPQ-----ISPSTQISKRRITKF 901
Query: 2961 PLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNLSSSYKSF 2782
P H L+DYHC + + SHPI+ L+YS +S S+ +
Sbjct: 902 PAH--------------LQDYHCYFVNKD----------DSHPISSSLSYSQISPSHMLY 937
Query: 2781 ALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCKYVFKTK 2602
+IS P +Y EA +S W AI+ E+ + TW IT+LPPG +A+GCK+VF K
Sbjct: 938 INNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVK 997
Query: 2601 FKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHLHQLDVH 2422
F DGS++++KAR+VAKGYTQ+EG DY ETFSPV K+ TV++ L ++A W+L+QLD+
Sbjct: 998 FHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDIS 1057
Query: 2421 NA 2416
NA
Sbjct: 1058 NA 1059
Score = 65.9 bits (159), Expect(3) = 0.0
Identities = 28/40 (70%), Positives = 35/40 (87%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSVLSS 3497
TP+QN +VERKHQHILNVAR+LMFQSN+ +WGD VL++
Sbjct: 719 TPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTA 758
>gb|KYP42321.1| Copia protein [Cajanus cajan]
Length = 1456
Score = 437 bits (1123), Expect(3) = 0.0
Identities = 215/400 (53%), Positives = 285/400 (71%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL E++YMK PPGF + LVCKLHKS+YGLKQASRQWN KLT L ++
Sbjct: 1060 FLHGDLFEEVYMKPPPGFKLS-----HPRLVCKLHKSLYGLKQASRQWNQKLTEALISLN 1114
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F+QS +D+SLF + + ALLVYVDD+++ ++ I VK + QF ++DLG L++
Sbjct: 1115 FIQSSTDHSLFIKKSHSSITALLVYVDDVVLTGNDMAEISAVKAYLHAQFHIKDLGPLKF 1174
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLEIARS G+ + QRKY L++L + G+ CKP+ST ++ + K + L DPTI+
Sbjct: 1175 FLGLEIARSQSGLILNQRKYCLELLSEHGLTDCKPVSTPIDASVKLYASEGLPLDDPTIF 1234
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRLIG+L+YL+ +RPDI+F V LSQF+D P H AA RILRYLK S GLFYPS
Sbjct: 1235 RRLIGRLLYLTNTRPDISFAVQQLSQFVDSPRATHFQAALRILRYLKSSPALGLFYPSQT 1294
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+ +++A+ DSDWA+CP+TRRS TGFCIF G++LISW+SKKQ+TVSRSS+EAEYRALA +
Sbjct: 1295 EHRIQAFSDSDWASCPNTRRSVTGFCIFYGSALISWKSKKQSTVSRSSSEAEYRALASVT 1354
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CEL WL +L D P IFCD+QSAI++ KN FHERTKHIE+DCH R +I G
Sbjct: 1355 CELQWLLFLCHDLSINIPTPFSIFCDSQSAIYIAKNPTFHERTKHIEVDCHLTRLKIQQG 1414
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFS 1217
++ H+ SK QLAD+ TK+L NF +SK+ +I+I++
Sbjct: 1415 LIHLFHVPSKSQLADVFTKALYPRNFTEAVSKLCLIDIYN 1454
Score = 255 bits (651), Expect(3) = 0.0
Identities = 149/384 (38%), Positives = 217/384 (56%), Gaps = 20/384 (5%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
F+V A ++INR P+P L+ KSP+E+++ P+ + L+VFGCL +A+T SS RTK D RA
Sbjct: 691 FAVKQATHIINRLPTPLLSQKSPFEMIYNCKPDLTELKVFGCLAFATTLSSKRTKLDRRA 750
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKV-NIPSPVVPLPDVPTS 3151
+FLGY G KG+ + + +SR+V F E FP++ V ++ + L DV
Sbjct: 751 SKCIFLGYKNGTKGFLLFNLHNKSFLISRDVLFYEKIFPYSAHVPSMSASDSLLLDVVKD 810
Query: 3150 TDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVST--- 2980
D T H SP+I P S T + P S ++T
Sbjct: 811 NDTTIYSDPFPTT---------TFSH-GSPSIPLDTPLPSSETTISTDRPPFSPINTCPI 860
Query: 2979 -----HTPDLSPLHSXXXXXXXXXXPS-----------YLRDYHCNLLTQPPTARSLSSV 2848
TP+L ++ + YL++Y+C L + S +S
Sbjct: 861 PTATLSTPELPSSNTTNDASQVVMPQTRVSTRIRKPPRYLQEYYCENLA----SSSAASN 916
Query: 2847 CTSHPITDHLTYSNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGT 2668
C +P++ +TY+N S S+ SF LSIS +P +++EA + W++A+ +EL L +N T
Sbjct: 917 CL-YPLSSFVTYNNCSPSHTSFCLSISAQHEPTSFKEANSEECWRRAMEAELQALEKNQT 975
Query: 2667 WSITTLPPGNRAIGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKIT 2488
WS+ LP G R +GCK+V++ K+K+DGSV++YKARLVAKG+TQ EG DY ETFSPVVK++
Sbjct: 976 WSLVRLPEGKRPVGCKWVYRVKYKVDGSVERYKARLVAKGFTQTEGVDYFETFSPVVKLS 1035
Query: 2487 TVRIFLSIAAMHHWHLHQLDVHNA 2416
TVR LS+AA H+W LHQLDV NA
Sbjct: 1036 TVRFLLSLAAAHNWFLHQLDVDNA 1059
Score = 62.4 bits (150), Expect(3) = 0.0
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = -3
Query: 3613 PQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
PQQNGIVERKHQHILNV R+L+FQ+ LP QFW +V
Sbjct: 658 PQQNGIVERKHQHILNVCRALLFQAKLPKQFWSFAV 693
>gb|KYP55668.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1136
Score = 428 bits (1101), Expect(3) = 0.0
Identities = 211/404 (52%), Positives = 284/404 (70%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL+E++YM+LPPG VC+L +S+YGLKQASRQW +L+SFL G
Sbjct: 736 FLHGDLNEEVYMQLPPGIT-----PSFPGQVCRLQRSLYGLKQASRQWYARLSSFLIQHG 790
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
+V S SD+SLF + + A+L+YVDDI++ +L I + + N F+++DLG L+Y
Sbjct: 791 YVPSPSDHSLFLKCSPAITTAILIYVDDIVLAGNDLTEIHHLTSLLHNTFQIKDLGNLKY 850
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLE+AR+ GI +CQRKY LD+L DTGML KP+ST ++ + S +S T +D Y
Sbjct: 851 FLGLEVARNHTGIHLCQRKYTLDLLSDTGMLASKPVSTPMDYSTHLSASSGTPFTDTAAY 910
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL +RP I + V LSQF+ P H A +RIL YLKG+ G G+F
Sbjct: 911 RRLVGRLIYLPNTRPAIAYAVQQLSQFVSNPPTAHRQALFRILCYLKGTPGSGIFLSVNS 970
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+QL+A+ D DWA CPDTRRS TGF +++G+SLISW+SKKQ TVSRSS+EAEYRALA T+
Sbjct: 971 SVQLRAFSDYDWAGCPDTRRSITGFAVYLGDSLISWKSKKQITVSRSSSEAEYRALATTT 1030
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHIELDCHFVRERIVSG 1337
CEL WL YLL+DF +P+I++CDNQ A+ + N IFHERTKHIE+DCH VR+++ +G
Sbjct: 1031 CELQWLSYLLKDFHIDLIRPSILYCDNQFALQIASNPIFHERTKHIEIDCHIVRDKVSTG 1090
Query: 1336 ILQPIHISSKFQLADLLTKSLPSSNFQFLLSKMGIINIFSHLEG 1205
+L+ + +SS QLAD+LTK L F SK+G++NI S LEG
Sbjct: 1091 LLKLLPVSSSLQLADILTKPLSPFVFHSHYSKLGMLNIHSQLEG 1134
Score = 260 bits (665), Expect(3) = 0.0
Identities = 149/365 (40%), Positives = 208/365 (56%), Gaps = 1/365 (0%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
F++ A +LIN P+P+L N SP+E L+ P + S LRVFGCLCY+S +SHRTK DPRA
Sbjct: 415 FALKHAAFLINCIPTPFLHNISPFEKLYGHPCDISILRVFGCLCYSSIITSHRTKLDPRA 474
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVPLPDVPTST 3148
P +FLG+ KGY +++ T+ + VS+NV F E FP K N PS P+P +P +
Sbjct: 475 HPCIFLGFKPHTKGYLLVNLHTHGLLVSQNVIFHEDHFPSFTKPNSPSFSSPVP-IPYN- 532
Query: 3147 DEXXXXXXXXXXXXXXMTNGHTLGHQDSPNI-SHSPPQLHSPQTPNRHVSPVSDVSTHTP 2971
+ D P+ S S + P P++H SP + P
Sbjct: 533 ------------------------YADYPSFPSSSIVESSEPPPPDQHSSPPPLRRSTRP 568
Query: 2970 DLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNLSSSY 2791
P +YL+D+H + P SS HP+ ++Y LS S+
Sbjct: 569 RRPP--------------TYLQDFHGAFTSTGPH----SSTGIRHPLHSFISYDRLSPSF 610
Query: 2790 KSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCKYVF 2611
+ SIS P + EA +SD W +A++ E++ L N TW +TTLPP AIGC++V+
Sbjct: 611 HHYVFSISSVTKPKNFVEASKSDSWLKAMHEEISALEANNTWVLTTLPPHKTAIGCRWVY 670
Query: 2610 KTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHLHQL 2431
K K K DGS+D+YKARLVAKGYTQ EG D+ +TFSPV K+TTVR+ +S+AA+H+ HL QL
Sbjct: 671 KVKHKADGSIDRYKARLVAKGYTQMEGLDFFDTFSPVAKLTTVRLLISLAAIHNCHLKQL 730
Query: 2430 DVHNA 2416
DV+N+
Sbjct: 731 DVNNS 735
Score = 64.7 bits (156), Expect(3) = 0.0
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFW 3518
TPQQNGIVERKHQH+LNV RSL+FQ+NLPS FW
Sbjct: 381 TPQQNGIVERKHQHLLNVTRSLLFQANLPSIFW 413
>ref|XP_010532348.1| PREDICTED: uncharacterized protein LOC104808371 [Tarenaya
hassleriana]
Length = 1788
Score = 406 bits (1044), Expect(3) = 0.0
Identities = 197/338 (58%), Positives = 251/338 (74%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDL EDIYM LPPG+ KN VCKL KS+YGLKQASRQW K +S L G
Sbjct: 865 FLHGDLDEDIYMSLPPGYTPPVGQNLPKNAVCKLQKSLYGLKQASRQWYRKFSSVLINSG 924
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F QS++D++LF + D F ALLVYVDDI++ + +Q +KD + F ++DLG LRY
Sbjct: 925 FTQSQADHTLFVKKQGDVFTALLVYVDDIVIAGNDDRAVQNLKDTLNQHFNIKDLGPLRY 984
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLGLEIARSSKGI +CQRKY L++L DTG+ GCK +S ++ N S FLSDPT Y
Sbjct: 985 FLGLEIARSSKGIALCQRKYCLELLNDTGLSGCKSVSVPMDPNVHLRHDSGQFLSDPTPY 1044
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
R LIG+L+YL+++RPDITF VH LSQF+ KPT+EH+ AA+RI+RYLK + GQGL+Y +
Sbjct: 1045 RALIGRLLYLTITRPDITFPVHKLSQFLAKPTEEHLKAAHRIVRYLKSNPGQGLYYAADS 1104
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
+L+L A+ D+DWA CPDTRRS TGFCIF+G SLIS++SKKQ T+SRSS EAEYRALA T+
Sbjct: 1105 ELRLNAFADADWATCPDTRRSVTGFCIFLGQSLISFKSKKQNTISRSSTEAEYRALANTT 1164
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHI 1403
CE+VWL +LL D +PA +FCDN+SA+++ N I
Sbjct: 1165 CEVVWLVHLLSDLQVSHQQPANLFCDNKSALYIASNQI 1202
Score = 278 bits (710), Expect(3) = 0.0
Identities = 151/372 (40%), Positives = 211/372 (56%), Gaps = 10/372 (2%)
Frame = -1
Query: 3501 VLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRAKP 3322
V A+YLINR PSP L K+PYE+L+ PP Y HLR FGCLCY+ST+ R KF RA+
Sbjct: 511 VRCAIYLINRLPSPVLQEKTPYEVLYDKPPAYEHLRAFGCLCYSSTNLKDRHKFSVRARA 570
Query: 3321 YVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVN--------IPSPVVPLP 3166
VF+GYP G KGYK+LD T ++YVSR+V F E FPF + N + S +PLP
Sbjct: 571 AVFIGYPQGYKGYKLLDPVTQEVYVSRHVIFHEDIFPFLSQPNYSEFSNNSVSSQPIPLP 630
Query: 3165 DVPTSTDEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSP--PQLHSPQTPNRHVSPVS 2992
P ++ + + H + Q P H P +P N V P
Sbjct: 631 IFPPNSTTVYQTVAPSVETPSTVESPHLI--QTHPTTEHQTVAPSAETPSAGNLPVFP-- 686
Query: 2991 DVSTHTPDLSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTY 2812
P+ P + YL Y+CN S + T +P++ LTY
Sbjct: 687 ---EQRPESRPKRNVKAP-------GYLSQYYCNSTHHD----SQAIFSTPYPMSSVLTY 732
Query: 2811 SNLSSSYKSFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRA 2632
++S YK F L++ +P +++EAI S W QA+ +E+ L +NGTWSI +LP +
Sbjct: 733 DHISPEYKQFLLNLHTDIEPKSFKEAILSPQWTQAMETEIQALTDNGTWSIVSLPQSKKP 792
Query: 2631 IGCKYVFKTKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMH 2452
+GCK+V+K K DG+V++YKARLVAKG+TQ+EG DY++TFSPV K+ TV++ L++AA+
Sbjct: 793 VGCKWVYKVKRNSDGTVERYKARLVAKGFTQQEGIDYEDTFSPVAKLVTVKLLLALAAIK 852
Query: 2451 HWHLHQLDVHNA 2416
+W L Q+DV NA
Sbjct: 853 NWSLTQMDVTNA 864
Score = 67.4 bits (163), Expect(3) = 0.0
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFWGDSV 3506
TP+QN +VERKHQHILNVARSLMFQSN+P+++W D V
Sbjct: 475 TPEQNSVVERKHQHILNVARSLMFQSNVPAEYWSDCV 511
>gb|KYP37906.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1097
Score = 410 bits (1055), Expect(3) = 0.0
Identities = 201/346 (58%), Positives = 255/346 (73%)
Frame = -3
Query: 2416 FLNGDLHEDIYMKLPPGFVIEGELADSKNLVCKLHKSIYGLKQASRQWNFKLTSFLTTIG 2237
FL+GDLHE++YM PPG + N VCKL KS+YGLKQASRQWN KLTS L G
Sbjct: 755 FLHGDLHEEVYMTPPPGLTVSPH---QSNCVCKLVKSLYGLKQASRQWNAKLTSVLIDSG 811
Query: 2236 FVQSKSDYSLFTRHNQDGFVALLVYVDDILVGSPNLDLIQTVKDAIQNQFKVRDLGTLRY 2057
F QS +DYSLFT+ F A+LVYVDD+++ + I +K + +F ++DLG L+Y
Sbjct: 812 FKQSMADYSLFTKQFGAKFTAILVYVDDLVLAGNDPTEINYIKSLLDQKFTIKDLGQLKY 871
Query: 2056 FLGLEIARSSKGIQVCQRKYVLDILEDTGMLGCKPISTSVELNQKFSKTSSTFLSDPTIY 1877
FLG+E+ARSS GI + QRKY LD++EDTG+L KP + ++ + K KT T L+DPT Y
Sbjct: 872 FLGMEVARSSTGIALYQRKYALDLIEDTGLLASKPCKSPMDHSVKLHKTVGTPLTDPTQY 931
Query: 1876 RRLIGKLIYLSVSRPDITFGVHLLSQFMDKPTDEHMHAAYRILRYLKGSIGQGLFYPSVP 1697
RRL+G+LIYL+ +R DI+F V+ LSQFMD+PTD H AA RIL+Y+K + G+GLF+PS
Sbjct: 932 RRLLGRLIYLTNTRADISFSVNHLSQFMDQPTDVHYQAALRILKYVKNAPGKGLFFPSSS 991
Query: 1696 DLQLKAYCDSDWAACPDTRRSTTGFCIFIGNSLISWRSKKQATVSRSSAEAEYRALAQTS 1517
DL LK Y DSDWA+C DTRRS TGF F+G +LISW+SKKQATVS+SSAEAEYRALAQ++
Sbjct: 992 DLTLKGYSDSDWASCSDTRRSVTGFSFFLGPALISWKSKKQATVSKSSAEAEYRALAQST 1051
Query: 1516 CELVWLRYLLQDFGFCPDKPAIIFCDNQSAIHLTKNHIFHERTKHI 1379
CE W+ YLL DFG P ++FCDNQSA+H+ N +FHERTKHI
Sbjct: 1052 CEAQWISYLLHDFGLHNFHPIVLFCDNQSALHIASNPVFHERTKHI 1097
Score = 268 bits (685), Expect(3) = 0.0
Identities = 154/362 (42%), Positives = 210/362 (58%)
Frame = -1
Query: 3507 FSVLTAVYLINRTPSPYLANKSPYEILFKSPPNYSHLRVFGCLCYASTHSSHRTKFDPRA 3328
++V AV+LINR PS +L NK PYEI++ + P+ + ++VFGCL YA+T +R KFDPR
Sbjct: 431 YAVSHAVFLINRQPSSFLENKIPYEIIYNALPDLAGIKVFGCLAYATTLHHNRKKFDPRG 490
Query: 3327 KPYVFLGYPVGMKGYKILDFSTYDIYVSRNVQFVEHKFPFAQKVNIPSPVVPLPDVPTST 3148
+ VFLG+ +KG + D ++ + ++SR+V++ EH FPF LP P
Sbjct: 491 RRCVFLGFKPQVKGSILYDLNSRETFLSRHVEYFEHIFPF------------LPTSPLDL 538
Query: 3147 DEXXXXXXXXXXXXXXMTNGHTLGHQDSPNISHSPPQLHSPQTPNRHVSPVSDVSTHTPD 2968
+ HQ I P L + TP SPVS V
Sbjct: 539 TQTISLPR----------------HQPPLPIDTDPTPLSTNTTPTS--SPVSVVP----- 575
Query: 2967 LSPLHSXXXXXXXXXXPSYLRDYHCNLLTQPPTARSLSSVCTSHPITDHLTYSNLSSSYK 2788
P PSYL DYH LLT T S + + I +H++YSNLS S K
Sbjct: 576 --PPPFVQKSTRPRKLPSYLHDYHHTLLT---THNSPTISQPLYSIHNHISYSNLSPSQK 630
Query: 2787 SFALSISLTKDPLTYQEAIESDHWKQAINSELTVLIENGTWSITTLPPGNRAIGCKYVFK 2608
+F+LSIS K+P +Y EAI+ + WK AI +ELT L +N TW +T LPP + +GCK+VFK
Sbjct: 631 AFSLSISSIKEPNSYVEAIQDESWKTAIQTELTALEKNNTWILTPLPPNKQVVGCKWVFK 690
Query: 2607 TKFKLDGSVDKYKARLVAKGYTQREGFDYQETFSPVVKITTVRIFLSIAAMHHWHLHQLD 2428
KF DG+++++KARLVAKGYTQ EG DY +TFSPVVK+TTVR L++A +WH+HQLD
Sbjct: 691 LKFNSDGTIERHKARLVAKGYTQTEGLDYLDTFSPVVKMTTVRTLLAVATAKNWHIHQLD 750
Query: 2427 VH 2422
V+
Sbjct: 751 VN 752
Score = 60.8 bits (146), Expect(3) = 0.0
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -3
Query: 3616 TPQQNGIVERKHQHILNVARSLMFQSNLPSQFW 3518
TPQQNGIVERKHQHI+ VAR+L+ QSNLP FW
Sbjct: 397 TPQQNGIVERKHQHIMTVARALVMQSNLPKSFW 429