BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00027437
         (1334 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...   586   e-165
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...   582   e-163
gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma ...   581   e-163
gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma ...   581   e-163
gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma ...   581   e-163
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...   581   e-163
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...   581   e-163
ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par...   573   e-161
ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par...   571   e-160
gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma ...   567   e-159
gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...   567   e-159
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...   563   e-158
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...   561   e-157
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...   561   e-157
gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Mor...   556   e-156
dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...   553   e-155
ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t...   553   e-155
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...   553   e-155
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...   553   e-155
ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III s...   547   e-153

>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score =  586 bits (1510), Expect = e-165
 Identities = 299/394 (75%), Positives = 337/394 (85%), Gaps = 3/394 (0%)
 Frame = -2

Query: 1174 DSALFNDLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIK 995
            DS + N  +++   IDKQ LA+P+KN V+K+ L+PEFLKVRGLVKQHLDSFNYFVRT+IK
Sbjct: 4    DSTMSNTTEDSNQGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIK 63

Query: 994  KIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNI 815
            KIV+AN  I S +DP+IYLRY+DV IG PS+V D V EKL P KCR+SD TYAAPIYV I
Sbjct: 64   KIVRANQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTI 123

Query: 814  EYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKG 635
            EY TGS G  +   K++VIIGRMPIMLRS CC+LYGKDE+EL+R GECPLDPGGYFVIKG
Sbjct: 124  EYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKG 183

Query: 634  TEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATK 455
            TEKVILIQEQLSKNRIIID DKKG VQASV SSTE TKSKT+I+MEKEK+YL LN F TK
Sbjct: 184  TEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTK 243

Query: 454  VPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLE-QKVK 278
            VPIM+V+KAMGMESDQEVVQMIGRDPR+S LLLPSIE+C    ++TQ+QALEFLE  K+ 
Sbjct: 244  VPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESDKML 303

Query: 277  KLP-YST-TYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMD 104
            K+P YST   EK    LSILRD FLANVPVHQ+NFR KC+YVAVMMRRMMEAILNKDAMD
Sbjct: 304  KMPSYSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMD 363

Query: 103  DKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            DKDYVGNKRLELSGQ+LSLLFEDLFKTMNDEAR+
Sbjct: 364  DKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARR 397


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score =  582 bits (1500), Expect = e-163
 Identities = 290/380 (76%), Positives = 329/380 (86%), Gaps = 1/380 (0%)
 Frame = -2

Query: 1138 LDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSR 959
            + I K   A PVK AV+KF LLPEFLKVRGLVKQHLDSFNYFV+T IKKIV+AND I S 
Sbjct: 4    MSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSS 63

Query: 958  IDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLGSKAT 779
            +DPSIYLR+KDVRIG PS+ +DG+ EKL PH CR+SD+TYAAPI VNIEYITGS   K  
Sbjct: 64   VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 123

Query: 778  QMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLS 599
              K DV+IGRMPIMLRSCCC+LY KDE EL+R GECPLDPGGYFV+KGTEKVILIQEQLS
Sbjct: 124  VEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLS 183

Query: 598  KNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGM 419
            KNRIIID DKKG + ASV SSTE+TKSKTVI MEKEKI+L LNQF +K+PIMIV+KAMGM
Sbjct: 184  KNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGM 243

Query: 418  ESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLP-YSTTYEKEG 242
            ESDQEVVQM+GR+PRYS LLLPS+E+C    ++TQ QALEFLE+KVKKLP Y+ + EKEG
Sbjct: 244  ESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEG 303

Query: 241  HVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 62
              ++ILRDTF+ANVPV QNNFRPKC+YVAVM+RRMM+AILNKDAMDDKDYVGNKRLELSG
Sbjct: 304  RGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSG 363

Query: 61   QMLSLLFEDLFKTMNDEARK 2
            Q++SLLFEDLFKTM  E +K
Sbjct: 364  QLISLLFEDLFKTMISEVKK 383


>gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
          Length = 1034

 Score =  581 bits (1498), Expect = e-163
 Identities = 292/401 (72%), Positives = 337/401 (84%), Gaps = 4/401 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 1022
            M +K++D  L N+   + +    +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1    MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 1021 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLT 842
            NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61   NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 841  YAAPIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 662
            YAAPI+VNIEYI GS G K    K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121  YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180

Query: 661  PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 482
            PGGYFVIKG EKVILIQEQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181  PGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 240

Query: 481  LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 302
            L LNQF  K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C    ++TQ QAL
Sbjct: 241  LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 300

Query: 301  EFLEQKVKKLPYS-TTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAI 125
            E+LE KVK++ Y+    EKEG  LSILRD FLANVPV  NNFRPKC+YVAVM+RRM+EAI
Sbjct: 301  EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 360

Query: 124  LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT   E +K
Sbjct: 361  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 401


>gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
          Length = 1034

 Score =  581 bits (1498), Expect = e-163
 Identities = 292/401 (72%), Positives = 337/401 (84%), Gaps = 4/401 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 1022
            M +K++D  L N+   + +    +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1    MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 1021 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLT 842
            NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61   NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 841  YAAPIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 662
            YAAPI+VNIEYI GS G K    K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121  YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180

Query: 661  PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 482
            PGGYFVIKG EKVILIQEQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181  PGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 240

Query: 481  LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 302
            L LNQF  K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C    ++TQ QAL
Sbjct: 241  LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 300

Query: 301  EFLEQKVKKLPYS-TTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAI 125
            E+LE KVK++ Y+    EKEG  LSILRD FLANVPV  NNFRPKC+YVAVM+RRM+EAI
Sbjct: 301  EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 360

Query: 124  LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT   E +K
Sbjct: 361  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 401


>gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
          Length = 1011

 Score =  581 bits (1498), Expect = e-163
 Identities = 292/401 (72%), Positives = 337/401 (84%), Gaps = 4/401 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 1022
            M +K++D  L N+   + +    +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1    MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 1021 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLT 842
            NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61   NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 841  YAAPIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 662
            YAAPI+VNIEYI GS G K    K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121  YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180

Query: 661  PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 482
            PGGYFVIKG EKVILIQEQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181  PGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 240

Query: 481  LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 302
            L LNQF  K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C    ++TQ QAL
Sbjct: 241  LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 300

Query: 301  EFLEQKVKKLPYS-TTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAI 125
            E+LE KVK++ Y+    EKEG  LSILRD FLANVPV  NNFRPKC+YVAVM+RRM+EAI
Sbjct: 301  EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 360

Query: 124  LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT   E +K
Sbjct: 361  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 401


>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1158

 Score =  581 bits (1498), Expect = e-163
 Identities = 292/401 (72%), Positives = 337/401 (84%), Gaps = 4/401 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 1022
            M +K++D  L N+   + +    +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1    MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 1021 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLT 842
            NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61   NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 841  YAAPIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 662
            YAAPI+VNIEYI GS G K    K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121  YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180

Query: 661  PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 482
            PGGYFVIKG EKVILIQEQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181  PGGYFVIKGAEKVILIQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 240

Query: 481  LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 302
            L LNQF  K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C    ++TQ QAL
Sbjct: 241  LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 300

Query: 301  EFLEQKVKKLPYS-TTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAI 125
            E+LE KVK++ Y+    EKEG  LSILRD FLANVPV  NNFRPKC+YVAVM+RRM+EAI
Sbjct: 301  EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 360

Query: 124  LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT   E +K
Sbjct: 361  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 401


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score =  581 bits (1497), Expect = e-163
 Identities = 297/394 (75%), Positives = 335/394 (85%), Gaps = 3/394 (0%)
 Frame = -2

Query: 1174 DSALFNDLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIK 995
            DS + N  +++   IDKQ LA+ +KN V+K+ L+PEFLKVRGLVKQHLDSFNYFVRT+IK
Sbjct: 34   DSTMSNTTEDSNQGIDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIK 93

Query: 994  KIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNI 815
            KIV+AN  I S +DP+IYLRY+DV IG PS+V D V EKL P KCR+SD TYAAPIYV I
Sbjct: 94   KIVRANQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTI 153

Query: 814  EYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKG 635
            +Y TGS G  +   K++VIIGRMPIMLRS CC+LYGKDE+EL+R GECPLDPGGYFVIKG
Sbjct: 154  DYTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKG 213

Query: 634  TEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATK 455
            TEKVILIQEQLSKNRIIID DKKG VQASV SSTE TKSKT+I+MEKEK+YL LN F TK
Sbjct: 214  TEKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTK 273

Query: 454  VPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLE-QKVK 278
            VPIM+V+KAMGMESDQEVVQMIGRDPR+S LLLPSIE+C    ++TQ QALEFLE  K+ 
Sbjct: 274  VPIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFLESDKML 333

Query: 277  KLP-YST-TYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMD 104
            K+P YST   EK    LSILRD FLANVPVHQ+NFR KC+YVAVMMRRMMEAILNKDAMD
Sbjct: 334  KMPSYSTGPIEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMD 393

Query: 103  DKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            DKDYVGNKRLELSGQ+LSLLFEDLFKTMNDEAR+
Sbjct: 394  DKDYVGNKRLELSGQLLSLLFEDLFKTMNDEARR 427


>ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1034

 Score =  573 bits (1476), Expect = e-161
 Identities = 288/398 (72%), Positives = 336/398 (84%), Gaps = 1/398 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYF 1013
            MVV + DS    ++ ++ +D  K A AAPVK+AV+KF LLPEFLK RGLVKQHLDSFNYF
Sbjct: 1    MVVVQADSLSEENVVDHLIDKQKHA-AAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYF 59

Query: 1012 VRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAA 833
            +   IKKIV+AND I S +DPS+YLR+ DV+IG PS+V+D + E++TPH CR+SD TYAA
Sbjct: 60   INIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAA 119

Query: 832  PIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGG 653
            PI VNIEYI+GS G K   +K DV+IGRMPIMLRSCCC+LYGK+E EL+R GECPLDPGG
Sbjct: 120  PILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGG 179

Query: 652  YFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYL 473
            YFV+KGTEKVILIQEQLSKNRIIID DKKG + ASV SSTEATKSKTVI MEKEK+YL L
Sbjct: 180  YFVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCL 239

Query: 472  NQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFL 293
            NQFA K+PIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE+C    V+TQ QALE+L
Sbjct: 240  NQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYL 299

Query: 292  EQKVKKLPY-STTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNK 116
            E  VK+  Y S++ EKE   L+ILRD F+ANVPV +NNFRPKC+YVAVM+RRMMEA+LNK
Sbjct: 300  EAMVKRSTYSSSSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNK 359

Query: 115  DAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            DAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM  E +K
Sbjct: 360  DAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQK 397


>ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1035

 Score =  571 bits (1471), Expect = e-160
 Identities = 287/399 (71%), Positives = 336/399 (84%), Gaps = 2/399 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYF 1013
            MVV + DS    ++ ++ +D  K A AAPVK+AV+KF LLPEFLK RGLVKQHLDSFNYF
Sbjct: 1    MVVVQADSLSEENVVDHLIDKQKHA-AAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYF 59

Query: 1012 VRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAA 833
            +   IKKIV+AND I S +DPS+YLR+ DV+IG PS+V+D + E++TPH CR+SD TYAA
Sbjct: 60   INIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAA 119

Query: 832  PIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGG 653
            PI VNIEYI+GS G K   +K DV+IGRMPIMLRSCCC+LYGK+E EL+R GECPLDPGG
Sbjct: 120  PILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGG 179

Query: 652  YFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYL 473
            YFV+KGTEKVILIQEQLSKNRIIID DKKG + ASV SSTEATKSKTVI MEKEK+YL L
Sbjct: 180  YFVVKGTEKVILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCL 239

Query: 472  NQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFL 293
            NQFA K+PIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE+C    V+TQ QALE+L
Sbjct: 240  NQFAKKIPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYL 299

Query: 292  EQKVKKLPY--STTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILN 119
            E  VK+  Y  S+T ++E   L+ILRD F+ANVPV +NNFRPKC+YVAVM+RRMMEA+LN
Sbjct: 300  EAMVKRSTYSSSSTEKQENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLN 359

Query: 118  KDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            KDAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM  E +K
Sbjct: 360  KDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQK 398


>gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
          Length = 1006

 Score =  567 bits (1461), Expect = e-159
 Identities = 287/401 (71%), Positives = 332/401 (82%), Gaps = 4/401 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 1022
            M +K++D  L N+   + +    +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1    MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 1021 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLT 842
            NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61   NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 841  YAAPIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 662
            YAAPI+VNIEYI GS G K    K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121  YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180

Query: 661  PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 482
            PGGYFVIKG EK     EQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181  PGGYFVIKGAEK-----EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 235

Query: 481  LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 302
            L LNQF  K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C    ++TQ QAL
Sbjct: 236  LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 295

Query: 301  EFLEQKVKKLPYS-TTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAI 125
            E+LE KVK++ Y+    EKEG  LSILRD FLANVPV  NNFRPKC+YVAVM+RRM+EAI
Sbjct: 296  EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 355

Query: 124  LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT   E +K
Sbjct: 356  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 396


>gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1153

 Score =  567 bits (1461), Expect = e-159
 Identities = 287/401 (71%), Positives = 332/401 (82%), Gaps = 4/401 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLD---IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSF 1022
            M +K++D  L N+   + +    +DKQ LAAP+K+AV+KF LLPEFLKVRGLVKQHLDSF
Sbjct: 1    MGLKQEDLLLNNNTNNSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSF 60

Query: 1021 NYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLT 842
            NYFV T IKKIV+AND I S +DPSIYLR+KDVRIG PS+ I+ V EK+ PH CR+SD+T
Sbjct: 61   NYFVNTGIKKIVRANDRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMT 120

Query: 841  YAAPIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLD 662
            YAAPI+VNIEYI GS G K    K D++IGRMPIMLRSCCC+LYGKDE EL+R GECPLD
Sbjct: 121  YAAPIFVNIEYIQGSHGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLD 180

Query: 661  PGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIY 482
            PGGYFVIKG EK     EQLSKNRIIIDADKKG + ASV SS+EATKSKTVI+MEKEKIY
Sbjct: 181  PGGYFVIKGAEK-----EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIY 235

Query: 481  LYLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQAL 302
            L LNQF  K+PIM+V+KAMGMESDQEVVQM+GRDP Y+ +LLPSIE+C    ++TQ QAL
Sbjct: 236  LLLNQFVKKIPIMVVMKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQAL 295

Query: 301  EFLEQKVKKLPYS-TTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAI 125
            E+LE KVK++ Y+    EKEG  LSILRD FLANVPV  NNFRPKC+YVAVM+RRM+EAI
Sbjct: 296  EYLETKVKRVMYTGPASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAI 355

Query: 124  LNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKT   E +K
Sbjct: 356  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTTISEVQK 396


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score =  563 bits (1451), Expect = e-158
 Identities = 280/377 (74%), Positives = 320/377 (84%), Gaps = 1/377 (0%)
 Frame = -2

Query: 1129 DKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRIDP 950
            DKQ LAAPVK+ V+KF LLPEFLKVRGLVKQHLDSFNYFV T I+KIV+AND I S IDP
Sbjct: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76

Query: 949  SIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLGSKATQMK 770
            SI+LR+KDVRIG PS+ +DGV EKL PH CR+SD+TYAAPI VNIEY+ GS   K T  K
Sbjct: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136

Query: 769  RDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKNR 590
             DV+IGR+PIMLRSC C+LYGKDE EL+R GECPLDPGGYF+IKGTEKV+LIQEQLSKNR
Sbjct: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196

Query: 589  IIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMESD 410
            +IID DKKG + ASV SSTE  KSKTVI+MEK K+YL LNQF  K+PIM+V+KAMGMESD
Sbjct: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGMESD 256

Query: 409  QEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY-STTYEKEGHVL 233
            QEVVQM+GRDPRYS LLLPSIE+C    ++TQ +ALE+LE KVK+  + S   ++EG   
Sbjct: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316

Query: 232  SILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQML 53
            SILRD FLANVPVH NNFRPKC YVAVM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ++
Sbjct: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376

Query: 52   SLLFEDLFKTMNDEARK 2
            SLLFEDLFKTM  E +K
Sbjct: 377  SLLFEDLFKTMISEVQK 393


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score =  561 bits (1447), Expect = e-157
 Identities = 279/377 (74%), Positives = 320/377 (84%), Gaps = 1/377 (0%)
 Frame = -2

Query: 1129 DKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRIDP 950
            DKQ LAAPVK+ V+KF LLPEFLKVRGLVKQHLDSFNYFV T I+KIV+AND I S IDP
Sbjct: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76

Query: 949  SIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLGSKATQMK 770
            SI+LR+KDVRIG PS+ +DGV EKL PH CR+SD+TYAAPI VNIEY+ GS   K T  K
Sbjct: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136

Query: 769  RDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKNR 590
             DV+IGR+PIMLRSC C+LYGKDE EL+R GECPLDPGGYF+IKGTEKV+LIQEQLSKNR
Sbjct: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196

Query: 589  IIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMESD 410
            +IID DKKG + ASV SSTE  KSKTVI+MEK K+YL LNQF  K+PIM+V+KAMG+ESD
Sbjct: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESD 256

Query: 409  QEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPY-STTYEKEGHVL 233
            QEVVQM+GRDPRYS LLLPSIE+C    ++TQ +ALE+LE KVK+  + S   ++EG   
Sbjct: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316

Query: 232  SILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSGQML 53
            SILRD FLANVPVH NNFRPKC YVAVM+RRM+EA+LNKDAMDDKDYVGNKRLELSGQ++
Sbjct: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376

Query: 52   SLLFEDLFKTMNDEARK 2
            SLLFEDLFKTM  E +K
Sbjct: 377  SLLFEDLFKTMISEVQK 393


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score =  561 bits (1447), Expect = e-157
 Identities = 291/404 (72%), Positives = 333/404 (82%), Gaps = 7/404 (1%)
 Frame = -2

Query: 1192 MVVKEDDSALFND-LQENG----LDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLD 1028
            MVVK  + A  N+ L +N      DIDKQ +  P+K+AV+KF LLPEFLKVRGLVKQHLD
Sbjct: 1    MVVKLPEDASKNEKLGDNSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLD 60

Query: 1027 SFNYFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISD 848
            SFNYFV T+IKKIV+AND I S  DPSIYLR+ DVRIG PS+ ++ V E + PH CR+SD
Sbjct: 61   SFNYFVNTEIKKIVKANDRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSD 120

Query: 847  LTYAAPIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECP 668
            LTYAAPI V+IEYI  S   KA + K+DV+IGRMPIMLRS CC+L+GKDE EL+R GECP
Sbjct: 121  LTYAAPILVDIEYIEESHAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECP 180

Query: 667  LDPGGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEK 488
            LDPGGYF+IKGTEKV+LIQEQLSKNRIIID DKKG + ASV SSTEATKSKTVI+ME EK
Sbjct: 181  LDPGGYFIIKGTEKVVLIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEK 240

Query: 487  IYLYLNQFAT-KVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQY 311
            IYL LN F T K+PIM+VLKAMGMES QEVVQM+GRDPRY  LLLPSIE+C KE ++TQ 
Sbjct: 241  IYLQLNIFTTPKIPIMVVLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQE 300

Query: 310  QALEFLEQKVKKLPY-STTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMM 134
            QALE+LE KVKK  + S   EKEG  L ILRD FLANVPV++NNF PKC+YVAVMMRRMM
Sbjct: 301  QALEYLETKVKKFQFASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMM 360

Query: 133  EAILNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            +AIL+KDAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM  E +K
Sbjct: 361  DAILSKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMVSEVKK 404


>gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis]
          Length = 786

 Score =  556 bits (1432), Expect = e-156
 Identities = 282/399 (70%), Positives = 332/399 (83%), Gaps = 9/399 (2%)
 Frame = -2

Query: 1171 SALFNDLQENGLD-------IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYF 1013
            +A  ND  E G D       IDKQ LAAP+K AV+K+ LLPEFLKVRGLVKQHLDSFNYF
Sbjct: 49   TAFLND--ERGRDGTILSPAIDKQFLAAPIKRAVDKYQLLPEFLKVRGLVKQHLDSFNYF 106

Query: 1012 VRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAA 833
            V T+IKKIV++N  I S +DPSIYLR+ DVRIG PS+ +DGV EKL P  CR+SDLTYAA
Sbjct: 107  VNTEIKKIVRSNSRIVSSVDPSIYLRFTDVRIGEPSVTMDGVSEKLDPQTCRLSDLTYAA 166

Query: 832  PIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGG 653
            PI  ++EYI GS   K    K DV+IGRMPIMLRSCCC+LYGKDE EL++ GECPLDPGG
Sbjct: 167  PIKADVEYIHGSHNQKIQSGKTDVVIGRMPIMLRSCCCVLYGKDEAELAKLGECPLDPGG 226

Query: 652  YFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYL 473
            YF++KGTEKV+LIQEQLSKNRIIID DKKG + ASV SS+EA KSKTVI+MEKEK+YL L
Sbjct: 227  YFIVKGTEKVLLIQEQLSKNRIIIDTDKKGNINASVTSSSEAIKSKTVIQMEKEKLYLML 286

Query: 472  NQFAT-KVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEF 296
            NQF+T K+PIM+V+KAMGMESDQEVVQM+GRDPRYS LL+PS+E+C KE ++TQ QAL +
Sbjct: 287  NQFSTKKIPIMVVIKAMGMESDQEVVQMLGRDPRYSALLMPSLEECGKEGIYTQEQALGY 346

Query: 295  LEQKVKKLPY-STTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILN 119
            LE KVKK  + S + EK+  V++IL+D FLANV VH NNFRPKC+YVAVM+RR+M+AILN
Sbjct: 347  LESKVKKPMFPSASSEKDDRVMAILKDVFLANVRVHGNNFRPKCIYVAVMIRRIMDAILN 406

Query: 118  KDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            KDAMDDKDYVGNKRLELSGQ++SLLFEDLFK+M  E R+
Sbjct: 407  KDAMDDKDYVGNKRLELSGQLISLLFEDLFKSMITEVRR 445


>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  553 bits (1426), Expect = e-155
 Identities = 274/385 (71%), Positives = 324/385 (84%)
 Frame = -2

Query: 1156 DLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 977
            DL  +   IDK+ L+AP+K+  +KF L+PEFLKVRGLVKQHLDSFNYF+   I KIV+AN
Sbjct: 30   DLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKAN 89

Query: 976  DLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGS 797
              ITS +DPSIYLR+K VR+G PS++     E + PH CR++D+TYAAPI+VNIEY+ GS
Sbjct: 90   SRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGS 149

Query: 796  LGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVIL 617
             G+KA   K +VIIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYF+IKGTEKV+L
Sbjct: 150  HGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLL 209

Query: 616  IQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIV 437
            IQEQLSKNRIIID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L++F  K+PI+IV
Sbjct: 210  IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIV 269

Query: 436  LKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTT 257
            LKAMGMESDQE+VQM+GRDPR+S  LLPSIE+CV E V+TQ QAL++LE KVKK+ Y T 
Sbjct: 270  LKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTP 329

Query: 256  YEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKR 77
             EK+G  LSILRD FLA+VPV  NNFR KC YV VM+RRM+EA+LNKDAMDDKDYVGNKR
Sbjct: 330  PEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKR 389

Query: 76   LELSGQMLSLLFEDLFKTMNDEARK 2
            LELSGQ++SLLFEDLFKTM  EA K
Sbjct: 390  LELSGQLISLLFEDLFKTMLSEAIK 414


>ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana]
            gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
            RPC2 [Arabidopsis thaliana]
          Length = 1161

 Score =  553 bits (1426), Expect = e-155
 Identities = 274/385 (71%), Positives = 324/385 (84%)
 Frame = -2

Query: 1156 DLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 977
            DL  +   IDK+ L+AP+K+  +KF L+PEFLKVRGLVKQHLDSFNYF+   I KIV+AN
Sbjct: 9    DLTNDDHFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKAN 68

Query: 976  DLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGS 797
              ITS +DPSIYLR+K VR+G PS++     E + PH CR++D+TYAAPI+VNIEY+ GS
Sbjct: 69   SRITSTVDPSIYLRFKKVRVGEPSIINVNTVENINPHMCRLADMTYAAPIFVNIEYVHGS 128

Query: 796  LGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVIL 617
             G+KA   K +VIIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYF+IKGTEKV+L
Sbjct: 129  HGNKAKSAKDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLL 188

Query: 616  IQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIV 437
            IQEQLSKNRIIID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L++F  K+PI+IV
Sbjct: 189  IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIV 248

Query: 436  LKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTT 257
            LKAMGMESDQE+VQM+GRDPR+S  LLPSIE+CV E V+TQ QAL++LE KVKK+ Y T 
Sbjct: 249  LKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYGTP 308

Query: 256  YEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKR 77
             EK+G  LSILRD FLA+VPV  NNFR KC YV VM+RRM+EA+LNKDAMDDKDYVGNKR
Sbjct: 309  PEKDGRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKR 368

Query: 76   LELSGQMLSLLFEDLFKTMNDEARK 2
            LELSGQ++SLLFEDLFKTM  EA K
Sbjct: 369  LELSGQLISLLFEDLFKTMLSEAIK 393


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  553 bits (1425), Expect = e-155
 Identities = 283/399 (70%), Positives = 331/399 (82%), Gaps = 2/399 (0%)
 Frame = -2

Query: 1192 MVVKEDDSALFNDLQENGLD--IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFN 1019
            M + + DS++ N+ ++N ++  IDKQ L AP+K+AV+KF LLPEFLKVRGLVKQHLDSFN
Sbjct: 1    MGLMQTDSSIGNN-EQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFN 59

Query: 1018 YFVRTQIKKIVQANDLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTY 839
            YFV   IKKIV+AND I S +DP IYLR+KDVRIGTPS ++DGV E+L+PH CR+SD TY
Sbjct: 60   YFVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTY 119

Query: 838  AAPIYVNIEYITGSLGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDP 659
            AAPI VN+EYI GS   K    K DV+IGRMPIMLRS  C+LYGKDE EL+R GECPLDP
Sbjct: 120  AAPILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDP 179

Query: 658  GGYFVIKGTEKVILIQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYL 479
            GGYFVIKGTEKVILIQEQLSKNRIIID DKKG + ASV SSTEATKSKT+I+MEKEK+YL
Sbjct: 180  GGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYL 239

Query: 478  YLNQFATKVPIMIVLKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALE 299
             LNQF  K+PIM+V+KAMGMESDQEVVQM+GRDPRYS LLLPSIE+C   +++TQ +ALE
Sbjct: 240  CLNQFVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALE 299

Query: 298  FLEQKVKKLPYSTTYEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILN 119
            +L+             KE   L+ILRD FLANVPVH+NNFRPKC+YVAVM+RRMMEA+LN
Sbjct: 300  YLD------------GKENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLN 347

Query: 118  KDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEARK 2
            KDAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM  E ++
Sbjct: 348  KDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQR 386


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
            ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score =  553 bits (1424), Expect = e-155
 Identities = 275/385 (71%), Positives = 322/385 (83%)
 Frame = -2

Query: 1156 DLQENGLDIDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQAN 977
            DL  +   IDK+ L+AP+K+  +KF L+PEFLKVRGLVKQHLDSFNYF+   IKKIV AN
Sbjct: 9    DLTNDDNFIDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHAN 68

Query: 976  DLITSRIDPSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGS 797
              I S  DPSIYLR+K+VR+G PS++   + E++ PH CR++D+TYAAPIYVNIEY+ GS
Sbjct: 69   CRIASVTDPSIYLRFKNVRVGEPSIMNINISEEINPHMCRLADMTYAAPIYVNIEYVHGS 128

Query: 796  LGSKATQMKRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVIL 617
             G KAT +K D IIGRMPIMLRSC C+L+GKDEEEL+R GECPLDPGGYFVIKGTEKV+L
Sbjct: 129  HGKKATSVKNDFIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLL 188

Query: 616  IQEQLSKNRIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIV 437
            IQEQLSKNRIIID+DKKG + ASV SSTE TKSKTVI+MEKEKIYL+L+QF  K+PI+IV
Sbjct: 189  IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKKIPIVIV 248

Query: 436  LKAMGMESDQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLEQKVKKLPYSTT 257
            LKAMGMESDQE+VQM+GRDPR+S  LLPSIE+CV E V+TQ QAL++LE KVKK  Y   
Sbjct: 249  LKAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTSYGPP 308

Query: 256  YEKEGHVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKR 77
             EK+G  L ILRD FLA+VPV  NNFR KC YV VM+RRM+EA+LNKD+MDDKDYVGNKR
Sbjct: 309  PEKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKR 368

Query: 76   LELSGQMLSLLFEDLFKTMNDEARK 2
            LELSGQ++SLLFEDLFKTM  EA K
Sbjct: 369  LELSGQLMSLLFEDLFKTMLSEAIK 393


>ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1149

 Score =  547 bits (1409), Expect = e-153
 Identities = 276/380 (72%), Positives = 325/380 (85%), Gaps = 3/380 (0%)
 Frame = -2

Query: 1132 IDKQALAAPVKNAVEKFHLLPEFLKVRGLVKQHLDSFNYFVRTQIKKIVQANDLITSRID 953
            IDKQ LA+P+KN+V+K+ L+PEFLKVRGLVKQHL SFNY V+T I+KIV+AN  I S  D
Sbjct: 20   IDKQYLASPIKNSVDKYQLIPEFLKVRGLVKQHLASFNYLVKTDIRKIVRANHEIRSTRD 79

Query: 952  PSIYLRYKDVRIGTPSLVIDGVPEKLTPHKCRISDLTYAAPIYVNIEYITGSLGSKATQM 773
            P+I+LRY+DVRIG PS+  DGV EKL+P KCR++DLTYAAPI+V ++Y     G  +   
Sbjct: 80   PNIFLRYRDVRIGEPSMTYDGVREKLSPQKCRLADLTYAAPIFVTVDYTMIRNGQISMAT 139

Query: 772  KRDVIIGRMPIMLRSCCCILYGKDEEELSRDGECPLDPGGYFVIKGTEKVILIQEQLSKN 593
            ++DV+IGRMPIMLRSC C+LY KDEE+L++ GECPLDPGGYFV+ G EKVILIQEQLSKN
Sbjct: 140  QKDVVIGRMPIMLRSCLCVLYEKDEEQLAKLGECPLDPGGYFVVNGREKVILIQEQLSKN 199

Query: 592  RIIIDADKKGCVQASVMSSTEATKSKTVIRMEKEKIYLYLNQFATKVPIMIVLKAMGMES 413
            RIIID D+KGCVQASV+ STE TKSKT+I+MEKEK+YL LN F TKVPIM+V+KAMGMES
Sbjct: 200  RIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNMFKTKVPIMVVMKAMGMES 259

Query: 412  DQEVVQMIGRDPRYSELLLPSIEDCVKEAVHTQYQALEFLE-QKVKKLP-YST-TYEKEG 242
            DQEVVQMIGRDPRYS LLLPSIE+C    ++TQ+QALEFLE  K+ ++P YST   EK  
Sbjct: 260  DQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLENDKMFRMPSYSTGPVEKGA 319

Query: 241  HVLSILRDTFLANVPVHQNNFRPKCVYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 62
              LSILRD FLA+VPV+Q+NFR KC+YVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG
Sbjct: 320  RALSILRDMFLAHVPVNQHNFRKKCIYVAVMMRRMMEAILNKDAMDDKDYVGNKRLELSG 379

Query: 61   QMLSLLFEDLFKTMNDEARK 2
            Q+LSLLFEDLFK+MNDEAR+
Sbjct: 380  QLLSLLFEDLFKSMNDEARR 399