BLASTX nr result
ID: Rehmannia26_contig00009137
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00009137
(1465 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 531 e-148
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 526 e-146
gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlise... 506 e-141
gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 489 e-135
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 486 e-134
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 485 e-134
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 485 e-134
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 481 e-133
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 478 e-132
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 470 e-130
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 459 e-126
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A... 451 e-124
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 448 e-123
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 448 e-123
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s... 443 e-122
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 441 e-121
ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi... 441 e-121
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 440 e-121
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s... 438 e-120
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 436 e-119
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Solanum tuberosum]
Length = 1394
Score = 531 bits (1368), Expect = e-148
Identities = 282/400 (70%), Positives = 324/400 (81%), Gaps = 3/400 (0%)
Frame = +1
Query: 1 QHSEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGT 180
Q+ +DR LE +A NISGIT++QL VFL TCISRYH K+ EPGT
Sbjct: 990 QYEGDDRGYLEKIALNISGITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGT 1049
Query: 181 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIE 360
QMTLKTFHFAGVASMNVTLGVPRIKEIINAAK+I TPIITT L N A+++K RIE
Sbjct: 1050 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIE 1109
Query: 361 KTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQV 540
KTLL QVAKS+K ASRLASI I+LDM+ IQ +QL +DAYTVK+SILQT K+KLKE Q+
Sbjct: 1110 KTLLGQVAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQI 1169
Query: 541 RVLNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKR 720
+VLNPRKLEV QA+++KL FELH LKNK+ VVVKGI +V+RA++ N+ ++KD + +
Sbjct: 1170 KVLNPRKLEVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVV-NKEQQKDRKNDVK 1228
Query: 721 ---LKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHG 891
+LLVEGTGLL+VMGI+GVDG T SNHI+EVQ TLGIEAAR IIDEI YTMSSHG
Sbjct: 1229 GETYELLVEGTGLLAVMGIEGVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHG 1288
Query: 892 MTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDR 1071
MTID+RHMMLLADLMT+KGEVLGITRHGVQKMKDSVLMLASFEKT DHLFNASVNGR D+
Sbjct: 1289 MTIDLRHMMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDK 1348
Query: 1072 IEGVSECIIMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 1191
IEGV+ECIIMGIPM IGTGM K+RQ V+ VELNY PDPII
Sbjct: 1349 IEGVTECIIMGIPMTIGTGMFKLRQRVEQVELNYQPDPII 1388
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
lycopersicum]
Length = 1390
Score = 526 bits (1354), Expect = e-146
Identities = 278/400 (69%), Positives = 322/400 (80%), Gaps = 3/400 (0%)
Frame = +1
Query: 1 QHSEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGT 180
Q+ +DR LE + NISGIT++QL VFL TCISRYH K+ EPGT
Sbjct: 990 QYEGDDRGYLEKIVLNISGITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGT 1049
Query: 181 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIE 360
QMTLKTFHFAGVASMNVTLGVPRIKEIINAAK+I TPIIT L N A+++K RIE
Sbjct: 1050 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIE 1109
Query: 361 KTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQV 540
KTLL QVAKS+K ASRLASI I+LDM+ IQ +QL +DAYTVK+SILQT K+KLKE Q+
Sbjct: 1110 KTLLGQVAKSVKIVLASRLASIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQI 1169
Query: 541 RVLNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKR 720
+VLNPRKLEV QA+++KL FELH LKNK+ VVVKGI +V+RA++ N+ ++KD + +
Sbjct: 1170 KVLNPRKLEVFPQANKDKLHFELHRLKNKLPAVVVKGITTVQRAVV-NKEQQKDRKNDVK 1228
Query: 721 ---LKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHG 891
+LLVEGTGLL+VMGI+GVDG T SNHI+EVQ TLGIEAAR IIDEI YTMSSHG
Sbjct: 1229 GETYELLVEGTGLLAVMGIEGVDGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHG 1288
Query: 892 MTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDR 1071
MTID+RHMMLLADLMT+KGEVLGITRHGVQKMKDSVLMLASFEKT DHLFNASVNGR D+
Sbjct: 1289 MTIDLRHMMLLADLMTYKGEVLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDK 1348
Query: 1072 IEGVSECIIMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 1191
IEGV+ECIIMGIPM IGTGM K+RQ V+ VELNY PDP++
Sbjct: 1349 IEGVTECIIMGIPMTIGTGMFKLRQRVEHVELNYQPDPMM 1388
>gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlisea aurea]
Length = 1368
Score = 506 bits (1304), Expect = e-141
Identities = 263/380 (69%), Positives = 313/380 (82%)
Frame = +1
Query: 7 SEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQM 186
S +D+S +++V S+ SGIT+QQL VFL C +RYH KK EPGTQM
Sbjct: 989 SLQDKSYVQSVVSSTSGITQQQLEVFLNMCFARYHPKKIECGTAVGAIGAQSIGEPGTQM 1048
Query: 187 TLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKT 366
TLKTFHFAGVASMNVTLGVPRI+EII+AAK+I TP+ITT LQ + I A++VKGRIEKT
Sbjct: 1049 TLKTFHFAGVASMNVTLGVPRIREIIDAAKKIKTPVITTELQRKDCGITARIVKGRIEKT 1108
Query: 367 LLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRV 546
LL ++AKS+K S+ +R ASIVI LD K I+ AQL +DAYTVKESIL TPKMKLKEQQ+RV
Sbjct: 1109 LLGEIAKSMKVSEMTRTASIVIKLDTKVIEAAQLFIDAYTVKESILLTPKMKLKEQQIRV 1168
Query: 547 LNPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLK 726
LN +KL V L+A+R+KL+FE L+NK+ VVVKGI VERAII++EA KDP+ K+LK
Sbjct: 1169 LNRQKLTVSLEAERSKLEFESWALQNKLKDVVVKGIKQVERAIIVDEANGKDPNQRKKLK 1228
Query: 727 LLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDI 906
L+VEGTG LSV+GI GVD T SNHI+EV Q LGIE+AR++IIDEIQYTMS HGMTIDI
Sbjct: 1229 LVVEGTGFLSVLGIQGVDARNTKSNHIMEVFQVLGIESARRQIIDEIQYTMSGHGMTIDI 1288
Query: 907 RHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVS 1086
RHMMLLADLMTFKGEVLGITR+GV+KM+DSVLMLASFE+TADHLFNA VNGRVDRIEGVS
Sbjct: 1289 RHMMLLADLMTFKGEVLGITRYGVRKMRDSVLMLASFERTADHLFNAPVNGRVDRIEGVS 1348
Query: 1087 ECIIMGIPMQIGTGMLKVRQ 1146
ECI++GIPM+ GTGM+K++Q
Sbjct: 1349 ECIMLGIPMRTGTGMMKIKQ 1368
>gb|EXB53229.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 1179
Score = 489 bits (1259), Expect = e-135
Identities = 260/395 (65%), Positives = 312/395 (78%), Gaps = 2/395 (0%)
Frame = +1
Query: 13 EDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTL 192
E+ + +N+ +SG T +QL VFL+TCISRYHSKK EPGTQMTL
Sbjct: 784 ENSATTKNIVLQLSGATARQLEVFLDTCISRYHSKKIEAGTAIGAIGAQSIGEPGTQMTL 843
Query: 193 KTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLL 372
KTFHFAGVASMNVTLGVPRIKEIIN AK+I+TPIIT L+CDNN A++V+GRIEK L
Sbjct: 844 KTFHFAGVASMNVTLGVPRIKEIINGAKKISTPIITAILECDNNVNFARIVRGRIEKISL 903
Query: 373 EQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLN 552
QVAKSIKT SR+AS+VITLDM+RIQ A LS+DA V++SILQTP++KLK++ +RVL+
Sbjct: 904 GQVAKSIKTVMTSRVASVVITLDMERIQDALLSIDANVVRDSILQTPRIKLKKEHIRVLD 963
Query: 553 PRKLEVI-LQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKL 729
+KLE++ +++R+KL L L + ++VKGI +VERA+I +E K+K +K+ KL
Sbjct: 964 FKKLEILPYESNRSKLYHHLQFLAKMLQNILVKGIKTVERAVISSE-KDKKTDISKKYKL 1022
Query: 730 LVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIR 909
LVEGTGLL VMG +GVDG T +NHIIEVQQTLGIEAAR IIDEI+YTM SHGM+ID R
Sbjct: 1023 LVEGTGLLGVMGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTR 1082
Query: 910 HMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSE 1089
HMMLLAD+MT +GEVLGITR G+QKM SVLMLASFEKTADHLFNASVNGR D+IEGVSE
Sbjct: 1083 HMMLLADVMTSRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSE 1142
Query: 1090 CIIMGIPMQIGTGMLKVRQSVQ-PVELNYGPDPII 1191
CIIMGIPMQIGTGM+KVRQ V P L+YGP PI+
Sbjct: 1143 CIIMGIPMQIGTGMIKVRQRVDVPPMLSYGPKPIL 1177
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 486 bits (1251), Expect = e-134
Identities = 265/395 (67%), Positives = 308/395 (77%), Gaps = 1/395 (0%)
Frame = +1
Query: 10 EEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMT 189
EE+ E A NISGIT +QL VFL+TCISRY K+ EPGTQMT
Sbjct: 995 EENLDIQEKFAKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMT 1054
Query: 190 LKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTL 369
LKTFHFAGVASMNVTLGVPRIKEIIN AKRI+TPIIT L+C+NN A++VKGRIE+T
Sbjct: 1055 LKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTT 1114
Query: 370 LEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVL 549
L QVAKSIK SRLA I + LDM+ IQ +QLS+D+ V+ESIL+ ++KLK+Q ++VL
Sbjct: 1115 LGQVAKSIKIVLTSRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVL 1174
Query: 550 NPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKL 729
+ KLEV Q DR+ + FELH LKN + VVVKGI +VERA+I + K K L
Sbjct: 1175 DAGKLEVHPQGDRSTIHFELHALKNLLPTVVVKGIETVERAVINKDNKVK-------YNL 1227
Query: 730 LVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIR 909
LVEGTGL +VMG +GV G +TTSNHIIEVQQTLGIEAARK II+EIQYTM+SHGM+IDIR
Sbjct: 1228 LVEGTGLQTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIR 1287
Query: 910 HMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSE 1089
HMMLLADLMTF+GEVLGITR G+QKM SVLMLASFEKTADHLFNASV+GR D+IEGVSE
Sbjct: 1288 HMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSE 1347
Query: 1090 CIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1191
CIIMGIPMQ+GTG+LKVRQ +Q V EL+YG DPII
Sbjct: 1348 CIIMGIPMQLGTGILKVRQRLQQVPELSYGLDPII 1382
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
PREDICTED: DNA-directed RNA polymerase III subunit
rpc1-like isoform X2 [Citrus sinensis]
Length = 1404
Score = 485 bits (1248), Expect = e-134
Identities = 261/400 (65%), Positives = 308/400 (77%), Gaps = 7/400 (1%)
Frame = +1
Query: 13 EDRS-CLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMT 189
+D+S LE V SGIT +QL VF++TC SRYH K+ EPGTQMT
Sbjct: 1004 DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMT 1063
Query: 190 LKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTL 369
LKTFHFAGVASMN+T GVPRIKEIIN AKRI+TPIIT L+C++NE A++VKGRIEKTL
Sbjct: 1064 LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTL 1123
Query: 370 LEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVL 549
L QVAKSIK SRLASIVI LDM+ IQ A L ++A VKESI+QTPK+KLK+Q ++VL
Sbjct: 1124 LGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL 1183
Query: 550 NPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEK----DPSGNK 717
+ RKLE+ D++K+ FEL++LKN + V+VKGI +VER +I + KEK + K
Sbjct: 1184 DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK 1243
Query: 718 RLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMT 897
+ +LLVEGTGL +VMG +G+DGCKT SNHI EVQQTLGIEAAR IIDEI TM +HGM+
Sbjct: 1244 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1303
Query: 898 IDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIE 1077
ID RHMMLLADLMTF+GEVLGITR G+QKM SVLMLASFEKTADHLFNASVNGR DRIE
Sbjct: 1304 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1363
Query: 1078 GVSECIIMGIPMQIGTGMLKVRQ-SVQPVELNYG-PDPII 1191
GVSECIIMGIPM +GTG+LK+RQ P L YG PDPI+
Sbjct: 1364 GVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1403
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 485 bits (1248), Expect = e-134
Identities = 261/400 (65%), Positives = 308/400 (77%), Gaps = 7/400 (1%)
Frame = +1
Query: 13 EDRS-CLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMT 189
+D+S LE V SGIT +QL VF++TC SRYH K+ EPGTQMT
Sbjct: 997 DDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMT 1056
Query: 190 LKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTL 369
LKTFHFAGVASMN+T GVPRIKEIIN AKRI+TPIIT L+C++NE A++VKGRIEKTL
Sbjct: 1057 LKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTL 1116
Query: 370 LEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVL 549
L QVAKSIK SRLASIVI LDM+ IQ A L ++A VKESI+QTPK+KLK+Q ++VL
Sbjct: 1117 LGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVL 1176
Query: 550 NPRKLEVILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEK----DPSGNK 717
+ RKLE+ D++K+ FEL++LKN + V+VKGI +VER +I + KEK + K
Sbjct: 1177 DFRKLEIFPPVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKK 1236
Query: 718 RLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMT 897
+ +LLVEGTGL +VMG +G+DGCKT SNHI EVQQTLGIEAAR IIDEI TM +HGM+
Sbjct: 1237 KYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMS 1296
Query: 898 IDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIE 1077
ID RHMMLLADLMTF+GEVLGITR G+QKM SVLMLASFEKTADHLFNASVNGR DRIE
Sbjct: 1297 IDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIE 1356
Query: 1078 GVSECIIMGIPMQIGTGMLKVRQ-SVQPVELNYG-PDPII 1191
GVSECIIMGIPM +GTG+LK+RQ P L YG PDPI+
Sbjct: 1357 GVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1396
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 481 bits (1237), Expect = e-133
Identities = 257/393 (65%), Positives = 307/393 (78%), Gaps = 5/393 (1%)
Frame = +1
Query: 28 LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHF 207
LE V ISGI+ +QL VF+ TCISRY SK EPGTQMTLKTFHF
Sbjct: 1002 LEKVGHKISGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHF 1061
Query: 208 AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 387
AGVASMN+T GVPRIKEIINAAKRI+TP+IT L+ D+N IA++VKGRIEKT+L QVAK
Sbjct: 1062 AGVASMNITQGVPRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAK 1121
Query: 388 SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLE 567
SIK SR AS+VITLDM+ I A+L +DA VKESILQTPK+KLKEQ V+VL+ RKLE
Sbjct: 1122 SIKIVITSRSASVVITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLE 1181
Query: 568 VILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE----KDPSGNKRLKLLV 735
V+ ADR+++ FELH+LKN + VVVKGI +VER ++ ++ KE K+ K +LLV
Sbjct: 1182 VVPPADRSQIHFELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLV 1241
Query: 736 EGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHM 915
EGTGL +VMGI+G+DG +T SNH++E++Q LGIEAARK IIDEI TM HGMTID RHM
Sbjct: 1242 EGTGLQAVMGIEGIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHM 1301
Query: 916 MLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECI 1095
MLLAD+MTF+GEVLGITR G+QKM S+LMLASFE+TADHLFNA+VNGR D+IEGV+ECI
Sbjct: 1302 MLLADVMTFRGEVLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECI 1361
Query: 1096 IMGIPMQIGTGMLKVRQSVQPVE-LNYGPDPII 1191
IMGIPMQIGTG+LKV Q V P L YGPDP++
Sbjct: 1362 IMGIPMQIGTGILKVIQRVDPPPMLRYGPDPVL 1394
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
sativus]
Length = 1400
Score = 478 bits (1230), Expect = e-132
Identities = 261/399 (65%), Positives = 306/399 (76%), Gaps = 4/399 (1%)
Frame = +1
Query: 7 SEEDRSCLEN-VASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQ 183
S+ D + N V NI+G+T +QL VFL+TC+SRYH+KK EPGTQ
Sbjct: 1004 SDNDNIVIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQ 1063
Query: 184 MTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEK 363
MTLKTFHFAGVASMNVTLGVPRIKEIIN AKRI+TPI+T L D+N IA++VK RIEK
Sbjct: 1064 MTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEK 1123
Query: 364 TLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVR 543
T L Q+AK I+ +SR A I I LDM++I+ A+L VDA VK++IL TPK+KLK + +
Sbjct: 1124 TNLGQIAKCIQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHIN 1183
Query: 544 VLNPRKLEVILQ-ADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGN-K 717
VL+ RKL V+ Q ADRNKL F LH LKN + VVVKGI +V RA+I +EKD + N K
Sbjct: 1184 VLDDRKLRVLPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVI---KEEKDKARNAK 1240
Query: 718 RLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMT 897
+ LLVEGTGL +VMG +GVDGC T SNHIIEVQQ LGIEAARK II+EI+YTM SHGM+
Sbjct: 1241 KFSLLVEGTGLQAVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMS 1300
Query: 898 IDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIE 1077
IDIRHMMLL DLMTF+GEVLGITR G+QKM SVLMLASFEKTADHLFNASVNGR D+IE
Sbjct: 1301 IDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIE 1360
Query: 1078 GVSECIIMGIPMQIGTGMLKVRQSVQ-PVELNYGPDPII 1191
GVSEC+IMGIPM +GTGMLKVRQ V P +L YGP I+
Sbjct: 1361 GVSECVIMGIPMPLGTGMLKVRQRVSVPQQLPYGPPAIL 1399
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 470 bits (1210), Expect = e-130
Identities = 255/378 (67%), Positives = 299/378 (79%), Gaps = 1/378 (0%)
Frame = +1
Query: 61 TRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFAGVASMNVTLG 240
+R++L VFL+TCISRY K+ EPGTQMTLKTFHFAGVASMNVTLG
Sbjct: 1448 SRKRLGVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 1507
Query: 241 VPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKSIKTSQASRLA 420
VPRIKEIIN AKRI+TPIIT L+C+NN A++VKGRIE+T L QVAKSIK SRLA
Sbjct: 1508 VPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLA 1567
Query: 421 SIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEVILQADRNKLQ 600
I + LDM+ IQ +QLS+D+ V+ESIL+ ++KLK+Q ++VL+ KLEV Q DR+ +
Sbjct: 1568 LIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHPQGDRSTIH 1627
Query: 601 FELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLKLLVEGTGLLSVMGIDGVD 780
FELH LKN + VVVKGI +VERA+I + K K LLVEGTGL +VMG +GV
Sbjct: 1628 FELHALKNLLPTVVVKGIETVERAVINKDNKVK-------YNLLVEGTGLQTVMGTEGVI 1680
Query: 781 GCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLMTFKGEVLG 960
G +TTSNHIIEVQQTLGIEAARK II+EIQYTM+SHGM+IDIRHMMLLADLMTF+GEVLG
Sbjct: 1681 GRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLG 1740
Query: 961 ITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMGIPMQIGTGMLKV 1140
ITR G+QKM SVLMLASFEKTADHLFNASV+GR D+IEGVSECIIMGIPMQ+GTG+LKV
Sbjct: 1741 ITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKV 1800
Query: 1141 RQSVQPV-ELNYGPDPII 1191
RQ +Q V EL+YG DPII
Sbjct: 1801 RQRLQQVPELSYGLDPII 1818
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 459 bits (1181), Expect = e-126
Identities = 247/393 (62%), Positives = 298/393 (75%), Gaps = 5/393 (1%)
Frame = +1
Query: 28 LENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHF 207
+E +A I G++ +Q+ VF++TCI+RY K+ EPGTQMTLKTFHF
Sbjct: 992 IERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHF 1051
Query: 208 AGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAK 387
AGVASMN+T GVPRIKEIIN AK+I+TPIIT L+ + N A++ KGRI+KT+L QVAK
Sbjct: 1052 AGVASMNITQGVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQKTVLGQVAK 1111
Query: 388 SIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLE 567
SIK SR AS+VITLDMK IQ AQLS+DA VKE+IL+TP++KLK Q ++VL+ RKLE
Sbjct: 1112 SIKIVMTSRSASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVLDTRKLE 1171
Query: 568 VILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKR----LKLLV 735
VI DR ++ FELH LKN + ++V+GI +VERA+I K+ D N + +LV
Sbjct: 1172 VIPLGDRERVHFELHNLKNLLPSIIVQGIKTVERAVIAQ--KKHDGKANDQELPTYNMLV 1229
Query: 736 EGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHM 915
EG GL VMG +GVDGCKTTSNH++EVQ+ LGIEAARK IIDEI TM HGM+IDIRHM
Sbjct: 1230 EGMGLDLVMGTEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHM 1289
Query: 916 MLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECI 1095
MLL DLMTFKGEVLGITR G+QKM SVLMLASFEKTADHL++A+V GR D+IEGVSECI
Sbjct: 1290 MLLGDLMTFKGEVLGITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECI 1349
Query: 1096 IMGIPMQIGTGMLKVRQSVQPVE-LNYGPDPII 1191
IMGIPMQIGTG+LKV+Q V P LNYG D II
Sbjct: 1350 IMGIPMQIGTGILKVQQRVDPPPVLNYGSDSII 1382
>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
gi|548832896|gb|ERM95665.1| hypothetical protein
AMTR_s00023p00196820 [Amborella trichopoda]
Length = 1383
Score = 451 bits (1161), Expect = e-124
Identities = 248/401 (61%), Positives = 303/401 (75%), Gaps = 6/401 (1%)
Frame = +1
Query: 10 EEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMT 189
+E S LE+VA+NISGI+RQQL VFLETCISRYH K+ EPGTQMT
Sbjct: 991 KEKFSGLEHVAANISGISRQQLRVFLETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMT 1050
Query: 190 LKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTL 369
LKTFHFAGVASMN+TLGVPRIKEI+ A+K+I+TPIIT TL CDN+E A++VKGRIEKTL
Sbjct: 1051 LKTFHFAGVASMNITLGVPRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTL 1110
Query: 370 LEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVL 549
L +VAK++K S ASI ITLDMKRI+ Q+++DA TV +SI + K K+ +++V
Sbjct: 1111 LGEVAKTVKISVTPTQASINITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVK 1170
Query: 550 N----PRKLEVIL-QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGN 714
P KL+++L + R ++ + LH L++ + K++VKGI +VERA+I N K K
Sbjct: 1171 PTFTLPDKLKILLPEIGRKEVLYSLHLLQSLLPKIIVKGIPTVERAVI-NNVKGK----- 1224
Query: 715 KRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGM 894
L LLVEGT LL+VMG GVDG TTSNHI+EV+ TLGIEAARK IIDEIQYTM SHGM
Sbjct: 1225 --LNLLVEGTNLLAVMGTPGVDGRNTTSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGM 1282
Query: 895 TIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRI 1074
+ID+RHMMLLADLMTF+G VLGI R G+ KMK+SVLMLASFE+TAD LF+A+ GRVD I
Sbjct: 1283 SIDLRHMMLLADLMTFRGLVLGIQRFGITKMKESVLMLASFERTADILFDATTRGRVDTI 1342
Query: 1075 EGVSECIIMGIPMQIGTGMLKVRQ-SVQPVELNYGPDPIIC 1194
GVSECIIMG+PMQIGTG+L V+Q Q +L YGPDPIIC
Sbjct: 1343 AGVSECIIMGVPMQIGTGILSVQQRPEQLAKLTYGPDPIIC 1383
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 448 bits (1152), Expect = e-123
Identities = 240/396 (60%), Positives = 298/396 (75%), Gaps = 2/396 (0%)
Frame = +1
Query: 10 EEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMT 189
E S E++A+NISGI+ +QL VFL+TC+SRYH KK EPGTQMT
Sbjct: 929 ERHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMT 988
Query: 190 LKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTL 369
LKTFHFAGVASMNVTLGVPRIKEIINAAK+I+TPIIT L + + + A++VKG +EK +
Sbjct: 989 LKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAV 1048
Query: 370 LEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVL 549
L +VA++IK S ++V+ LDM+RI+ + + A +V+ SIL PK+KLK + VRV+
Sbjct: 1049 LGEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVI 1108
Query: 550 NPRKLEVILQA-DRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLK 726
+ KL + D++KL +ELH LK+ + KV+VKGI +VERA+I +E D KR K
Sbjct: 1109 DKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEEND----KRYK 1164
Query: 727 LLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDI 906
LLVEGT LL+VMG GVD KT SNHI+EV +TLGIEAAR+ IIDEIQYTM SHGM ID
Sbjct: 1165 LLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDS 1224
Query: 907 RHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVS 1086
RHMMLLADLMT+KGE+LGITR+G+ KMK SVLMLASFEKTA+HLFNAS +GR D+IEGVS
Sbjct: 1225 RHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVS 1284
Query: 1087 ECIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1191
ECIIMGIPMQ+GTG+LKVRQ + + E Y PDPI+
Sbjct: 1285 ECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1320
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 448 bits (1152), Expect = e-123
Identities = 240/396 (60%), Positives = 298/396 (75%), Gaps = 2/396 (0%)
Frame = +1
Query: 10 EEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMT 189
E S E++A+NISGI+ +QL VFL+TC+SRYH KK EPGTQMT
Sbjct: 991 ERHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMT 1050
Query: 190 LKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTL 369
LKTFHFAGVASMNVTLGVPRIKEIINAAK+I+TPIIT L + + + A++VKG +EK +
Sbjct: 1051 LKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAV 1110
Query: 370 LEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVL 549
L +VA++IK S ++V+ LDM+RI+ + + A +V+ SIL PK+KLK + VRV+
Sbjct: 1111 LGEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVI 1170
Query: 550 NPRKLEVILQA-DRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRLK 726
+ KL + D++KL +ELH LK+ + KV+VKGI +VERA+I +E D KR K
Sbjct: 1171 DKSKLRIYPAGIDKSKLLYELHHLKSMLPKVIVKGIPTVERAVISETGEEND----KRYK 1226
Query: 727 LLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDI 906
LLVEGT LL+VMG GVD KT SNHI+EV +TLGIEAAR+ IIDEIQYTM SHGM ID
Sbjct: 1227 LLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDS 1286
Query: 907 RHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVS 1086
RHMMLLADLMT+KGE+LGITR+G+ KMK SVLMLASFEKTA+HLFNAS +GR D+IEGVS
Sbjct: 1287 RHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVS 1346
Query: 1087 ECIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1191
ECIIMGIPMQ+GTG+LKVRQ + + E Y PDPI+
Sbjct: 1347 ECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1382
>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
brachyantha]
Length = 1389
Score = 443 bits (1140), Expect = e-122
Identities = 240/398 (60%), Positives = 299/398 (75%), Gaps = 2/398 (0%)
Frame = +1
Query: 4 HSEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQ 183
H +D S E++A+NISGI+ +QL VFL+TC+SRYHSKK EPGTQ
Sbjct: 999 HVGKDSSIEESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQ 1058
Query: 184 MTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEK 363
MTLKTFHFAGVASMNVTLGVPRIKEIINAAK+I+TPIIT L + + A++VKG +EK
Sbjct: 1059 MTLKTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEK 1118
Query: 364 TLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVR 543
+L +VA+ IK S ++V+ LDM+RI+ + + A +V+ SIL P++KLK + VR
Sbjct: 1119 AVLGEVAEDIKIVLKSSQPNLVVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVR 1178
Query: 544 VLNPRKLEVILQA-DRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKR 720
V++ KL V A D++KL +ELH LK+ + KV+VKGI +VERA+I +G+K
Sbjct: 1179 VIDKAKLRVYPTAIDKSKLLYELHNLKSMLPKVIVKGIPTVERAVI-------SQTGDK- 1230
Query: 721 LKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTI 900
LLVEGT LL+VMG GVD KT SNHI+EV +TLGIEAAR+ IIDEIQYTM+SHGM I
Sbjct: 1231 YSLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNI 1290
Query: 901 DIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEG 1080
D RHMMLLADLMT+KGE+LGITR+G+ KMK SVLMLASFEKTA+HLFNAS +GR D+IEG
Sbjct: 1291 DSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEG 1350
Query: 1081 VSECIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1191
VSECIIMGIPMQ+GTG+LKVRQ + + E Y PDPI+
Sbjct: 1351 VSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDPIL 1388
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 441 bits (1135), Expect = e-121
Identities = 235/374 (62%), Positives = 285/374 (76%), Gaps = 2/374 (0%)
Frame = +1
Query: 31 ENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMTLKTFHFA 210
E +A +SGIT +QL VFL+TC+ RY K+ EPGTQMTLKTFHFA
Sbjct: 1020 EKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFA 1079
Query: 211 GVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTLLEQVAKS 390
GVASMN+T GVPRIKEIIN AKRI+TPIIT L+ ++N A+++KGRI+KT+L QVAKS
Sbjct: 1080 GVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKS 1139
Query: 391 IKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVLNPRKLEV 570
IK SR AS+ +TLDMK I+ AQLS+DA V+E IL+TPK+K K Q++ VL KLEV
Sbjct: 1140 IKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEV 1199
Query: 571 ILQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKE--KDPSGNKRLKLLVEGT 744
DRNKL FELH+LKN + VVVKGI +VER +I + + ++ G + + VEG
Sbjct: 1200 FPGGDRNKLHFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVEGM 1259
Query: 745 GLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLL 924
GL +VMG +GVDG KT SNHIIEVQ+TLGIEAARK IIDEI+ TM SHGM+IDIRHMMLL
Sbjct: 1260 GLQAVMGTEGVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLL 1319
Query: 925 ADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEGVSECIIMG 1104
AD+MT +G VLGITR G+QKM SVLMLASFEKT+DHLFNASV G+ D+IEGVSECIIMG
Sbjct: 1320 ADVMTSRGVVLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIMG 1379
Query: 1105 IPMQIGTGMLKVRQ 1146
IP+ IGTG+LK++Q
Sbjct: 1380 IPVAIGTGVLKIQQ 1393
>ref|XP_001757221.1| predicted protein [Physcomitrella patens] gi|162691719|gb|EDQ78080.1|
predicted protein [Physcomitrella patens]
Length = 1397
Score = 441 bits (1135), Expect = e-121
Identities = 244/399 (61%), Positives = 296/399 (74%), Gaps = 7/399 (1%)
Frame = +1
Query: 16 DRSCLENVASNISGITRQQLI-----VFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGT 180
D++ LE+ A+ ISG+T +QL VFL+TCI RYH K+ EPGT
Sbjct: 1006 DQTLLESTATYISGLTSRQLEICLLQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGT 1065
Query: 181 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIE 360
QMTLKTFHFAGVASMN+TLGVPRIKEIINA+K I+TPIIT L N+E A++VKGRIE
Sbjct: 1066 QMTLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAVLVSGNDEKAARIVKGRIE 1125
Query: 361 KTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQV 540
KT L +VAKSIKT + A I + LDMKRI QL +++ TV +I+QTPK+KLK +
Sbjct: 1126 KTTLGEVAKSIKTVLRASQAIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNI 1185
Query: 541 RVLNPRKLEVIL-QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNK 717
R+++ KL VI D+ KL F LH+L N + KV+VKGI SVERA+I KEK
Sbjct: 1186 RIVDRDKLIVIPPDQDKGKLYFYLHSLCNMLPKVIVKGIPSVERAVI---NKEKGV---- 1238
Query: 718 RLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMT 897
LLVEGT L +VMGI GV+G T SNH+IE +QTLGIEAAR IIDEIQYTM SHGMT
Sbjct: 1239 -YNLLVEGTNLKAVMGISGVNGKLTKSNHVIEAEQTLGIEAARNVIIDEIQYTMGSHGMT 1297
Query: 898 IDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIE 1077
ID RHMMLLAD+MT+KGEVLGITR G+ KMKDSVLMLASFEKT DHLF+A+++GRVD+IE
Sbjct: 1298 IDARHMMLLADVMTYKGEVLGITRFGIAKMKDSVLMLASFEKTTDHLFDAAIHGRVDKIE 1357
Query: 1078 GVSECIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1191
GVSECIIMGIPM IGTG+ K+RQ V+ + +L+YGP P++
Sbjct: 1358 GVSECIIMGIPMPIGTGLFKIRQKVEKLPKLSYGPTPLL 1396
>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
max]
Length = 1391
Score = 440 bits (1132), Expect = e-121
Identities = 238/397 (59%), Positives = 291/397 (73%), Gaps = 2/397 (0%)
Frame = +1
Query: 7 SEEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQM 186
++E L+ ISGITR+QL VFL C+SRYHSKK EPGTQM
Sbjct: 1000 TDEHSQNLKKFGQRISGITRKQLDVFLNICLSRYHSKKMEAGAPVGATGAHSIGEPGTQM 1059
Query: 187 TLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKT 366
TLKTFHFAGVASMNVTLGVPR+KEI+N K+I+TPIIT L+ D+N A++VKGRIEKT
Sbjct: 1060 TLKTFHFAGVASMNVTLGVPRVKEIMNGNKKISTPIITAILERDDNANTARIVKGRIEKT 1119
Query: 367 LLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRV 546
L QVAKSIK SR AS+VITLDMKRIQ A L++DA VKESIL+T K KLK + +++
Sbjct: 1120 NLGQVAKSIKVVMTSRSASVVITLDMKRIQDAHLNIDANIVKESILRTKKTKLKPEHIKI 1179
Query: 547 LNPRKLEVILQ-ADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNKRL 723
L+ +KLEV+ Q DR+K+ F+LH LKN + VVVKGI +V+R +I + K ++
Sbjct: 1180 LDIKKLEVVPQDVDRSKIHFQLHYLKNLLPTVVVKGIKTVDRVVISKDTKA------EKF 1233
Query: 724 KLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTM-SSHGMTI 900
+LLVEGTG VMG++G+DG KT SNHI EV+ TLGIEAAR+ I+ EI+YTM +HGM I
Sbjct: 1234 RLLVEGTGFREVMGVEGIDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNI 1293
Query: 901 DIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIEG 1080
DIRHMMLLAD+MT G +LGI R G+ KM SVLMLASFE+TAD LF ASV GR D I G
Sbjct: 1294 DIRHMMLLADMMTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGG 1353
Query: 1081 VSECIIMGIPMQIGTGMLKVRQSVQPVELNYGPDPII 1191
VSE IIMGIP+QIGTGM+KV+Q + P EL +G PI+
Sbjct: 1354 VSESIIMGIPIQIGTGMIKVKQRLDPPELPHGTSPIL 1390
>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Fragaria vesca subsp. vesca]
Length = 1390
Score = 438 bits (1127), Expect = e-120
Identities = 237/387 (61%), Positives = 284/387 (73%), Gaps = 8/387 (2%)
Frame = +1
Query: 10 EEDRSCLENVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGTQMT 189
E + L+N+ NISG+T +QL VFL+TCISRYHSKK EPGTQMT
Sbjct: 999 EVKSATLQNIVQNISGVTPRQLKVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMT 1058
Query: 190 LKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIEKTL 369
LKTFHFAGVASMNVTLGVPRIKEIIN AK I+TPIITT L+CDNN +IA++V GRIEKT
Sbjct: 1059 LKTFHFAGVASMNVTLGVPRIKEIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTN 1118
Query: 370 LEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQVRVL 549
L QVA+ I+ + R A + + LDM IQ A LS+DA VK+SIL TP++KLK + +RV
Sbjct: 1119 LGQVAECIEIVMSPRAAYVEVKLDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVP 1178
Query: 550 NPRKLEVIL-QADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSG----- 711
+ + +EV + DR KL F L+ LK+ + V+V+GI ++ER +I E ++D
Sbjct: 1179 DNQTVEVHSHEKDRRKLHFHLYYLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKC 1238
Query: 712 --NKRLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSS 885
K+ KL EG GLL+VM GVDGCKTTSN IIEVQQTLGIEAAR II+EI+YTM S
Sbjct: 1239 GDEKKYKLFAEGKGLLAVMSTKGVDGCKTTSNDIIEVQQTLGIEAARTCIIEEIKYTMKS 1298
Query: 886 HGMTIDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRV 1065
HGM ID RHMMLLAD+MTF+G VLGITR GVQ+M SVLMLASFE+T DHLFNASV G V
Sbjct: 1299 HGMNIDDRHMMLLADVMTFRGLVLGITRFGVQQMGKSVLMLASFERTDDHLFNASVQGTV 1358
Query: 1066 DRIEGVSECIIMGIPMQIGTGMLKVRQ 1146
D+IEGVSE IIMGIPM IGTGM K++Q
Sbjct: 1359 DKIEGVSESIIMGIPMPIGTGMFKIKQ 1385
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 436 bits (1121), Expect = e-119
Identities = 237/399 (59%), Positives = 299/399 (74%), Gaps = 3/399 (0%)
Frame = +1
Query: 4 HSEEDRSCLE-NVASNISGITRQQLIVFLETCISRYHSKKXXXXXXXXXXXXXXXXEPGT 180
H E+ SC+E +VA+ ISGI+ +QL VFL+TC+SRY SKK EPGT
Sbjct: 995 HVEKKDSCVEESVAAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGT 1054
Query: 181 QMTLKTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTTLQCDNNEIIAKLVKGRIE 360
QMTLKTFHFAGVASMNVTLGVPRIKEIINAA++I+TPIIT L + + A++VKG +E
Sbjct: 1055 QMTLKTFHFAGVASMNVTLGVPRIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSME 1114
Query: 361 KTLLEQVAKSIKTSQASRLASIVITLDMKRIQGAQLSVDAYTVKESILQTPKMKLKEQQV 540
K +L +VA +I+ S ++++ LDM+ I+ + + A +V+ SIL PK+KLK + V
Sbjct: 1115 KAVLGEVAVAIQIVLKSSQPNLIVKLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHV 1174
Query: 541 RVLNPRKLEVI-LQADRNKLQFELHTLKNKISKVVVKGINSVERAIIINEAKEKDPSGNK 717
RV++ KL + D+ KLQ ELH LK+ + KV+VKGI +VER ++I+E K K+ + +
Sbjct: 1175 RVIDRAKLRIYPAGTDKRKLQLELHNLKSILPKVIVKGIPTVER-VVIDEVKVKNET--E 1231
Query: 718 RLKLLVEGTGLLSVMGIDGVDGCKTTSNHIIEVQQTLGIEAARKKIIDEIQYTMSSHGMT 897
R +LLVEGT LL+VMG GVD KT SNHI+E QTLGIEAAR+ IIDEIQYTM SHGM
Sbjct: 1232 RYQLLVEGTNLLAVMGTPGVDATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMN 1291
Query: 898 IDIRHMMLLADLMTFKGEVLGITRHGVQKMKDSVLMLASFEKTADHLFNASVNGRVDRIE 1077
ID RHMMLLADLMT+KGE+LGITR+G+ KMK SVLMLASFEKT++HLFNAS +GR D+IE
Sbjct: 1292 IDRRHMMLLADLMTYKGEILGITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIE 1351
Query: 1078 GVSECIIMGIPMQIGTGMLKVRQSVQPV-ELNYGPDPII 1191
GVSECIIMGIPMQ+GTG+LKVRQ + V E Y PDPI+
Sbjct: 1352 GVSECIIMGIPMQLGTGILKVRQRLDHVPEFKYQPDPIL 1390