BLASTX nr result
ID: Rehmannia26_contig00026177
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00026177
(706 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006576518.1| replication protein 1a [Amazon lily mild mot... 335 6e-90
gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform v... 313 4e-83
ref|NP_619770.1| replicase [Pelargonium zonate spot virus] gi|82... 191 2e-46
gb|AAN37635.1| 1a protein [Cowpea chlorotic mottle virus] 191 2e-46
ref|NP_659000.1| 1a protein [Broad bean mottle virus] gi|401312|... 191 2e-46
gb|AAN37631.1| 1a protein [Cowpea chlorotic mottle virus] 190 4e-46
ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] gi|5131... 189 6e-46
gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus] 189 1e-45
ref|NP_613278.1| 1a protein [Cowpea chlorotic mottle virus] gi|1... 187 2e-45
gb|AEI54608.1| 1a protein [Cowpea chlorotic mottle virus] 187 2e-45
ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus] g... 184 2e-44
gb|AEI54612.1| 1a protein [Cowpea chlorotic mottle virus] 183 4e-44
ref|NP_041196.1| replicase [Brome mosaic virus] gi|137251|sp|P03... 182 9e-44
emb|CAA41361.1| 1a protein [Brome mosaic virus] 182 1e-43
gb|ABF83485.1| 1a [Brome mosaic virus] 181 3e-43
dbj|BAJ41520.1| 1a protein [Brome mosaic virus] 180 3e-43
gb|ADW09019.1| replication protein 1a [Brome mosaic virus] 179 6e-43
ref|NP_689392.1| 1a protein [Spring beauty latent virus] gi|2253... 175 1e-41
gb|AGN56154.1| 1a protein [Cucumber mosaic virus] 174 2e-41
gb|AGN56153.1| 1a protein [Cucumber mosaic virus] 174 2e-41
>ref|YP_006576518.1| replication protein 1a [Amazon lily mild mottle virus]
gi|398650492|dbj|BAM34543.1| replication protein 1a
[Amazon lily mild mottle virus]
Length = 945
Score = 335 bits (860), Expect = 6e-90
Identities = 173/235 (73%), Positives = 186/235 (79%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
NGLGVK DENYIVDKTCILDNL +IAEGADKA S+A+ +L+DGVAGCGKTTSICDQFN
Sbjct: 624 NGLGVKRDDENYIVDKTCILDNLEAIAEGADKASVSTASIILVDGVAGCGKTTSICDQFN 683
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHF 361
AE+DLIVTANRKS+ EIR KLFKDSPD GK +VRTADSVLMHDCI A RILFDE GLLHF
Sbjct: 684 AESDLIVTANRKSAVEIRHKLFKDSPDAGKIYVRTADSVLMHDCIKAERILFDEVGLLHF 743
Query: 362 XXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVH 541
FGDSEQI+FINRD+TF + YSQL VDEST TYRCPKDVV
Sbjct: 744 GQLVAVARKVEAKVVLGFGDSEQIAFINRDRTFNLNYSQLVVDESTTATTTYRCPKDVVE 803
Query: 542 LVKTVIKGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
LVK +K K SKY W +KS VVRSVSAPIDVVGLPGVKLE DWVYLTMTQYD
Sbjct: 804 LVKR-MKKKNHKSKYQAWTTKSKVVRSVSAPIDVVGLPGVKLESDWVYLTMTQYD 857
>gb|AHJ89005.1| putative replicase [Cassava Ivorian bacilliform virus]
Length = 943
Score = 313 bits (801), Expect = 4e-83
Identities = 163/235 (69%), Positives = 184/235 (78%), Gaps = 1/235 (0%)
Frame = +2
Query: 5 GLGVKSPDENYIVDKTCILDNLASIAEGADKA-MNSSATFVLMDGVAGCGKTTSICDQFN 181
GLGVK ENYIVDKTC LDNLA+IA+GA+K + + L+ GCGKTTSI +QF+
Sbjct: 616 GLGVKGETENYIVDKTCTLDNLAAIADGAEKKPVFQKRSSCLLTVSLGCGKTTSIINQFD 675
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCITAPRILFDECGLLHF 361
A +DLIVTANRKS+ EIR+KLF+ SPDLGK+FVRTADSVLMHDCITA R+LFDE GLLHF
Sbjct: 676 ANSDLIVTANRKSAVEIRNKLFEFSPDLGKKFVRTADSVLMHDCITARRLLFDEVGLLHF 735
Query: 362 XXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVH 541
FGDSEQI+FINRDKTF +KYS+LSVDEST TYRCP+DVV
Sbjct: 736 GQLVAVAGKVQADVVLGFGDSEQIAFINRDKTFDLKYSRLSVDESTTALTTYRCPRDVVE 795
Query: 542 LVKTVIKGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
LVK VIK K HSKYH WE+KS+V RSVSAPIDV+GLPGVKLEPDWVYLTMTQYD
Sbjct: 796 LVK-VIKEKTPHSKYHTWETKSSVSRSVSAPIDVIGLPGVKLEPDWVYLTMTQYD 849
>ref|NP_619770.1| replicase [Pelargonium zonate spot virus]
gi|82004832|sp|Q9DUT3.1|1A_PZSVT RecName:
Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|10185102|emb|CAC08526.1|
unnamed protein product [Pelargonium zonate spot virus]
Length = 962
Score = 191 bits (486), Expect = 2e-46
Identities = 114/237 (48%), Positives = 144/237 (60%), Gaps = 2/237 (0%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K P+E ++V+K C+L+N +A G A LMDGVAGCGKTT+I F
Sbjct: 653 SGLGEKRPNEVFLVNKDCVLNNNVLLANGVP-AQPPKGNINLMDGVAGCGKTTAIKRAFV 711
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCI-TAPRILFDECGLLH 358
E+DLIVTAN+KSSE+I +F+D+PD+G+ VRTADSVLMH R+LFDE L+H
Sbjct: 712 FESDLIVTANKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVH 771
Query: 359 FXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVV 538
F FGDSEQISF++RD+ F MKY +LS D S T+RCPKDVV
Sbjct: 772 FGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRCPKDVV 831
Query: 539 HLVKTVI-KGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
VK + K AR SKY+ W + S V +S+ V + L PD YLTMTQ D
Sbjct: 832 ECVKIMARKVGARGSKYNNWFTTSAVRKSLGYH-KVSSINESPLRPDVHYLTMTQAD 887
>gb|AAN37635.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 191 bits (486), Expect = 2e-46
Identities = 109/239 (45%), Positives = 143/239 (59%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K DE Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN
Sbjct: 638 SGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFN 697
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DL+VTAN+KS+E++R+ LF D+P ++ + +RTADS LMH R+L DE GLL
Sbjct: 698 IAEDLVVTANKKSAEDVREALFPDNPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLL 757
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD TF++KY L D IV T+RCP+DV
Sbjct: 758 HYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V+T +K KA R SKY GW+S S V RS+S ++ V L + YLTMTQ D
Sbjct: 818 ISAVQT-LKKKAGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQAD 874
>ref|NP_659000.1| 1a protein [Broad bean mottle virus] gi|401312|sp|Q00020.1|ORF1A_BBMV
RecName: Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|210663|gb|AAA42740.1| 1a
protein [Broad bean mottle virus]
Length = 966
Score = 191 bits (485), Expect = 2e-46
Identities = 108/238 (45%), Positives = 145/238 (60%), Gaps = 4/238 (1%)
Frame = +2
Query: 5 GLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNA 184
GLG K +E Y+VDKTC N +IA+ K + + V++DGVAGCGKTT+I + F
Sbjct: 647 GLGEKFENELYVVDKTCSCANAKAIADACKKVSAPTCSVVMVDGVAGCGKTTAIKETFRF 706
Query: 185 ETDLIVTANRKSSEEIRDKLFKDSPD--LGKRFVRTADSVLMHDCITAPRILFDECGLLH 358
E D+IVTANRKS+E++R +F D+ D + + VRTADS +MH R+L DE GLLH
Sbjct: 707 EKDIIVTANRKSAEDVRKAIFGDASDSEVALKVVRTADSAIMHGLPECHRLLVDEAGLLH 766
Query: 359 FXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVV 538
+ FGD+EQISF +RD TF+MKY + D+ IV T+RCP+DVV
Sbjct: 767 YGQLLAVADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKRDIVSKTFRCPQDVV 826
Query: 539 HLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
VK ++K K R SKY+GW S S V +S+S +V + V +E YLTMT+ D
Sbjct: 827 SAVK-ILKRKCANRSSKYNGWVSSSKVEKSLSKS-RIVSINQVSMEKHKFYLTMTEAD 882
>gb|AAN37631.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 190 bits (482), Expect = 4e-46
Identities = 108/239 (45%), Positives = 143/239 (59%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K DE Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN
Sbjct: 638 SGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFN 697
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DL+VTAN+KS+E++R+ LF ++P ++ + +RTADS LMH R+L DE GLL
Sbjct: 698 IAEDLVVTANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLL 757
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD TF++KY L D IV T+RCP+DV
Sbjct: 758 HYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V+T +K KA R SKY GW+S S V RS+S ++ V L + YLTMTQ D
Sbjct: 818 ISAVQT-LKKKAGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQAD 874
>ref|YP_233101.2| 1a protein [Cassia yellow blotch virus] gi|513125395|dbj|BAD98316.2|
1a protein [Cassia yellow blotch virus]
Length = 955
Score = 189 bits (481), Expect = 6e-46
Identities = 102/237 (43%), Positives = 144/237 (60%), Gaps = 4/237 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K E +IVDK+C++ N AS+A+ + + L DGVAGCGKTT+I + F+
Sbjct: 633 DGLGPKQAGETFIVDKSCVISNNASLAKASQGLKAPKCSVTLCDGVAGCGKTTAIKNTFS 692
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
E D+IVTAN+KS+ ++R+ +F + P ++ +F+RTADS LMH + R+L DE GLL
Sbjct: 693 IEKDIIVTANKKSASDVREAIFPEDPEGEIASKFIRTADSALMHGLPSCQRLLIDEAGLL 752
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
HF FGDSEQISF +RD TF+ ++ ++ D +V TYRCP+DV
Sbjct: 753 HFGQVLAVAAICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDVVTVTYRCPQDV 812
Query: 536 VHLVKTVIK--GKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQ 700
V V + + GK R SKY W S+S V +S+SA + L + +EP Y TMTQ
Sbjct: 813 VAAVVKMKRRTGKLRESKYSSWISRSKVEKSLSAR-PISSLNQIVIEPHKFYQTMTQ 868
>gb|AFU72534.1| 1a protein [Pelargonium zonate spot virus]
Length = 962
Score = 189 bits (479), Expect = 1e-45
Identities = 113/237 (47%), Positives = 143/237 (60%), Gaps = 2/237 (0%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K +E ++V+K C+L+N +A G A LMDGVAGCGKTT+I F
Sbjct: 653 SGLGEKRSNEVFLVNKDCVLNNNVLLANGVP-AQPPKGNINLMDGVAGCGKTTAIKKAFV 711
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSPDLGKRFVRTADSVLMHDCI-TAPRILFDECGLLH 358
E+DLIVTAN+KSSE+I +F D+PD+G+ VRTADSVLMH R+LFDE L+H
Sbjct: 712 FESDLIVTANKKSSEDIIKAMFNDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVH 771
Query: 359 FXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVV 538
F FGDSEQISF++RD+ F MKY +LS D S T+RCPKDVV
Sbjct: 772 FGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDNSDQQIRTFRCPKDVV 831
Query: 539 HLVKTVI-KGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
VK + K AR SKY+ W + S V +S+ V + + L PD YLTMTQ D
Sbjct: 832 ECVKIMARKVGARGSKYNNWFTTSAVRKSLGYH-KVSSINELPLRPDVHYLTMTQAD 887
>ref|NP_613278.1| 1a protein [Cowpea chlorotic mottle virus]
gi|137252|sp|P27752.1|ORF1A_CCMV RecName:
Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|331599|gb|AAA46369.1| 1a
protein [Cowpea chlorotic mottle virus]
Length = 958
Score = 187 bits (476), Expect = 2e-45
Identities = 104/237 (43%), Positives = 139/237 (58%), Gaps = 2/237 (0%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K DE Y+VDK+CI N +++ D S L DGVAGCGKTT+I N
Sbjct: 638 SGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSASN 697
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
L+VTAN+KS+E++R+ LF +P ++ + +RTADS LMH R+L DE GLL
Sbjct: 698 IAEHLVVTANKKSAEDVREALFPHNPSSEIAFKVIRTADSALMHGLPRCKRLLVDEAGLL 757
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD TF++KY L D IV T+RCP+DV
Sbjct: 758 HYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817
Query: 536 VHLVKTVIKGKARHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V+T+ +G R SKY GW+S S V RS+S ++ V L + YLTMTQ D
Sbjct: 818 ISAVQTLKRGGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQAD 873
>gb|AEI54608.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 187 bits (476), Expect = 2e-45
Identities = 107/239 (44%), Positives = 142/239 (59%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GL K DE Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN
Sbjct: 638 SGLSPKFDDELYVVDKSCICANYQVLSKNTDNLKAPSCKISLCDGVAGCGKTTAIKSAFN 697
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DL+VTAN+KS+E++R+ LF ++P ++ + +RTADS LMH R+L DE GLL
Sbjct: 698 IAEDLVVTANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLPQCKRLLVDEAGLL 757
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD TF++KY L D IV T+RCP+DV
Sbjct: 758 HYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V+T +K KA R SKY GW+S S V RS+S ++ V L + YLTMTQ D
Sbjct: 818 ISAVQT-LKKKAGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQAD 874
>ref|YP_003208107.1| 1a protein [Melandrium yellow fleck virus]
gi|259651322|dbj|BAI40161.1| 1a protein [Melandrium
yellow fleck virus]
Length = 948
Score = 184 bits (468), Expect = 2e-44
Identities = 104/244 (42%), Positives = 147/244 (60%), Gaps = 9/244 (3%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GL VK +E Y+VDKTCI+ N +AE + + DGVAGCGKTT+I + F
Sbjct: 628 DGLSVKFDNELYVVDKTCIVSNQQKLAEACRGLSVPTCPVYMCDGVAGCGKTTAIKNTFQ 687
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
E D++VTANRKS++++R +F ++P ++ R++RTADS +MH R+L DE GL+
Sbjct: 688 FERDVVVTANRKSADDVRAAIFPENPNNEIATRYIRTADSAIMHGLPKCKRVLIDEAGLM 747
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD TF+MK++ ++ D +VK TYRCP+DV
Sbjct: 748 HYGQLLAVAAISGCDEVVAFGDTEQISFKSRDVTFRMKHNAINYDSRELVKTTYRCPQDV 807
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNV-----VRSVSAPIDVVGLPGVKLEPDWVYLTM 694
V VK ++K K R SKY+ W SKS V RS+S+P + +E + YLTM
Sbjct: 808 VDAVK-LLKRKCGNRGSKYNDWVSKSTVRKSLYKRSISSPTQ------INIEVNKFYLTM 860
Query: 695 TQYD 706
TQ D
Sbjct: 861 TQSD 864
>gb|AEI54612.1| 1a protein [Cowpea chlorotic mottle virus]
Length = 959
Score = 183 bits (465), Expect = 4e-44
Identities = 106/239 (44%), Positives = 140/239 (58%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K DE Y+VDK+CI N +++ D S L DGVAGCGKTT+I FN
Sbjct: 638 SGLGPKFDDELYVVDKSCICANYQVLSKNTDSLKAPSCKISLCDGVAGCGKTTAIKSAFN 697
Query: 182 AETDLIVTANRKSSEEIRDKLFKDSP--DLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DL+VTAN+KS+E++R+ LF ++P ++ + ADS LMH R+L DE GLL
Sbjct: 698 IAEDLVVTANKKSAEDVREALFPENPSSEIALSYKGPADSALMHGLPQCKRLLVDEAGLL 757
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD TF++KY L D IV T+RCP+DV
Sbjct: 758 HYGQLLAVAALCKCQSFLAFGDTEQISFKSRDATFRLKYGDLQFDSRDIVTETWRCPQDV 817
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V+T +K KA R SKY GW+S S V RS+S ++ V L + YLTMTQ D
Sbjct: 818 ISAVQT-LKKKAGNRTSKYLGWKSHSKVSRSISHK-EIASPLQVTLSREKFYLTMTQAD 874
>ref|NP_041196.1| replicase [Brome mosaic virus] gi|137251|sp|P03588.1|ORF1A_BMV
RecName: Full=Replication protein 1a; Includes: RecName:
Full=ATP-dependent helicase; Includes: RecName:
Full=Methyltransferase gi|58729|emb|CAA26228.1| unnamed
protein product [Brome mosaic virus]
Length = 961
Score = 182 bits (462), Expect = 9e-44
Identities = 107/239 (44%), Positives = 139/239 (58%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K DE YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F
Sbjct: 641 HGLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFR 700
Query: 182 AETDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DLIVTANRKS+E++R LF D + + VRTADS +MH + R+L DE GLL
Sbjct: 701 MGEDLIVTANRKSAEDVRMALFPDTYNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLL 760
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD F++ + L D +V TYRCP+DV
Sbjct: 761 HYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTYRCPQDV 820
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V ++K K R +KY W S+S V RS++ GL V ++P+ YLTMTQ D
Sbjct: 821 IAAV-NLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQ-VTIDPNRTYLTMTQAD 877
>emb|CAA41361.1| 1a protein [Brome mosaic virus]
Length = 961
Score = 182 bits (461), Expect = 1e-43
Identities = 106/239 (44%), Positives = 139/239 (58%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K DE YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F
Sbjct: 641 HGLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFR 700
Query: 182 AETDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DLIVTANRKS+E++R LF D + + VRTADS +MH + R+L DE GLL
Sbjct: 701 MGEDLIVTANRKSAEDVRMALFPDTFNSKVALDIVRTADSAIMHGVPSCHRLLVDEAGLL 760
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD F++ + L D +V TYRCP+DV
Sbjct: 761 HYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCPQDV 820
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V ++K K R +KY W S+S V RS+ A + + V ++P+ YLTMTQ D
Sbjct: 821 IAAV-NLLKRKCGNRDTKYQSWTSESKVSRSL-AKRRITSVLQVTIDPNRTYLTMTQAD 877
>gb|ABF83485.1| 1a [Brome mosaic virus]
Length = 961
Score = 181 bits (458), Expect = 3e-43
Identities = 105/239 (43%), Positives = 139/239 (58%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K DE YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F
Sbjct: 641 HGLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFR 700
Query: 182 AETDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DLIVTANRKS+E++R LF D + + VRTADS +MH + R+L DE GLL
Sbjct: 701 MGEDLIVTANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLL 760
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD F++ + L D +V TYRCP+DV
Sbjct: 761 HYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCPQDV 820
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V ++K K R +KY W S+S V RS++ + + V ++P+ YLTMTQ D
Sbjct: 821 IAAV-NLLKRKCGNRDTKYQSWTSESKVSRSLTKR-RITSVLQVTIDPNRTYLTMTQAD 877
>dbj|BAJ41520.1| 1a protein [Brome mosaic virus]
Length = 961
Score = 180 bits (457), Expect = 3e-43
Identities = 104/239 (43%), Positives = 139/239 (58%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG K DE YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F
Sbjct: 641 HGLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFR 700
Query: 182 AETDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DLIVTANRKS+E++R LF D + + VRTADS +MH + R+L DE GLL
Sbjct: 701 MGEDLIVTANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCHRLLVDEAGLL 760
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD F++ + L D +V TYRCP+DV
Sbjct: 761 HYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLKYDRRDVVHKTYRCPQDV 820
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ + ++K K R +KY W S+S V RS++ + + V ++P+ YLTMTQ D
Sbjct: 821 IAAI-NLLKRKCGNRDTKYQSWTSESKVSRSLTKR-RIASVLQVTIDPNRTYLTMTQAD 877
>gb|ADW09019.1| replication protein 1a [Brome mosaic virus]
Length = 961
Score = 179 bits (455), Expect = 6e-43
Identities = 106/239 (44%), Positives = 138/239 (57%), Gaps = 4/239 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+ LG K DE YIVDKTC NL IAE + K + ++DGVAGCGKTT+I D F
Sbjct: 641 HSLGPKHADETYIVDKTCACSNLRDIAEASAKVSVPTCDISMVDGVAGCGKTTAIKDAFR 700
Query: 182 AETDLIVTANRKSSEEIRDKLFKD--SPDLGKRFVRTADSVLMHDCITAPRILFDECGLL 355
DLIVTANRKS+E++R LF D + + VRTADS +MH + R+L DE GLL
Sbjct: 701 MGEDLIVTANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHGVPSCYRLLVDEAGLL 760
Query: 356 HFXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDV 535
H+ FGD+EQISF +RD F++ + L D +V TYRCP+DV
Sbjct: 761 HYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNLQYDRRDVVHKTYRCPQDV 820
Query: 536 VHLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+ V ++K K R +KY W S+S V RS++ GL V ++P+ YLTMTQ D
Sbjct: 821 IAAV-NLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQ-VTIDPNRTYLTMTQAD 877
>ref|NP_689392.1| 1a protein [Spring beauty latent virus] gi|22531640|dbj|BAC10645.1|
1a protein [Spring beauty latent virus]
Length = 958
Score = 175 bits (443), Expect = 1e-41
Identities = 100/238 (42%), Positives = 138/238 (57%), Gaps = 3/238 (1%)
Frame = +2
Query: 2 NGLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFN 181
+GLG + DE Y+VDKTC + N IA+ + + L DGVAGCGKTT+I F+
Sbjct: 638 SGLGYRFADELYLVDKTCGIANCEEIAKACKALKAPNCSITLCDGVAGCGKTTAIKAAFD 697
Query: 182 AETDLIVTANRKSSEEIRDKLFKD-SPDLGKRFVRTADSVLMHDCITAPRILFDECGLLH 358
+ TDLIVTANRKS+E++R+ LF D + + VRTADS +MH R+L DE GLLH
Sbjct: 698 SSTDLIVTANRKSAEDVREALFGDVNSKIANEVVRTADSAIMHGLPKCSRLLIDEAGLLH 757
Query: 359 FXXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVV 538
+ FGD+EQISF +RD TF+ +++ + D +V T+RCP+DV+
Sbjct: 758 YGQLLAVAALCGCETVLAFGDTEQISFKSRDVTFKFRHAVIEYDRRDVVTETFRCPEDVI 817
Query: 539 HLVKTVIKGKA--RHSKYHGWESKSNVVRSVSAPIDVVGLPGVKLEPDWVYLTMTQYD 706
+K +K K R SKY W ++S+V S+ V + V +E YLTMTQ D
Sbjct: 818 SAIKK-LKRKCGNRDSKYLSWRTQSSVKTSLGMR-SVSSVTQVNIEKHKFYLTMTQAD 873
>gb|AGN56154.1| 1a protein [Cucumber mosaic virus]
Length = 993
Score = 174 bits (442), Expect = 2e-41
Identities = 106/239 (44%), Positives = 142/239 (59%), Gaps = 5/239 (2%)
Frame = +2
Query: 5 GLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNA 184
GLG KS E +IV++ C++ N S++ + T +DGVAGCGKTT+I F
Sbjct: 671 GLGPKSDGELFIVNRECVICNSESLSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEP 730
Query: 185 ETDLIVTANRKSSEEIRDKLFKDSPDL-GKRFVRTADSVLMHDCITAPRILFDECGLLHF 361
TD+IVTAN+KS++++R LFK S FVRTADSVL+++C T R+L DE LLHF
Sbjct: 731 STDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHF 790
Query: 362 XXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVH 541
FGDSEQI+F +RD +F M++S+++ DE++ T+R P+DVV
Sbjct: 791 GQLCAVMSKLKAVRAICFGDSEQIAFSSRDASFDMRFSKITPDETSDADTTFRSPQDVVP 850
Query: 542 LVK---TVIKGKARHSKYHGWESKSNVVRSV-SAPIDVVGLPGVKLEPDWVYLTMTQYD 706
LV+ T K HSKY W S+S V RSV S I V L V L+P Y+TMTQ D
Sbjct: 851 LVRLMATKALPKGTHSKYTKWVSQSKVKRSVTSRAITTVTL--VDLDPSRFYITMTQAD 907
>gb|AGN56153.1| 1a protein [Cucumber mosaic virus]
Length = 993
Score = 174 bits (442), Expect = 2e-41
Identities = 106/239 (44%), Positives = 142/239 (59%), Gaps = 5/239 (2%)
Frame = +2
Query: 5 GLGVKSPDENYIVDKTCILDNLASIAEGADKAMNSSATFVLMDGVAGCGKTTSICDQFNA 184
GLG KS E +IV++ C++ N S++ + T +DGVAGCGKTT+I F
Sbjct: 671 GLGPKSDGELFIVNRECVICNSESLSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEP 730
Query: 185 ETDLIVTANRKSSEEIRDKLFKDSPDL-GKRFVRTADSVLMHDCITAPRILFDECGLLHF 361
TD+IVTAN+KS++++R LFK S FVRTADSVL+++C T R+L DE LLHF
Sbjct: 731 STDMIVTANKKSAQDVRMALFKSSDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHF 790
Query: 362 XXXXXXXXXXXXXXXXXFGDSEQISFINRDKTFQMKYSQLSVDESTIVKHTYRCPKDVVH 541
FGDSEQI+F +RD +F M++S+++ DE++ T+R P+DVV
Sbjct: 791 GQLCAVMSKLKAVRAICFGDSEQIAFSSRDASFDMRFSKITPDETSDADTTFRSPQDVVP 850
Query: 542 LVK---TVIKGKARHSKYHGWESKSNVVRSV-SAPIDVVGLPGVKLEPDWVYLTMTQYD 706
LV+ T K HSKY W S+S V RSV S I V L V L+P Y+TMTQ D
Sbjct: 851 LVRLMATKALPKGTHSKYTKWVSQSKVKRSVTSRAITTVTL--VDLDPSRFYITMTQAD 907