BLASTX nr result
ID: Rehmannia26_contig00007629
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00007629
(1715 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ... 602 e-169
emb|CBI32760.3| unnamed protein product [Vitis vinifera] 602 e-169
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe... 591 e-166
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob... 584 e-164
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,... 574 e-161
ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,... 570 e-160
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,... 568 e-159
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,... 568 e-159
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,... 568 e-159
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [... 568 e-159
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei... 558 e-156
ref|XP_002326192.1| predicted protein [Populus trichocarpa] 558 e-156
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr... 556 e-155
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr... 556 e-155
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr... 556 e-155
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,... 542 e-151
ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF,... 538 e-150
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,... 533 e-149
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis] 528 e-147
ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Caps... 526 e-146
>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 602 bits (1552), Expect = e-169
Identities = 316/516 (61%), Positives = 398/516 (77%), Gaps = 15/516 (2%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPL-LCLKADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RP LK + T+Q TL+KRQ+ + +S+ E N + D ++Y+ +F+
Sbjct: 61 PTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIV--VSADEENSD-DHNQYMVNFE 117
Query: 1522 LQLLRRPELWYLWASLQKEEQSFSSTSV---------NLMGVEADHVVALAREAFSACKE 1370
QLL +P LWY S Q E+S S+S+ N M V+ V+ALA++A SA K+
Sbjct: 118 RQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQ 177
Query: 1369 AASIAKDARLFGAHLDD-PSSIRGLASVP----VRRIVRSTRLLERQTKRRVPKPKIEIQ 1205
A S+ ++A+L GA L+D PS G S P + VRSTRLLER++K+R PK+ +
Sbjct: 178 AVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKR-RNPKVAVH 236
Query: 1204 ETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRS 1025
E + R+ E RK NEG+DP DPLR+FLWGPET +LLTAKEESELIV+IQELM+L+EV+
Sbjct: 237 ENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKK 296
Query: 1024 RLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGL 845
RL++ REPT+VEWAEA G SC VLQSQ+H GN SR KLIYAN RMVVHIAKQYQGRGL
Sbjct: 297 RLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGL 356
Query: 844 SLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSL 665
+LQDLLQEGSMGLM SVEKFKP AGCRFA+YAYWWIRQ++RKA+FQHSRTIRLPEN+YSL
Sbjct: 357 NLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSL 416
Query: 664 LSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTY 485
L KV EAK+ +Q+G+H PTKE+IA G+++E+L++LL R+PLSMQQPVW DQ+TT+
Sbjct: 417 LGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTF 476
Query: 484 QEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAG 305
QE+TADT IE+P+V +KQ+MRQH RNLL VL P+ER+IIRLRFGI G ++LSEIG
Sbjct: 477 QEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLV 536
Query: 304 FGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
FG SKERVRQLE RAL+KLKQCLSS GLE+Y D+L+
Sbjct: 537 FGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572
>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 602 bits (1552), Expect = e-169
Identities = 316/516 (61%), Positives = 398/516 (77%), Gaps = 15/516 (2%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPL-LCLKADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RP LK + T+Q TL+KRQ+ + +S+ E N + D ++Y+ +F+
Sbjct: 50 PTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIV--VSADEENSD-DHNQYMVNFE 106
Query: 1522 LQLLRRPELWYLWASLQKEEQSFSSTSV---------NLMGVEADHVVALAREAFSACKE 1370
QLL +P LWY S Q E+S S+S+ N M V+ V+ALA++A SA K+
Sbjct: 107 RQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQ 166
Query: 1369 AASIAKDARLFGAHLDD-PSSIRGLASVP----VRRIVRSTRLLERQTKRRVPKPKIEIQ 1205
A S+ ++A+L GA L+D PS G S P + VRSTRLLER++K+R PK+ +
Sbjct: 167 AVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKR-RNPKVAVH 225
Query: 1204 ETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRS 1025
E + R+ E RK NEG+DP DPLR+FLWGPET +LLTAKEESELIV+IQELM+L+EV+
Sbjct: 226 ENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKK 285
Query: 1024 RLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGL 845
RL++ REPT+VEWAEA G SC VLQSQ+H GN SR KLIYAN RMVVHIAKQYQGRGL
Sbjct: 286 RLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGL 345
Query: 844 SLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSL 665
+LQDLLQEGSMGLM SVEKFKP AGCRFA+YAYWWIRQ++RKA+FQHSRTIRLPEN+YSL
Sbjct: 346 NLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSL 405
Query: 664 LSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTY 485
L KV EAK+ +Q+G+H PTKE+IA G+++E+L++LL R+PLSMQQPVW DQ+TT+
Sbjct: 406 LGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTF 465
Query: 484 QEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAG 305
QE+TADT IE+P+V +KQ+MRQH RNLL VL P+ER+IIRLRFGI G ++LSEIG
Sbjct: 466 QEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLV 525
Query: 304 FGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
FG SKERVRQLE RAL+KLKQCLSS GLE+Y D+L+
Sbjct: 526 FGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561
>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
Length = 568
Score = 591 bits (1523), Expect = e-166
Identities = 316/519 (60%), Positives = 397/519 (76%), Gaps = 18/519 (3%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEY---VN 1532
PTSVL+Q+QR+E +PLL LK D T + LD+ Q+ G S E ++D D++ VN
Sbjct: 57 PTSVLLQEQRDEFKPLLHVLKEDKTSEAALDRMQI--ETGASVHE---DLDIDDFYPLVN 111
Query: 1531 DFQLQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSAC 1376
+ QLL ++ +++SLQ +S ++ S M VE +VVALA++A SA
Sbjct: 112 SSKPQLLNH-DILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSAS 170
Query: 1375 KEAASIAKDARLFGAHLDDPSSIRGLAS--VPVRRIVRSTRLLERQTKR----RVPKPKI 1214
+EAAS+A+D++ GA DD LA+ V + VRSTR+LER+ KR +VPK K+
Sbjct: 171 REAASLAEDSQSMGADFDD-LGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKV 229
Query: 1213 EIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQE 1034
E+N + +K +EGF+PNDPLR+FLWGPET QLLTAKEE+ELI ++Q+L KL+E
Sbjct: 230 IGHESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEE 289
Query: 1033 VRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQG 854
V+SRL+TQF REPTL+EWAEA G SC +L+SQ+ G SSR+KLIYAN RMVVHIAKQYQG
Sbjct: 290 VKSRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQG 349
Query: 853 RGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENV 674
RGL LQDL+QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQ++RKA+FQHSRTIRLPENV
Sbjct: 350 RGLGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENV 409
Query: 673 YSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQN 494
YSLL KV EAKKSC+Q+GNH P KE++A G++VE+LEKLLY R+PLSMQQPVW DQ+
Sbjct: 410 YSLLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQD 469
Query: 493 TTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEI 314
TT+QE+TADT +E+P+V +KQ+MRQH R+LLS+LN RER+IIRLR+GIE G+Q+SLSEI
Sbjct: 470 TTFQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEI 529
Query: 313 GAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
G FGLSKERVRQLESRA KL+Q L SQGL AY +L+
Sbjct: 530 GGMFGLSKERVRQLESRAFLKLRQSLGSQGLGAYGPLLV 568
>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
Length = 568
Score = 584 bits (1506), Expect = e-164
Identities = 308/520 (59%), Positives = 395/520 (75%), Gaps = 19/520 (3%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL---KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVND 1529
PTSVL+Q+QR++ RPL L K D Y DK+Q+ L+ + N
Sbjct: 56 PTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQ----LG 111
Query: 1528 FQLQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSACK 1373
F+ +LL+ P+L L + L+ EE QS ++ + ++ VE ++VALA++A SA K
Sbjct: 112 FEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASK 171
Query: 1372 EAASIAKDARLFGAHLDDP-SSIRGLAS---VPVRR----IVRSTRLLERQTKRRVPKPK 1217
+AAS+++D +L LDD S+ G A+ +PV + VRSTR LERQ+KRR +PK
Sbjct: 172 QAASLSEDLKL---DLDDSLSNSLGSANSCTLPVEKEEVVTVRSTRRLERQSKRRRVQPK 228
Query: 1216 IEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQ 1037
+ I+ET R+ + RK +EGFDPNDPLR+FLWGPET QLLTAKEESEL ++Q LM+L+
Sbjct: 229 VTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLE 288
Query: 1036 EVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQ 857
+V+S+L++QF REPTLVEWAEA G C LQ+++H GNSSRDKLIYAN RMVVHIAKQYQ
Sbjct: 289 KVKSKLQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQ 348
Query: 856 GRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPEN 677
RGLSLQDLLQEGSMGLMKSVE+FKPQ GCRFATYAYWWIRQ+IRK++ QHSRT+RLPEN
Sbjct: 349 SRGLSLQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPEN 408
Query: 676 VYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQ 497
V++LLSKV +AKKS +++GNH P+KE++A G++VE+L+KLL+T R+PLSMQQ VW+DQ
Sbjct: 409 VHTLLSKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQ 468
Query: 496 NTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSE 317
+ T+QE+T DT IE+P+V +KQ+MRQH RNLLSVL+PRER II+LRFGIE ++ SLSE
Sbjct: 469 DITFQEVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSE 528
Query: 316 IGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
IG FGLSKERVRQLESRALYKLKQCL+ GL AY D+L+
Sbjct: 529 IGNMFGLSKERVRQLESRALYKLKQCLNKHGLGAYVDLLV 568
>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Solanum tuberosum]
Length = 562
Score = 574 bits (1479), Expect = e-161
Identities = 317/520 (60%), Positives = 380/520 (73%), Gaps = 16/520 (3%)
Frame = -2
Query: 1711 GRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYV 1535
GR P S + +Q+ E+R L L K + T T+D+R L+ S E N VD ++ +
Sbjct: 48 GRHVPASAIGPEQQFENRLQLHLVKEEKTSLATIDRR--LVDAASSELEENDAVDSEQNI 105
Query: 1534 NDFQLQLLRRPELWYLW--------ASLQKEEQSFSSTSVNLMGVEADHVVALAREAFSA 1379
N Q+QLLR P Y + L ++ S LM E VVALAR+A A
Sbjct: 106 NALQVQLLRCPGPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLA 165
Query: 1378 CKEAASIAKDARLFGAHLDDPSSIRGLASVPV------RRIVRSTRLLERQTKRR-VPKP 1220
+EAA +A+D++L LDD + L++ V +R VRSTR ERQ+++R PKP
Sbjct: 166 SREAALLAEDSKL----LDDSNFPNFLSTNLVDDKLKEQRTVRSTRFTERQSRKRGAPKP 221
Query: 1219 KIEIQETNHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKL 1040
++QETN +P+ RK NE D NDPLRMFLWGPET QLLTAKEESELIVKIQ MKL
Sbjct: 222 TQQVQETNRSGRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMKL 281
Query: 1039 QEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQY 860
QEV+ +L+ QF+ EPT VEWAEAAG + L+SQ+ G SSR+KLI AN RMVVHIAKQY
Sbjct: 282 QEVKHQLQIQFAHEPTSVEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQY 341
Query: 859 QGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPE 680
QGRGL+LQDLLQEGSMGLMKSVEKFKPQAGCRF TYAYWWIRQS+RKA+FQHSRTIRLPE
Sbjct: 342 QGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPE 401
Query: 679 NVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMD 500
NVY+LLSKV +AKK C+QQGN YPTKEDIA+CAG+SVERL+ LL R PLSMQQ VW D
Sbjct: 402 NVYALLSKVKDAKKECIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSD 461
Query: 499 QNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLS 320
Q+TT+QEITAD IE PE+ SKQ+MR+H R LL+VL+P+ERKIIRLRFGI G+ KSLS
Sbjct: 462 QDTTFQEITADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLS 521
Query: 319 EIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 200
EIG FGLSKERVRQLE+RALYKLKQ L+ GL+AY+D+L
Sbjct: 522 EIGTVFGLSKERVRQLETRALYKLKQNLNKHGLDAYSDLL 561
>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Solanum lycopersicum]
Length = 563
Score = 570 bits (1468), Expect = e-160
Identities = 317/521 (60%), Positives = 382/521 (73%), Gaps = 17/521 (3%)
Frame = -2
Query: 1711 GRPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYV 1535
GR P S + +Q E+R L L K + T T+D+R L+ S E N VD ++ +
Sbjct: 48 GRYVPASAIGPEQHFENRLQLHLVKEEKTSLATIDRR--LVEAASSELEENDAVDSEQNI 105
Query: 1534 NDFQLQLLRRPELWYLW--------ASLQKEEQSFSSTSVNLMGVEADHVVALAREAFSA 1379
N Q+QLL P Y + L ++ S LM E VVALAR+A A
Sbjct: 106 NALQVQLLHWPGPSYSFPPYYLKGKGPLSPNKEPLHSKGDKLMNFEPHSVVALARKALLA 165
Query: 1378 CKEAASIAKDARLFGAHLDDPSSIRGLASVPV------RRIVRSTRLLERQTKRR-VPKP 1220
KEAA +A+D++L LDD L++ V +R VRSTR +ERQ+++R PKP
Sbjct: 166 SKEAALLAEDSKL----LDDSHFPNFLSTHLVDDKLKEQRTVRSTRFIERQSRKRGAPKP 221
Query: 1219 KIEIQETNHRR-KPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMK 1043
E+QETN+R +P+ RK NE D NDPLRMFLWGPET QLLTAKEESELIVKIQ MK
Sbjct: 222 IQEVQETNNRSGRPDVRRKVNESIDLNDPLRMFLWGPETKQLLTAKEESELIVKIQISMK 281
Query: 1042 LQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQ 863
LQEV+ +L+ QF+REPT +EWAEAAG + L+SQ+ G SSR+KLI AN RMVVHIAKQ
Sbjct: 282 LQEVKHQLQIQFAREPTSLEWAEAAGITSRELKSQLLSGKSSREKLINANLRMVVHIAKQ 341
Query: 862 YQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLP 683
YQGRGL+LQDLLQEGSMGLMKSVEKFKPQAGCRF TYAYWWIRQS+RKA+FQHSRTIRLP
Sbjct: 342 YQGRGLNLQDLLQEGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLP 401
Query: 682 ENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWM 503
ENVY+LLSKV +AK+ C++QGN +PTKEDIA+CAG+SVERL+ LL R PLSMQQ VW
Sbjct: 402 ENVYALLSKVKDAKRECIRQGNRHPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWS 461
Query: 502 DQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSL 323
DQ+TT+QEITAD IE PE+ SKQ+MR+H R LL+VL+P+ERKIIRLRFGI G+ KSL
Sbjct: 462 DQDTTFQEITADNAIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSL 521
Query: 322 SEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADML 200
SEIGA FGLSKERVRQLE+RALYKLKQ L+ GL+AY+D+L
Sbjct: 522 SEIGAVFGLSKERVRQLETRALYKLKQNLNKHGLDAYSDLL 562
>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X3 [Citrus sinensis]
Length = 561
Score = 568 bits (1465), Expect = e-159
Identities = 298/513 (58%), Positives = 382/513 (74%), Gaps = 12/513 (2%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPLL + K D T Q T D R M E + D D+ V D +
Sbjct: 52 PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVEEKNSGDLDQLVQDLE 109
Query: 1522 LQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSACKEA 1367
Q L P+LW L +++ E QS S+ + + E VALAR+A SA KEA
Sbjct: 110 HQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 169
Query: 1366 ASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTKRR-VPKPKIEIQETN 1196
AS+A++ +L GA D S L P+ + VRST+ LER++K+R V KPK+ ET
Sbjct: 170 ASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETY 228
Query: 1195 HRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLE 1016
+ RK +K +EGFD NDPLR+FLWGPET +LLTA EE ELI +IQ+L++L++ +S+L+
Sbjct: 229 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 288
Query: 1015 TQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQ 836
+QF REPTL+EWA+A G SC L+S++H GNSSR+KLI AN R+VVH+AKQYQGRG+ L
Sbjct: 289 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 348
Query: 835 DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSK 656
DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHSRTIRLPEN+Y+LLS+
Sbjct: 349 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSR 408
Query: 655 VYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEI 476
V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSMQQPVW DQ+TT+QEI
Sbjct: 409 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEI 468
Query: 475 TADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGL 296
TADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE G+ KSLSE+G FGL
Sbjct: 469 TADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 528
Query: 295 SKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
SKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 529 SKERVRQLESRALYRLKQSLGGKASYGYADLLI 561
>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X2 [Citrus sinensis]
Length = 569
Score = 568 bits (1465), Expect = e-159
Identities = 298/513 (58%), Positives = 382/513 (74%), Gaps = 12/513 (2%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPLL + K D T Q T D R M E + D D+ V D +
Sbjct: 60 PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVEEKNSGDLDQLVQDLE 117
Query: 1522 LQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSACKEA 1367
Q L P+LW L +++ E QS S+ + + E VALAR+A SA KEA
Sbjct: 118 HQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 177
Query: 1366 ASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTKRR-VPKPKIEIQETN 1196
AS+A++ +L GA D S L P+ + VRST+ LER++K+R V KPK+ ET
Sbjct: 178 ASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETY 236
Query: 1195 HRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLE 1016
+ RK +K +EGFD NDPLR+FLWGPET +LLTA EE ELI +IQ+L++L++ +S+L+
Sbjct: 237 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
Query: 1015 TQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQ 836
+QF REPTL+EWA+A G SC L+S++H GNSSR+KLI AN R+VVH+AKQYQGRG+ L
Sbjct: 297 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 356
Query: 835 DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSK 656
DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHSRTIRLPEN+Y+LLS+
Sbjct: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSR 416
Query: 655 VYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEI 476
V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSMQQPVW DQ+TT+QEI
Sbjct: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEI 476
Query: 475 TADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGL 296
TADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE G+ KSLSE+G FGL
Sbjct: 477 TADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 536
Query: 295 SKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
SKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 537 SKERVRQLESRALYRLKQSLGGKASYGYADLLI 569
>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
isoform X1 [Citrus sinensis]
Length = 570
Score = 568 bits (1465), Expect = e-159
Identities = 298/513 (58%), Positives = 382/513 (74%), Gaps = 12/513 (2%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPLL + K D T Q T D R M E + D D+ V D +
Sbjct: 61 PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVEEKNSGDLDQLVQDLE 118
Query: 1522 LQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSACKEA 1367
Q L P+LW L +++ E QS S+ + + E VALAR+A SA KEA
Sbjct: 119 HQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 178
Query: 1366 ASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTKRR-VPKPKIEIQETN 1196
AS+A++ +L GA D S L P+ + VRST+ LER++K+R V KPK+ ET
Sbjct: 179 ASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETY 237
Query: 1195 HRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLE 1016
+ RK +K +EGFD NDPLR+FLWGPET +LLTA EE ELI +IQ+L++L++ +S+L+
Sbjct: 238 NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 297
Query: 1015 TQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQ 836
+QF REPTL+EWA+A G SC L+S++H GNSSR+KLI AN R+VVH+AKQYQGRG+ L
Sbjct: 298 SQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 357
Query: 835 DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSK 656
DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHSRTIRLPEN+Y+LLS+
Sbjct: 358 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSR 417
Query: 655 VYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEI 476
V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSMQQPVW DQ+TT+QEI
Sbjct: 418 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEI 477
Query: 475 TADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGL 296
TADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE G+ KSLSE+G FGL
Sbjct: 478 TADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 537
Query: 295 SKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
SKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 538 SKERVRQLESRALYRLKQSLGGKASYGYADLLI 570
>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 548
Score = 568 bits (1464), Expect = e-159
Identities = 309/510 (60%), Positives = 378/510 (74%), Gaps = 9/510 (1%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPLL + K D T+Q T+D +Q M PG S +EG +D
Sbjct: 59 PTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQ--MDPGTSDQEG--------ICSDVL 108
Query: 1522 LQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEADHVVALAREAFSACKEAASIAKDAR 1343
QL+ L S QS ++ + LM VE +V+ LAR+A SA KEAA +A+
Sbjct: 109 DQLILHSNL-----SWSLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQKC- 162
Query: 1342 LFGAHLDD-------PSSIRGLASVPVRRIVRSTRLLERQTK-RRVPKPKIEIQETNHRR 1187
A+LDD P+ + + V+ VRSTR LERQ+K RRV K K E R
Sbjct: 163 ---ANLDDTVSTGLEPTDLSNFSLEEVKT-VRSTRRLERQSKNRRVTKTKEIFHEPYSSR 218
Query: 1186 KPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQF 1007
+ +K NEGFDP DPLR+FLWGPET QLLTAKEESELI ++Q+LM L+ V+ + + QF
Sbjct: 219 RAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQF 278
Query: 1006 SREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLL 827
R+PTLVEWA+A G S V+QSQ+H GN SR+KLI AN RMVVHIAKQYQGRGLSLQDLL
Sbjct: 279 GRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLL 338
Query: 826 QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYE 647
QEGSMGLMKS+EKFKPQ GCRFATYAYWWIRQ++RKA+FQHSRTIRLPENVY L KV E
Sbjct: 339 QEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSE 398
Query: 646 AKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITAD 467
AK+S + +GNH PTKE++A G++ RLE+LLY AR+PLSMQQ VW DQ TT+QEITAD
Sbjct: 399 AKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITAD 458
Query: 466 TTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKE 287
+E+PE+ +KQ+MR+H +LL++LNPRERKIIRLR+GIE G++KSLSEIG+ FGLSKE
Sbjct: 459 IEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKE 518
Query: 286 RVRQLESRALYKLKQCLSSQGLEAYADMLI 197
RVRQLESRALYKLKQCL+S GLEAYAD+L+
Sbjct: 519 RVRQLESRALYKLKQCLASHGLEAYADLLV 548
>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
FACTOR family protein [Populus trichocarpa]
Length = 535
Score = 558 bits (1439), Expect = e-156
Identities = 299/503 (59%), Positives = 372/503 (73%), Gaps = 3/503 (0%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPL + K D Q TLD+R+ + G S EG + + D+ V +F+
Sbjct: 52 PTSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEI--GTSGHEGKDSDELDQLVENFE 109
Query: 1522 LQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEADHVVALAREAFSACKEAASIAKDAR 1343
QL P W L + L+ VE +V+ LA+ A SA K AA +A +
Sbjct: 110 YQLHHWPAYWNL--------------TDKLIDVEPTNVINLAKRALSASKHAAFLADN-- 153
Query: 1342 LFGAHLDDPSSIRGLA-SVPVRRIVRSTRLLERQT-KRRVPKPKIEIQETNHRRKPESHR 1169
LD+ +S + S+ +IVRS R L RQ+ RR PK K I ET + + +
Sbjct: 154 --NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQK 211
Query: 1168 KFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTL 989
+ ++GFDPNDPLR+FLWGPET QLLTAKEE ELI +IQ+LM L+ V++RLE+QF REPTL
Sbjct: 212 RLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTL 271
Query: 988 VEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMG 809
VEWA+A G SCHVL+ Q+H GN SR+KLI AN RMVVHIAK+YQ RGL LQDLLQEG++G
Sbjct: 272 VEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVG 331
Query: 808 LMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCV 629
LMKS+EKFKPQAGCRFATYAYWWIRQ+I KA+FQHSRTIRLPENVY LL KV EAK+S +
Sbjct: 332 LMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYI 391
Query: 628 QQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVP 449
Q+GNH PT E+IA G+++++LEKLL R PLSMQQ VW DQNTT+QEITADT IE+P
Sbjct: 392 QEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIP 451
Query: 448 EVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLE 269
++ +KQ+MR+H R LL++L+ +ER+IIRLRFGIE G+QKSLSEIG FGLSKERVRQLE
Sbjct: 452 DMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLE 511
Query: 268 SRALYKLKQCLSSQGLEAYADML 200
SRALYKLKQC+ S GL+AYAD+L
Sbjct: 512 SRALYKLKQCVGSHGLDAYADLL 534
>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 558 bits (1439), Expect = e-156
Identities = 299/503 (59%), Positives = 372/503 (73%), Gaps = 3/503 (0%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPL + K D Q TLD+R+ + G S EG + + D+ V +F+
Sbjct: 52 PTSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEI--GTSGHEGKDSDELDQLVENFE 109
Query: 1522 LQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEADHVVALAREAFSACKEAASIAKDAR 1343
QL P W L + L+ VE +V+ LA+ A SA K AA +A +
Sbjct: 110 YQLHHWPAYWNL--------------TDKLIDVEPTNVINLAKRALSASKHAAFLADN-- 153
Query: 1342 LFGAHLDDPSSIRGLA-SVPVRRIVRSTRLLERQT-KRRVPKPKIEIQETNHRRKPESHR 1169
LD+ +S + S+ +IVRS R L RQ+ RR PK K I ET + + +
Sbjct: 154 --NTDLDNLASTSSSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQK 211
Query: 1168 KFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPTL 989
+ ++GFDPNDPLR+FLWGPET QLLTAKEE ELI +IQ+LM L+ V++RLE+QF REPTL
Sbjct: 212 RLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTL 271
Query: 988 VEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSMG 809
VEWA+A G SCHVL+ Q+H GN SR+KLI AN RMVVHIAK+YQ RGL LQDLLQEG++G
Sbjct: 272 VEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVG 331
Query: 808 LMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSCV 629
LMKS+EKFKPQAGCRFATYAYWWIRQ+I KA+FQHSRTIRLPENVY LL KV EAK+S +
Sbjct: 332 LMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEAKRSYI 391
Query: 628 QQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEVP 449
Q+GNH PT E+IA G+++++LEKLL R PLSMQQ VW DQNTT+QEITADT IE+P
Sbjct: 392 QEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADTEIEIP 451
Query: 448 EVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQLE 269
++ +KQ+MR+H R LL++L+ +ER+IIRLRFGIE G+QKSLSEIG FGLSKERVRQLE
Sbjct: 452 DMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLE 511
Query: 268 SRALYKLKQCLSSQGLEAYADML 200
SRALYKLKQC+ S GL+AYAD+L
Sbjct: 512 SRALYKLKQCVGSHGLDAYADLL 534
>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
gi|557530789|gb|ESR41972.1| hypothetical protein
CICLE_v10011376mg [Citrus clementina]
Length = 561
Score = 556 bits (1433), Expect = e-155
Identities = 295/513 (57%), Positives = 377/513 (73%), Gaps = 12/513 (2%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPLL + K D T Q T D R M E + D D+ V D +
Sbjct: 52 PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVEEKNSGDLDQLVQDLE 109
Query: 1522 LQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSACKEA 1367
Q L P+LW L +++ E QS S+ + + E VALAR+A SA KEA
Sbjct: 110 HQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 169
Query: 1366 ASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTKRR-VPKPKIEIQETN 1196
AS+A++ +L GA D S L P+ + VRSTR LER++K+R V KPK+ ET
Sbjct: 170 ASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETY 228
Query: 1195 HRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLE 1016
+ RK +K +EGFDPNDPLR+FLWGPET +LLTA EE ELI +IQ+L++L++ +S+L+
Sbjct: 229 NSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 288
Query: 1015 TQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQ 836
+QF REPTL+ SC L+S++H GNSSR+KLI AN R+VVH+AKQYQGRG+ L
Sbjct: 289 SQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 348
Query: 835 DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSK 656
DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHSRTIRLPEN+Y+LLS+
Sbjct: 349 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSR 408
Query: 655 VYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEI 476
V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSMQQPVW DQ+TT+QEI
Sbjct: 409 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEI 468
Query: 475 TADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGL 296
TADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE G+ KSLSE+G FGL
Sbjct: 469 TADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 528
Query: 295 SKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
SKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 529 SKERVRQLESRALYRLKQSLGGKASYGYADLLI 561
>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
gi|557530788|gb|ESR41971.1| hypothetical protein
CICLE_v10011376mg [Citrus clementina]
Length = 569
Score = 556 bits (1433), Expect = e-155
Identities = 295/513 (57%), Positives = 377/513 (73%), Gaps = 12/513 (2%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPLL + K D T Q T D R M E + D D+ V D +
Sbjct: 60 PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVEEKNSGDLDQLVQDLE 117
Query: 1522 LQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSACKEA 1367
Q L P+LW L +++ E QS S+ + + E VALAR+A SA KEA
Sbjct: 118 HQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 177
Query: 1366 ASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTKRR-VPKPKIEIQETN 1196
AS+A++ +L GA D S L P+ + VRSTR LER++K+R V KPK+ ET
Sbjct: 178 ASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETY 236
Query: 1195 HRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLE 1016
+ RK +K +EGFDPNDPLR+FLWGPET +LLTA EE ELI +IQ+L++L++ +S+L+
Sbjct: 237 NSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 296
Query: 1015 TQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQ 836
+QF REPTL+ SC L+S++H GNSSR+KLI AN R+VVH+AKQYQGRG+ L
Sbjct: 297 SQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 356
Query: 835 DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSK 656
DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHSRTIRLPEN+Y+LLS+
Sbjct: 357 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSR 416
Query: 655 VYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEI 476
V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSMQQPVW DQ+TT+QEI
Sbjct: 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEI 476
Query: 475 TADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGL 296
TADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE G+ KSLSE+G FGL
Sbjct: 477 TADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 536
Query: 295 SKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
SKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 537 SKERVRQLESRALYRLKQSLGGKASYGYADLLI 569
>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
gi|557530787|gb|ESR41970.1| hypothetical protein
CICLE_v10011376mg [Citrus clementina]
Length = 558
Score = 556 bits (1433), Expect = e-155
Identities = 295/513 (57%), Positives = 377/513 (73%), Gaps = 12/513 (2%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
PTSVL+Q+QR+E RPLL + K D T Q T D R M E + D D+ V D +
Sbjct: 49 PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRN--METEAFFVEEKNSGDLDQLVQDLE 106
Query: 1522 LQLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSACKEA 1367
Q L P+LW L +++ E QS S+ + + E VALAR+A SA KEA
Sbjct: 107 HQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEA 166
Query: 1366 ASIAKDARLFGAHLDDPSSIRGLASVPVRRI--VRSTRLLERQTKRR-VPKPKIEIQETN 1196
AS+A++ +L GA D S L P+ + VRSTR LER++K+R V KPK+ ET
Sbjct: 167 ASLAENPKLNGAEFTDISLTSSLG-YPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETY 225
Query: 1195 HRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLE 1016
+ RK +K +EGFDPNDPLR+FLWGPET +LLTA EE ELI +IQ+L++L++ +S+L+
Sbjct: 226 NSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQ 285
Query: 1015 TQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQ 836
+QF REPTL+ SC L+S++H GNSSR+KLI AN R+VVH+AKQYQGRG+ L
Sbjct: 286 SQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLH 345
Query: 835 DLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSK 656
DLLQEGSMGLMKSVEKFKPQAGCRFA+YAYWW+RQ+IRKA+FQHSRTIRLPEN+Y+LLS+
Sbjct: 346 DLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSR 405
Query: 655 VYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEI 476
V EAK+ +Q+GNH P KED+A G++VE+LE+L++ R+PLSMQQPVW DQ+TT+QEI
Sbjct: 406 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEI 465
Query: 475 TADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGL 296
TADT +E+P++ KQ+MRQH RNLL++LNP+ER I+RLRFGIE G+ KSLSE+G FGL
Sbjct: 466 TADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGL 525
Query: 295 SKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
SKERVRQLESRALY+LKQ L + YAD+LI
Sbjct: 526 SKERVRQLESRALYRLKQSLGGKASYGYADLLI 558
>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Fragaria vesca subsp. vesca]
Length = 554
Score = 542 bits (1397), Expect = e-151
Identities = 296/509 (58%), Positives = 377/509 (74%), Gaps = 8/509 (1%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEY--VND 1529
PTSVL+Q+QR+E +PLL + K + Q TLD+ Q+ ++ E + N+D D Y V D
Sbjct: 57 PTSVLLQEQRDEFKPLLHIFKEEKASQATLDRIQIEN----TTAEEDFNID-DFYKLVKD 111
Query: 1528 FQLQLLRRPELWYLWASLQKEEQSFSSTSVNL-MGVEADHVVALAREAFSACKEAASIAK 1352
F+ QL P + + S+T+ N+ M VE V+ LA+ A SA EAAS+A+
Sbjct: 112 FR-QLHVTPS--QIGENSPTGSALESNTTANVHMDVEPSDVLTLAKHALSASLEAASLAE 168
Query: 1351 DARLFGAHLDDPSSIRGLASVPVRRIVRSTRLLERQTKR----RVPKPKIEIQETNHRRK 1184
++ A L++ +S+ GL VRST+LLER+ KR + K+ E +
Sbjct: 169 TSKSISAGLNESTSL-GLGWE--EETVRSTQLLERRRKRLKKRNLLNSKVPNYENSSSNS 225
Query: 1183 PESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFS 1004
+ RK+ EG +PNDPLR+FLWGPET QLLT KEE+ELI ++Q++ KL+ V+SRL++QF
Sbjct: 226 SDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRLQSQFG 285
Query: 1003 REPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQ 824
REPTL+EWAEA G SC +LQSQ+ CG SSR+KLIY+N RMVVHIAKQYQGRGL LQDLLQ
Sbjct: 286 REPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGLQDLLQ 345
Query: 823 EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEA 644
EGSMGLMKSVEKFKPQAGCRFATYAYWW+RQ+IRKA+FQHSRTIRLPENVY+LL KV EA
Sbjct: 346 EGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLGKVLEA 405
Query: 643 KKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADT 464
KKS +Q+GN P++E++A G+SVE+L KLLY R+P+SMQQ VW DQ+TT+QE+TADT
Sbjct: 406 KKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQEVTADT 465
Query: 463 TIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKER 284
IE+P++ +KQ+MRQH RNLL L RER+IIRLR+GIE G+Q+SL+EIG FGLSKER
Sbjct: 466 GIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGEIFGLSKER 525
Query: 283 VRQLESRALYKLKQCLSSQGLEAYADMLI 197
VRQLESRA KLK+ L SQGL AYA +L+
Sbjct: 526 VRQLESRAFLKLKESLGSQGLGAYAPLLV 554
>ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus] gi|449482444|ref|XP_004156283.1|
PREDICTED: RNA polymerase sigma factor sigF,
chloroplastic-like [Cucumis sativus]
Length = 562
Score = 538 bits (1387), Expect = e-150
Identities = 289/509 (56%), Positives = 375/509 (73%), Gaps = 10/509 (1%)
Frame = -2
Query: 1696 TSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQL 1520
TS L Q+Q +E RP LK D + Q TL++R L+ + EG+++ D D + + +
Sbjct: 58 TSFLSQEQHHECRPQSQILKDDRSSQMTLERR--LIERSVPIDEGSRD-DHDHLIWELKH 114
Query: 1519 QLLRRPELWYLWASLQKEE--------QSFSSTSVNLMGVEADHVVALAREAFSACKEAA 1364
Q + P L W +Q EE +S+++ L+ E ++V+ALA++A SA K+AA
Sbjct: 115 QAVEWPGLLSSWPPVQMEEYKISSIEKESYNAAGEMLVKDEPENVIALAKKALSASKQAA 174
Query: 1363 SIAKDARLFGAHLDDPSSIRGLASVPVRRIVRSTRLLERQTKRR-VPKPKIEIQETNHRR 1187
+ + L G LD S L+ R VRSTRL +R++K+R VPK I E ++ R
Sbjct: 175 LLVDETELVGTSLDYSSLDDSLSKEG--RTVRSTRLQDRRSKKRKVPKHVTTIDEISNFR 232
Query: 1186 KPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQF 1007
+S RK +E FDPNDPLR+FLWGPET +LLTA+EESELIV+IQ+LM L V++RL++QF
Sbjct: 233 GKDSRRKTSEKFDPNDPLRLFLWGPETKKLLTAQEESELIVQIQDLMILDNVKARLQSQF 292
Query: 1006 SREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLL 827
REPTLVEWAEA G +C LQSQ+H +SR+KLI AN RMVVHIAKQYQGRGLSL DLL
Sbjct: 293 DREPTLVEWAEALGITCQHLQSQLHVFQTSREKLINANLRMVVHIAKQYQGRGLSLHDLL 352
Query: 826 QEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYE 647
Q GS+GLMKSVEKFKPQAGCRF +YAYWWIR SI KA+FQHSRTIRLPENVY+LL KV E
Sbjct: 353 QVGSLGLMKSVEKFKPQAGCRFGSYAYWWIRHSITKAIFQHSRTIRLPENVYALLGKVTE 412
Query: 646 AKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITAD 467
AK V+ GN+ P+KE++AA G++VER +KL++ +R+P S+QQPVW DQ TT+QEITAD
Sbjct: 413 AKNYFVRAGNYKPSKEELAARVGITVERFDKLMFMSRIPRSLQQPVWADQETTFQEITAD 472
Query: 466 TTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKE 287
+ ++ P+V +++MR+H RNLLS+L+P+ER+IIRLRFGIE G +K+L EIG FGLSKE
Sbjct: 473 SEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRFGIEDGREKTLLEIGNMFGLSKE 532
Query: 286 RVRQLESRALYKLKQCLSSQGLEAYADML 200
RVRQLE+RALYKLK+C +SQGL AYAD+L
Sbjct: 533 RVRQLENRALYKLKRCCNSQGLGAYADLL 561
>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Glycine max]
Length = 575
Score = 533 bits (1373), Expect = e-149
Identities = 295/524 (56%), Positives = 378/524 (72%), Gaps = 23/524 (4%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
P SVL+ +QR+E RPLL + K D T Q L RQ+ ++ E N + D+ V DF+
Sbjct: 58 PASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQM---DTVTVHEENNTENADQVVLDFR 114
Query: 1522 LQLLRRPELWYLWASLQKEEQSFSST----SVNLM----GVEADHVVALAREAFSACKEA 1367
L P L YL S Q E + SST SV+L GV+ + V +LA++A S K+
Sbjct: 115 KHLHHWPNLQYLLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGV-SLAKKALSTSKQE 173
Query: 1366 ASIAKDARLFGAHLDDPSSIRGLASVPV-------RRIVRSTRLLERQTK-RRVPKPKIE 1211
+S+ +D + A DD S GLAS + + VRSTRLLER++K R+VPK K+
Sbjct: 174 SSVVEDLKSIKA--DDDSIPFGLASTSLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVI 231
Query: 1210 IQETNHRRKPESHRKF------NEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQEL 1049
ET RK ++ K NE D +DPLR+FLWGPET QLLT ++ES+LI +IQ+L
Sbjct: 232 DDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDL 291
Query: 1048 MKLQEVRSRLETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIA 869
++L+EV++ L++QF REPT+ EWAE AG +C +LQSQ+H GN SR+KLI AN RMVVH+A
Sbjct: 292 LRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVA 351
Query: 868 KQYQGRGLSLQDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIR 689
K YQGRGLSLQDLLQEGSMGLMKSVEKF P AG RF YA+WWIRQ+IRKA+F+HSRTIR
Sbjct: 352 KSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIR 411
Query: 688 LPENVYSLLSKVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPV 509
LPE V+ LL KV EAKK +Q+GN +PTKE++A G++VE+++KLL++AR+P+SMQQ V
Sbjct: 412 LPEKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTV 471
Query: 508 WMDQNTTYQEITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQK 329
W DQNTT+QEITAD T+E +V KQ+MR+H N+LSVL+P+ER+IIRLR+G E GEQK
Sbjct: 472 WADQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQK 531
Query: 328 SLSEIGAGFGLSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
SLSEIG FGLSKERVRQLE RALYKLK+CL QGL+AY D+L+
Sbjct: 532 SLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 575
>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 543
Score = 528 bits (1361), Expect = e-147
Identities = 287/514 (55%), Positives = 369/514 (71%), Gaps = 10/514 (1%)
Frame = -2
Query: 1708 RPPPTSVLIQDQRNESRPLLCL-KADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVN 1532
+P TSVL+Q+QR+E +PLL + K D T Q L++RQ G E D +++V
Sbjct: 50 QPFSTSVLLQEQRDEFKPLLRVNKEDKTSQGVLNRRQ--NDSGALVHEDTLE-DYNQFVW 106
Query: 1531 DFQLQLLRRPELWYLWASLQ-KEEQSFSSTSVNLMG-------VEADHVVALAREAFSAC 1376
+F+ + P W++ SL+ K + S S T MG VE +ALA++A A
Sbjct: 107 EFERPSVHWPGFWHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMAS 166
Query: 1375 KEAASIAKDARLFGAHLDDPSSIRGLASVPVRRIVRSTRLLERQTKRR-VPKPKIEIQET 1199
KEAAS+A++++L G DD S+ L + VRSTRLLER++KRR VP+ + E
Sbjct: 167 KEAASLAEESKLVGTDSDDMLSVSFLGKGD--KTVRSTRLLERRSKRRKVPESSVLFYEN 224
Query: 1198 NHRRKPESHRKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRL 1019
R + ++ +EG + +DPLR+FL GPET QLLT +EESELI ++Q+L+KL++V++RL
Sbjct: 225 PRNRAADIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARL 284
Query: 1018 ETQFSREPTLVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSL 839
+++F REPTLVEWAEA G SC +LQSQ+ G SSR+KLI AN R+VVHIAKQYQGRG+ +
Sbjct: 285 QSEFGREPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGI 344
Query: 838 QDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLS 659
QDL+QEGSMGLMKSVEKFKPQ GCRFA+YAYWWIRQ+ ENVY+LL
Sbjct: 345 QDLMQEGSMGLMKSVEKFKPQVGCRFASYAYWWIRQT---------------ENVYTLLG 389
Query: 658 KVYEAKKSCVQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQE 479
KV EAK+S +Q+GNH P+KED+A G++VE+L KLLY R+PLSMQQPVW DQ+TT+QE
Sbjct: 390 KVLEAKRSSIQEGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQE 449
Query: 478 ITADTTIEVPEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFG 299
+TADT IE+P+V +KQ+MRQH R LL LN RER+IIRLRFGIE G QKSLSEIG +G
Sbjct: 450 VTADTRIEIPDVSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIGRMYG 509
Query: 298 LSKERVRQLESRALYKLKQCLSSQGLEAYADMLI 197
LSKERVRQLESRALYKLKQCL SQ LEAYAD+++
Sbjct: 510 LSKERVRQLESRALYKLKQCLGSQDLEAYADLIV 543
>ref|XP_006293947.1| hypothetical protein CARUB_v10022939mg [Capsella rubella]
gi|482562655|gb|EOA26845.1| hypothetical protein
CARUB_v10022939mg [Capsella rubella]
Length = 547
Score = 526 bits (1355), Expect = e-146
Identities = 292/505 (57%), Positives = 363/505 (71%), Gaps = 4/505 (0%)
Frame = -2
Query: 1699 PTSVLIQDQRNESRPLL-CLKADSTYQQTLDKRQLLMAPGLSSREGNKNVDPDEYVNDFQ 1523
P SVL Q+ R ESRPL + D T Q TL++RQ +SSRE DE F+
Sbjct: 55 PASVLSQEPREESRPLSHAFREDRTSQLTLERRQFDEL--VSSRE-------DE---TFE 102
Query: 1522 LQLLRRPELWYLWASLQKEEQSFSSTSVNLMGVEADHVVALAREAFSACKEAASIAKDAR 1343
QL++ LW L S E+ + L E VVALA++A SA K+AA +A D
Sbjct: 103 QQLIQSAGLWNLLISPITAEKQLPAAVSPLADAELCDVVALAQKALSASKQAALLADDTE 162
Query: 1342 LFGA-HLDDPSSIRGLASVPVR-RIVRSTRLLERQTK-RRVPKPKIEIQETNHRRKPESH 1172
+ + D S S+P IVRS RLLER+ K RR PK E +K +
Sbjct: 163 ANPSDNSGDSLSTSSSMSLPEEGTIVRSKRLLERRAKNRRAPKSNDVDNEGYVPQKSNAK 222
Query: 1171 RKFNEGFDPNDPLRMFLWGPETTQLLTAKEESELIVKIQELMKLQEVRSRLETQFSREPT 992
+KF +G D +D L++FLWGPET QLLTAKEE+ELI IQ L+KL++V+++LE+Q EPT
Sbjct: 223 KKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPT 282
Query: 991 LVEWAEAAGTSCHVLQSQVHCGNSSRDKLIYANFRMVVHIAKQYQGRGLSLQDLLQEGSM 812
+ EWAEA G S VL+S++H G SSR+KLI AN R+VVHIAKQYQ RGL+ QDLLQEGSM
Sbjct: 283 IGEWAEAMGISSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSM 342
Query: 811 GLMKSVEKFKPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSKVYEAKKSC 632
GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK++FQ+SRTIRLPENVY LL KV EA+K+C
Sbjct: 343 GLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTC 402
Query: 631 VQQGNHYPTKEDIAACAGLSVERLEKLLYTARVPLSMQQPVWMDQNTTYQEITADTTIEV 452
VQ+GN+ P+KE +A G+S E+L+KLLY R PLSMQQP+W DQ+TT+QEIT D+ IE+
Sbjct: 403 VQEGNYRPSKEQLAGHVGVSKEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIEI 462
Query: 451 PEVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEGGEQKSLSEIGAGFGLSKERVRQL 272
P + KQ+MR H RNLL+VL+P+ER II+LRFGIEGG+Q+SLSEIG +GLSKERVRQL
Sbjct: 463 PTISVGKQLMRNHVRNLLNVLSPKERSIIKLRFGIEGGKQRSLSEIGEIYGLSKERVRQL 522
Query: 271 ESRALYKLKQCLSSQGLEAYADMLI 197
ESRALY+LKQ +SS GL AYAD+L+
Sbjct: 523 ESRALYRLKQNMSSHGLHAYADLLV 547