BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00029975
         (502 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    48   9e-09
gb|AFK38936.1| unknown [Medicago truncatula]                           49   2e-06
ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    47   4e-06

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 48.1 bits (113), Expect(2) = 9e-09
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 100  GMSITNRVWYISPLRLDKKCLSASSFRTLYWNIL-SGASIEVAVLFGAIAWTIWKTRNKM 276
            G   ++R WYISPLR+    + A SFR    ++L +    E   LF  I W IW  RNK 
Sbjct: 1108 GCDESSRAWYISPLRIHTGNIEAGSFRIWVESLLDTHKDTEWWALFWMICWNIWLGRNKW 1167

Query: 277  CFENAK 294
             FE  K
Sbjct: 1168 VFEKKK 1173



 Score = 37.0 bits (84), Expect(2) = 9e-09
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 14   SNLAKRGLQIDPICPLCGDAVESLNHLMLEC 106
            +N+ KRG+ ID  CP CG+  E+  HL+  C
Sbjct: 1079 TNMRKRGMNIDGACPRCGEKEETTEHLIWGC 1109


>gb|AFK38936.1| unknown [Medicago truncatula]
          Length = 297

 Score = 48.9 bits (115), Expect(2) = 2e-06
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +2

Query: 2   VPTKSNLAKRGLQIDPICPLCGDAVESLNHLMLEC 106
           +PT+ NL +RG+ +D +CPLC DA ES NHL + C
Sbjct: 9   IPTRCNLRRRGVVLDTVCPLCFDADESSNHLFMAC 43



 Score = 28.1 bits (61), Expect(2) = 2e-06
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 88  SSHVGMS--ITNRVWYISPLRLDKKCLSASSFRTLYWNILSGASIEVAVLFGAIAWTIWK 261
           S+H+ M+  +T +VW+ SPL       +  +     W  LS        LF    W IW 
Sbjct: 36  SNHLFMACPMTLQVWFASPLGFQPPPQTDLNAWLQSW--LSAKEPLAVQLFCVCLWKIWF 93

Query: 262 TRNKMCFENAKF 297
            RN+  F    F
Sbjct: 94  FRNQAIFNQVVF 105


>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 46.6 bits (109), Expect(2) = 4e-06
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 2   VPTKSNLAKRGLQIDPICPLCGDAVESLNHLMLEC 106
           +PT+ NL +RG+ +D +CPLC DA ES NH  + C
Sbjct: 284 IPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMAC 318



 Score = 29.6 bits (65), Expect(2) = 4e-06
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 109 ITNRVWYISPLRLDKKCLSASSFRTLYWNILSGASIEVAVLFGAIAWTIWKTRNKMCFEN 288
           +T +VW+ SPL       +  +   L W  LS        LF    W IW  RN++ F  
Sbjct: 320 MTLQVWFASPLGFQPPPQTDLNAWLLSW--LSAKEPLAVQLFCVCLWKIWFFRNQVIFNQ 377

Query: 289 AKF 297
             F
Sbjct: 378 VVF 380