BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00014761
         (792 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Mor...   132   1e-28
ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III s...   119   9e-25
ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citr...   119   2e-24
ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III s...   118   2e-24
gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [The...   118   2e-24
ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III s...   116   8e-24
emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]   116   8e-24
ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Popu...   115   2e-23
gb|AFK37258.1| unknown [Lotus japonicus]                              112   1e-22
gb|AFK40316.1| unknown [Lotus japonicus]                              106   8e-21
gb|ESW35387.1| hypothetical protein PHAVU_001G230900g [Phaseolus...   103   9e-20
ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587...   100   4e-19
dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]        100   4e-19
ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidop...   100   4e-19
ref|XP_003552972.1| PREDICTED: DNA-directed RNA polymerase III s...   100   6e-19
gb|EMJ28495.1| hypothetical protein PRUPE_ppa017050mg [Prunus pe...    99   1e-18
ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258...    99   1e-18
ref|XP_006590267.1| PREDICTED: uncharacterized protein LOC100526...    99   2e-18
ref|NP_001238744.1| uncharacterized protein LOC100526847 [Glycin...    99   2e-18
ref|XP_002525535.1| conserved hypothetical protein [Ricinus comm...    99   2e-18

>gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Morus notabilis]
          Length = 163

 Score =  132 bits (333), Expect = 1e-28
 Identities = 56/95 (58%), Positives = 84/95 (88%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT V+A V+PSE+KV+DYL +TAAC+QTKE V++F+++CKKYDLAKAE+LN++N
Sbjct: 23  KGASKDPTRVLADVAPSEYKVYDYLVETAACDQTKENVNEFLEKCKKYDLAKAEVLNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETIAQIL 286
           +R S+AVE+Y I+E+C+ R+ + +DE V+T+A++L
Sbjct: 83  IRASTAVEIYLIVEDCEKRLGDDVDELVKTVAEVL 117


>ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis
           vinifera] gi|296087853|emb|CBI35109.3| unnamed protein
           product [Vitis vinifera]
          Length = 156

 Score =  119 bits (299), Expect = 9e-25
 Identities = 54/95 (56%), Positives = 77/95 (81%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           RGA KDPT VIA ++ SEFKV+DYL ++AACNQT+E +++ +++CKKYDLAKAEILN++N
Sbjct: 23  RGAAKDPTRVIAPIAASEFKVYDYLVESAACNQTRESINELLEKCKKYDLAKAEILNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETIAQIL 286
           +RP+S VE+  IIEE + RM E I++ +E +  +L
Sbjct: 83  IRPASPVEIDPIIEESEKRMGEGIEDLIEMVITVL 117


>ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citrus clementina]
           gi|567853814|ref|XP_006420027.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
           gi|557521899|gb|ESR33266.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
           gi|557521900|gb|ESR33267.1| hypothetical protein
           CICLE_v10006087mg [Citrus clementina]
          Length = 163

 Score =  119 bits (297), Expect = 2e-24
 Identities = 54/96 (56%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT V+  V+PSEFKV+DYL ++AACNQT+ I+++F+++ KK+ LAKAEILN++N
Sbjct: 23  KGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSR-MEEKIDEFVETIAQIL 286
           +RPSS VEV +IIE+CD+R  EE++ E V+ + ++L
Sbjct: 83  IRPSSLVEVDSIIEQCDTRFQEEELQELVDLVVEVL 118


>ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
           isoform X1 [Citrus sinensis]
           gi|568872598|ref|XP_006489454.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC9-like isoform X2 [Citrus
           sinensis]
          Length = 165

 Score =  118 bits (296), Expect = 2e-24
 Identities = 54/96 (56%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT V+  V+PSEFKV+DYL ++AACNQT+ I+++F+++ KK+ LAKAEILN++N
Sbjct: 23  KGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNIINEFLEKSKKFKLAKAEILNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSR-MEEKIDEFVETIAQIL 286
           +RPSS VEV +IIE+CD+R  EE++ E V+ + ++L
Sbjct: 83  IRPSSLVEVDSIIEQCDTRFQEEELQELVDLVIEVL 118


>gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [Theobroma cacao]
          Length = 245

 Score =  118 bits (296), Expect = 2e-24
 Identities = 54/114 (47%), Positives = 79/114 (69%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           RGA KDPT VI  ++PSEFKV+DYL ++AACNQTKE ++ F++ CK Y LAKAE+LN++N
Sbjct: 98  RGASKDPTRVIVPIAPSEFKVYDYLVESAACNQTKEHINDFLERCKNYKLAKAEVLNIIN 157

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETIAQILXXXXXXXXXXXXNAESKGE 343
           +RPS+ VE+  IIE+ + R  ++++E V  + ++L            N+E K E
Sbjct: 158 LRPSALVEIDPIIEQSEKRFGKQLEELVNLVVEVLPEPPTQKNAEQGNSEDKEE 211


>ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like
           [Cucumis sativus] gi|449523065|ref|XP_004168545.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           rpc9-like [Cucumis sativus]
          Length = 160

 Score =  116 bits (291), Expect = 8e-24
 Identities = 53/91 (58%), Positives = 72/91 (79%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT V+A V PSE+KVFDYL QT+ACNQT+E +  F ++ K+YDLAKAEILN++N
Sbjct: 23  KGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAIINFAEKSKEYDLAKAEILNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETI 274
           +RP++ VE++ +IE CD+RM E   E +E I
Sbjct: 83  LRPTTPVELFPVIENCDARMGEGATERMEEI 113


>emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]
          Length = 388

 Score =  116 bits (291), Expect = 8e-24
 Identities = 53/95 (55%), Positives = 76/95 (80%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           RGA KD T VIA ++ SEFKV+DYL ++AACNQT+E +++ +++CKKYDLAKAEILN++N
Sbjct: 44  RGAAKDXTRVIAPIAASEFKVYDYLVESAACNQTRESINELLEKCKKYDLAKAEILNIIN 103

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETIAQIL 286
           +RP+S VE+  IIEE + RM E I++ +E +  +L
Sbjct: 104 IRPASPVEIDPIIEESEKRMGEGIEDLIEMVITVL 138


>ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Populus trichocarpa]
           gi|222855719|gb|EEE93266.1| hypothetical protein
           POPTR_0005s06860g [Populus trichocarpa]
          Length = 159

 Score =  115 bits (288), Expect = 2e-23
 Identities = 54/96 (56%), Positives = 76/96 (79%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           RGA +D + V+A V+ SE+KV+DYL +T ACN T+E +++F++ CKKYDLAKAE+LN++N
Sbjct: 23  RGASRDVSRVLAPVAASEYKVYDYLVETPACNLTREKINEFLERCKKYDLAKAELLNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSRMEEK-IDEFVETIAQIL 286
           +RPS  VE+YTIIEE DSR E   I+E VE + ++L
Sbjct: 83  IRPSQTVEIYTIIEEMDSRFEMPIIEELVELVEEVL 118


>gb|AFK37258.1| unknown [Lotus japonicus]
          Length = 162

 Score =  112 bits (280), Expect = 1e-22
 Identities = 53/96 (55%), Positives = 77/96 (80%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT VIA V+ SE+KV+DYL  TAA NQT+E +++F+   KK+DLAKAE+LN++N
Sbjct: 23  KGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEFMASVKKHDLAKAEVLNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSRM-EEKIDEFVETIAQIL 286
           +RP++AVE++ IIEEC+SR  +E++ E VE + + L
Sbjct: 83  IRPAAAVEMFPIIEECESRFPDEEVTEIVELVKKTL 118


>gb|AFK40316.1| unknown [Lotus japonicus]
          Length = 162

 Score =  106 bits (265), Expect = 8e-21
 Identities = 51/96 (53%), Positives = 74/96 (77%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT VIA V+ SE+KV+DYL  TAA NQT+E +++F+   KK+DLAKAE+LN++N
Sbjct: 23  KGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINEFMASVKKHDLAKAEVLNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSRM-EEKIDEFVETIAQIL 286
           + P++AVE++ IIEEC+ R  +E++ E VE   + L
Sbjct: 83  ITPAAAVEMFPIIEECEPRFPDEEVTEIVELAKKTL 118


>gb|ESW35387.1| hypothetical protein PHAVU_001G230900g [Phaseolus vulgaris]
          Length = 154

 Score =  103 bits (256), Expect = 9e-20
 Identities = 49/96 (51%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT VIA V  SE+KV+DYL  TAA +QT+E +++F+   K++DLAKAE+LN++N
Sbjct: 23  KGASKDPTRVIAKVEQSEYKVYDYLVDTAASDQTRESINEFLTCIKRHDLAKAEVLNILN 82

Query: 182 MRPSSAVEVYTIIEECDSRM-EEKIDEFVETIAQIL 286
            RP+S VE++ IIE C+ R  +E++ E VE + + L
Sbjct: 83  TRPTSEVEIFPIIESCEGRFPDEEVTEIVELVTKTL 118


>ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587541 isoform X1 [Solanum
           tuberosum] gi|565389533|ref|XP_006360507.1| PREDICTED:
           uncharacterized protein LOC102587541 isoform X2 [Solanum
           tuberosum]
          Length = 173

 Score =  100 bits (250), Expect = 4e-19
 Identities = 50/114 (43%), Positives = 74/114 (64%), Gaps = 19/114 (16%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAK-------- 157
           RGAG+DPT VI  ++PSEFKV+DYLEQTAACNQT++++ + + +CK   L K        
Sbjct: 23  RGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVIGELMGKCKSIKLEKCKCIKPEK 82

Query: 158 --------AEILNVVNMRPSSAVEVYTIIEECDSRME---EKIDEFVETIAQIL 286
                    E +N++N+RPSS VE+Y I+ + D+ +E   E ++E VE + Q+L
Sbjct: 83  CKCIKLKHVETVNIINIRPSSLVELYPILRKYDAHLEEVAETMEELVENVVQLL 136


>dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]
          Length = 166

 Score =  100 bits (250), Expect = 4e-19
 Identities = 51/95 (53%), Positives = 68/95 (71%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           RGA KD T VIA ++ SE+KV+DYL +TAA  QT+E ++KF D+CK + LAKAEILN++N
Sbjct: 50  RGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNIIN 109

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETIAQIL 286
           +RPSS VE+  IIE  D R E   D  +E +  +L
Sbjct: 110 LRPSSIVELLPIIENLDDR-EIDTDGILELVKDLL 143


>ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
           gi|334188590|ref|NP_001190602.1| RNA polymerase II,
           Rpb4, core protein [Arabidopsis thaliana]
           gi|32815911|gb|AAP88340.1| At5g62950 [Arabidopsis
           thaliana] gi|110743157|dbj|BAE99470.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332010294|gb|AED97677.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
           gi|332010296|gb|AED97679.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
          Length = 139

 Score =  100 bits (250), Expect = 4e-19
 Identities = 51/95 (53%), Positives = 68/95 (71%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           RGA KD T VIA ++ SE+KV+DYL +TAA  QT+E ++KF D+CK + LAKAEILN++N
Sbjct: 23  RGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETIAQIL 286
           +RPSS VE+  IIE  D R E   D  +E +  +L
Sbjct: 83  LRPSSIVELLPIIENLDDR-EIDTDGILELVKDLL 116


>ref|XP_003552972.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like
           [Glycine max]
          Length = 161

 Score =  100 bits (249), Expect = 6e-19
 Identities = 49/96 (51%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT VIA V+ SE+KV+DYL  TAA  QT+E +++F+   K++DLAKAE+LN++N
Sbjct: 23  KGASKDPTRVIAKVAQSEYKVYDYLVDTAASVQTRESINEFLTSVKQHDLAKAEVLNILN 82

Query: 182 MRPSSAVEVYTIIEECDSRM-EEKIDEFVETIAQIL 286
           + P++ VE+Y IIE+CD R  +E + E VE + + L
Sbjct: 83  IGPAAEVELYPIIEDCDERFGDEGVLEIVELVKKTL 118


>gb|EMJ28495.1| hypothetical protein PRUPE_ppa017050mg [Prunus persica]
          Length = 160

 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 45/94 (47%), Positives = 67/94 (71%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           RGA +D   V + V+PSE KV+ YL  T A  QT E +++F ++CKKYDLA+AE+LN++N
Sbjct: 22  RGASEDSARVFSDVTPSENKVYGYLFGTPARGQTTENINEFKEKCKKYDLAEAEVLNIIN 81

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETIAQI 283
            RPSS V +Y +IE CD R+ + ++E VE + ++
Sbjct: 82  TRPSSIVGIYPLIENCDLRLGDTVEELVELVVEV 115


>ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258513 [Solanum
           lycopersicum]
          Length = 168

 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 50/114 (43%), Positives = 74/114 (64%), Gaps = 19/114 (16%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKA------- 160
           RGAG+DPT VI  ++PSEFKV+DYLEQTAACNQT++++ + + +CK   L K        
Sbjct: 23  RGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVIGELMGKCKCIKLEKCECIKPKQ 82

Query: 161 ---------EILNVVNMRPSSAVEVYTIIEECDSRM---EEKIDEFVETIAQIL 286
                    EI+N++N+RPSS VE+Y I+ + D+ +    E ++E VE + Q+L
Sbjct: 83  CECIKLEGDEIVNIINIRPSSLVELYPILRKYDALLGEAAETVEELVENVVQLL 136


>ref|XP_006590267.1| PREDICTED: uncharacterized protein LOC100526847 isoform X1 [Glycine
           max]
          Length = 161

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 49/96 (51%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT VIA VS SE+KV+DYL  TAA  QT+E +++F+   K++DLAKAE+LN++N
Sbjct: 23  KGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESINEFLRSVKQHDLAKAEVLNILN 82

Query: 182 MRPSSAVEVYTIIEECDSRM-EEKIDEFVETIAQIL 286
           + P++ VE+Y I+EE D R  +E + E VE + + L
Sbjct: 83  IGPAAEVELYPILEESDERFGDEGVTEIVELVKKTL 118


>ref|NP_001238744.1| uncharacterized protein LOC100526847 [Glycine max]
           gi|255630978|gb|ACU15853.1| unknown [Glycine max]
          Length = 161

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 49/96 (51%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           +GA KDPT VIA VS SE+KV+DYL  TAA  QT+E +++F+   K++DLAKAE+LN++N
Sbjct: 23  KGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESINEFLRSVKQHDLAKAEVLNILN 82

Query: 182 MRPSSAVEVYTIIEECDSRM-EEKIDEFVETIAQIL 286
           + P++ VE+Y I+EE D R  +E + E VE + + L
Sbjct: 83  IGPAAEVELYPILEESDERFGDEGVTEIVELVKKAL 118


>ref|XP_002525535.1| conserved hypothetical protein [Ricinus communis]
           gi|223535214|gb|EEF36893.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 138

 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 46/94 (48%), Positives = 69/94 (73%)
 Frame = +2

Query: 2   RGAGKDPTCVIASVSPSEFKVFDYLEQTAACNQTKEIVHKFVDECKKYDLAKAEILNVVN 181
           RGAGKD + VIA V+PSE+KV+DYL +T AC QT+E +++F+++CK Y LAKAEILN++N
Sbjct: 23  RGAGKDSSRVIAPVAPSEYKVYDYLMETPACRQTREQINEFMEKCKAYKLAKAEILNIIN 82

Query: 182 MRPSSAVEVYTIIEECDSRMEEKIDEFVETIAQI 283
           + P   VE+  IIE+ + R  + ++E  + +  I
Sbjct: 83  IVPRELVELDPIIEKSEVRFGDLLEEVKDLVCDI 116