BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00022394
         (511 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    65   7e-09
emb|CAN66743.1| hypothetical protein VITISV_043469 [Vitis vinifera]    65   1e-08
gb|AAK29467.1| polyprotein-like [Solanum chilense]                     64   2e-08
emb|CAE01742.2| OSJNBb0056F09.5 [Oryza sativa Japonica Group]          59   5e-07
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...    59   9e-07
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz...    57   3e-06
gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul...    57   3e-06
gb|EMJ28363.1| hypothetical protein PRUPE_ppa025366mg [Prunus pe...    56   6e-06
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    56   6e-06
gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subc...    56   6e-06

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
 Frame = +3

Query: 204 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVARGMNR 383
           ILLL S+P SYD++ TT+L+ K T++L+ + ++LL +EK +K  +++G   AL+  G  R
Sbjct: 146 ILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQG--QALITEGRGR 203

Query: 384 NGRKXXXXXXXXXXXXXXXXNS----IGCHRCHDEGHIKRNCP 500
           + ++                 S      C+ C+  GH KR+CP
Sbjct: 204 SYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCP 246


>emb|CAN66743.1| hypothetical protein VITISV_043469 [Vitis vinifera]
          Length = 798

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
 Frame = +3

Query: 204 ILLLTSIPDS--YDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVA-RG 374
           ++ L S+P S  Y+++VTTL++ K+TLDLE I ++LL   ++KKAN +      L+A R 
Sbjct: 59  LMXLNSLPVSSTYENLVTTLMWGKETLDLEEITSALLGLNQRKKANDESSQGEGLMAKRN 118

Query: 375 MNRNGRK-XXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRK 509
             R   K                   I C++C  +GH+KR+CP +K
Sbjct: 119 QERERNKFRSELSNNKSRFESKKIKDIQCYKCGKKGHMKRDCPEKK 164


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
 Frame = +3

Query: 198 RHILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVARGM 377
           + I+LL S+P SYD++ TT+L+ KD++ L+ + ++LL +EK +K  ++ G      +RG 
Sbjct: 145 KRIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLLNEKMRKKPENHGQVFITESRGR 204

Query: 378 N--RNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRK 509
           +  R+                    +  C+ C   GH KR+CP  K
Sbjct: 205 SYQRSSSNYGRSGARGKSKVRSKSKARNCYNCDQPGHFKRDCPNPK 250


>emb|CAE01742.2| OSJNBb0056F09.5 [Oryza sativa Japonica Group]
          Length = 371

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
 Frame = +3

Query: 204 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHE----KQKKANQDEGHESALVAR 371
           I+LL S+P SY+ +VTTL++ KDT+  E I +SLL+ +    K+ +A +    ES LV  
Sbjct: 167 IILLCSLPPSYEHVVTTLMHGKDTIKTEEIISSLLARDLRRSKKNEAMEASQAESLLVKA 226

Query: 372 GMNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRK 509
             +                         C++CH+ GHI+RNCP  K
Sbjct: 227 KHDHEA-----------GVLKSKEKGARCYKCHEFGHIRRNCPLLK 261


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
 Frame = +3

Query: 204 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHE---KQKKANQDEGHESALVARG 374
           ++LL+S+PD ++ + TTLL+ K+ + L+ + ++L SHE   + K   +    E ALVARG
Sbjct: 87  LMLLSSLPDEFEHLETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKSTTSEEALVARG 146

Query: 375 MNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPR 503
             ++  K                    C  CH++GH K++CP+
Sbjct: 147 RQQSQTKERRGMSKSKGRAVAKDE---CAFCHEKGHWKKDCPK 186


>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
           Group] gi|108706491|gb|ABF94286.1| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 556

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
 Frame = +3

Query: 204 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHE----KQKKANQDEGHESALV-- 365
           I+LL S+P S++ +VTTL + KDT+  E I +SLL+ +    K+ +A +    ES LV  
Sbjct: 278 IILLCSLPPSFEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEAMEASQAESLLVKA 337

Query: 366 ----ARGMNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRK 509
                 G++++  K                    C++CH+ GHI+RNCP  K
Sbjct: 338 KHDHEAGVSKSKEK-----------------GARCYKCHEFGHIRRNCPLLK 372


>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
          Length = 324

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
 Frame = +3

Query: 204 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHE---KQKKANQDEGHESALVARG 374
           ++L++S+PD ++ + TTLL+ KD + L+ + ++L SHE   + K   +    E ALV RG
Sbjct: 126 LMLVSSLPDEFEHLETTLLHGKDNVSLDVVCSALYSHELRKQDKMKTKSTTSEEALVTRG 185

Query: 375 MNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPR 503
             ++  K                    C  CH++GH K++CP+
Sbjct: 186 GQQSQTKERRGMCKSKGRVVAKDE---CAFCHEKGHWKKDCPK 225


>gb|EMJ28363.1| hypothetical protein PRUPE_ppa025366mg [Prunus persica]
          Length = 191

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = +3

Query: 207 LLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQK--KANQDEGHESALVARGMN 380
           LLLTS+P+ YD ++TT+ Y+K TL +E ++A+LLS+EK+K  + +  +  +     RG +
Sbjct: 106 LLLTSLPNLYDRVLTTMFYDKYTLKMEDVEATLLSNEKRKIVEDSHSQNQKGRQTVRGSS 165

Query: 381 RNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIK 488
            + +                   + C++C + GH+K
Sbjct: 166 SHNKS----------KSRDSGKGVQCYKCKELGHLK 191


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
 Frame = +3

Query: 204 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHEKQKKANQDEGHESALVARGMNR 383
           ILLLTS+  SY +M   ++Y +D+L  + +++ L + E QK   Q+E  E +    G+N 
Sbjct: 146 ILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSILHARELQK---QEESKEES--GEGLNI 200

Query: 384 NGR--KXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRK 509
            GR  K                    C  CH EGH K++CP R+
Sbjct: 201 RGRSEKREKKGKNSKSRSKSKTKKFKCFICHKEGHFKKDCPDRR 244


>gb|AAP53866.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 415

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 10/112 (8%)
 Frame = +3

Query: 204 ILLLTSIPDSYDSMVTTLLYEKDTLDLEHIKASLLSHE----KQKKANQDEGHESALV-- 365
           I+LL S+P SY+ +VTTL + KDT+  E I +SLL+ +    K+ +A +    +S LV  
Sbjct: 147 IILLCSLPLSYEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKNEATKASQGKSLLVKD 206

Query: 366 ----ARGMNRNGRKXXXXXXXXXXXXXXXXNSIGCHRCHDEGHIKRNCPRRK 509
                 G++++  K                    C++CH+ GHI+RNCP  K
Sbjct: 207 KHDHEAGVSKSKEK-----------------GARCYKCHEFGHIRRNCPLLK 241