BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00014846
         (3058 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlise...  1545   0.0  
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...  1481   0.0  
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...  1478   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1471   0.0  
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...  1448   0.0  
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...  1436   0.0  
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1419   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1399   0.0  
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...  1356   0.0  
gb|EOY29338.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...  1344   0.0  
gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1344   0.0  
gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus pe...  1336   0.0  
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...  1311   0.0  
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...  1309   0.0  
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...  1306   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1297   0.0  
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...  1294   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV a...  1283   0.0  
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...  1281   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1281   0.0  

>gb|EPS73521.1| hypothetical protein M569_01229, partial [Genlisea aurea]
          Length = 1205

 Score = 1545 bits (3999), Expect = 0.0
 Identities = 752/1019 (73%), Positives = 877/1019 (86%), Gaps = 3/1019 (0%)
 Frame = -3

Query: 3050 NGSTQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSY 2871
            NG+T M+I            D++ +AMQ LDEG +K FCRKAATSFFE++GLISHQ+NSY
Sbjct: 15   NGNTFMDIDEDIDFDLSDSDDDIDNAMQDLDEGVVKSFCRKAATSFFEQHGLISHQLNSY 74

Query: 2870 NDFVKHGIQQVFDSVGEITVEPSFDPSKKGD-GDWRYASLKFGKVTLEHPTFFAGEKFSS 2694
            N+F+ HGI Q+F S+GEI VEP +DPSK+GD G+W+ ASLKFGKV LE P+F+ GEKFSS
Sbjct: 75   NNFINHGIHQLFASIGEIIVEPGYDPSKRGDDGEWQKASLKFGKVNLERPSFWTGEKFSS 134

Query: 2693 VDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQV-YTKGLSRSDKFKTGVENFVDKTVLN 2517
             +G +++L+L P++ARLQNMTY++RIKVETHL+V YT+GL RS+KF TGV   V +T L 
Sbjct: 135  AEGAKDNLELHPKHARLQNMTYAARIKVETHLEVVYTEGLVRSEKFTTGVSTHVQRTTLK 194

Query: 2516 DYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWV 2337
                ++ FG+LPVMV SDLCW+ S+ K+DCEFDQGGYF+IKGAEKTFIAQEQ+CL RLWV
Sbjct: 195  SLSLEINFGKLPVMVNSDLCWLKSTGKKDCEFDQGGYFIIKGAEKTFIAQEQICLKRLWV 254

Query: 2336 TKTPTWTVAYRPVSKRKRVYIKLVPKVENIMGADKILTVYFYVTEFPIWVLFFALGVSND 2157
            +K PTWT++YRP++KR+R+Y+KLVPKVE+    +KILTVYF   E PIW+LFFALG  ND
Sbjct: 255  SKDPTWTISYRPITKRRRIYLKLVPKVESAPVGEKILTVYFSFVEMPIWILFFALGARND 314

Query: 2156 REVVNLIDLDIEDSAIANILIASIYNADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVE 1977
            +EVV +ID+DIEDSAIANIL+ASI++AD KYEGFRK G+A+KH++DLM+  K PP ESVE
Sbjct: 315  KEVVKMIDMDIEDSAIANILLASIHDADSKYEGFRKNGSAIKHLKDLMQEGKYPPTESVE 374

Query: 1976 ECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXL 1797
            E  + +LFP+L S  QKAC LAYMVKCLLE Y+GRRKVDNRDDLRNK            L
Sbjct: 375  EYFQIHLFPHLKSSVQKACFLAYMVKCLLECYKGRRKVDNRDDLRNKRLELAGELLEREL 434

Query: 1796 KIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERV 1617
            +I IKHAER M++S+QRDLD+ R+LQ I+HYLDASIITNGLSRAFSTGAWSHPYK+MER+
Sbjct: 435  RIQIKHAERRMMRSMQRDLDKGRDLQTIDHYLDASIITNGLSRAFSTGAWSHPYKRMERI 494

Query: 1616 SGVVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 1437
            SG+VAT+RRTNPLQA ADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV
Sbjct: 495  SGIVATLRRTNPLQAIADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLV 554

Query: 1436 KNLASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSS 1257
            KNLAS+GLVST +L QE LL++FRECGME+L DD SSLLDGKHKIFLDGD VG+C+DSSS
Sbjct: 555  KNLASLGLVSTEVLDQEGLLKKFRECGMEQLADDTSSLLDGKHKIFLDGDLVGVCRDSSS 614

Query: 1256 FVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGDFSF 1077
            FVS LRR+R++ EVP+QVEIK D+ +GEVR+F DAGRILRPLLVV+NL+KI DLK    F
Sbjct: 615  FVSMLRRRRQKNEVPHQVEIKMDQSNGEVRVFADAGRILRPLLVVRNLRKINDLKSHVFF 674

Query: 1076 QSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIP 897
            QSLLD G++E IGPEEEEDCQTAWG K+LF AEL+NPPV+Y+HCELDSSFLLGLSCG+IP
Sbjct: 675  QSLLDVGIVELIGPEEEEDCQTAWGTKYLFMAELENPPVKYSHCELDSSFLLGLSCGIIP 734

Query: 896  FANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSK 717
            FANHDHARRVLYQSEKHSQQAIG+STT+P+IR+DTNSHQLYYPQ+PLFRT+L+DCLGK  
Sbjct: 735  FANHDHARRVLYQSEKHSQQAIGFSTTSPNIRVDTNSHQLYYPQKPLFRTVLSDCLGKLT 794

Query: 716  LSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEV 537
             S  +K ++P P FFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFR+EHVRSYK++V
Sbjct: 795  DSCRRKGIIPLPPFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKSDV 854

Query: 536  ENPE-APGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVD 360
            +N E AP KK K DDL+SFGK QSKIGRVDSL++DGFPYVGANLQTGDIVIGK  A+GVD
Sbjct: 855  DNSEAAPVKKFKADDLISFGKVQSKIGRVDSLDEDGFPYVGANLQTGDIVIGKCTATGVD 914

Query: 359  HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 180
            HSIKLKHTERGMVQKV+LS++DEG+N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ
Sbjct: 915  HSIKLKHTERGMVQKVILSADDEGRNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 974

Query: 179  ENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            ENFPFT+QGIVPDIVINPHAFPSRQTPGQ               LKYATPFS+PSVEDI
Sbjct: 975  ENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGLKYATPFSSPSVEDI 1033


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1217

 Score = 1481 bits (3835), Expect = 0.0
 Identities = 731/990 (73%), Positives = 837/990 (84%), Gaps = 3/990 (0%)
 Frame = -3

Query: 2963 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 2784
            L E YLK FC+KA+T FFEKYGLISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+
Sbjct: 61   LGETYLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 120

Query: 2783 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 2604
            GDGDW++AS+KFGKVTLE P F+AGEKFS+ DG +E+L L PR+ARLQNMTYS+RI VET
Sbjct: 121  GDGDWKHASVKFGKVTLERPKFWAGEKFSA-DGGKEYLDLLPRHARLQNMTYSARIMVET 179

Query: 2603 HLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCE 2424
            H+QVYTK L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCE
Sbjct: 180  HVQVYTKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCE 239

Query: 2423 FDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVEN 2250
            FD GGYF++KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+
Sbjct: 240  FDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 299

Query: 2249 IMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNADK 2070
            I G +K L+VY  + E PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI+ ADK
Sbjct: 300  IKGGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 358

Query: 2069 KYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLL 1890
              E FRK   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL
Sbjct: 359  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 418

Query: 1889 EAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIE 1710
             ++ GRRKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIE
Sbjct: 419  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 478

Query: 1709 HYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYT 1530
            HYLDASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YT
Sbjct: 479  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 538

Query: 1529 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGME 1350
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+
Sbjct: 539  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQ 596

Query: 1349 KLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEV 1170
            KL DD ++ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEV
Sbjct: 597  KLVDDCATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 656

Query: 1169 RIFIDAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKH 993
            RIF D+GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IEFIGPEEEEDC+TAWG+++
Sbjct: 657  RIFSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEEEEDCRTAWGVEY 716

Query: 992  LFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTN 813
            +  A+ +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST N
Sbjct: 717  ILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVN 776

Query: 812  PSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHL 633
            P+ R+DTN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHL
Sbjct: 777  PNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCTQYQKGMLPRPEYFNGQCAIVAVNVHL 836

Query: 632  GYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRV 453
            GYNQEDSLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRV
Sbjct: 837  GYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRV 896

Query: 452  DSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAV 273
            DSL+DDGFP++GANLQ+GDI+IGK A SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAV
Sbjct: 897  DSLDDDGFPFIGANLQSGDIIIGKFAESGADHSVKLKHTERGMVQKVLLSANDEGKNFAV 956

Query: 272  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 93
            VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 957  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 1016

Query: 92   XXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
                            KYATPFST SV+ I
Sbjct: 1017 LLEAALGKGIALGGGQKYATPFSTLSVDAI 1046


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
            lycopersicum]
          Length = 1217

 Score = 1478 bits (3826), Expect = 0.0
 Identities = 730/990 (73%), Positives = 835/990 (84%), Gaps = 3/990 (0%)
 Frame = -3

Query: 2963 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 2784
            L E +LK FC+KA+T FFEKYGLISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+
Sbjct: 61   LGESFLKNFCKKASTGFFEKYGLISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 120

Query: 2783 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 2604
            GDGDW++AS+KFGKVTLE P F+AGEKFS VDG +E+L L PR+ARLQNMTYS+RI VET
Sbjct: 121  GDGDWKHASVKFGKVTLERPKFWAGEKFS-VDGGKEYLDLLPRHARLQNMTYSARIMVET 179

Query: 2603 HLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCE 2424
            H+QVYTK L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCE
Sbjct: 180  HVQVYTKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCE 239

Query: 2423 FDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVEN 2250
            FD GGYF++KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+
Sbjct: 240  FDHGGYFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 299

Query: 2249 IMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNADK 2070
            I G +K L+VY  + E PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI+ ADK
Sbjct: 300  IKGGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 358

Query: 2069 KYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLL 1890
              E FRK   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL
Sbjct: 359  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 418

Query: 1889 EAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIE 1710
             ++ GRRKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIE
Sbjct: 419  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 478

Query: 1709 HYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYT 1530
            HYLDASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YT
Sbjct: 479  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 538

Query: 1529 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGME 1350
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+
Sbjct: 539  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQ 596

Query: 1349 KLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEV 1170
            KL DD S+ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEV
Sbjct: 597  KLVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 656

Query: 1169 RIFIDAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKH 993
            RIF D GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IE IGPEEEEDC+TAWG+++
Sbjct: 657  RIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEY 716

Query: 992  LFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTN 813
            +  A+ +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST N
Sbjct: 717  ILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVN 776

Query: 812  PSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHL 633
            P+ R+DTN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHL
Sbjct: 777  PNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHL 836

Query: 632  GYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRV 453
            GYNQEDSLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRV
Sbjct: 837  GYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRV 896

Query: 452  DSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAV 273
            DSL+DDGFP++GANLQ+GDI+IGK + SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAV
Sbjct: 897  DSLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAV 956

Query: 272  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 93
            VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 957  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 1016

Query: 92   XXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
                            KYATPFST SV+ I
Sbjct: 1017 LLEAALGKGIALGGGQKYATPFSTLSVDAI 1046


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1471 bits (3809), Expect = 0.0
 Identities = 728/990 (73%), Positives = 832/990 (84%), Gaps = 3/990 (0%)
 Frame = -3

Query: 2963 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 2784
            L E +LK FC+KA+T FFEKYG ISHQINSYNDF+ +GIQ+VFDSVGEI VEP +DPSK+
Sbjct: 55   LGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKR 114

Query: 2783 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 2604
            GDGDW++AS+KFGKVTLE P F+AGEKFS V G +E+L L PR+ARLQNMTYS+RI VET
Sbjct: 115  GDGDWKHASVKFGKVTLERPKFWAGEKFS-VGGGKEYLDLLPRHARLQNMTYSARIMVET 173

Query: 2603 HLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCE 2424
            H+QVYTK L RSDKFKTGV+ FVDK    +   DV+ GR+PVMV S+LCWMN  +K DCE
Sbjct: 174  HVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCE 233

Query: 2423 FDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVEN 2250
            FD GGYF+ KGAEKTFIAQEQ+CL RLWV+  PTW V YRP  KRKRVYIKL    K+E+
Sbjct: 234  FDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEH 293

Query: 2249 IMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNADK 2070
            I G +K L+VY  + E PIWVLFFALGVS+DREVVNLID+DIED+ I NIL+ASI+ ADK
Sbjct: 294  IKGGEKALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADK 352

Query: 2069 KYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLL 1890
              E FRK   A+ +++ L+K+ K PP+ESVEECI  YLFPNLS  +QKA  L YMVKCLL
Sbjct: 353  NCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLL 412

Query: 1889 EAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIE 1710
             ++ GRRKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR++QPIE
Sbjct: 413  HSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIE 472

Query: 1709 HYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYT 1530
            HYLDASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TADMRK+RQQV+YT
Sbjct: 473  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYT 532

Query: 1529 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGME 1350
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVST IL+    L+    CGM+
Sbjct: 533  GKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQ 590

Query: 1349 KLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEV 1170
            KL DD S+ L GK K+ LDG+WVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+  GEV
Sbjct: 591  KLVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEV 650

Query: 1169 RIFIDAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKH 993
            RIF D GRILRPLLVV NLKKIK LKG D+ FQSLLD+G+IE IGPEEEEDC+TAWG+++
Sbjct: 651  RIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEY 710

Query: 992  LFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTN 813
            +  A+ +NPP +YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST N
Sbjct: 711  ILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVN 770

Query: 812  PSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHL 633
            P+ R+DTN+HQLYYPQRPLFRT+LAD LGK K + +QK MLPRPE+FNGQCAIVAVNVHL
Sbjct: 771  PNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHL 830

Query: 632  GYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRV 453
            GYNQEDSLVMNRASLERGMFR+EHVRSYKAEV+N EA  KK KI+D V+FGKTQSKIGRV
Sbjct: 831  GYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRV 890

Query: 452  DSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAV 273
            DSL+DDGFP++GANLQ+GDI+IGK + SG DHS+KLKHTERGMVQKV+LS+NDEGKNFAV
Sbjct: 891  DSLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAV 950

Query: 272  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQ 93
            VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 951  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 1010

Query: 92   XXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
                            KYATPFST SV+ I
Sbjct: 1011 LLEAALGKGIALGGGQKYATPFSTLSVDAI 1040


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Solanum tuberosum]
          Length = 1219

 Score = 1448 bits (3749), Expect = 0.0
 Identities = 709/999 (70%), Positives = 836/999 (83%), Gaps = 7/999 (0%)
 Frame = -3

Query: 2978 SAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSF 2799
            ++++ L  G+L+ FC+KA+  FFEKYG+ISHQI+SYNDF+++GIQ+VFDSVGEI VEP +
Sbjct: 54   TSIKELGGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGY 113

Query: 2798 DPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSR 2619
            DPSKKG+G+W++AS+KFGKVTL+ P F+AGEKFS+ +G +E+L L PR+ARLQNMTYS+R
Sbjct: 114  DPSKKGEGEWKHASVKFGKVTLDRPKFWAGEKFSAYNG-EEYLDLWPRHARLQNMTYSAR 172

Query: 2618 IKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSE 2439
            I VETH+QV+TK L RSDKFKTGVE FVDK  + +   DV  GR+PVMV S+LCWM+ ++
Sbjct: 173  IIVETHVQVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGAD 232

Query: 2438 KRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP- 2262
            + DC+FD GGYF++KGAEK FIAQEQ+CL RLWV+   TW VAYR   KR RVY+KL   
Sbjct: 233  RPDCDFDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTET 292

Query: 2261 -KVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASI 2085
             K E+I G  K L+VYF + E PIWVLFFALGVS+DRE+V+LID+DI+D+ I NIL+ASI
Sbjct: 293  LKHEHIKGEAKALSVYF-LAEMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASI 351

Query: 2084 YNADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYM 1905
            ++ADK  E FRK   A+ +++ L+KS K PP+ESVEECIK YLFPNLS  +QKA  L YM
Sbjct: 352  HDADKNCEDFRKGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYM 411

Query: 1904 VKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRE 1725
            VKCLL +Y GRRKVDNRDD RNK            L+ HIKHAER MVK++QRDL  DR+
Sbjct: 412  VKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRAHIKHAERRMVKALQRDLCGDRQ 471

Query: 1724 LQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQ 1545
            +QP+EHYLDASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TAD+RKTRQ
Sbjct: 472  VQPLEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQ 531

Query: 1544 QVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFR 1365
            QV+YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVSTT+L+   LL+   
Sbjct: 532  QVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKP--LLETLF 589

Query: 1364 ECGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1185
             CGM+KL DD ++ L GK K+ LDGDWVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+
Sbjct: 590  RCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDE 649

Query: 1184 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLK-----GDFSFQSLLDSGVIEFIGPEEEED 1020
               EVRIF DAGRI+RPLLVV NLK IK LK     GD+ FQ+LLD G+IE IGPEEEED
Sbjct: 650  QQDEVRIFSDAGRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELIGPEEEED 709

Query: 1019 CQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQ 840
            C+TAWG+++L  A+ +NPPV YTHCELD SFLLGLSCGLIPFANHDHARRVLYQSEKHSQ
Sbjct: 710  CRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQ 769

Query: 839  QAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQC 660
            QAIG+ST NP+ R+DTN+HQLYYPQRPLF T+L+D LGK K   HQK ML RPE++NGQC
Sbjct: 770  QAIGFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCGRHQKGMLSRPEYYNGQC 829

Query: 659  AIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFG 480
            AIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHVRSYKAEV+N EA GKK K++D V+FG
Sbjct: 830  AIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFG 889

Query: 479  KTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSS 300
            KTQSKIGRVDSL+DDGFP++GANLQ+GDI+IGK+A SG DHS+K+KHTERGMVQKV+LS+
Sbjct: 890  KTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKYAESGADHSVKMKHTERGMVQKVLLSA 949

Query: 299  NDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHA 120
            ND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHA
Sbjct: 950  NDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHA 1009

Query: 119  FPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            FPSRQTPGQ                KYATPFS  SV+ I
Sbjct: 1010 FPSRQTPGQLLEAALGKGIALGGGEKYATPFSALSVDAI 1048


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
            lycopersicum]
          Length = 1219

 Score = 1436 bits (3717), Expect = 0.0
 Identities = 706/999 (70%), Positives = 829/999 (82%), Gaps = 7/999 (0%)
 Frame = -3

Query: 2978 SAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSF 2799
            ++++ L  G+L+ FC+KA+  FFEKYGLISHQI+SYNDF+++GIQ+VFDSVGEI VEP +
Sbjct: 54   ASIKELGGGFLRNFCKKASAGFFEKYGLISHQIDSYNDFIRYGIQKVFDSVGEIHVEPGY 113

Query: 2798 DPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSR 2619
            DPSKKG+G+W++AS+KFG V L+ P F+AGEK+S+ +G +E+L + PR+ARLQNMTYS+R
Sbjct: 114  DPSKKGEGEWKHASVKFGNVILDRPKFWAGEKYSAYNG-EEYLNMWPRHARLQNMTYSAR 172

Query: 2618 IKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSE 2439
            I VETH+QV+TK L RSDKFKTGVE FVDK  + +   DV  GR+PVMV S+LCWM+ ++
Sbjct: 173  IIVETHVQVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGAD 232

Query: 2438 KRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP- 2262
            + DCEFD GGYF++KGAEK FIAQEQMCL RLWV+   TW VAYR   KR RVY+KL   
Sbjct: 233  RLDCEFDHGGYFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTET 292

Query: 2261 -KVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASI 2085
             K E I G  K L+VYF + E PIWVLFFALGVS+DREVV+LID+DI+D+ I NIL+ASI
Sbjct: 293  LKHEQIKGEAKSLSVYF-LAEMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASI 351

Query: 2084 YNADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYM 1905
            ++ADK  E FRK   A+ +++ L+KS K PP+ESVEECIK YLFPNLS  +QKA  L YM
Sbjct: 352  HDADKNCEDFRKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYM 411

Query: 1904 VKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRE 1725
            VKCLL +Y GRRKVDNRDD RNK            L++HIKHAER MVK++QRDL  DR+
Sbjct: 412  VKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHIKHAERRMVKALQRDLCGDRQ 471

Query: 1724 LQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQ 1545
            + PIEHYLDASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TAD+RKTRQ
Sbjct: 472  VHPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQ 531

Query: 1544 QVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFR 1365
            QV+YTG+VGDARYP+PSHWGK+CFLSTPDGENCGLVKNLASMGLVSTT+L    LL+   
Sbjct: 532  QVTYTGKVGDARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMP--LLETLF 589

Query: 1364 ECGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1185
             CGM+KL DD ++ L GK K+ LDGDWVG+C+DS+ FVSKLRRKRRR EVP+QVE+K+D+
Sbjct: 590  RCGMQKLVDDCATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDE 649

Query: 1184 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-----DFSFQSLLDSGVIEFIGPEEEED 1020
               EVRIF DAGRI+RPLLVV NLK IK L G     D+ FQ+LLD G+IE IGPEEEED
Sbjct: 650  QQDEVRIFSDAGRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELIGPEEEED 709

Query: 1019 CQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQ 840
            C+TAWG+++L  A+ +NPPV YTHCELD SFLLGLSCGLIPFANHDHARRVLYQSEKHSQ
Sbjct: 710  CRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQ 769

Query: 839  QAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQC 660
            QAIG+ST NP+IR+DTN+HQLYYPQRPLF T+L+D LGK K + HQ+ ML RPE++NGQC
Sbjct: 770  QAIGFSTVNPNIRVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQRGMLSRPEYYNGQC 829

Query: 659  AIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFG 480
            AIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHVRSYKAEV+N EA GKK K +D V+FG
Sbjct: 830  AIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNMEATGKKSKAEDSVNFG 889

Query: 479  KTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSS 300
            KTQSKIGRVD L+DDG PY+GANLQ+GDI+IGK A SG DHS+K+KHTE+GMVQKV+LS+
Sbjct: 890  KTQSKIGRVDCLDDDGLPYIGANLQSGDIIIGKFAESGADHSVKMKHTEKGMVQKVLLSA 949

Query: 299  NDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHA 120
            NDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHA
Sbjct: 950  NDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHA 1009

Query: 119  FPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            FPSRQTPGQ                KYATPFS  SV+ I
Sbjct: 1010 FPSRQTPGQLLEAALGKGIALGGGEKYATPFSALSVDAI 1048


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1419 bits (3672), Expect = 0.0
 Identities = 697/994 (70%), Positives = 825/994 (82%), Gaps = 7/994 (0%)
 Frame = -3

Query: 2963 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 2784
            L++ YLK FC+K A SFF +YGLI HQINS+NDF+K+GIQ+VFDS GEI VEP +DPSK+
Sbjct: 41   LNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR 100

Query: 2783 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 2604
            G+GDWRYAS++FGKVTLE P  +AGE     DG +E L   PR+ARLQNMTYSSR+K + 
Sbjct: 101  GEGDWRYASVRFGKVTLERPRVWAGES----DG-KESLNFLPRHARLQNMTYSSRMKAQV 155

Query: 2603 HLQVYTKGLSRSDKFKTGVEN-FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDC 2427
            H QVYT+ L RSDK+KTG +N +V+K V+ + + D++ GR+PVMVKS+LCWMN  E+ DC
Sbjct: 156  HFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDC 215

Query: 2426 EFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVEN 2250
            E+D GGYF+IKGAEKTFIAQEQ+CL RLWV+  PTW VAYRP+ KRKRVY+KL P K EN
Sbjct: 216  EYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDEN 275

Query: 2249 IMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNADK 2070
              G +K+LTVYF  TE PIW+LFFALG S+D+EVV+LID +I+D+ I+NIL+ASI+ AD+
Sbjct: 276  NRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADR 335

Query: 2069 KYEG----FRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 1902
            + E     FR++GNA+  ++ L+KS K PP ES++ECI  YLFPN S  +QKA  L YMV
Sbjct: 336  EAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMV 395

Query: 1901 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 1722
            KCLL+AY GRRK DNRDD RNK            L++HI+HAER MVK++QR+L  DR+L
Sbjct: 396  KCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDL 455

Query: 1721 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 1542
            +PIE+YLDASIITNGLSRAFSTG WSHP+K+MER+SGVVAT+RRTNPLQ TADMRKTRQQ
Sbjct: 456  RPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQ 515

Query: 1541 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1362
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST +L  + L+ +  +
Sbjct: 516  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVL--DPLVDKLFD 573

Query: 1361 CGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1182
            CGMEKL DD S+ L GK+K+FLDGDWVG+C+D  SFV +LR KRR  E+P QVEIK+D+ 
Sbjct: 574  CGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQ 633

Query: 1181 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1005
             GEVRIF DAGRILRPLLVV+NLKK+K  KGD F+FQSLLD G++E IG EEEEDC TAW
Sbjct: 634  QGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAW 693

Query: 1004 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 825
            GIK+L     D+PPV+YTHCELD SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+
Sbjct: 694  GIKYLLKGH-DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGF 752

Query: 824  STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 645
            STTNP+IR+DT SHQLYYPQRPLFRT+++DCLGK   S+  K ++PRPE+FNGQ AIVAV
Sbjct: 753  STTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAV 812

Query: 644  NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 465
            NVHLGYNQEDSLVMNRASLERGMFR+EH+RSYK+EV+N E+  KK+K +D V FGK QSK
Sbjct: 813  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSK 872

Query: 464  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 285
            IGRVDSL+DDGFP++GANLQ GDIVIG+ A SGVDHSIKLKHTERGMVQKVV+S+ND+GK
Sbjct: 873  IGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGK 932

Query: 284  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 105
            NFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 933  NFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 992

Query: 104  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            TPGQ               L++ATPFST SV+ I
Sbjct: 993  TPGQLLEAALGKGIACGGLLRHATPFSTLSVDAI 1026


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1399 bits (3622), Expect = 0.0
 Identities = 692/994 (69%), Positives = 817/994 (82%), Gaps = 7/994 (0%)
 Frame = -3

Query: 2963 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 2784
            L++ YLK FC+K A SFF +YGLI HQINS+NDF+K+GIQ+VFDS GEI VEP +DPSK+
Sbjct: 77   LNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKR 136

Query: 2783 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 2604
            G+GDWRYAS++FGKVTLE P  +AGE     DG +E L   PR+ARLQNMTYSSR+K + 
Sbjct: 137  GEGDWRYASVRFGKVTLERPRVWAGES----DG-KESLNFLPRHARLQNMTYSSRMKAQV 191

Query: 2603 HLQVYTKGLSRSDKFKTGVEN-FVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDC 2427
            H QVYT+ L RSDK+KTG +N +V+K V+ + + D++ GR+PVMVKS+LCWMN  E+ DC
Sbjct: 192  HFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDC 251

Query: 2426 EFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-KVEN 2250
            E+D GGYF+IKGAEKTFIAQEQ+CL RLWV+  PTW VAYRP+ KRKRVY+KL P K EN
Sbjct: 252  EYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDEN 311

Query: 2249 IMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNADK 2070
              G +K+LTVYF  TE PIW+LFFALG S+D+EVV+LID +I+D+ I+NIL+ASI+ AD+
Sbjct: 312  NRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADR 371

Query: 2069 KYEG----FRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 1902
            + E     FR++GNA+  ++ L+KS K PP ES++ECI  YLFPN S  +QKA  L YMV
Sbjct: 372  EAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMV 431

Query: 1901 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 1722
            KCLL+AY GRRK DNRDD RNK            L++HI+HAER MVK++QR+L  DR+L
Sbjct: 432  KCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDL 491

Query: 1721 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 1542
            +PIE+YLDASIITNGLSRAFSTG WSHP+K+MER+SGVVAT+RRTNPLQ TADMRKTRQQ
Sbjct: 492  RPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQ 551

Query: 1541 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1362
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA  GLVST +L  + L+ +  +
Sbjct: 552  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVL--DPLVDKLFD 609

Query: 1361 CGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1182
            CGMEKL DD S+ L GK+K+FLDGDWVG+C+D  SFV +LR KRR  E+P QVEIK+D+ 
Sbjct: 610  CGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQ 669

Query: 1181 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1005
             GEVRIF DAGRILRPLLVV+NLKK+K  KGD F+FQSLLD G++E IG EEEEDC TAW
Sbjct: 670  QGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAW 729

Query: 1004 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 825
            GIK+L     D+PPV+YTHCELD SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+
Sbjct: 730  GIKYLLKGH-DDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGF 788

Query: 824  STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 645
            STTNP+IR+DT SHQLYYPQRPLFRT+++D              LPRPE+FNGQ AIVAV
Sbjct: 789  STTNPNIRVDTLSHQLYYPQRPLFRTMISD--------------LPRPEYFNGQIAIVAV 834

Query: 644  NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 465
            NVHLGYNQEDSLVMNRASLERGMFR+EH+RSYK+EV+N E+  KK+K +D V FGK QSK
Sbjct: 835  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSK 894

Query: 464  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 285
            IGRVDSL+DDGFP++GANLQ GDIVIG+ A SGVDHSIKLKHTERGMVQKVV+S+ND+GK
Sbjct: 895  IGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGK 954

Query: 284  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 105
            NFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 955  NFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 1014

Query: 104  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            TPGQ               L++ATPFST SV+ I
Sbjct: 1015 TPGQLLEAALGKGIACGGLLRHATPFSTLSVDAI 1048


>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
            gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
            RNA polymerases IV and V subunit 2-like [Citrus sinensis]
            gi|557545145|gb|ESR56123.1| hypothetical protein
            CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score = 1356 bits (3510), Expect = 0.0
 Identities = 667/1001 (66%), Positives = 800/1001 (79%), Gaps = 9/1001 (0%)
 Frame = -3

Query: 2978 SAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSF 2799
            ++++ L E +LK FCRKAA SFF +YGL+SHQINSYN+F+K+G+Q+ FDS GE  VEP +
Sbjct: 37   TSLRDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY 96

Query: 2798 DPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSR 2619
            DPSKKG+G+WRYAS++FG+VTL+ P+FFAG      +G  EH  + PR+ARLQNMTYSSR
Sbjct: 97   DPSKKGEGEWRYASMRFGQVTLDKPSFFAG------NGGDEH-DMFPRHARLQNMTYSSR 149

Query: 2618 IKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSE 2439
            +KV+   QVYT+    SDKFKTG E ++ K VL+D  +D+I GR+PVMVKSDLCWM   E
Sbjct: 150  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVE 209

Query: 2438 KRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP- 2262
            K DC+FD GGYF+IKGAEK F+AQEQ+CL RLWV+ +  WTVAY+  +KR R+ ++LV  
Sbjct: 210  KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 269

Query: 2261 -KVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASI 2085
             K E+I G +K+L+VYF  TE PIW+LFFALGVS+D+E+VNLID   ED +I NIL ASI
Sbjct: 270  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 329

Query: 2084 YNADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYM 1905
            ++AD K + FRK  NA+K+++ L+K    PP ES EEC+  YLFP+L   +QKA  L YM
Sbjct: 330  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 389

Query: 1904 VKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRE 1725
            VKCLL+AY GRRK DNRDD RNK            LK+HI HA + M K++QRDL  DR 
Sbjct: 390  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 449

Query: 1724 LQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQ 1545
            ++PIE+YLDASI+TNGLSRAFSTGAWSHP+K+ ER+SG+VA + R NPLQ   D+R+TRQ
Sbjct: 450  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 509

Query: 1544 QVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFR 1365
            QV YTG+VGDARYPHPSHWGKICFLSTPDGENCGLVKNL   GLVST+IL  E + ++  
Sbjct: 510  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLF 567

Query: 1364 ECGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1185
              GMEKL DD S  L GK K+F+DGDW+G+CKDS SFVS+LRRKRRR E+P QVEIK+D+
Sbjct: 568  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 627

Query: 1184 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFSFQSLLDSGVIEFIGPEEEEDCQTA 1008
               EVRIF+DAGRILRPLLVV+N+ KIK L+G +++FQ+LLD G+IE +G EEEEDC TA
Sbjct: 628  LQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA 687

Query: 1007 WGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 828
            WGIK+L     D  P+++THCELD SFLLGLSCG+IPFANHDHARRVLYQS+KHS QAIG
Sbjct: 688  WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 747

Query: 827  YSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVA 648
            + TTNPSIR+DT SHQL+YPQRPLFRT+++DCLGK     +   +LPRPE +NGQ AIVA
Sbjct: 748  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH--ILPRPELYNGQNAIVA 805

Query: 647  VNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQS 468
            VNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E   K++  DD+V+FGK QS
Sbjct: 806  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 865

Query: 467  KIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEG 288
            KIGRVDSL+DDGFP++GANLQ GDIVIGK+A SG DHSIKLKHTERGMVQKVVLSSND+G
Sbjct: 866  KIGRVDSLDDDGFPFIGANLQCGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDG 925

Query: 287  KNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSR 108
            KNF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSR
Sbjct: 926  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 985

Query: 107  QTPGQ------XXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            QTPGQ                      +YATPF+TPSV+ I
Sbjct: 986  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1026


>gb|EOY29338.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1073

 Score = 1344 bits (3479), Expect = 0.0
 Identities = 665/994 (66%), Positives = 791/994 (79%), Gaps = 3/994 (0%)
 Frame = -3

Query: 2975 AMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFD 2796
            ++Q L E +L+ FC++AA SFF++YGLISHQ+NSYN F+K+G+Q  FDS GE  +   +D
Sbjct: 28   SVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYD 87

Query: 2795 PSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 2616
            PSKKG+GDWR+A ++FGKVT+E PTF+A      V G  E L + PR+ARLQNMTYSSR+
Sbjct: 88   PSKKGEGDWRHARVRFGKVTVERPTFWA------VSGGNE-LNMLPRHARLQNMTYSSRM 140

Query: 2615 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 2436
            KV   LQVYT    +SDKFKTG E FV++ V+   + D+I GR+PVMV+SDLCWMN  EK
Sbjct: 141  KVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEK 200

Query: 2435 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-- 2262
             DC+FD GGYF+IKG EK FIAQEQ+ + RLW++ +  WT+AYR   KR R+ I+LV   
Sbjct: 201  ADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENS 260

Query: 2261 KVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2082
            KVE I G +K+LTVYF  TE P+WVLFFALGVS+D+EVVNLID +  DS+I NIL ASI 
Sbjct: 261  KVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIR 320

Query: 2081 NADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 1902
            NAD K   F +  NA+ ++  L+K  + PP+E +EEC+  YLFP L S +QKA  L YMV
Sbjct: 321  NADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMV 380

Query: 1901 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 1722
            KCLL+AY GR K DNRDD RNK            LK+HI HA R M K++QRDL  DR +
Sbjct: 381  KCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTV 440

Query: 1721 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 1542
            +PIEHYLDASI+TNGLSRAFSTGAWSHPYK+MER+SGVVA + R NPLQ   D+RKTRQQ
Sbjct: 441  RPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQ 500

Query: 1541 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1362
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST I+  ES++ +  +
Sbjct: 501  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIM--ESIVDKLFD 558

Query: 1361 CGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1182
             GME+L +D  S LDGK K+FL+G+WVG+C+DS SF +++RRKRR  E P+QVEIK+D+H
Sbjct: 559  SGMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEH 618

Query: 1181 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1005
             GEVRIF D GRILRPLLVV NL +IK  KG+ ++FQ+LL+ G+IE +G EEEEDC+TAW
Sbjct: 619  KGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAW 678

Query: 1004 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 825
             IK+L T      PV+YTHCELD SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+
Sbjct: 679  SIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGF 738

Query: 824  STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 645
            STTNP+IR+DT SHQLYYPQRPLFRT+ +DCLGK      QK +LP+PE +NGQ AIVAV
Sbjct: 739  STTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAV 798

Query: 644  NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 465
            NVHLGYNQEDSLVMNR+SLERGMFR+EHVRSYKAEV+N E   K++K +D+V+FGK QSK
Sbjct: 799  NVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSK 858

Query: 464  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 285
            IGRVDSL+DDGFPYVGANLQ GDIVIG+ A SG DHSIKLKHTERGMVQKVVLSSND+GK
Sbjct: 859  IGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGK 918

Query: 284  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 105
            N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 919  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQ 978

Query: 104  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            TPGQ               +KYATPFST SV+ I
Sbjct: 979  TPGQLLEAALGKGIACGGSMKYATPFSTISVDAI 1012


>gb|EOY29336.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1184

 Score = 1344 bits (3479), Expect = 0.0
 Identities = 665/994 (66%), Positives = 791/994 (79%), Gaps = 3/994 (0%)
 Frame = -3

Query: 2975 AMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFD 2796
            ++Q L E +L+ FC++AA SFF++YGLISHQ+NSYN F+K+G+Q  FDS GE  +   +D
Sbjct: 28   SVQQLGEEFLRGFCKQAAVSFFKEYGLISHQLNSYNAFIKYGLQNTFDSFGEFLIHSGYD 87

Query: 2795 PSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 2616
            PSKKG+GDWR+A ++FGKVT+E PTF+A      V G  E L + PR+ARLQNMTYSSR+
Sbjct: 88   PSKKGEGDWRHARVRFGKVTVERPTFWA------VSGGNE-LNMLPRHARLQNMTYSSRM 140

Query: 2615 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 2436
            KV   LQVYT    +SDKFKTG E FV++ V+   + D+I GR+PVMV+SDLCWMN  EK
Sbjct: 141  KVNVDLQVYTAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEK 200

Query: 2435 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP-- 2262
             DC+FD GGYF+IKG EK FIAQEQ+ + RLW++ +  WT+AYR   KR R+ I+LV   
Sbjct: 201  ADCDFDHGGYFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENS 260

Query: 2261 KVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2082
            KVE I G +K+LTVYF  TE P+WVLFFALGVS+D+EVVNLID +  DS+I NIL ASI 
Sbjct: 261  KVEYIKGGEKVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIR 320

Query: 2081 NADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 1902
            NAD K   F +  NA+ ++  L+K  + PP+E +EEC+  YLFP L S +QKA  L YMV
Sbjct: 321  NADGKCYKFCQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMV 380

Query: 1901 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 1722
            KCLL+AY GR K DNRDD RNK            LK+HI HA R M K++QRDL  DR +
Sbjct: 381  KCLLQAYTGRLKCDNRDDFRNKRLELAGELLERELKVHIAHARRRMAKTLQRDLYADRTV 440

Query: 1721 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 1542
            +PIEHYLDASI+TNGLSRAFSTGAWSHPYK+MER+SGVVA + R NPLQ   D+RKTRQQ
Sbjct: 441  RPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRQQ 500

Query: 1541 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1362
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST I+  ES++ +  +
Sbjct: 501  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIM--ESIVDKLFD 558

Query: 1361 CGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1182
             GME+L +D  S LDGK K+FL+G+WVG+C+DS SF +++RRKRR  E P+QVEIK+D+H
Sbjct: 559  SGMEELVNDTCSSLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQVEIKRDEH 618

Query: 1181 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1005
             GEVRIF D GRILRPLLVV NL +IK  KG+ ++FQ+LL+ G+IE +G EEEEDC+TAW
Sbjct: 619  KGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEEEEDCRTAW 678

Query: 1004 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 825
             IK+L T      PV+YTHCELD SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+
Sbjct: 679  SIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGF 738

Query: 824  STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 645
            STTNP+IR+DT SHQLYYPQRPLFRT+ +DCLGK      QK +LP+PE +NGQ AIVAV
Sbjct: 739  STTNPNIRVDTLSHQLYYPQRPLFRTMTSDCLGKLGHPLGQKGVLPKPELYNGQNAIVAV 798

Query: 644  NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 465
            NVHLGYNQEDSLVMNR+SLERGMFR+EHVRSYKAEV+N E   K++K +D+V+FGK QSK
Sbjct: 799  NVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAEVDNKEIQDKRRKSEDIVNFGKIQSK 858

Query: 464  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 285
            IGRVDSL+DDGFPYVGANLQ GDIVIG+ A SG DHSIKLKHTERGMVQKVVLSSND+GK
Sbjct: 859  IGRVDSLDDDGFPYVGANLQCGDIVIGRCAESGADHSIKLKHTERGMVQKVVLSSNDDGK 918

Query: 284  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 105
            N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 919  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTTQGIVPDIVINPHAFPSRQ 978

Query: 104  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            TPGQ               +KYATPFST SV+ I
Sbjct: 979  TPGQLLEAALGKGIACGGSMKYATPFSTISVDAI 1012


>gb|EMJ26641.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score = 1336 bits (3457), Expect = 0.0
 Identities = 664/1002 (66%), Positives = 799/1002 (79%), Gaps = 7/1002 (0%)
 Frame = -3

Query: 2987 ELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVE 2808
            +  +++  L EG+LK FC++AA +FF +YGLISHQINSYNDF+K+GIQ+VFDS GEI VE
Sbjct: 38   DYSTSIHDLGEGFLKFFCKEAAIAFFNEYGLISHQINSYNDFIKNGIQRVFDSFGEIIVE 97

Query: 2807 PSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTY 2628
            P +DPSKKG+ +WRYAS+KFGKVTL  P+F+ G      D  +E+ K+ PR+ARLQNM+Y
Sbjct: 98   PGYDPSKKGESEWRYASVKFGKVTLGMPSFWGGS-----DDEKEY-KMLPRHARLQNMSY 151

Query: 2627 SSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMN 2448
            +S++KV   ++VYT+ L  SDKFKTG   ++DK +L+    D+I G +PVMVKSDLCWM 
Sbjct: 152  ASKMKVNITVEVYTQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMK 211

Query: 2447 SSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKL 2268
              EK DC+FD GGYF+IKGAEKTFIAQEQ CL RL +T     TVAYR   KR R+ I+L
Sbjct: 212  DFEKGDCDFDHGGYFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRL 271

Query: 2267 V--PKVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILI 2094
            V   K+ENI G +K+LTVYF  TE P+W+ FFALGVS+DREV+NLID D ED++I+NIL 
Sbjct: 272  VGISKLENIEGVEKVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILF 331

Query: 2093 ASIYNADKKYE----GFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQK 1926
            ASI +ADK  +    GFR+  NA+K+++++++    PP ES+EECI  YLFPNL   +QK
Sbjct: 332  ASIRDADKLNDKVDGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQK 391

Query: 1925 ACLLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQR 1746
            A  L YMVK LL+AY GRRK DNRDD RNK            LK HI HA R M K++QR
Sbjct: 392  ARFLGYMVKSLLQAYAGRRKCDNRDDFRNKRLDLAGELLERELKAHIGHARRRMAKALQR 451

Query: 1745 DLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATA 1566
            DL  DR ++PIEHYLDASI+TNG+SRAFSTGAW HP+K+MER+SGVVAT+ R NPLQ   
Sbjct: 452  DLYGDRAVRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTMV 511

Query: 1565 DMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQE 1386
            DMRKTRQQV YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+ GLVST +L  E
Sbjct: 512  DMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVL--E 569

Query: 1385 SLLQRFRECGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQ 1206
            SL+ +   CGMEKL DD  + L GK K+FL+GDWVG+C+DS SFV +LRR RRR ++P+Q
Sbjct: 570  SLIPQLLTCGMEKLVDDTFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQ 629

Query: 1205 VEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEE 1029
            VEIK+D H GEVRIF DAGRILRPLLVV+NL K+K  KG   SFQ  LD+G+IE IG EE
Sbjct: 630  VEIKRDVHQGEVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEE 689

Query: 1028 EEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEK 849
            EEDC TAWGIK+LF  +      ++THCELD SFLLGLSCG+IP+ANHDHARRVLYQ++K
Sbjct: 690  EEDCSTAWGIKYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQK 749

Query: 848  HSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFN 669
            HSQQAIG+STTNP++R+DT SHQL+YPQRPLF+T+ +DCLGK     H + ++P+PE++N
Sbjct: 750  HSQQAIGFSTTNPNLRVDTLSHQLHYPQRPLFQTMTSDCLGKP--GRHNR-IVPKPEYYN 806

Query: 668  GQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLV 489
            GQ AIVAVNVHLG+NQEDS+VMNRASLERGMFR+EH+RSYKAEV+N E+  K++K DD V
Sbjct: 807  GQNAIVAVNVHLGFNQEDSIVMNRASLERGMFRSEHIRSYKAEVDNKESLDKRRKPDDCV 866

Query: 488  SFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVV 309
            +FGK QSK GRVDSL+DDGFPYVGANLQ+GDI+IG+ + SG DHSIKLKHTERGMVQKV+
Sbjct: 867  NFGKMQSKFGRVDSLDDDGFPYVGANLQSGDIIIGRCSESGADHSIKLKHTERGMVQKVL 926

Query: 308  LSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVIN 129
            LSSND+GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVIN
Sbjct: 927  LSSNDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVIN 986

Query: 128  PHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            PHAFPSRQTPGQ                +YATPFST SV+DI
Sbjct: 987  PHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDI 1028


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
            vesca subsp. vesca]
          Length = 1201

 Score = 1311 bits (3393), Expect = 0.0
 Identities = 654/998 (65%), Positives = 782/998 (78%), Gaps = 3/998 (0%)
 Frame = -3

Query: 2987 ELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVE 2808
            E  + +  L E +L  FC++A+ SFF++YGL+SHQINSYNDFV++GIQ+VFDS GEI VE
Sbjct: 41   EDSTTLHDLGEVFLDEFCKEASVSFFKEYGLLSHQINSYNDFVENGIQRVFDSFGEIVVE 100

Query: 2807 PSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTY 2628
            P+FDPSKKG+ DWR+A++KFGKVTL  P F+ G      D  +E+  L PR+ARLQNMTY
Sbjct: 101  PNFDPSKKGNADWRFAAIKFGKVTLSKPCFWGGS-----DSDKEYNML-PRHARLQNMTY 154

Query: 2627 SSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMN 2448
            S+R+ V   +QVYT+ L  SDKFKTG E  ++KT L+    D+I GR+PVMVKS+LCWM 
Sbjct: 155  SARMSVNITVQVYTQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMK 214

Query: 2447 SSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKL 2268
              EK DCEFDQGGYF+I GAEKTFIAQEQ CL RL +T +   TVAYR   KR R+ I+L
Sbjct: 215  GVEKGDCEFDQGGYFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRL 274

Query: 2267 --VPKVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILI 2094
              + K+EN+ G +K+L+VYF  TE P+W+ FFALGVS+D+EV++LID  IED++I+NIL 
Sbjct: 275  SGISKLENVEGVEKVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILF 334

Query: 2093 ASIYNADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLL 1914
            ASI +AD++ + FR+  NA++++E+ +KS   PP ESVE+CI  YLFPN+   +QKA  L
Sbjct: 335  ASIRDADERKDDFRRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFL 394

Query: 1913 AYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDR 1734
             YMVKCLL+   G RK DNRDD RNK            LK H+ HA R M K++QRDL  
Sbjct: 395  GYMVKCLLQTSIGLRKCDNRDDFRNKRLELAGELLERELKAHVSHARRKMAKALQRDLGG 454

Query: 1733 DRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRK 1554
            D  ++P+EHYLDASI+TNG+SRAFSTGAW HP+K+MER+SGVVA I R NPLQ   DMRK
Sbjct: 455  DHVVRPVEHYLDASIVTNGVSRAFSTGAWCHPFKRMERISGVVANIGRANPLQTMIDMRK 514

Query: 1553 TRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQ 1374
            TRQQV YTG+ GDARYPHPSHWGK+CFLSTPDGENCGLVKNLA+  LVS  I   E +L 
Sbjct: 515  TRQQVQYTGKAGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTALVSINI--SEPILP 572

Query: 1373 RFRECGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIK 1194
            +  +CG+E+L DD  + L GKHK+FL+GDWVGIC DS  FV+KLRR RR  ++P+QVEIK
Sbjct: 573  KLFKCGIEELVDDTYTSLAGKHKVFLNGDWVGICVDSHGFVTKLRRLRRSKKLPHQVEIK 632

Query: 1193 KDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDC 1017
            +D+H GEVRIF DAGRILRPLLVVQ LKKIK  KG+  +FQ  LD G+IEFIG EEEEDC
Sbjct: 633  RDEHKGEVRIFSDAGRILRPLLVVQGLKKIKAAKGEKHTFQDFLDKGIIEFIGAEEEEDC 692

Query: 1016 QTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQ 837
            +TAW IK+LF  E     V+YTHCELD SFLLGLSCG+IPFANHDHARRVLYQS+KHSQQ
Sbjct: 693  RTAWAIKYLFMEE-QGSVVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSQQ 751

Query: 836  AIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCA 657
            AIGYSTTNP++R+DT SH L+YPQRPLFRT++AD LGK          +P+PE+FNGQ A
Sbjct: 752  AIGYSTTNPNLRVDTLSHNLHYPQRPLFRTMIADSLGKPGYPVGHNGFMPKPEYFNGQNA 811

Query: 656  IVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGK 477
            IVAVNVHLGYNQEDS+VMNRASLERGMFR+EH+RSYKAEVEN  +  K++K D+ V+FGK
Sbjct: 812  IVAVNVHLGYNQEDSIVMNRASLERGMFRSEHIRSYKAEVENKLSLEKRRKPDECVNFGK 871

Query: 476  TQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSN 297
             QSK GRVD+L+DDGFP VGA+LQ+GDI+IG+ + SG DHSIKLKHTERGMVQKVVLSSN
Sbjct: 872  IQSKFGRVDNLDDDGFPCVGASLQSGDIIIGRCSESGTDHSIKLKHTERGMVQKVVLSSN 931

Query: 296  DEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAF 117
            D GKNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLE QENFPFT QGIVPDIVINPHAF
Sbjct: 932  DAGKNFAVVSLRQVRSPSLGDKFSSMHGQKGVLGFLEYQENFPFTIQGIVPDIVINPHAF 991

Query: 116  PSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            PSRQTPGQ                +YATPFST SV+DI
Sbjct: 992  PSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDI 1029


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score = 1309 bits (3388), Expect = 0.0
 Identities = 648/937 (69%), Positives = 768/937 (81%), Gaps = 34/937 (3%)
 Frame = -3

Query: 2963 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 2784
            L  G+L+ FC+KA+  FFEKYG+ISHQI+SYNDF+++GIQ+VFDSVGEI VEP +DPSKK
Sbjct: 63   LGGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSKK 122

Query: 2783 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 2604
            G+GDW++AS+KFGKVTL+ P F+AGEKFS+ +G +E+L L PR+ARLQNMTYS+RI VET
Sbjct: 123  GEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNG-EEYLNLWPRHARLQNMTYSARIIVET 181

Query: 2603 HLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCE 2424
            H  V+TK L RSDKFKTGVE FVDK  + +   DV  GR+PVMV S+LCWM+ +++ DCE
Sbjct: 182  H--VFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCE 239

Query: 2423 FDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVEN 2250
            FD GGYF++KGAEK FIAQEQ+CL RLWV+   TW VAYR   KR RVY+KL    K E+
Sbjct: 240  FDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEH 299

Query: 2249 IMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNADK 2070
            I G  K L+VYF+  E PIWVLFFALGVS+DREVV+LID+DI+D+ I NIL+ASI++ADK
Sbjct: 300  IKGEAKALSVYFFA-EMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADK 358

Query: 2069 KYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLL 1890
              E FRK   A+ +++ L+KS K PP+ESVEECIK YLFPNLS  +QKA  L YMVKCLL
Sbjct: 359  NCEDFRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLL 418

Query: 1889 EAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIE 1710
             +Y GRRKVDNRDD RNK            L++H+KHAER MVK++QRDL  DR++QPIE
Sbjct: 419  LSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAERRMVKALQRDLCGDRQVQPIE 478

Query: 1709 HYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYT 1530
            HYLDASIITNGLSRAFSTG W HPYK+MERVSGVVAT+RRTNPLQ TAD+RKTRQQV+YT
Sbjct: 479  HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYT 538

Query: 1529 GRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGME 1350
            G+VGDARYPHPSHWGK+CFLSTPDGENCGLVKNLASMGLVSTT+L+   LL+    CGM+
Sbjct: 539  GKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKP--LLETLFRCGMQ 596

Query: 1349 KLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQ------------ 1206
            KL DD ++ L GK K+ LDGDWVG+C+DS+ FVSKLRR+RRR EVP+Q            
Sbjct: 597  KLVDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRQRRRNEVPHQLAHTLAIPPGIC 656

Query: 1205 ---------------VEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLK-----GD 1086
                           VE+K+D+   EVRIF DAGRI+RPLLVV NLK IK LK     GD
Sbjct: 657  YLLPTHVPVTLTEAQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKALKDGMKGGD 716

Query: 1085 FSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCG 906
            + FQ+LLD G+IE IGPEEEEDC+TAWG+++L  A+ +NPPV YTHCELD SFLLGLSCG
Sbjct: 717  YGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCG 776

Query: 905  LIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLG 726
            LIPFANHDHARRVLYQSEKHSQQAIG+ST NP+ R+DTN+HQLYYPQRPLF T+L+D LG
Sbjct: 777  LIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDSLG 836

Query: 725  KSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYK 546
            K K + HQK ML RPE++NGQCAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHVRSYK
Sbjct: 837  KPKCARHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYK 896

Query: 545  AEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASG 366
            AEV+N EA GKK K++D V+FGKTQSKIGRVDSL+DDGFP++GANLQ+GDI+IGK+A SG
Sbjct: 897  AEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKYAESG 956

Query: 365  VDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQV 255
             DHS+K+KHTERGMVQKV+LS+ND+GKNFAVVSLRQV
Sbjct: 957  ADHSVKMKHTERGMVQKVLLSANDDGKNFAVVSLRQV 993


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1181

 Score = 1306 bits (3381), Expect = 0.0
 Identities = 642/985 (65%), Positives = 777/985 (78%), Gaps = 3/985 (0%)
 Frame = -3

Query: 2948 LKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKKGDGDW 2769
            L+ FC+KAA+ FF++YGLISHQINSYN F+  G+Q+VFDS GE+ VEP +D SK+ DG+W
Sbjct: 44   LQSFCKKAASLFFDEYGLISHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEW 103

Query: 2768 RYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVETHLQVY 2589
            R AS++FGKVTL+ P+F+ G    +     EH  + PR+ARLQNMTYS+R+K+  ++QVY
Sbjct: 104  RRASVRFGKVTLDRPSFWGGTSSDA-----EH-NMFPRHARLQNMTYSARMKIHVNVQVY 157

Query: 2588 TKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGG 2409
            T+ + RSDKFKTG++  V K V++  + ++I GR+PVMVKSDLCW+ + EK DC+FD GG
Sbjct: 158  TQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGG 217

Query: 2408 YFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KVENIMGAD 2235
            YF+IKGAEK FIAQEQ+C+ RLW++ +  WTV+Y+   KR R+ ++LV   K+E I G  
Sbjct: 218  YFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEK 277

Query: 2234 KILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNADKKYEGF 2055
            K L VYF  TE P+W+LFFALGV +D+EV++LID    D++I NI  ASI++AD+K E F
Sbjct: 278  KGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHF 337

Query: 2054 RKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMVKCLLEAYRG 1875
            R+E  A+ +++ L+K  + PPKES+E+ I  YLFP L+S R KA  L YMVKCLLEAY G
Sbjct: 338  RREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTG 397

Query: 1874 RRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDRELQPIEHYLDA 1695
             RK DNRD  RNK            LK+H+ HA R M K++QRDL  DR++ PIEHYLDA
Sbjct: 398  HRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDA 457

Query: 1694 SIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQVSYTGRVGD 1515
            SI+TNGL+RAFSTGAW HP+K MERVSGVV  + R NPLQ   D+RKTRQQV YTG+VGD
Sbjct: 458  SIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGD 517

Query: 1514 ARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRECGMEKLDDD 1335
            ARYPHPSHWG++CFLSTPDGENCGLVKNLA  G+VST I   ESL+ +  + GMEKL DD
Sbjct: 518  ARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNI--SESLVDKLFDSGMEKLVDD 575

Query: 1334 MSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKHHGEVRIFID 1155
              + LDGKHK+FL+G+WVG+C+DS  FV +LR  RRR E+PYQVEIK+D+   EVRIF D
Sbjct: 576  TYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIFSD 635

Query: 1154 AGRILRPLLVVQNLKKIKDLK-GDFSFQSLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAE 978
            AGRILRPLLVV+NL KIK  K G++ F SLLD G+IEFIG EEEEDC TAWGIK L    
Sbjct: 636  AGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADI 695

Query: 977  LDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNPSIRI 798
                P++Y+HCELD SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+STTNP+IR+
Sbjct: 696  EGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRV 755

Query: 797  DTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQE 618
            DT SHQL+YPQRPLFRT+++DCL           +LP+PE FNGQ AIVAVNVHLGYNQE
Sbjct: 756  DTLSHQLHYPQRPLFRTMISDCL-----------VLPKPELFNGQNAIVAVNVHLGYNQE 804

Query: 617  DSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSKIGRVDSLED 438
            DSLVMNRASLERGMFR+EH+RSYKAEV+N E   K++K +D ++FGK QSKIGRVDSL+D
Sbjct: 805  DSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDD 864

Query: 437  DGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ 258
            DGFP++GAN+Q+GDIVIGK A SG DHS+KLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ
Sbjct: 865  DGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ 924

Query: 257  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXX 78
            VRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVINPHAFPSRQTPGQ     
Sbjct: 925  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAA 984

Query: 77   XXXXXXXXXXLKYATPFSTPSVEDI 3
                       +YATPFST SV+DI
Sbjct: 985  LGKGIACGGSKRYATPFSTLSVDDI 1009


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1297 bits (3356), Expect = 0.0
 Identities = 647/1017 (63%), Positives = 784/1017 (77%), Gaps = 3/1017 (0%)
 Frame = -3

Query: 3044 STQMEIXXXXXXXXXXXXDELGSAMQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYND 2865
            ST M+I             +  +++  + E  LK FC KAAT FF +YGLISHQINSYND
Sbjct: 27   STDMDIDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYND 86

Query: 2864 FVKHGIQQVFDSVGEITVEPSFDPSKKGDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDG 2685
            F+ +GIQ+ FDS GE+ VEP +DPSKKG+ +WRYAS+KFGKV LE PTF++G        
Sbjct: 87   FINNGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALEKPTFWSGA------- 139

Query: 2684 FQEHLKLSPRYARLQNMTYSSRIKVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHS 2505
              EH K+ PR+ARLQNMTYSS++KV   ++VYT+ + RSDKFKTG + +VDK VLN  + 
Sbjct: 140  -DEH-KMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGKDQYVDKEVLNTDNR 197

Query: 2504 DVIFGRLPVMVKSDLCWMNSSEKRDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTP 2325
            ++  G LPVMVKSDLCWM ++EK DC+FD GGYF+IKGAEK FIAQEQ+CL RLW++   
Sbjct: 198  NITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQ 257

Query: 2324 TWTVAYRPVSKRKRVYIKLV--PKVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDRE 2151
             WTV+Y+   KR R+ ++LV    +E++    K LTVYF  TE P+W+LFFALGV++D+E
Sbjct: 258  GWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPLWILFFALGVTSDKE 317

Query: 2150 VVNLIDLDIEDSAIANILIASIYNADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEEC 1971
            V++LI     D+ I NI  ASI++AD+K EGFR+   A++++   ++  + PP E+ E+ 
Sbjct: 318  VIDLIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQIRGTRFPPGEN-EDF 376

Query: 1970 IKNYLFPNLSSPRQKACLLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKI 1791
               YLFP L S RQKA  L YMVKCLL+AY G+RK +N D  RNK            LK+
Sbjct: 377  FLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKV 436

Query: 1790 HIKHAERLMVKSIQRDLDRDRELQPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSG 1611
            HI HA R M K++Q+DL  DR+++PIEHYLDASI+TNGLSRAFSTGAWSHPYK+MER+SG
Sbjct: 437  HIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISG 496

Query: 1610 VVATIRRTNPLQATADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKN 1431
            VVA + R NPLQ   D+RKTR  V YTG+VGDAR+PHPSHWG++CFLSTPDGENCGLVKN
Sbjct: 497  VVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKN 556

Query: 1430 LASMGLVSTTILQQESLLQRFRECGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFV 1251
            LA+ GLVS  IL  E L+ +    GMEK+ +D  S LD K K+FL+G+WVG+C+DS  FV
Sbjct: 557  LATTGLVSVNIL--EPLIDKLIARGMEKVPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFV 614

Query: 1250 SKLRRKRRRMEVPYQVEIKKDKHHGEVRIFIDAGRILRPLLVVQNLKKIKDLKG-DFSFQ 1074
            ++LRR RRR ++P QVEIK+D+   EVRIF DAGRILRPLLVVQNL KI+  KG + +FQ
Sbjct: 615  AELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQ 674

Query: 1073 SLLDSGVIEFIGPEEEEDCQTAWGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPF 894
            SLLD G+IEF+G EEEEDC TAWGIK L +       ++YTHCELD SFLLGLSCG+IPF
Sbjct: 675  SLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPF 734

Query: 893  ANHDHARRVLYQSEKHSQQAIGYSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKL 714
            ANHDHARRVLYQ++KHSQQAIG+ TTNP+IR+DT SHQLYYPQRPLFRT+ +DCLGK   
Sbjct: 735  ANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGD 794

Query: 713  SDHQKWMLPRPEFFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVE 534
            +     ++P+PE +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKA+V+
Sbjct: 795  TRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVD 854

Query: 533  NPEAPGKKQKIDDLVSFGKTQSKIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHS 354
            N E   K++K DD V+FGK  SKIGRVDSL+DDGFP++GANLQ+GDIVIG+ A SG DHS
Sbjct: 855  NKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHS 914

Query: 353  IKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 174
            IKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN
Sbjct: 915  IKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 974

Query: 173  FPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            FPFT+QGIVPDIVINPH+FPSRQTPGQ               +KYATPFST SVE I
Sbjct: 975  FPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAI 1031


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
            arietinum]
          Length = 1199

 Score = 1294 bits (3349), Expect = 0.0
 Identities = 648/994 (65%), Positives = 774/994 (77%), Gaps = 4/994 (0%)
 Frame = -3

Query: 2972 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDP 2793
            ++ L +  ++ FC+KA+  FF++YGLISHQINSYN F   G+Q  FDS G++TV P FDP
Sbjct: 44   LKELGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDP 103

Query: 2792 SKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 2616
            SKKGD + +RYAS+KFGKVTL+ P F+ GE      G  + +K+ PR+ARLQ MTY+S++
Sbjct: 104  SKKGDNEHYRYASVKFGKVTLDRPMFWCGE------GNTQEMKMLPRHARLQRMTYASKM 157

Query: 2615 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 2436
            KV   +QVY     RSDKFKTG E ++D+ ++ D + ++  GRLPVMVKSDLCWMN  EK
Sbjct: 158  KVNVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEK 217

Query: 2435 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVPK- 2259
             DCEFD GGYF+IKGAEK FIAQEQ+ L RLWVT  P W VAY+   KR R+ +KLV   
Sbjct: 218  GDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENT 277

Query: 2258 -VENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2082
             VE I   +K+LTVYF   E P+W+LFFALGV++D+++V+LID    D  I NIL ASI 
Sbjct: 278  TVEGIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIR 337

Query: 2081 NADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 1902
             AD+K E FR+  NA+ +IE+ +K V+ PP ES++EC+  Y+FPN+    +KA  LAYMV
Sbjct: 338  EADEKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMV 397

Query: 1901 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 1722
            K LL AY GRRK DNRDD RNK            LK+HI HA + M K++QRDL  DR++
Sbjct: 398  KVLLLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDV 457

Query: 1721 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 1542
              IEHYLDASIITNGL RAFSTGAW+HPYK+MER+SGVVAT+ RTNPLQ  A++R+TRQQ
Sbjct: 458  HQIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQ 517

Query: 1541 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1362
            V YTG+VGDARYPHPSHWGK+CFLSTPDGENCGLVKN+A  GLVST +   ES+L +   
Sbjct: 518  VQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNV--TESILPQLFA 575

Query: 1361 CGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1182
            CGME+L DD +++L  K K+FL+GDWVG+C DS+SFV++LR +RR+ E+P+QVEIK+D  
Sbjct: 576  CGMEELVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPS 635

Query: 1181 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1005
              EVRI  DAGRILRPLLVV NL KIK  K D  SFQSLLD+G+IE IGPEEEEDC+TAW
Sbjct: 636  QEEVRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAW 695

Query: 1004 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 825
            G+ +LF  E     V+YTHCELD SFLLGLSC L+PFANHDHARRVLYQS+KHS QAIG+
Sbjct: 696  GVPYLFGKE-GKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGF 754

Query: 824  STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 645
            STTNP IR+D  SHQL+YPQ+PLF+T+ +DCLGK       K +LP+ EF+NGQ AIVAV
Sbjct: 755  STTNPDIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSK-LLPKSEFYNGQNAIVAV 813

Query: 644  NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 465
            NVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYKAE EN E+  KK+K +D+V+FGK QSK
Sbjct: 814  NVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKRKPEDIVNFGKIQSK 873

Query: 464  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 285
            IGRVDSL+DDGFP+VGANLQ GDI+IG+ A SG DHSIKLKHTERG VQKVVLSSNDEGK
Sbjct: 874  IGRVDSLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGK 933

Query: 284  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 105
            NFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ
Sbjct: 934  NFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 993

Query: 104  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            TPGQ               L+ ATPFST SVE I
Sbjct: 994  TPGQLLEAALGKGIACVGSLRNATPFSTSSVEAI 1027


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
            [Glycine max]
          Length = 1205

 Score = 1283 bits (3319), Expect = 0.0
 Identities = 639/995 (64%), Positives = 777/995 (78%), Gaps = 5/995 (0%)
 Frame = -3

Query: 2972 MQGLDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDP 2793
            ++ L E  +K +C+KA+  FF++YGLISHQINS+N FV  G+Q  FDS G++ V P FDP
Sbjct: 46   LEELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDP 105

Query: 2792 SKKGDGD-WRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRI 2616
            SKKG+ + +RYAS+KFGKV L+ P F+ GE      G  +  K+ PR+AR+Q MTY+S++
Sbjct: 106  SKKGENEHFRYASVKFGKVKLDKPMFWGGE------GNAQEFKMLPRHARIQRMTYASKV 159

Query: 2615 KVETHLQVYTKGLSRSDKFKTGVENFVDKTVLNDYHSDVIFGRLPVMVKSDLCWMNSSEK 2436
            K++  +QVY     RSDKFKTG E F+D+ ++ +   ++I GRLPVMVKSDLCWM  +EK
Sbjct: 160  KIQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEK 219

Query: 2435 RDCEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLV--P 2262
             D EFD GGYF++KGAEKTFIAQEQ+ L RLWV  +P W +AY+   KR R+ IKLV   
Sbjct: 220  DDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNS 279

Query: 2261 KVENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIY 2082
            + E +   D  LTVYF   E P+WVLFFALGVS+D+E+V+LI    +D  I NIL AS+ 
Sbjct: 280  RSEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVR 339

Query: 2081 NADKKYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 1902
            +AD+K   FR+  NAV+++E  +KSV+ PP ES++EC++ Y+FP +S   +KA  LAYMV
Sbjct: 340  DADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMV 399

Query: 1901 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 1722
            K LL AY GRRK DNRDD RNK            LK+H+ HA + M K++QRDL  DR++
Sbjct: 400  KGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDV 459

Query: 1721 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 1542
            +PIEHYLDASIITNGL RAFSTGAWSHPYK+MER+SGVVA + RTNPLQ  A++R+ RQQ
Sbjct: 460  RPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQ 519

Query: 1541 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQ-QESLLQRFR 1365
            V YTG+VGDARYPHPSHWGK+CFL+TPDGENCGLVKNL+  GLVST +    ES+L +  
Sbjct: 520  VQYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLV 579

Query: 1364 ECGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDK 1185
            +CGM++L DD S+ L    K+ L+GDWVG+C DSSSFV++LR +RRR E+P+QVEIK+D+
Sbjct: 580  DCGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQ 639

Query: 1184 HHGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTA 1008
               EVRI+ DAGRILRPLLVV NL KIK  K D +SFQSLLD GVIE IGPEEEEDC TA
Sbjct: 640  SQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTA 699

Query: 1007 WGIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIG 828
            WG+++LF  E     V+YTHCELD SFLLGLSC L+PFANHDHARRVLYQS+KHS QAIG
Sbjct: 700  WGVEYLFGKE-GKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIG 758

Query: 827  YSTTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVA 648
            +STTNP+IR+DT SHQL+YPQ+PLFRT+ +DCLGK   S  Q  + P+ EF+NGQ AIVA
Sbjct: 759  FSTTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVA 818

Query: 647  VNVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQS 468
            VNVHLGYNQEDSLVMNRASL+RGMFR+EH+RSYK+E++N E+  KK+K +D+V+F K QS
Sbjct: 819  VNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQS 878

Query: 467  KIGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEG 288
            KIGRVDSL+DDGFPYVGANLQ+GDI+IGK A SG D+S+KLKHTERG VQKVVLSSNDEG
Sbjct: 879  KIGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEG 938

Query: 287  KNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSR 108
            KNFAVVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT+QGIVPDIVINPHAFPSR
Sbjct: 939  KNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSR 998

Query: 107  QTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            QTPGQ               LK ATPFSTPSV+ I
Sbjct: 999  QTPGQLLEAALGKGIACGGILKQATPFSTPSVDAI 1033


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1031

 Score = 1281 bits (3314), Expect = 0.0
 Identities = 631/994 (63%), Positives = 768/994 (77%), Gaps = 7/994 (0%)
 Frame = -3

Query: 2963 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 2784
            L E +LK FC+K++ +FF +YGLISHQINSYNDF+K+GIQ+ FD  G+I V+P +DPSKK
Sbjct: 43   LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK 102

Query: 2783 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 2604
            GDG+WRYA++KFGKVTL+ P F+ G          +   + PR+ARLQNMTYSSR+K+  
Sbjct: 103  GDGEWRYATVKFGKVTLDKPKFWGGAASG------KEYNMLPRHARLQNMTYSSRMKINI 156

Query: 2603 HLQVYTKGLSRSDKFKTGVENFVDKTVLNDY--HSDVIFGRLPVMVKSDLCWMNSSEKRD 2430
             L++YT+ L  SDKFKTG + +VDK  +     + DV  GRLPVMV SDLCWM   +KRD
Sbjct: 157  SLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRD 216

Query: 2429 CEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KV 2256
            CEFD+GGYF+IKGAEK FIAQEQ+CL RLW++    WTVAYR   KR R+ I+LV   K 
Sbjct: 217  CEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKS 276

Query: 2255 ENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNA 2076
            E++   +K+L VYF  TE P+W+LFFALGVS+D+E+V+LID   +D  + NIL AS+   
Sbjct: 277  EDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREV 336

Query: 2075 DK--KYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 1902
            D   K++ FR+   A+  +++ ++    PP + +E+C+  YLF +L   +QK   L YMV
Sbjct: 337  DNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMV 396

Query: 1901 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 1722
            KCLL+AY GRRK DNRDD RNK            LK+HI HA R M K++QRDL  DR++
Sbjct: 397  KCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV 456

Query: 1721 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 1542
             PIEHYLDASIITNGLSRAFSTGAW+H +K+MER+SGVVAT+ R NPLQ  A++R+TRQQ
Sbjct: 457  HPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQ 516

Query: 1541 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1362
            V+YTG+VGDARYPHPSHWG++CFLSTPDGENCGL+KNL+  GLVS     ++S+      
Sbjct: 517  VAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNT--KKSITPTLFR 574

Query: 1361 CGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1182
            CGME L D+ S+   GK++IFLDG+WVG+C+DS SFV+ +RRKRRR    +QVE+K+D+ 
Sbjct: 575  CGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQ 634

Query: 1181 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1005
              EVRIF DAGRILRPLLVV+NL +I   KG+ ++FQSLLD G+IE IG EEEEDC+ AW
Sbjct: 635  LKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAW 694

Query: 1004 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 825
             IKHL     D    +Y+HCELD SFLLGLSCGL+PFANHDHARR L+QS+KHS QAIG+
Sbjct: 695  SIKHLME---DEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGF 751

Query: 824  STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 645
            S TN + R+DT SHQL+YPQRPLFRT+ ADCLG          +LP+PEF+NGQ AIVAV
Sbjct: 752  SPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAV 811

Query: 644  NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 465
            NVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E+  K++K DD ++FGKTQSK
Sbjct: 812  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSK 871

Query: 464  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 285
            IGRVDSL+DDGFPY+GANLQ+GDIVIG+ A SG DHSIKLKHTE+GMVQKVVLSSND+GK
Sbjct: 872  IGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGK 931

Query: 284  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 105
            N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 932  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 991

Query: 104  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            TPGQ               LKYATPFSTPSV+ I
Sbjct: 992  TPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAI 1025


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1281 bits (3314), Expect = 0.0
 Identities = 631/994 (63%), Positives = 768/994 (77%), Gaps = 7/994 (0%)
 Frame = -3

Query: 2963 LDEGYLKMFCRKAATSFFEKYGLISHQINSYNDFVKHGIQQVFDSVGEITVEPSFDPSKK 2784
            L E +LK FC+K++ +FF +YGLISHQINSYNDF+K+GIQ+ FD  G+I V+P +DPSKK
Sbjct: 43   LGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKK 102

Query: 2783 GDGDWRYASLKFGKVTLEHPTFFAGEKFSSVDGFQEHLKLSPRYARLQNMTYSSRIKVET 2604
            GDG+WRYA++KFGKVTL+ P F+ G          +   + PR+ARLQNMTYSSR+K+  
Sbjct: 103  GDGEWRYATVKFGKVTLDKPKFWGGAASG------KEYNMLPRHARLQNMTYSSRMKINI 156

Query: 2603 HLQVYTKGLSRSDKFKTGVENFVDKTVLNDY--HSDVIFGRLPVMVKSDLCWMNSSEKRD 2430
             L++YT+ L  SDKFKTG + +VDK  +     + DV  GRLPVMV SDLCWM   +KRD
Sbjct: 157  SLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRD 216

Query: 2429 CEFDQGGYFVIKGAEKTFIAQEQMCLSRLWVTKTPTWTVAYRPVSKRKRVYIKLVP--KV 2256
            CEFD+GGYF+IKGAEK FIAQEQ+CL RLW++    WTVAYR   KR R+ I+LV   K 
Sbjct: 217  CEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKS 276

Query: 2255 ENIMGADKILTVYFYVTEFPIWVLFFALGVSNDREVVNLIDLDIEDSAIANILIASIYNA 2076
            E++   +K+L VYF  TE P+W+LFFALGVS+D+E+V+LID   +D  + NIL AS+   
Sbjct: 277  EDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREV 336

Query: 2075 DK--KYEGFRKEGNAVKHIEDLMKSVKSPPKESVEECIKNYLFPNLSSPRQKACLLAYMV 1902
            D   K++ FR+   A+  +++ ++    PP + +E+C+  YLF +L   +QK   L YMV
Sbjct: 337  DNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMV 396

Query: 1901 KCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKIHIKHAERLMVKSIQRDLDRDREL 1722
            KCLL+AY GRRK DNRDD RNK            LK+HI HA R M K++QRDL  DR++
Sbjct: 397  KCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQV 456

Query: 1721 QPIEHYLDASIITNGLSRAFSTGAWSHPYKKMERVSGVVATIRRTNPLQATADMRKTRQQ 1542
             PIEHYLDASIITNGLSRAFSTGAW+H +K+MER+SGVVAT+ R NPLQ  A++R+TRQQ
Sbjct: 457  HPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQ 516

Query: 1541 VSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTTILQQESLLQRFRE 1362
            V+YTG+VGDARYPHPSHWG++CFLSTPDGENCGL+KNL+  GLVS     ++S+      
Sbjct: 517  VAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNT--KKSITPTLFR 574

Query: 1361 CGMEKLDDDMSSLLDGKHKIFLDGDWVGICKDSSSFVSKLRRKRRRMEVPYQVEIKKDKH 1182
            CGME L D+ S+   GK++IFLDG+WVG+C+DS SFV+ +RRKRRR    +QVE+K+D+ 
Sbjct: 575  CGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQ 634

Query: 1181 HGEVRIFIDAGRILRPLLVVQNLKKIKDLKGD-FSFQSLLDSGVIEFIGPEEEEDCQTAW 1005
              EVRIF DAGRILRPLLVV+NL +I   KG+ ++FQSLLD G+IE IG EEEEDC+ AW
Sbjct: 635  LKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAW 694

Query: 1004 GIKHLFTAELDNPPVRYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGY 825
             IKHL     D    +Y+HCELD SFLLGLSCGL+PFANHDHARR L+QS+KHS QAIG+
Sbjct: 695  SIKHLME---DEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGF 751

Query: 824  STTNPSIRIDTNSHQLYYPQRPLFRTILADCLGKSKLSDHQKWMLPRPEFFNGQCAIVAV 645
            S TN + R+DT SHQL+YPQRPLFRT+ ADCLG          +LP+PEF+NGQ AIVAV
Sbjct: 752  SPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAV 811

Query: 644  NVHLGYNQEDSLVMNRASLERGMFRTEHVRSYKAEVENPEAPGKKQKIDDLVSFGKTQSK 465
            NVHLGYNQEDSLVMNRASLERGMFR+EH+RSYKAEV+N E+  K++K DD ++FGKTQSK
Sbjct: 812  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSK 871

Query: 464  IGRVDSLEDDGFPYVGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSSNDEGK 285
            IGRVDSL+DDGFPY+GANLQ+GDIVIG+ A SG DHSIKLKHTE+GMVQKVVLSSND+GK
Sbjct: 872  IGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGK 931

Query: 284  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQ 105
            N+AVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 932  NYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 991

Query: 104  TPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDI 3
            TPGQ               LKYATPFSTPSV+ I
Sbjct: 992  TPGQLLEAALGKGIAAGGSLKYATPFSTPSVDAI 1025