BLASTX nr result
ID: Rehmannia26_contig00034869
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00034869
(619 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 86 6e-15
emb|CAB75484.1| putative protein [Arabidopsis thaliana] 86 1e-14
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 84 2e-14
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia... 84 3e-14
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ... 84 3e-14
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 84 4e-14
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 82 2e-13
gb|EMJ05203.1| hypothetical protein PRUPE_ppa025711mg, partial [... 81 3e-13
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 81 3e-13
ref|XP_006405618.1| hypothetical protein EUTSA_v10028075mg [Eutr... 80 4e-13
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 80 4e-13
ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arab... 80 6e-13
ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617... 79 1e-12
gb|EMJ08972.1| hypothetical protein PRUPE_ppa026368mg, partial [... 79 1e-12
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 79 1e-12
ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein A... 78 2e-12
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers... 78 2e-12
ref|XP_002451109.1| hypothetical protein SORBIDRAFT_05g024215 [S... 77 3e-12
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 77 4e-12
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ... 77 5e-12
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 86.3 bits (212), Expect = 6e-15
Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Frame = +1
Query: 1 PESSRGNKLKERTWNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQ 180
P +SRG LK W + WK I K+K F W+ I L T +++RGM ID C CG+
Sbjct: 1040 PSTSRGPNLK--LWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGE 1097
Query: 181 EEETIEHLCFQCERAQVVWKLSPVQ-------------WFDTLHPTFSMKKWWHQLCDIK 321
+EET EHL + C+ + W +SP++ W ++L T +WW
Sbjct: 1098 KEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVESLLDTHKDTEWW------- 1150
Query: 322 DSIYNKRRIQLSVYLLWWL*KTRNTWIFQNTSWKEIDIVNRAMYEWQEF 468
L + W + RN W+F+ ++V RA+ EF
Sbjct: 1151 ---------ALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEF 1190
>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
Length = 851
Score = 85.5 bits (210), Expect = 1e-14
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Frame = +1
Query: 46 RCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERA 225
+ W + I KLKHFLWRI++ +LPT L RGM+IDP C C +E E+I H F C A
Sbjct: 666 KIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFA 725
Query: 226 QVVWKLSPVQWFDTLHPTFSMK-KWWHQLCDIKDSIYNKRRIQLSVYLLWWL*KTRNTWI 402
+ W+LS + + + +++ + L ++++ + + +LLW + K RN +
Sbjct: 726 TMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVV 785
Query: 403 FQNTSWKEIDIVNRAMYEWQEFSAISQIKMKERMPR 510
F N V RA E E+ +Q + R+P+
Sbjct: 786 FNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPK 821
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 84.3 bits (207), Expect = 2e-14
Identities = 56/162 (34%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
Frame = +1
Query: 19 NKLKERTWNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIE 198
N LKE+ W+ K+K FLWRI++ +LP A + RRGM IDP C+ICG E E+
Sbjct: 816 NGLKEQVWST----KSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGESTN 871
Query: 199 HLCFQCERAQVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLS-VYLLWW 375
H+ F C A+ VW LS V + S+ L ++K I ++ S ++LW
Sbjct: 872 HVLFTCSMARQVWALSGVPTPEFGFQNASIFANIQFLFELKKMILVPDLVKRSWPWVLWR 931
Query: 376 L*KTRNTWIFQNTSWKEIDIVNRAMYEWQE-FSAISQIKMKE 498
L K RN F ++ ++ + + + E F A SQI++ E
Sbjct: 932 LWKNRNKLFFDGITFCPLNSIVKIQEDTLEWFQAQSQIRVSE 973
>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
protein [Arabidopsis thaliana]
gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 343
Score = 84.0 bits (206), Expect = 3e-14
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 8/199 (4%)
Frame = +1
Query: 46 RCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERA 225
+ WK+ K+KHFLW++++ +L T LKRR ++ P C C QE+ET +HL F C A
Sbjct: 17 KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76
Query: 226 QVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLSVYLLWWL*KTRNTWIF 405
Q VW+ S + + +M+ L + + L++++LW L K+RN +F
Sbjct: 77 QQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVF 136
Query: 406 QNTSWKEIDIVNRA---MYEWQEFSAISQIKMKERMPRIR---PEDERKNCDRP--VQMV 561
Q S + + RA + EW++ + Q + +++ R P R RP +
Sbjct: 137 QQKSISWQNTLQRARNDVQEWEDTNTYVQ-SLNQQVHSSRHQQPTMARTKWQRPPSTWIK 195
Query: 562 GHYDIAISAIKTGKDKTGW 618
+YD A + +T K GW
Sbjct: 196 YNYDGAFNH-QTRNAKAGW 213
>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3184275|gb|AAC18922.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
H domain-containing protein [Arabidopsis thaliana]
Length = 365
Score = 84.0 bits (206), Expect = 3e-14
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 52 WKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERAQV 231
WK+ + K+KHFLWR +T +L T T L+ R + DPIC+ C EEETI H+ F C Q
Sbjct: 38 WKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQS 97
Query: 232 VWKLSPVQWFDTLHPTFSMKKWWHQLCDI-KDSIYNKRRIQLSVYLLWWL*KTRNTWIFQ 408
VW+ + + + P S + ++L + K N L +++W L K+RN ++FQ
Sbjct: 98 VWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQ 157
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 83.6 bits (205), Expect = 4e-14
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Frame = +1
Query: 19 NKLKERTWNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIE 198
N LKE+ W+ K+K FLWRI++ +LP A + RRGM IDP C++CG+E E+I
Sbjct: 1042 NGLKEKIWSTL----TSPKIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESIN 1097
Query: 199 HLCFQCERAQVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLS-VYLLWW 375
H+ F C A+ VW LS V S+ L ++K +I+ S ++LW
Sbjct: 1098 HVLFTCSLARQVWALSGVPTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWR 1157
Query: 376 L*KTRNTWIFQNTSW---KEIDIVNRAMYEW 459
L K R+ F+ T + K I+ + + EW
Sbjct: 1158 LWKNRDKLFFEGTIFSPLKSIEKIRDDVQEW 1188
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 81.6 bits (200), Expect = 2e-13
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Frame = +1
Query: 52 WKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERAQV 231
W++ I K+KHF+WR ++ +L T T L+ R + DP C+ C +ETI H+ F C AQV
Sbjct: 1389 WRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQV 1448
Query: 232 VWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLSV-------YLLWWL*KTR 390
VW+ + + L T ++++ +I+ + K+ L + +++W L K+R
Sbjct: 1449 VWRSANFSGSNRLCFTDNLEE------NIRLILQGKKNQNLPILNGLMPFWIMWRLWKSR 1502
Query: 391 NTWIFQNTS---WKEIDIVNRAMYEWQE 465
N ++FQ WK + EW E
Sbjct: 1503 NEYLFQQLDRFPWKVAQKAEQEATEWVE 1530
>gb|EMJ05203.1| hypothetical protein PRUPE_ppa025711mg, partial [Prunus persica]
Length = 534
Score = 80.9 bits (198), Expect = 3e-13
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Frame = +1
Query: 1 PESSRGNKLKERTWNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQ 180
P SSR L + W W + KL +F WR++ LPT L RR + P+C ICG+
Sbjct: 273 PSSSR--VLDKALWKLVWGSQMVPKLMNFWWRMVRGCLPTRDALFRRHLGTSPLCPICGE 330
Query: 181 EEETIEHLCFQCERAQVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLS- 357
E++EHL C Q+VW P+ + SM +W Q+ I S+ R+ +S
Sbjct: 331 FPESVEHLFLLCNWVQLVWFGGPLNYKINRQSITSMSEWMMQVLKISQSLGYDRKWLISQ 390
Query: 358 -VYLLWWL*KTRNTWIFQNTS 417
VY W + K+R + +F + S
Sbjct: 391 IVYTCWSIWKSRCSAVFDDIS 411
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 80.9 bits (198), Expect = 3e-13
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Frame = +1
Query: 31 ERTWNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCF 210
+ + WK + K+KHF WR +LPTA LKRR + D C+ CG+ E + HL F
Sbjct: 495 QTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLF 554
Query: 211 QCERAQVVWKLSPVQWFDTLHPTFS-MKKWWHQLCDIKDSIYNKRR--IQLSVYLLWWL* 381
QC ++ +W+ + ++ L P S M ++Q + + R + L ++ W +
Sbjct: 555 QCRVSKEIWEQAHIK----LCPGDSLMSNSFNQNLESIQKLNQSARKDVSLFPFIGWRIW 610
Query: 382 KTRNTWIFQNTSWKEIDIVNRAMYEWQEF-SAISQIKMKERMPRIRPEDERK 534
K RN IF N W D + +A+ + Q++ +++ + ++R P++ K
Sbjct: 611 KMRNDLIFNNKRWSIPDSIQKALIDQQQWKESLNCNEQQQRKPQLHDSHNNK 662
>ref|XP_006405618.1| hypothetical protein EUTSA_v10028075mg [Eutrema salsugineum]
gi|557106756|gb|ESQ47071.1| hypothetical protein
EUTSA_v10028075mg [Eutrema salsugineum]
Length = 343
Score = 80.5 bits (197), Expect = 4e-13
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Frame = +1
Query: 28 KERTWN---RCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIE 198
++R +N WK+ K+K FLWR + + P L RRG+++D CKICG ETI
Sbjct: 54 RQRNFNWQKNIWKLQTVPKVKQFLWRAVVEAFPVGVELVRRGIQVDFACKICG-NPETIT 112
Query: 199 HLCFQCERAQVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLSVYLLWWL 378
H+ C+ A+ VW L+P++ L+ + H L + L ++ W L
Sbjct: 113 HVLRDCQLARKVWNLAPLRTQSHLNTVLCLDFLAHILSMVSLPPIEVSTTSLPAWICWNL 172
Query: 379 *KTRNTWIFQNTSWKEIDIVNRAMYE---WQE 465
RN IF +T++ +I+ +A+ + WQE
Sbjct: 173 WTPRNHRIFSDTTYSAYEIITKAICDARAWQE 204
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 80.5 bits (197), Expect = 4e-13
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 8/146 (5%)
Frame = +1
Query: 52 WKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERAQV 231
WK+ KL+HFLW+I++ +P + L++RG+ D C CG EE+I H FQC A+
Sbjct: 829 WKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQ 888
Query: 232 VWKLSPVQWFDTLHPTFSM-----KKWWHQLCDIKDSIYNKRRIQLSVYLLWWL*KTRNT 396
+W LS + + P+ S+ +W + + Y +++W++ K RN
Sbjct: 889 IWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPY--------PWIIWYIWKARNE 940
Query: 397 WIFQNTSWKEIDIVNRAMYE---WQE 465
+F+N ++I+ A+ E WQE
Sbjct: 941 KVFENVDKDPMEILLLAVKEAQSWQE 966
>ref|XP_002865522.1| hypothetical protein ARALYDRAFT_917523 [Arabidopsis lyrata subsp.
lyrata] gi|297311357|gb|EFH41781.1| hypothetical protein
ARALYDRAFT_917523 [Arabidopsis lyrata subsp. lyrata]
Length = 352
Score = 79.7 bits (195), Expect = 6e-13
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Frame = +1
Query: 46 RCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERA 225
+ W ++I KLKHFLWR + ++ A L+RR M ++P C C E ET +H F C
Sbjct: 23 KIWNLNIVPKLKHFLWRYASKAIGIAENLRRRNMNVNPYCSRCCNELETNDHTLFSCPSI 82
Query: 226 QVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIY-NKRRIQLSVYLLWWL*KTRNTWI 402
+ +W+ + + D + L D+ D+ + +K L +LLW + KTRN I
Sbjct: 83 RPIWRAAGIPTQDLWDRDKPFEGKIRFLLDLHDNKHIDKVCRYLPFWLLWRIWKTRNDLI 142
Query: 403 FQNTSWKEIDIVNRAMYEWQEF 468
F + K DIV +A+ + +E+
Sbjct: 143 FNHKVTKGEDIVGQALIDTKEW 164
>ref|XP_006470496.1| PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
Length = 440
Score = 78.6 bits (192), Expect = 1e-12
Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Frame = +1
Query: 40 WNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCE 219
WN+ W++++ +K+KHF+WR +T LPT L ++ +++ P C C E+I H+ QC
Sbjct: 123 WNQLWRLEVPSKVKHFMWRALTDVLPTTENLLKKYVEVPPACITCHASSESICHILLQCP 182
Query: 220 RAQVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLSVYLLWWL*KTRNTW 399
A+ W S + +F ++ W L + Y+ + QL+V + W L + RN
Sbjct: 183 FARTCWMTSSIGFFG---DGSNLLLWLEALF----NRYSLEQTQLAVMICWSLWQNRNDM 235
Query: 400 IFQNTSWKEIDIVNRA---MYEWQ 462
+++ + ++N A +++WQ
Sbjct: 236 VWRGKTSGVQQLLNSAGHFLFQWQ 259
>gb|EMJ08972.1| hypothetical protein PRUPE_ppa026368mg, partial [Prunus persica]
Length = 1060
Score = 78.6 bits (192), Expect = 1e-12
Identities = 50/161 (31%), Positives = 74/161 (45%)
Frame = +1
Query: 4 ESSRGNKLKERTWNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQE 183
E S L + W + W + I NK+K FLWR LP +L R + PIC C ++
Sbjct: 733 EPSARVDLNSKFWKKIWALKIPNKIKFFLWRCAWDFLPCGQILFNRKIAPTPICPKCHRK 792
Query: 184 EETIEHLCFQCERAQVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLSVY 363
E++ H + CE A+ VW+ S + S ++ WH L + L Y
Sbjct: 793 AESVLHAVWLCEAAKEVWRNSAWGNVCEVWRVNSFRELWHAL----QLSSSGEEQGLFAY 848
Query: 364 LLWWL*KTRNTWIFQNTSWKEIDIVNRAMYEWQEFSAISQI 486
L W L RN++IF+ S I +++R QEFS + I
Sbjct: 849 LCWGLWNRRNSFIFEGKSETAIQLLSRMTKLAQEFSDANNI 889
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 78.6 bits (192), Expect = 1e-12
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Frame = +1
Query: 52 WKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERAQV 231
WK+ I K+K+ LWR I+ +LPT + L RGM IDP C C EEETI H+ F C A
Sbjct: 1363 WKLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAAS 1422
Query: 232 VWKLSPVQWFDTLHPTFSM---KKWWHQLCDIKDSIYNKRRIQLSVYLLWWL*KTRNTWI 402
+W LS W TFS + + ++ N + +L+W L K RN +
Sbjct: 1423 IWGLSNFPWLP--GHTFSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLV 1480
Query: 403 FQNTSWKEIDIVNRAMYEWQEF 468
F S +V + E E+
Sbjct: 1481 FNKFSESCSRVVTQTEAEVNEW 1502
>ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 420
Score = 77.8 bits (190), Expect = 2e-12
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 6/172 (3%)
Frame = +1
Query: 4 ESSRGNKLK----ERTWNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKI 171
+ SRG+ +TW + WK+ + K+K F+WR++ LPT L ++ + +C
Sbjct: 134 DQSRGSSSSPAGSNKTWKQVWKVRVLPKVKSFVWRLMRNILPTKVALSKKICMEEQLCPF 193
Query: 172 CGQEEETIEHLCFQCERAQVVWKLSPVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQ 351
C E ET HL +C A + +SP+ H +M++W + D + +++
Sbjct: 194 CRTENETALHLFKECSGAACMLIISPLGLRARNHGANNMEEWVVGMMD----VLTTGQVE 249
Query: 352 LSVYLLWWL*KTRNTWIFQNTSWKEIDIVNRAMYEWQEFSAI--SQIKMKER 501
+ LLW L RN ++Q TS+ I+ V +M QE+ + + K+K R
Sbjct: 250 MFFMLLWALWVERNNMVWQGTSFDPINTVTWSMLLLQEYQNLHPCETKLKRR 301
>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 77.8 bits (190), Expect = 2e-12
Identities = 45/174 (25%), Positives = 90/174 (51%), Gaps = 4/174 (2%)
Frame = +1
Query: 52 WKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERAQV 231
WK+ + K+K FLW++++ ++P LL RGMK+D C+ CG E E+I+H+ F C +
Sbjct: 895 WKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQ 954
Query: 232 VWKLS----PVQWFDTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLSVYLLWWL*KTRNTW 399
VW +S P+ F+ ++ + ++K + +R +++W + K RN +
Sbjct: 955 VWAMSNIHVPLLGFECGSVYANLYHFLINRDNLKWPVELRRSFP---WIIWRIWKNRNLF 1011
Query: 400 IFQNTSWKEIDIVNRAMYEWQEFSAISQIKMKERMPRIRPEDERKNCDRPVQMV 561
F+ + ++ + + + +++ A +Q+ KER + D++ R V V
Sbjct: 1012 FFEGKRFTVLETILKVRKDVEDWFA-AQVVEKERRAEVGQSDQQVFSPRNVSPV 1064
>ref|XP_002451109.1| hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
gi|241936952|gb|EES10097.1| hypothetical protein
SORBIDRAFT_05g024215 [Sorghum bicolor]
Length = 357
Score = 77.4 bits (189), Expect = 3e-12
Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 7/171 (4%)
Frame = +1
Query: 10 SRGN----KLKERTWNRCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICG 177
SRGN + + W W M I +K+K F WR+ SLPT T+LK + + CKICG
Sbjct: 15 SRGNCSNVQRIQNEWKHLWSMKIPSKIKVFCWRLAHNSLPTGTILKNKNLAATTNCKICG 74
Query: 178 QEEETIEHLCFQCERAQVVWKLSPVQWFDTLHPT-FSMKKWW--HQLCDIKDSIYNKRRI 348
EE+T H QC ++ VW L D L FS K W + C+I + + RI
Sbjct: 75 AEEDTWIHSLLQCNISKCVWVLMDEDLLDLLASLHFSDPKHWISYICCNIPKA--DGVRI 132
Query: 349 QLSVYLLWWL*KTRNTWIFQNTSWKEIDIVNRAMYEWQEFSAISQIKMKER 501
++ + +W+ R I + I+ +EF + +I KE+
Sbjct: 133 LVTCWAIWY---ARRKAIHDRIFQSPLSIMMMTNRLIEEFEFVQEIDFKEK 180
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 77.0 bits (188), Expect = 4e-12
Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Frame = +1
Query: 46 RCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERA 225
R W + I KLKHFLWR ++ +L T L RGM+IDPIC C +E E+I H F C A
Sbjct: 1201 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFA 1260
Query: 226 QVVWKLSPVQWF-DTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLSVYLLWWL*KTRNTWI 402
+ W LS + L + + L ++D+ + L V+L+W + K RN +
Sbjct: 1261 TMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVV 1320
Query: 403 FQNTSWKEIDIVNRAMYEWQEFSAISQIKMKERMP 507
F V A E ++ +Q K P
Sbjct: 1321 FNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSP 1355
>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
reverse transcriptase [Arabidopsis thaliana]
gi|332641254|gb|AEE74775.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 484
Score = 76.6 bits (187), Expect = 5e-12
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 1/155 (0%)
Frame = +1
Query: 46 RCWKMDIKNKLKHFLWRIITCSLPTATLLKRRGMKIDPICKICGQEEETIEHLCFQCERA 225
R W + I KLKHFLWR ++ +L T L RGM+IDP C C +E E+I H F C A
Sbjct: 161 RIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFA 220
Query: 226 QVVWKLSPVQWF-DTLHPTFSMKKWWHQLCDIKDSIYNKRRIQLSVYLLWWL*KTRNTWI 402
+ W+LS + L + + L ++D+ + L V+L+W + K RN +
Sbjct: 221 TMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVV 280
Query: 403 FQNTSWKEIDIVNRAMYEWQEFSAISQIKMKERMP 507
F V A E ++ +Q K P
Sbjct: 281 FNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSP 315