BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00029230
         (1259 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   329   2e-87
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   303   1e-79
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   302   2e-79
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   302   2e-79
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           300   1e-78
ref|XP_006487001.1| PREDICTED: RNA pseudouridine synthase 4, mit...   298   4e-78
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit...   298   4e-78
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   296   1e-77
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   296   1e-77
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   292   2e-76
gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus...   289   1e-75
gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   289   1e-75
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   289   2e-75
ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit...   286   1e-74
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   286   1e-74
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   285   3e-74
ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatul...   284   6e-74
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   279   2e-72
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   270   7e-70
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   270   7e-70

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  329 bits (843), Expect = 2e-87
 Identities = 165/240 (68%), Positives = 195/240 (81%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRDSSGIL+MGRTQ S TILHSIFREKTFGASN D+    RI+Q++Y+ALVIGSPRR  
Sbjct: 236  LDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPR 295

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            GLIS PL KVVVD+GKSERIT+VDN  T+S QH+ TEYRVI SS  GYTWLELSPLTGRK
Sbjct: 296  GLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRK 355

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVLGTPIVGDYKYGWQAH+K  Q F S  +   D+ ++  K +  GL+LE+G
Sbjct: 356  HQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRKTHPFGLDLESG 415

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLLN 529
            SI DKQP LHLHCK+M+LPN+SLALQ  ++ +    +++ES+   APLP+HMQRSWD+LN
Sbjct: 416  SILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQRSWDILN 475


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  303 bits (776), Expect = 1e-79
 Identities = 155/240 (64%), Positives = 184/240 (76%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRD SG+LVMGRTQLS + LHSIFREKTF + N D+    RI+QKKY+ALVIG PRR  
Sbjct: 227  LDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSG 286

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G+IS PL K+V+DNGKSERIT++ +    S Q++ TEYR+I SS  GYTWLELSPLTGRK
Sbjct: 287  GIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRK 346

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAE LGTPIVGDYKYGWQAH+KL       S L    ++ + K +   L L NG
Sbjct: 347  HQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLGVQIPRQKPDPFNLRLGNG 406

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIISN----QMESIRLDAPLPAHMQRSWDLLN 529
            SISDKQP LHLHCKEM+LPNISLALQR +++S+     +ESI+L APLP HMQ+SWD L+
Sbjct: 407  SISDKQPHLHLHCKEMVLPNISLALQRAQVVSDTDLVDVESIKLVAPLPFHMQKSWDCLS 466


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  302 bits (773), Expect = 2e-79
 Identities = 153/240 (63%), Positives = 188/240 (78%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRDSSGILVMGRTQ S T+LHSIFREKTF AS  D     RI+Q+ Y+ALV+G+PR  +
Sbjct: 254  LDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKRILQRWYWALVVGTPRCSK 313

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G+IS PL KVVVDNGKS+RITVV+N+  +S QH+ T Y+VI  S  GYTWL+LSPLTGRK
Sbjct: 314  GVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRK 373

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVLGTPIVGDYKYGWQ H+K  Q+  S  +   +D+  K K    GL+LE+G
Sbjct: 374  HQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNKDSNDETPKEKTLHFGLDLESG 433

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLLN 529
            SI +KQP LHLHCKEM LPN+S A+Q+ ++ S    +++ES++L APLP+HMQRSWD+LN
Sbjct: 434  SILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLESLKLVAPLPSHMQRSWDVLN 493


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  302 bits (773), Expect = 2e-79
 Identities = 155/240 (64%), Positives = 184/240 (76%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRD SG+LVMGRTQLS + LHSIFREKTF + N D+    RI+QKKY+ALVIG PRR  
Sbjct: 227  LDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSG 286

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G+IS PL K+V+DNGKSERIT++ +    S Q++ TEYR+I SS  GYTWLELSPLTGRK
Sbjct: 287  GIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRK 346

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAE LGTPIVGDYKYGWQAH+KL       S L    ++ + K +   L L NG
Sbjct: 347  HQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLVVEIPRQKPDPFNLRLGNG 406

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIISN----QMESIRLDAPLPAHMQRSWDLLN 529
            SISDKQP LHLHCKEM+LPNISLALQR +++S+     +ESI+L APLP HMQ+SWD L+
Sbjct: 407  SISDKQPHLHLHCKEMVLPNISLALQRAQVVSDADLVDVESIKLVAPLPFHMQKSWDCLS 466


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  300 bits (767), Expect = 1e-78
 Identities = 154/240 (64%), Positives = 184/240 (76%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDVPGSDRIV-QKKYYALVIGSPRRRE 1057
            LDRD SGILVMGRTQ S T+LHSIFREKTFGASND     +IV Q++Y+A VIGSPR   
Sbjct: 230  LDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVKGKIVLQRRYWAFVIGSPRHPN 289

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            GLIS PL KVV+DNGKS+RITVV+ +HTLS QH+ T+Y+VI SS  GYTWLELSPLTGRK
Sbjct: 290  GLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYKVIGSSSHGYTWLELSPLTGRK 349

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVLGTP+VGDYKYGWQAH+          D K  + + K K+   GL ++NG
Sbjct: 350  HQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDNKCIEVLPKRKNLPFGLNMDNG 409

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLLN 529
            SIS+K P LHLHCK+M+LPNIS  LQ  +  S    +++E ++LDAPLP++MQRSW L N
Sbjct: 410  SISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRLERLKLDAPLPSYMQRSWHLTN 469


>ref|XP_006487001.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X3 [Citrus sinensis]
          Length = 275

 Score =  298 bits (762), Expect = 4e-78
 Identities = 150/240 (62%), Positives = 188/240 (78%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRDSSGILVMGRTQ S T+LHSIFREKTF AS  D     +I+Q+ Y+ALV+G+PR  +
Sbjct: 35   LDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKKILQRWYWALVVGTPRCSK 94

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G+IS PL KVVVDNGKS+RITVV+N+  +S QH+ T Y+VI  S  GYTWL+LSPLTGRK
Sbjct: 95   GVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRK 154

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVLGTPIVGDYKYGWQ H+K  Q+  S      ++++ K K    GL+LE+G
Sbjct: 155  HQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESG 214

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLLN 529
            SI +KQP LHLHCKEM LPN+S A+Q+ ++ S    +++E+++L APLP+HMQRSWD+LN
Sbjct: 215  SILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 274


>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
            PREDICTED: RNA pseudouridine synthase 4,
            mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 362

 Score =  298 bits (762), Expect = 4e-78
 Identities = 150/240 (62%), Positives = 188/240 (78%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRDSSGILVMGRTQ S T+LHSIFREKTF AS  D     +I+Q+ Y+ALV+G+PR  +
Sbjct: 122  LDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDNEKKILQRWYWALVVGTPRCSK 181

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G+IS PL KVVVDNGKS+RITVV+N+  +S QH+ T Y+VI  S  GYTWL+LSPLTGRK
Sbjct: 182  GVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQVIKPSCHGYTWLKLSPLTGRK 241

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVLGTPIVGDYKYGWQ H+K  Q+  S      ++++ K K    GL+LE+G
Sbjct: 242  HQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSKDSNEEIPKEKTLHFGLDLESG 301

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLLN 529
            SI +KQP LHLHCKEM LPN+S A+Q+ ++ S    +++E+++L APLP+HMQRSWD+LN
Sbjct: 302  SILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKLETLKLVAPLPSHMQRSWDVLN 361


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  296 bits (758), Expect = 1e-77
 Identities = 148/240 (61%), Positives = 189/240 (78%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASND-VPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRDSSGILVMGRTQ S T+LHSIFREKTFGASND +  + RI+Q++Y+ALVIGSPR+R+
Sbjct: 243  LDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRK 302

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            GLIS PL KVVVDNGKS+RIT+V+++ TL  QH+ T+Y+VI S   GYTWLEL+PLTGRK
Sbjct: 303  GLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPCPGYTWLELTPLTGRK 362

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVL TPIVGDYKYGWQ H+       S ++   D++  K K+    L +E+G
Sbjct: 363  HQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFPKRKNLPFDLNMESG 422

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLLN 529
            S+S+K P LHLHCK+M+LPN++LALQ  ++ S    +++ES+ L A LP+ MQRSW++ N
Sbjct: 423  SVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSDLSELESLELVAALPSFMQRSWNITN 482


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  296 bits (758), Expect = 1e-77
 Identities = 153/241 (63%), Positives = 191/241 (79%), Gaps = 6/241 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRDSSGILVMGRTQ ST +LHS+FREKTF ASN D+    RI+Q+KY+ALVIGSPRR++
Sbjct: 297  LDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQK 356

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G+IS PL KVVVD+GKS+RITVV+N  + S QH+ T+YRV+ SS  GY WLELSP+TGRK
Sbjct: 357  GIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELSPITGRK 415

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQY-FNSASDLKRDDKMTKFKHNIIGLELEN 700
            HQLRVHCAEVLGTPIVGDYKYGWQ H+K  Q  F +   +  ++ + K K    G++LE+
Sbjct: 416  HQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCK-KILPFGIDLES 474

Query: 699  GSISDKQPFLHLHCKEMILPNISLALQRGRIISN----QMESIRLDAPLPAHMQRSWDLL 532
            GSIS+K P LHLHCK+M+LP++S AL+  +  SN     ++SI LDAPLP++MQRSWD+L
Sbjct: 475  GSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSWDIL 534

Query: 531  N 529
            N
Sbjct: 535  N 535


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  292 bits (747), Expect = 2e-76
 Identities = 152/239 (63%), Positives = 186/239 (77%), Gaps = 5/239 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDVPGSDR-IVQKKYYALVIGSPRRRE 1057
            LDRD SGILVMGRTQ S T+LH+IFREKT  ASND  G+ R I+Q+KY+ALVIGSPRR +
Sbjct: 232  LDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPK 291

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            GLIS PL KVVVDNGKS+RITVV+N+  LS QH+ T+YRVI SS  G+TWLELSPLTGRK
Sbjct: 292  GLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLTGRK 350

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVLGTPIVGDYKY WQAH+   Q   S  +   +DK    K     L+L++G
Sbjct: 351  HQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSG 410

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLL 532
            SIS+K P LHLHCK+M+LP++S ALQ  ++ S    +Q+ S++ DAPLP +M++SWD+L
Sbjct: 411  SISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDIL 469


>gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
          Length = 432

 Score =  289 bits (740), Expect = 1e-75
 Identities = 150/237 (63%), Positives = 183/237 (77%), Gaps = 4/237 (1%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDVPGSDRIVQKKYYALVIGSPRRREG 1054
            LDRD SGILVMGRTQ STT+LHSIFREKT  A +D     RI+Q++Y+ALV+G PR  +G
Sbjct: 194  LDRDCSGILVMGRTQTSTTVLHSIFREKTSRALDDTEEEKRILQRRYWALVLGRPRCSKG 253

Query: 1053 LISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRKH 874
            L++  L KVVVDNGKS+RITVVDN+ +LS QH+ TEYRVI+SS  GYTWLELSPLTGRKH
Sbjct: 254  LVTASLGKVVVDNGKSDRITVVDNSTSLSSQHAITEYRVIASSSQGYTWLELSPLTGRKH 313

Query: 873  QLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENGS 694
            QLRVHCAEVLGTPIVGDYKYGWQAH+K G +  S  +   ++ + K +    GL L NGS
Sbjct: 314  QLRVHCAEVLGTPIVGDYKYGWQAHRKWGNFDLSNVEDSCEEHL-KEETLPFGLNLNNGS 372

Query: 693  ISDKQPFLHLHCKEMILPNISLALQRGRIISN----QMESIRLDAPLPAHMQRSWDL 535
            IS+ +P LHLHCK+++LPNIS ALQ  +  SN    Q+E ++L A LP +MQRSWD+
Sbjct: 373  ISENRPRLHLHCKKIVLPNISEALQNVQSFSNCDLSQVEGLQLVADLPPYMQRSWDI 429


>gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  289 bits (740), Expect = 1e-75
 Identities = 147/240 (61%), Positives = 188/240 (78%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASND-VPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRDSSGILVMGRTQ S T+LHSIFREKTFGASND +  + RI+Q++Y+ALVIGSPR+R+
Sbjct: 243  LDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRK 302

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            GLIS PL KVVVDNGKS+RIT+V+++ TL  QH+ T+Y+VI S    YTWLEL+PLTGRK
Sbjct: 303  GLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVIGSPC--YTWLELTPLTGRK 360

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVL TPIVGDYKYGWQ H+       S ++   D++  K K+    L +E+G
Sbjct: 361  HQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFPKRKNLPFDLNMESG 420

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLLN 529
            S+S+K P LHLHCK+M+LPN++LALQ  ++ S    +++ES+ L A LP+ MQRSW++ N
Sbjct: 421  SVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSDLSELESLELVAALPSFMQRSWNITN 480


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
            arietinum]
          Length = 458

 Score =  289 bits (739), Expect = 2e-75
 Identities = 150/241 (62%), Positives = 184/241 (76%), Gaps = 6/241 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDVPGSDRIVQKKYYALVIGSPRRREG 1054
            LDRD SGILVMGRTQ ST +LHSIFR+KT  AS+      RI+Q++Y+ALVIG PRR  G
Sbjct: 218  LDRDCSGILVMGRTQTSTVVLHSIFRDKTSRASDHNDTEKRILQRRYWALVIGRPRRSGG 277

Query: 1053 LISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRKH 874
            LI+ PL KVVVDNGKS+RIT+V+N+  +S QH+ TEYRV+ SS  GYTWLELSPLTGRKH
Sbjct: 278  LITSPLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEYRVLGSSSDGYTWLELSPLTGRKH 337

Query: 873  QLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENGS 694
            QLRVHCAEVLGTPIVGDYKYGWQAHKK G +F+  +     +++ K +    GL L  GS
Sbjct: 338  QLRVHCAEVLGTPIVGDYKYGWQAHKKWG-HFDLCNLEDSTEELLKEETLPFGLNLNKGS 396

Query: 693  ISDKQPFLHLHCKEMILPNISLALQRGRIIS------NQMESIRLDAPLPAHMQRSWDLL 532
            ISDK P LHLHCK++ILPNIS ALQ  + +S      + +E+++L+A LP +MQRSWD+ 
Sbjct: 397  ISDKHPRLHLHCKQIILPNISQALQDVQSLSASNCDLSVVEALKLEAELPPYMQRSWDVT 456

Query: 531  N 529
            N
Sbjct: 457  N 457


>ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 429

 Score =  286 bits (733), Expect = 1e-74
 Identities = 147/244 (60%), Positives = 182/244 (74%), Gaps = 9/244 (3%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDVPGSDRIVQKKYYALVIGSPRRREG 1054
            LDRD SGILVMGRT  STT+LHSIFREKT  AS+D+    RI+Q++Y+ALV+G PRR +G
Sbjct: 191  LDRDCSGILVMGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKG 250

Query: 1053 LISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRKH 874
            L++  L KVVVDNG+S+RIT+VDN+  +S QH+ TEYRVI+SS  GYTWLEL+PLTGRKH
Sbjct: 251  LVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKH 310

Query: 873  QLRVHCAEVLGTPIVGDYKYGWQAHKKLGQY-----FNSASDLKRDDKMTKFKHNIIGLE 709
            QLRVHCAEVLGTPIVGDYKYGWQAH+K G +      +S  +L  ++K+        GL 
Sbjct: 311  QLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEKLP------FGLN 364

Query: 708  LENGSISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSW 541
            L  GSIS+  P LHLHCK+M+LPNIS ALQ  +  S    + +E + L A LP +MQRSW
Sbjct: 365  LNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSW 424

Query: 540  DLLN 529
            D+ N
Sbjct: 425  DVTN 428


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 427

 Score =  286 bits (733), Expect = 1e-74
 Identities = 147/244 (60%), Positives = 182/244 (74%), Gaps = 9/244 (3%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDVPGSDRIVQKKYYALVIGSPRRREG 1054
            LDRD SGILVMGRT  STT+LHSIFREKT  AS+D+    RI+Q++Y+ALV+G PRR +G
Sbjct: 189  LDRDCSGILVMGRTHTSTTVLHSIFREKTSRASDDIGKEKRILQRRYWALVLGCPRRPKG 248

Query: 1053 LISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRKH 874
            L++  L KVVVDNG+S+RIT+VDN+  +S QH+ TEYRVI+SS  GYTWLEL+PLTGRKH
Sbjct: 249  LVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKH 308

Query: 873  QLRVHCAEVLGTPIVGDYKYGWQAHKKLGQY-----FNSASDLKRDDKMTKFKHNIIGLE 709
            QLRVHCAEVLGTPIVGDYKYGWQAH+K G +      +S  +L  ++K+        GL 
Sbjct: 309  QLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELLNEEKLP------FGLN 362

Query: 708  LENGSISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSW 541
            L  GSIS+  P LHLHCK+M+LPNIS ALQ  +  S    + +E + L A LP +MQRSW
Sbjct: 363  LNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCDLSLVEELELVADLPPYMQRSW 422

Query: 540  DLLN 529
            D+ N
Sbjct: 423  DVTN 426


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  285 bits (729), Expect = 3e-74
 Identities = 147/242 (60%), Positives = 189/242 (78%), Gaps = 7/242 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGAS-NDVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRDSSGILVMGRTQ+S TILHS+FRE+T  AS +DV    RI+QK+Y+ALVIGSPRR +
Sbjct: 237  LDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRPK 296

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G+I  PL KVVVD+GKS+RITV DN+  +S Q + TEY+VI ++  GYTWLELSPLTGRK
Sbjct: 297  GMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELSPLTGRK 356

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKR--DDKMTKFKHNIIGLELE 703
            HQLRVHCAEVLGTPIVGDYKYGWQAH++        SDLK+  +DK  +      GL ++
Sbjct: 357  HQLRVHCAEVLGTPIVGDYKYGWQAHRRWQHL--PESDLKKSSNDKCPEENMLPFGLNMD 414

Query: 702  NGSISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDL 535
            +GSIS K+P LHLHC+EMI PN+S ALQ  ++ +    ++++S+ + APLP++MQ+SWD+
Sbjct: 415  SGSISAKRPRLHLHCREMIFPNVSQALQNLQLSTDHDLSKLKSLEVVAPLPSYMQKSWDI 474

Query: 534  LN 529
            +N
Sbjct: 475  MN 476


>ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501934|gb|AES83137.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 430

 Score =  284 bits (726), Expect = 6e-74
 Identities = 148/243 (60%), Positives = 187/243 (76%), Gaps = 8/243 (3%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDVPGSDRIV-QKKYYALVIGSPRRRE 1057
            LDRD SGILVMGRT+ ST +LHSIFREKT  ASN+   +++I+ Q++Y+ALV+G PRR  
Sbjct: 189  LDRDCSGILVMGRTKTSTALLHSIFREKTSRASNEENDTEKIILQRRYWALVLGCPRRSG 248

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G+++ PL KVVVDNGKS+RIT+VDN+  LS QH+ TEYRVISSS  G+TWLELSPLTGRK
Sbjct: 249  GVVNAPLGKVVVDNGKSDRITIVDNSALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRK 308

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQY-FNSASDLKRDDKMTKFKHNIIGLELEN 700
            HQLRVHCAEVLGTPIVGDYKYG QAHKK GQ+ F++  D    ++  K +    GL L  
Sbjct: 309  HQLRVHCAEVLGTPIVGDYKYGRQAHKKWGQFDFSNLED--STEEHLKEEALPFGLNLNK 366

Query: 699  GSISDKQPFLHLHCKEMILPNISLALQRGRIISNQ------MESIRLDAPLPAHMQRSWD 538
            GSISDK P LHLHCK+++LPNIS ALQ  + +S+       +ES+ L+A LP +M++SW+
Sbjct: 367  GSISDKHPRLHLHCKQIVLPNISQALQNVQSVSDSSYDLSAVESLELEADLPPYMKKSWE 426

Query: 537  LLN 529
            + N
Sbjct: 427  VTN 429


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  279 bits (713), Expect = 2e-72
 Identities = 142/240 (59%), Positives = 184/240 (76%), Gaps = 5/240 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASNDV-PGSDRIVQKKYYALVIGSPRRRE 1057
            LDRD SGILVMGRTQ S T+LHS+FREKTFGAS+DV   +  I+Q++Y ALVIGSPR++E
Sbjct: 226  LDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKHAKSILQRRYLALVIGSPRQQE 285

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            GLISVPL KVVVDNGKS+RIT+++    L  QH+ T+Y+VI SS  G+TWLEL PLTGRK
Sbjct: 286  GLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYKVIGSSCPGFTWLELIPLTGRK 345

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVLGTPIVGDYKYGW+ HK       S ++   +++ +K K+    L +++G
Sbjct: 346  HQLRVHCAEVLGTPIVGDYKYGWRTHKDWKPVAWSKTECHSNEERSKRKNLPFDLNMDSG 405

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLLN 529
            SI +K   LHLH K+M+LPN+SLALQ  ++ +    + +ESI L AP+P++MQ+SWD+ N
Sbjct: 406  SIDEKNLRLHLHSKQMVLPNVSLALQNVKLHAECDLSGLESIELVAPMPSYMQKSWDITN 465


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
            gi|548850328|gb|ERN08832.1| hypothetical protein
            AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  270 bits (691), Expect = 7e-70
 Identities = 141/241 (58%), Positives = 182/241 (75%), Gaps = 6/241 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN--DVPGSDRIVQKKYYALVIGSPRRR 1060
            LD+DSSGILVMGRTQ STT+LHSIFR+KT GAS   D+  S  I+++KY+ALVIG+P+  
Sbjct: 219  LDQDSSGILVMGRTQESTTLLHSIFRDKTCGASFNVDIKNSKIILKRKYWALVIGNPQPS 278

Query: 1059 EGLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGR 880
            EGLIS PL K+++D+GKSERITV +++   S +H+ TEYRV+ SS  G+TWLEL P TGR
Sbjct: 279  EGLISAPLSKLLLDDGKSERITVSEDSKNKSARHAITEYRVLRSSGHGFTWLELYPRTGR 338

Query: 879  KHQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELEN 700
            KHQLRVHCAEVLGTPI+GDYKYGW AH+K    +     LK ++++   +    GL+LE 
Sbjct: 339  KHQLRVHCAEVLGTPILGDYKYGWNAHRK----WKPFPTLKFEERLN--RKAPFGLDLEG 392

Query: 699  GSISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLL 532
            GS+SDK+P LHLHC++M LPN+SLA Q     S    +++E + L APLP HM+RSWD+L
Sbjct: 393  GSVSDKKPRLHLHCRQMTLPNMSLAFQHLHEQSVDDLSKLEKLDLVAPLPLHMRRSWDIL 452

Query: 531  N 529
            N
Sbjct: 453  N 453


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  270 bits (691), Expect = 7e-70
 Identities = 141/239 (58%), Positives = 176/239 (73%), Gaps = 5/239 (2%)
 Frame = -3

Query: 1233 LDRDSSGILVMGRTQLSTTILHSIFREKTFGASN-DVPGSDRIVQKKYYALVIGSPRRRE 1057
            LDRD SG+LV+ RTQ + T+LHSIFREKT GAS   V  + + +++KY ALVIG P R+ 
Sbjct: 235  LDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQR 294

Query: 1056 GLISVPLMKVVVDNGKSERITVVDNNHTLSVQHSATEYRVISSSPSGYTWLELSPLTGRK 877
            G IS PL KVVVD+GKSERITV DN   +S QH+ TEYRVI SSP GYTWLEL PLTGRK
Sbjct: 295  GQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRK 354

Query: 876  HQLRVHCAEVLGTPIVGDYKYGWQAHKKLGQYFNSASDLKRDDKMTKFKHNIIGLELENG 697
            HQLRVHCAEVLGTPIVGDYKYGWQAHK    + +S      ++  TK   +  GL+L+ G
Sbjct: 355  HQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSS------ENNPTKQSSSPFGLDLDGG 408

Query: 696  SISDKQPFLHLHCKEMILPNISLALQRGRIIS----NQMESIRLDAPLPAHMQRSWDLL 532
             +S KQP LHLH K++ LPNIS  L++ ++ S    + ++S++ DAPLP+HMQ S++LL
Sbjct: 409  DVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLSFNLL 467