BLASTX nr result
ID: Rehmannia26_contig00014645
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00014645
(1169 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 239 2e-60
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 239 2e-60
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 237 6e-60
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 237 6e-60
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu... 236 2e-59
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no... 225 3e-56
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub... 224 5e-56
gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus pe... 223 9e-56
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr... 223 2e-55
gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative... 210 1e-51
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus... 207 5e-51
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac... 206 1e-50
ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E sub... 203 1e-49
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub... 198 4e-48
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub... 196 2e-47
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi... 194 4e-47
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th... 193 1e-46
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian... 193 1e-46
gb|AAB95289.1| unknown protein [Arabidopsis thaliana] 193 1e-46
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub... 192 2e-46
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 239 bits (609), Expect = 2e-60
Identities = 113/202 (55%), Positives = 147/202 (72%), Gaps = 7/202 (3%)
Frame = +1
Query: 4 RSRESSQGRGPSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLS 162
+ + S+G G N EWKN++ RP NDD N L+T + QRLD FT+EEQD+L+
Sbjct: 1755 KKNQGSKGWG-GNAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILA 1813
Query: 163 ETEAIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHG 342
+ E IM++IR++MHQ+GYNDGDPL +DQ++++ +V N+HPDKAAKMGAGIDH MV+RH
Sbjct: 1814 DIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHS 1873
Query: 343 EFQDSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRG 522
FQ+SRCFY V+ DG K DFSYRKCL+NF++GKYPD+AE F+ KYF+KP+P NRDR
Sbjct: 1874 SFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNR--NRDRN 1931
Query: 523 PARGEAGTPSSWNRDSTPAPEE 588
PA E S + TP PEE
Sbjct: 1932 PA-SEENENKSIGGELTPIPEE 1952
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 239 bits (609), Expect = 2e-60
Identities = 113/202 (55%), Positives = 147/202 (72%), Gaps = 7/202 (3%)
Frame = +1
Query: 4 RSRESSQGRGPSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLS 162
+ + S+G G N EWKN++ RP NDD N L+T + QRLD FT+EEQD+L+
Sbjct: 1815 KKNQGSKGWG-GNAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQDILA 1873
Query: 163 ETEAIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHG 342
+ E IM++IR++MHQ+GYNDGDPL +DQ++++ +V N+HPDKAAKMGAGIDH MV+RH
Sbjct: 1874 DIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHS 1933
Query: 343 EFQDSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRG 522
FQ+SRCFY V+ DG K DFSYRKCL+NF++GKYPD+AE F+ KYF+KP+P NRDR
Sbjct: 1934 SFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNR--NRDRN 1991
Query: 523 PARGEAGTPSSWNRDSTPAPEE 588
PA E S + TP PEE
Sbjct: 1992 PA-SEENENKSIGGELTPIPEE 2012
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 237 bits (605), Expect = 6e-60
Identities = 119/199 (59%), Positives = 145/199 (72%), Gaps = 7/199 (3%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRPN-------DDPNALGLFTVTRQRLDSFTAEEQDVLSETE 171
E S+G G SN+ EWKNK+ RPN DD +A G+FT TRQR+D FT+EEQD+L + E
Sbjct: 1693 EGSRGWG-SNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVE 1751
Query: 172 AIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQ 351
IM++IRRIMHQ GYNDGDPL DDQ+YI+D V N HPDKA KMG GID++MV+RH F
Sbjct: 1752 PIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFL 1811
Query: 352 DSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPAR 531
+SRCFY VS DG K DFSYRKCLENF++ KYPD AETFI KYF++ PR+G NR+R
Sbjct: 1812 ESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIP 1869
Query: 532 GEAGTPSSWNRDSTPAPEE 588
+ G NR+ + PEE
Sbjct: 1870 EDGG-----NREQSVVPEE 1883
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 237 bits (605), Expect = 6e-60
Identities = 119/199 (59%), Positives = 145/199 (72%), Gaps = 7/199 (3%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRPN-------DDPNALGLFTVTRQRLDSFTAEEQDVLSETE 171
E S+G G SN+ EWKNK+ RPN DD +A G+FT TRQR+D FT+EEQD+L + E
Sbjct: 1633 EGSRGWG-SNNTEWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQDILLDVE 1691
Query: 172 AIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQ 351
IM++IRRIMHQ GYNDGDPL DDQ+YI+D V N HPDKA KMG GID++MV+RH F
Sbjct: 1692 PIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSRHSSFL 1751
Query: 352 DSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPAR 531
+SRCFY VS DG K DFSYRKCLENF++ KYPD AETFI KYF++ PR+G NR+R
Sbjct: 1752 ESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRR--PRAGGNRERSVIP 1809
Query: 532 GEAGTPSSWNRDSTPAPEE 588
+ G NR+ + PEE
Sbjct: 1810 EDGG-----NREQSVVPEE 1823
>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
gi|550343552|gb|EEE78905.2| hypothetical protein
POPTR_0003s19630g [Populus trichocarpa]
Length = 1920
Score = 236 bits (601), Expect = 2e-59
Identities = 115/175 (65%), Positives = 138/175 (78%), Gaps = 3/175 (1%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRPN---DDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 183
E S+G G SN+ +WKNKR RP+ +D NA G+FT TRQRLD FT++EQD+LS+ E +M
Sbjct: 1741 EGSRGWG-SNNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQDILSDIEPLML 1799
Query: 184 NIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 363
+IRRIMHQTGYNDGDPL DDQ+Y++DNV +YHPDKA KMGAGIDH+ V+RH FQ+SRC
Sbjct: 1800 SIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDHVTVSRHSNFQESRC 1859
Query: 364 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPA 528
FY VS DG K DFSYRKCLENF++GKYPD+A+ FI KYF R G NR R PA
Sbjct: 1860 FYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYF----ARRG-NRQRTPA 1909
>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
Length = 2054
Score = 225 bits (573), Expect = 3e-56
Identities = 112/198 (56%), Positives = 141/198 (71%), Gaps = 7/198 (3%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRP------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEA 174
E+S G G S+ +WK K+ P N+D ++ LFT TRQRLD FT+EEQD LS E
Sbjct: 1848 ETSGGWG-SDSGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIEP 1906
Query: 175 IMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQD 354
MK+IRRIMH++GYNDGDP+ +DQ++IIDNV NYHPDKAAKMG+GIDH+M++RH FQD
Sbjct: 1907 TMKSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQD 1966
Query: 355 SRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARG 534
SRC Y VS DG K DFSYRKCL N ++ ++PDVA+ F+ KYF+KP+P G N+DR
Sbjct: 1967 SRCLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKP--GGNQDR----- 2019
Query: 535 EAGTPS-SWNRDSTPAPE 585
TP +WN P PE
Sbjct: 2020 -ISTPEPAWNNTQAPTPE 2036
>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
sinensis]
Length = 1865
Score = 224 bits (571), Expect = 5e-56
Identities = 109/182 (59%), Positives = 135/182 (74%), Gaps = 10/182 (5%)
Frame = +1
Query: 1 GRSRES--SQGRG-PSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQ 150
G+SR+ + RG S+ EWK K+ RP NDD ++TVTRQRLD FT+EEQ
Sbjct: 1671 GQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQ 1730
Query: 151 DVLSETEAIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMV 330
D+LS E IM++IRRIMHQ+GYNDGD L DD+++I DNV NYHPDKA KMGAGIDH V
Sbjct: 1731 DILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKV 1790
Query: 331 NRHGEFQDSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWN 510
++HG FQDSRC + VS DG + DFSYRKCLE+F+RGKYPD+ + FI KYF++ PRSG N
Sbjct: 1791 DKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGKYFRR--PRSGGN 1848
Query: 511 RD 516
R+
Sbjct: 1849 RE 1850
>gb|EMJ20080.1| hypothetical protein PRUPE_ppa000088mg [Prunus persica]
Length = 1855
Score = 223 bits (569), Expect = 9e-56
Identities = 113/190 (59%), Positives = 136/190 (71%), Gaps = 6/190 (3%)
Frame = +1
Query: 37 SNDAEWKNKRTRP------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIRRI 198
S+ EWKNK P ND+ L+TVTRQRLD FT+EEQDVLS E +M+++RRI
Sbjct: 1669 SSPGEWKNKNRPPKSPGMVNDNSTMGALYTVTRQRLDMFTSEEQDVLSNIEPVMRSLRRI 1728
Query: 199 MHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYAVS 378
MHQ+GYNDGDPL DDQ++++DNV NYHPDKAAKMG GIDH+ VNRHG FQDSRCF+ VS
Sbjct: 1729 MHQSGYNDGDPLSGDDQSFVLDNVFNYHPDKAAKMGCGIDHLTVNRHGSFQDSRCFFVVS 1788
Query: 379 VDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPSSW 558
DG DFSYRKCL+N++R K+PD+AETFI KYF R G NR+R P + T S
Sbjct: 1789 TDGRTEDFSYRKCLDNYIREKFPDLAETFIGKYFS----RRG-NRERNPTLIQTPTLS-- 1841
Query: 559 NRDSTPAPEE 588
+ STP E
Sbjct: 1842 -QTSTPEQTE 1850
>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
gi|557522591|gb|ESR33958.1| hypothetical protein
CICLE_v10004129mg [Citrus clementina]
Length = 1867
Score = 223 bits (567), Expect = 2e-55
Identities = 108/182 (59%), Positives = 135/182 (74%), Gaps = 10/182 (5%)
Frame = +1
Query: 1 GRSRES--SQGRG-PSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQ 150
G+SR+ + RG S+ EWK K+ RP NDD ++TVTRQRLD FT+EEQ
Sbjct: 1673 GQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPGVVNDDSTVNAMYTVTRQRLDMFTSEEQ 1732
Query: 151 DVLSETEAIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMV 330
D+LS+ E IM++IRRIMHQ+GYNDGD L DD+++I DNV NYHPDKA KMGAGIDH V
Sbjct: 1733 DILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKAMKMGAGIDHFKV 1792
Query: 331 NRHGEFQDSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWN 510
++HG FQDSRC + VS DG + DFSYRKCLE+F+RGKYP+ + FI KYF++ PRSG N
Sbjct: 1793 DKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPEFVDEFIGKYFRR--PRSGGN 1850
Query: 511 RD 516
R+
Sbjct: 1851 RE 1852
>gb|EOY19809.1| DNA-directed RNA polymerase E subunit 1, putative isoform 1
[Theobroma cacao] gi|508727913|gb|EOY19810.1|
DNA-directed RNA polymerase E subunit 1, putative isoform
1 [Theobroma cacao]
Length = 1788
Score = 210 bits (534), Expect = 1e-51
Identities = 99/182 (54%), Positives = 131/182 (71%), Gaps = 7/182 (3%)
Frame = +1
Query: 4 RSRESSQGRGPSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLS 162
+ + Q RG A +K+ P NDD + ++T TRQRLD FT+EEQD+LS
Sbjct: 1599 KQHQWGQSRGSRRWASDASKKNHPVKSARVMNDDSSMAAMYTATRQRLDMFTSEEQDILS 1658
Query: 163 ETEAIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHG 342
+ E +M++IR+IMHQ+GYNDGDPL DQ++I++NV +HPDKA KMGAG+D++MV++H
Sbjct: 1659 DVEPLMQSIRKIMHQSGYNDGDPLSALDQSFILENVFTHHPDKAIKMGAGVDYVMVSKHS 1718
Query: 343 EFQDSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRG 522
F DSRCFY VS DG K DFSYRKCL+NF++GKYPD+A+ FI KYF+K PR G R+R
Sbjct: 1719 NFPDSRCFYVVSTDGRKQDFSYRKCLDNFIKGKYPDMADVFIAKYFRK--PRFGGFRERS 1776
Query: 523 PA 528
A
Sbjct: 1777 VA 1778
>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
Length = 2052
Score = 207 bits (528), Expect = 5e-51
Identities = 109/198 (55%), Positives = 136/198 (68%), Gaps = 6/198 (3%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIR 192
E SQGRG SN +WKN R RP P QRLD +++EEQDVL E E IM++IR
Sbjct: 1865 EGSQGRG-SNSGDWKN-RNRPPRTPG---------QRLDLYSSEEQDVLKEIEPIMQSIR 1913
Query: 193 RIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYA 372
RIM Q GYNDGDPL DDQ ++++NV +HPDK KMGAGID++MVN+H FQDSRCFY
Sbjct: 1914 RIMQQQGYNDGDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYV 1973
Query: 373 VSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWN-RDRG-----PARG 534
V DG + DFSYRKCL+N++R KYP++AE+F KYF+KP+ R+ RG P R
Sbjct: 1974 VLKDGRREDFSYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQTATPRGDQTAMPPRD 2033
Query: 535 EAGTPSSWNRDSTPAPEE 588
EA TP+ ++ STP P E
Sbjct: 2034 EAATPA--DQTSTPGPVE 2049
>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 206 bits (525), Expect = 1e-50
Identities = 104/205 (50%), Positives = 134/205 (65%), Gaps = 17/205 (8%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTR--------------PNDDPNALGLFTVTRQRLDSFTAEEQ 150
E +G G SN EWK+++ + PNDD + L T TR+R+D F EE+
Sbjct: 1697 EGGRGWGSSNTGEWKSRKNQNQNQNQNQNRPPRGPNDDSPRVAL-TATRKRMDEFPTEEK 1755
Query: 151 DVLSETEAIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMV 330
DVLSE E++M++IRRIMHQ+G DG+PL DDQTY+IDN++NYHPDKAAK+GAG+D I V
Sbjct: 1756 DVLSEVESLMQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNYHPDKAAKIGAGVDFITV 1815
Query: 331 NRHGEFQDSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFK---KPQPRS 501
+H FQ+SRCFY VS DG TDFSY KC+E F++GKYP VAE+F KYF+ +PQP S
Sbjct: 1816 KKHSNFQESRCFYVVSTDGKDTDFSYIKCIETFVKGKYPSVAESFTSKYFRRSQRPQPAS 1875
Query: 502 GWNRDRGPARGEAGTPSSWNRDSTP 576
P +PS + TP
Sbjct: 1876 PSPASPSPTSPSPASPSPAPPNPTP 1900
>ref|XP_004308588.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1991
Score = 203 bits (516), Expect = 1e-49
Identities = 94/170 (55%), Positives = 122/170 (71%), Gaps = 7/170 (4%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRP-------NDDPNALGLFTVTRQRLDSFTAEEQDVLSETE 171
E + GP N EWK K +RP NDD + ++T TRQRLD FT+EEQDVLS E
Sbjct: 1807 EGGRSWGP-NAGEWKGKNSRPAKSPGMVNDDSSVAAIYTATRQRLDIFTSEEQDVLSHIE 1865
Query: 172 AIMKNIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQ 351
M +IRRIMHQ+GYNDGD L +D ++I+D V N+HP+K AKMG+GID+ V+RHG FQ
Sbjct: 1866 PTMLSIRRIMHQSGYNDGDQLSAEDHSFILDKVFNFHPEKEAKMGSGIDYFTVDRHGSFQ 1925
Query: 352 DSRCFYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRS 501
+SRC + +S DG K DFSYRKCL+N ++ KYP++AE F KYF +P+PR+
Sbjct: 1926 ESRCLFVISTDGRKEDFSYRKCLQNMIKEKYPELAEAFNDKYFSRPRPRN 1975
>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2082
Score = 198 bits (503), Expect = 4e-48
Identities = 102/192 (53%), Positives = 131/192 (68%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIR 192
E SQGRG SN +WKN R RP P A G QRLD +++ EQDVL + E IM++IR
Sbjct: 1888 EGSQGRG-SNAGDWKN-RNRP---PRAPG------QRLDIYSSGEQDVLKDIEPIMQSIR 1936
Query: 193 RIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYA 372
RIM Q GYNDGDPL +DQ ++++NV +HPDK KMG GID++MVN+H FQ+SRCFY
Sbjct: 1937 RIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMVNKHSSFQESRCFYV 1996
Query: 373 VSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAGTPS 552
V DG DFSYRKCL N++ KYPD+AE+F+ KYF+KP+ R ++ P R EA TP
Sbjct: 1997 VCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRARG--DQTATPGRDEAATPG 2054
Query: 553 SWNRDSTPAPEE 588
+ +TP +E
Sbjct: 2055 --EQTATPGRDE 2064
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
Length = 2020
Score = 196 bits (497), Expect = 2e-47
Identities = 100/184 (54%), Positives = 128/184 (69%), Gaps = 6/184 (3%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIR 192
E SQGRG SN +WKN R RP P A G QRLD +++EEQDVL + E IM++IR
Sbjct: 1845 EGSQGRG-SNAGDWKN-RNRP---PRAPG------QRLDIYSSEEQDVLKDIEPIMQSIR 1893
Query: 193 RIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYA 372
RIM Q GY+DGDPL +DQ ++++NV +HPDK KMGAGID++MVN+H FQ+SRCFY
Sbjct: 1894 RIMQQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSFQESRCFYV 1953
Query: 373 VSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRS------GWNRDRGPARG 534
V DG DFSYRKCL N++ KYPD+AE+F+ KYF+KP+ R G ++ PA+
Sbjct: 1954 VCKDGQSKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRARGDQTATLGGDQTATPAQD 2013
Query: 535 EAGT 546
EA T
Sbjct: 2014 EAAT 2017
>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 194 bits (494), Expect = 4e-47
Identities = 95/195 (48%), Positives = 126/195 (64%), Gaps = 4/195 (2%)
Frame = +1
Query: 16 SSQGRGPSNDAEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 183
SS G A+WK KR P + N +FT TRQRLDSFT+EEQ++LS+ E +M+
Sbjct: 1689 SSGGWSNGGGADWKGKRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMR 1748
Query: 184 NIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 363
+R+IMH + Y DGDP+ DD+T++++ ++N+HP K K+G+G+D I V++H F DSRC
Sbjct: 1749 TLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRC 1808
Query: 364 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAG 543
F+ VS DG K DFSYRK L N+L KYPD AE FI KYF KP+P NRDR
Sbjct: 1809 FFVVSTDGAKQDFSYRKSLNNYLMMKYPDRAEEFIDKYFTKPRPSG--NRDRN------- 1859
Query: 544 TPSSWNRDSTPAPEE 588
N+D+TP EE
Sbjct: 1860 -----NQDATPPGEE 1869
>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 193 bits (490), Expect = 1e-46
Identities = 94/195 (48%), Positives = 125/195 (64%), Gaps = 4/195 (2%)
Frame = +1
Query: 16 SSQGRGPSNDAEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 183
SS G A+WK R P + N +FT TRQRLDSFT+EEQ++LS+ E +M+
Sbjct: 1689 SSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMR 1748
Query: 184 NIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 363
+R+IMH + Y DGDP+ DD+T++++ ++N+HP K K+G+G+D I V++H F DSRC
Sbjct: 1749 TLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRC 1808
Query: 364 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAG 543
F+ VS DG K DFSYRK L N+L KYPD AE FI KYF KP+P NRDR
Sbjct: 1809 FFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------- 1859
Query: 544 TPSSWNRDSTPAPEE 588
N+D+TP EE
Sbjct: 1860 -----NQDATPPGEE 1869
>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
Full=DNA-directed RNA polymerase V subunit 1; AltName:
Full=DNA-directed RNA polymerase D subunit 1b;
Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
AltName: Full=DNA-directed RNA polymerase E subunit 1;
Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
[Arabidopsis thaliana]
Length = 1976
Score = 193 bits (490), Expect = 1e-46
Identities = 94/195 (48%), Positives = 125/195 (64%), Gaps = 4/195 (2%)
Frame = +1
Query: 16 SSQGRGPSNDAEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 183
SS G A+WK R P + N +FT TRQRLDSFT+EEQ++LS+ E +M+
Sbjct: 1689 SSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMR 1748
Query: 184 NIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 363
+R+IMH + Y DGDP+ DD+T++++ ++N+HP K K+G+G+D I V++H F DSRC
Sbjct: 1749 TLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRC 1808
Query: 364 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAG 543
F+ VS DG K DFSYRK L N+L KYPD AE FI KYF KP+P NRDR
Sbjct: 1809 FFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------- 1859
Query: 544 TPSSWNRDSTPAPEE 588
N+D+TP EE
Sbjct: 1860 -----NQDATPPGEE 1869
>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
Length = 839
Score = 193 bits (490), Expect = 1e-46
Identities = 94/195 (48%), Positives = 125/195 (64%), Gaps = 4/195 (2%)
Frame = +1
Query: 16 SSQGRGPSNDAEWKNKRTR----PNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMK 183
SS G A+WK R P + N +FT TRQRLDSFT+EEQ++LS+ E +M+
Sbjct: 552 SSGGWSNGGGADWKGNRNHTPRPPRSEDNLAPMFTATRQRLDSFTSEEQELLSDVEPVMR 611
Query: 184 NIRRIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRC 363
+R+IMH + Y DGDP+ DD+T++++ ++N+HP K K+G+G+D I V++H F DSRC
Sbjct: 612 TLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKHTIFSDSRC 671
Query: 364 FYAVSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPRSGWNRDRGPARGEAG 543
F+ VS DG K DFSYRK L N+L KYPD AE FI KYF KP+P NRDR
Sbjct: 672 FFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPRPSG--NRDRN------- 722
Query: 544 TPSSWNRDSTPAPEE 588
N+D+TP EE
Sbjct: 723 -----NQDATPPGEE 732
>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
arietinum]
Length = 2263
Score = 192 bits (488), Expect = 2e-46
Identities = 98/204 (48%), Positives = 127/204 (62%), Gaps = 14/204 (6%)
Frame = +1
Query: 13 ESSQGRGPSNDAEWKNKRTRPNDDPNALGLFTVTRQRLDSFTAEEQDVLSETEAIMKNIR 192
+ SQG G SN +WKNK RP P RLD +++EEQD+L + E I+++IR
Sbjct: 2046 QGSQGWG-SNAGDWKNKN-RPARPPGP---------RLDLYSSEEQDILKDIEPIVQSIR 2094
Query: 193 RIMHQTGYNDGDPLPTDDQTYIIDNVINYHPDKAAKMGAGIDHIMVNRHGEFQDSRCFYA 372
RIM Q GYNDGDPL +DQ Y+++NV +HPDK KMG GIDH+MV+RH FQ+SRCFY
Sbjct: 2095 RIMQQQGYNDGDPLAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYV 2154
Query: 373 VSVDGGKTDFSYRKCLENFLRGKYPDVAETFIPKYFKKPQPR--------------SGWN 510
V DG K DFSYRKCLE+F+R KY D AE+F KYF+KP+P+ G
Sbjct: 2155 VLKDGKKEDFSYRKCLESFVRKKYADTAESFCGKYFRKPRPKRDQIANSGGEQTANPGGE 2214
Query: 511 RDRGPARGEAGTPSSWNRDSTPAP 582
+ P + TP+ + +TP P
Sbjct: 2215 QTATPGGEQTTTPNGGEQTATPTP 2238