BLASTX nr result
ID: Rehmannia26_contig00006097
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00006097
(1592 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 599 e-169
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 576 e-161
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 563 e-157
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 538 e-150
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 538 e-150
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 536 e-149
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 533 e-148
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 524 e-146
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 514 e-143
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 514 e-143
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 513 e-143
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 513 e-142
ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutr... 509 e-141
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 505 e-140
ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Caps... 498 e-138
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 491 e-136
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 491 e-136
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 490 e-136
ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [A... 486 e-134
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 486 e-134
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 599 bits (1545), Expect = e-169
Identities = 306/531 (57%), Positives = 393/531 (74%), Gaps = 1/531 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFV+KD+++ K M +K AS +KCYFVR +S+ D G+Y+ S KRIS+ARC+
Sbjct: 300 RFFVYKDDKEKKKSPAMMKKKTAS---LKCYFVRFESIETCNDGGSYVFSTKRISQARCQ 356
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH++ VS + KY AR SLILSKTIKL+V+LA+ T+E IEDI +DENG II DEDG+P
Sbjct: 357 FMHVHMVSNMAKYAARLSLILSKTIKLQVNLASVTIERIEDILCRDENGCIIKDEDGEPR 416
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFE-IVNSGDAACQKRGAEARNKEPPLLMQ 1056
+HTDGTG+ISEDLAM CPKDF A+YI D ++E V+ D ++R + + N+EPPLLMQ
Sbjct: 417 IHTDGTGFISEDLAMHCPKDFVKAEYIKDENYENFVDIVDLDAERRESVSWNREPPLLMQ 476
Query: 1055 CRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRR 876
CRLF G AVKGT LVNRK+ I IRPSM+KVE D + TF+SLEIVAIS+RP +
Sbjct: 477 CRLFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSLEIVAISHRPNK 536
Query: 875 NYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAER 696
YLSK LI+LL+YGGV +E+F+ LL +AL ET+ VY +RAAL+V N+ +D + R
Sbjct: 537 AYLSKNLISLLSYGGVQKEYFMELLGSALEETKQVYLRKRAALKVVINYREMDDDCLTAR 596
Query: 695 MISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIIL 516
MIS+G+PLNEP+L+ LS L + E+TKL+ GK+PIS+SFYLMGTADPTGVL ++EVC+IL
Sbjct: 597 MISSGIPLNEPHLRARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVIL 656
Query: 515 DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 336
D G ISG+VLVYRNPG+HFGDVH+MKA YV+E+ +VVG+AKYGIFFSTKG RSAA E+A
Sbjct: 657 DNGQISGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIAN 716
Query: 335 GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXX 156
GDFDGDMYW+S N +++ + + PW+R++S P + + P EFS
Sbjct: 717 GDFDGDMYWVSINRKVVDSYTTSRPWSRMHSTPKAVSKKPSEFSADKLEYELFRQFLEAK 776
Query: 155 RPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
+M+ AA+SWL FMDRLL L DD E + LKGK++ LIDIYYDALDA
Sbjct: 777 SKGANMSVAADSWLAFMDRLLMLRDDNVDEMHSLKGKMLHLIDIYYDALDA 827
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 576 bits (1484), Expect = e-161
Identities = 298/531 (56%), Positives = 384/531 (72%), Gaps = 4/531 (0%)
Frame = -1
Query: 1583 VFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCRFMH 1404
V+KD+++ K M K AS +KCYFVR +S+ D +Y+ S K IS+ARC+FMH
Sbjct: 303 VYKDDKERKKSPAMMKTKTAS---LKCYFVRFESIGTCNDGESYVFSTKTISQARCKFMH 359
Query: 1403 IYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPILHT 1224
++ VS + KY AR SLILSKTIKL+ DL + T+E IEDI +DENG II DEDG+P +HT
Sbjct: 360 VHMVSNMAKYAARLSLILSKTIKLQTDLDSVTIERIEDILCRDENGCIIQDEDGEPRIHT 419
Query: 1223 DGTGYISEDLAMKCPKDFSAAKYITDNSFE----IVNSGDAACQKRGAEARNKEPPLLMQ 1056
DGTG+ISEDLAM CPKDFS A+YI D ++E IV+ D ++R + +RN++P
Sbjct: 420 DGTGFISEDLAMHCPKDFSKAEYIKDENYENFVDIVDLDDVNVERRVSVSRNRKP----- 474
Query: 1055 CRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRR 876
CRLF G AVKGT LVNRK+ I IRPSM+KVE D + TF+SLEIVAIS+RP +
Sbjct: 475 CRLFFNGCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPTISSIPTFDSLEIVAISHRPNK 534
Query: 875 NYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAER 696
YLSK LI+LL+YGGV +E+F+ LL +AL ET+ VY +RAAL+VA N+ +D + R
Sbjct: 535 AYLSKNLISLLSYGGVHKEYFMELLGSALEETKQVYLRKRAALKVAINYREMDDECLTAR 594
Query: 695 MISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIIL 516
MIS+G+PLNEP+L LS L + E+TKL+ GK+PIS+SFYLMGTADPTGVL ++EVC+IL
Sbjct: 595 MISSGIPLNEPHLHARLSRLAKIERTKLRGGKLPISDSFYLMGTADPTGVLESNEVCVIL 654
Query: 515 DIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMAT 336
D G +SG+VLVYRNPG+HFGDVH+MKA YV+E+ +VVG+AKYGIFFSTKG RSAA E+A
Sbjct: 655 DNGQVSGRVLVYRNPGLHFGDVHVMKARYVEELADVVGDAKYGIFFSTKGPRSAATEIAN 714
Query: 335 GDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXX 156
GDFDGDMYW+S N +L+ + + PW R++S P++ + P EFS
Sbjct: 715 GDFDGDMYWVSINRKLVDSYTTSRPWIRMHSTPNAVSKKPSEFSADELEYELFRQFLEAK 774
Query: 155 RPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
+M+ AA+SWL FMDRLLTL DD + + LKGK++ LIDIYYDALDA
Sbjct: 775 SKGANMSLAADSWLAFMDRLLTLRDDNVDDMHSLKGKMLHLIDIYYDALDA 825
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 563 bits (1450), Expect = e-157
Identities = 292/536 (54%), Positives = 375/536 (69%), Gaps = 6/536 (1%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFV+KD+ G K++ + E+K +VKCYFVR++S+ PY + YIL K + EARC
Sbjct: 383 RFFVYKDD--GKKRSSKDKEEKID--SVKCYFVRMESLNPYEKE-TYILRDKMVHEARCN 437
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH++ VS++ KYMARFSL LS T+KL+VDL + ++ IEDI D++G II+DEDGKP+
Sbjct: 438 FMHVHMVSSMAKYMARFSLTLSTTVKLQVDLNSVNIDRIEDICCHDKSGRIIYDEDGKPL 497
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNS---GDAACQKRGAEARNKEPPLL 1062
+HTDGTGYISEDLA KCP+DF K+ N N G+ + + AE ++ EPPLL
Sbjct: 498 IHTDGTGYISEDLARKCPQDFFNVKHRCANLERYTNGVKLGENSSELGEAEFQSGEPPLL 557
Query: 1061 MQCRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRP 882
MQCRLF+ G AVKGTLLVNRKL TIQIRPSMIKVE D ++ + + FNSLEI S +P
Sbjct: 558 MQCRLFYNGLAVKGTLLVNRKLPRRTIQIRPSMIKVEADPRLSRAQMFNSLEINTPSLKP 617
Query: 881 RRNYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVA 702
R YLS+ LIALL YGGVP E+F ++L N L ET+ +YS+ AL+VA NH D A A
Sbjct: 618 RNTYLSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAVNHRDRDDASTA 677
Query: 701 ERMISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCI 522
MI AGVPL EPYL CLS+L + E+ LK G++PI+++FYLMGTADPT LN EVC+
Sbjct: 678 TSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGTADPTDTLNPHEVCV 737
Query: 521 ILDIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEM 342
IL+ G I G+VLVYRNPG+HFGD+H + AV VK + ++VGNAKYGIFFSTKG RSAA E+
Sbjct: 738 ILEHGQIFGEVLVYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFSTKGPRSAATEI 797
Query: 341 ATGDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXX 162
A GDFDGD YW+S+N +LLKYF A+ PW+R++S P + R P FS
Sbjct: 798 ANGDFDGDKYWVSQNPQLLKYFTASRPWSRIHSTPKTLHREPNNFSAEEREHDLFQTFLE 857
Query: 161 XXRPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKG---KIIQLIDIYYDALDA 3
P++ MA A+ +W MDRLL LG + TE +K K+ +LID+YYDA+DA
Sbjct: 858 TRMPNYSMADASANWYALMDRLLILGKNNTTENEEIKSVKEKLFELIDLYYDAIDA 913
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 538 bits (1387), Expect = e-150
Identities = 289/531 (54%), Positives = 369/531 (69%), Gaps = 1/531 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFVFKD K KK K + S VKC+FVR++SV + N ILSGK I +AR
Sbjct: 169 RFFVFKDGGKEEKK------KDPTTSPVKCFFVRMESVASIDNQDN-ILSGKTIRQARSV 221
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH+ N+S++ YMARFSLILSKT+ LEVDL+ ++TI D P +D++G++++ DGKP+
Sbjct: 222 FMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPL 281
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+HTDGTG+IS DLA+KCPK+ + ++ E +N + ++ E RN +PPLL+Q
Sbjct: 282 IHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQY-PECRNGDPPLLIQF 340
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
RLF+ G AVKGT LVN+KL T+ IRPSMIKVE D K+ + NSLEIV S+RP++
Sbjct: 341 RLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKT 400
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
+LSK LIALL+YGGVP+EFF+ ++ NAL + + SN+ AALRVA N+ +D VA M
Sbjct: 401 FLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVAT-M 459
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I G+PL EPYLQ LS L + EK LK GKIP+ ES+YLMGTADPTG+L +DEVCIILD
Sbjct: 460 IGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILD 519
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G ISG+VL+YRNPG+HFGD+HI+KA YV+E+E+ VGNAKY IFF KG RS A EM+ G
Sbjct: 520 CGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGG 579
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXX 156
DFDGDM+++SRN +LL+ FK EPW S P+ R P EFSD
Sbjct: 580 DFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRF 639
Query: 155 RPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
+PS + AA+SWL MDRLLTLG+D A E +K I LIDIYYDALDA
Sbjct: 640 QPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDA 690
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 538 bits (1387), Expect = e-150
Identities = 289/531 (54%), Positives = 369/531 (69%), Gaps = 1/531 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFVFKD K KK K + S VKC+FVR++SV + N ILSGK I +AR
Sbjct: 191 RFFVFKDGGKEEKK------KDPTTSPVKCFFVRMESVASIDNQDN-ILSGKTIRQARSV 243
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH+ N+S++ YMARFSLILSKT+ LEVDL+ ++TI D P +D++G++++ DGKP+
Sbjct: 244 FMHVDNLSSLSNYMARFSLILSKTMNLEVDLSCVDIKTIADEPCRDKDGNVVYGTDGKPL 303
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+HTDGTG+IS DLA+KCPK+ + ++ E +N + ++ E RN +PPLL+Q
Sbjct: 304 IHTDGTGFISHDLALKCPKNQFKGTCLRASNIERLNVHNEVMEQY-PECRNGDPPLLIQF 362
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
RLF+ G AVKGT LVN+KL T+ IRPSMIKVE D K+ + NSLEIV S+RP++
Sbjct: 363 RLFNNGRAVKGTFLVNKKLTHQTLHIRPSMIKVETDPKLSSTFSKNSLEIVGTSSRPKKT 422
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
+LSK LIALL+YGGVP+EFF+ ++ NAL + + SN+ AALRVA N+ +D VA M
Sbjct: 423 FLSKNLIALLSYGGVPEEFFMGIVNNALEDAHGILSNKNAALRVALNYGDMDDNIVAT-M 481
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I G+PL EPYLQ LS L + EK LK GKIP+ ES+YLMGTADPTG+L +DEVCIILD
Sbjct: 482 IGCGIPLEEPYLQCRLSILMKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILD 541
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G ISG+VL+YRNPG+HFGD+HI+KA YV+E+E+ VGNAKY IFF KG RS A EM+ G
Sbjct: 542 CGQISGEVLIYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGG 601
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXX 156
DFDGDM+++SRN +LL+ FK EPW S P+ R P EFSD
Sbjct: 602 DFDGDMFFVSRNPQLLETFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRF 661
Query: 155 RPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
+PS + AA+SWL MDRLLTLG+D A E +K I LIDIYYDALDA
Sbjct: 662 QPSSTVGVAADSWLAMMDRLLTLGNDCAEEIVCMKENINLLIDIYYDALDA 712
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 536 bits (1381), Expect = e-149
Identities = 280/531 (52%), Positives = 368/531 (69%), Gaps = 1/531 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFVFKD K E +KK S+VKCYFV ++S LSGK + EARC
Sbjct: 259 RFFVFKDGGK-------EEKKKNPTSSVKCYFVFMESSA---------LSGKTVHEARCI 302
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH + VS++ KYMARFSLILSKT+KL+VDL+ ++ I+D P +DE+G +++DED KP+
Sbjct: 303 FMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPL 362
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+ TDGTG+ISEDLA++CP + KY+ + + ++ +S PLL+QC
Sbjct: 363 ILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDVCDS---------------RYPLLIQC 407
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
RLF+ G AVKGTLL+NRKL P TIQIRPSMIKVE D K+ +T NS+EI SN+PRR+
Sbjct: 408 RLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRS 467
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
YLSKYLIALL+YGGVP E+F+NLL +AL + +V S++RAALRV+ +D + V RM
Sbjct: 468 YLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVT-RM 526
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I +G+P++EP+L CLS + E+ L+ GK+P+++ FYLMGTADPTG L +DEVCIILD
Sbjct: 527 ILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILD 586
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G + G+VLVY++PG+HFGD+H++ A YV+ +EE VGNAKY IFF KG RS A EMA
Sbjct: 587 HGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANS 646
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXX 156
DFDGDMYW+SRN +LL+YF+A+EPW R S + P +FS D
Sbjct: 647 DFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRF 706
Query: 155 RPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
+ S + AA++WL FMDRLLTL DD + EK LK K+++L DIYYDALDA
Sbjct: 707 QTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDA 757
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 533 bits (1372), Expect = e-148
Identities = 281/531 (52%), Positives = 367/531 (69%), Gaps = 1/531 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFVFKD K E +KK S+VKCYFV ++S LSGK + EARC
Sbjct: 251 RFFVFKDGGK-------EEKKKNPTSSVKCYFVFMESSA---------LSGKTVHEARCI 294
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH + VS++ KYMARFSLILSKT+KL+VDL+ ++ I+D P +DE+G +++DED KP+
Sbjct: 295 FMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPL 354
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+ TDGTG+ISEDLA++CP + KY+ N+G++ PLL+QC
Sbjct: 355 ILTDGTGFISEDLALRCPNNLCRGKYM--------NNGNS-------------DPLLIQC 393
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
RLF+ G AVKGTLL+NRKL P TIQIRPSMIKVE D K+ +T NS+EI SN+PRR+
Sbjct: 394 RLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRS 453
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
YLSKYLIALL+YGGVP E+F+NLL +AL + +V S++RAALRV+ +D + V RM
Sbjct: 454 YLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDDSIVT-RM 512
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I +G+P++EP+L CLS + E+ L+ GK+P+++ FYLMGTADPTG L +DEVCIILD
Sbjct: 513 ILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILD 572
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G + G+VLVY++PG+HFGD+H++ A YV+ +EE VGNAKY IFF KG RS A EMA
Sbjct: 573 HGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANS 632
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXXXXX 156
DFDGDMYW+SRN +LL+YF+A+EPW R S + P +FS D
Sbjct: 633 DFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRF 692
Query: 155 RPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
+ S + AA++WL FMDRLLTL DD + EK LK K+++L DIYYDALDA
Sbjct: 693 QTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDA 743
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 524 bits (1350), Expect = e-146
Identities = 283/531 (53%), Positives = 363/531 (68%), Gaps = 1/531 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFVFKD K KK K + S VKC+FV ++SV + N IL GK I +AR
Sbjct: 169 RFFVFKDGGKEEKK------KDPTTSPVKCFFVCMESVASVDNQDN-ILCGKTIRQARSV 221
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH+ N+S++ YMARFSLILSKT+ LEVDL+ ++ I D P +D++G+ ++ DGKP+
Sbjct: 222 FMHVDNLSSLSNYMARFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPL 281
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+HTDGTG+IS DLA+KCPK+ + ++ E + + ++ E + +PPLL+Q
Sbjct: 282 IHTDGTGFISHDLALKCPKNQVKGTCLQASNIERLRVHNEVMEQN-PECLHGDPPLLIQF 340
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
RLF+ G AVKGT LVN+KL T+ +RPSMIKVE D K+ + NSLEIV S RP++
Sbjct: 341 RLFNNGRAVKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKT 400
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
+LSK LIALL+YGGVP+EFF+ +L NAL + + SN++AALRVA N+ +D VA M
Sbjct: 401 FLSKNLIALLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVAT-M 459
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I G+PL EPYLQ LS L++ EK LK GKIP+ ES+YLMGTADPTG+L +DEVCIILD
Sbjct: 460 IGCGIPLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILD 519
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G +SG+VLVYRNPG+HFGD+HI+KA YV+E+E+ VGNAKY IFF KG RS A EM+ G
Sbjct: 520 CGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGG 579
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSD-VXXXXXXXXXXXXXX 156
DFDGDM+++SRN LL+ FK EPW S P+ R P EFSD
Sbjct: 580 DFDGDMFFVSRNPRLLENFKQTEPWTPSTSTPNVPNRKPSEFSDEELEVELFKLFLRNRF 639
Query: 155 RPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
+PSF + AA+SWL MDRLLTLG+D E +K I LIDIYYDALDA
Sbjct: 640 QPSFTVGVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDA 690
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 514 bits (1324), Expect = e-143
Identities = 282/539 (52%), Positives = 366/539 (67%), Gaps = 10/539 (1%)
Frame = -1
Query: 1589 FFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCRF 1410
FFVFKD K KK K S S VKCYFVR++S YILSGK + EAR F
Sbjct: 299 FFVFKDGGKEEKK------KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMF 352
Query: 1409 MHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPIL 1230
MH+ VS++ YM+R SLILSKT+KLEVD + +E IED P +D++G++++ +DG+ ++
Sbjct: 353 MHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALI 411
Query: 1229 HTDGTGYISEDLAMKCPKDFSAAKYITDNSFEI--------VNSGDAACQKRGAEARNKE 1074
HTDGTG+ISEDLA+KCP K D+S E N D A E+ E
Sbjct: 412 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVA----RTESHYGE 467
Query: 1073 PPLLMQCRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAI 894
PPLLMQ RLF+ G AVKGTLL+N+KL P TIQIRPSMIKV+ D + +TFNSLE+V
Sbjct: 468 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 527
Query: 893 SNRPRRNYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDF 714
SN+PR+ YLS+ LIALL+YGGVP+ FFL++L NAL + R V+SN+R AL+V+ N+ G+D+
Sbjct: 528 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY 587
Query: 713 AFVAERMISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNND 534
F + RMI +G+ L+EPYLQ LS L + EK L+ GK+P++ES+YLMGT DPTG+L ++
Sbjct: 588 DFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSN 647
Query: 533 EVCIILDIGPIS-GKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRS 357
EVCIIL G +S KVLVYRNPG+HFGD+H++KA YVKE+E+ VG +KY IFF G RS
Sbjct: 648 EVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRS 707
Query: 356 AAYEMATGDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXX 180
A E+A GDFDGDMY++SRN ELLK+FK +E W + KR P +FS +
Sbjct: 708 LADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR-PIDFSLEELESELF 766
Query: 179 XXXXXXXXRPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
PS + AA+ W MDR LTLGD+ A EK +K +++LI+IYYDALDA
Sbjct: 767 KLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDA 825
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 514 bits (1324), Expect = e-143
Identities = 282/539 (52%), Positives = 366/539 (67%), Gaps = 10/539 (1%)
Frame = -1
Query: 1589 FFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCRF 1410
FFVFKD K KK K S S VKCYFVR++S YILSGK + EAR F
Sbjct: 301 FFVFKDGGKEEKK------KDPSTSPVKCYFVRMESSAFIDMGYQYILSGKTVHEARYMF 354
Query: 1409 MHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPIL 1230
MH+ VS++ YM+R SLILSKT+KLEVD + +E IED P +D++G++++ +DG+ ++
Sbjct: 355 MHVRTVSSVANYMSRLSLILSKTMKLEVDFSRINIERIEDEPCRDKDGNVVY-KDGEALI 413
Query: 1229 HTDGTGYISEDLAMKCPKDFSAAKYITDNSFEI--------VNSGDAACQKRGAEARNKE 1074
HTDGTG+ISEDLA+KCP K D+S E N D A E+ E
Sbjct: 414 HTDGTGFISEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVA----RTESHYGE 469
Query: 1073 PPLLMQCRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAI 894
PPLLMQ RLF+ G AVKGTLL+N+KL P TIQIRPSMIKV+ D + +TFNSLE+V
Sbjct: 470 PPLLMQVRLFYNGTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVVKT 529
Query: 893 SNRPRRNYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDF 714
SN+PR+ YLS+ LIALL+YGGVP+ FFL++L NAL + R V+SN+R AL+V+ N+ G+D+
Sbjct: 530 SNQPRKTYLSRNLIALLSYGGVPEIFFLDILRNALDDARGVFSNKRNALKVSFNYGGMDY 589
Query: 713 AFVAERMISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNND 534
F + RMI +G+ L+EPYLQ LS L + EK L+ GK+P++ES+YLMGT DPTG+L ++
Sbjct: 590 DFTSARMILSGISLDEPYLQHRLSILMKEEKKSLQAGKLPVTESYYLMGTVDPTGILKSN 649
Query: 533 EVCIILDIGPIS-GKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRS 357
EVCIIL G +S KVLVYRNPG+HFGD+H++KA YVKE+E+ VG +KY IFF G RS
Sbjct: 650 EVCIILKDGQVSWEKVLVYRNPGLHFGDIHVLKATYVKELEDFVGTSKYAIFFPCNGPRS 709
Query: 356 AAYEMATGDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXX 180
A E+A GDFDGDMY++SRN ELLK+FK +E W + KR P +FS +
Sbjct: 710 LADEIAGGDFDGDMYFVSRNPELLKHFKESERWMSTSKNLSANKR-PIDFSLEELESELF 768
Query: 179 XXXXXXXXRPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
PS + AA+ W MDR LTLGD+ A EK +K +++LI+IYYDALDA
Sbjct: 769 KLFLNTRFCPSNAKSLAADCWQAVMDRFLTLGDESAEEKAAMKENMLRLINIYYDALDA 827
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 513 bits (1321), Expect = e-143
Identities = 271/534 (50%), Positives = 357/534 (66%), Gaps = 4/534 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
+FFVFKD K KK + +K VKCYF+R DS + YI +GK I EAR
Sbjct: 287 QFFVFKDGGKEEKKKDLSTKK------VKCYFIRTDSTASCDMENPYIFTGKSIHEARMH 340
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH++ T+ YMARFSLILSKT LEVD+ T + I+DI D++G + D++ KP
Sbjct: 341 FMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPC 400
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+H+DGTGYISEDLA CP + K + + + EA N++PPLL+Q
Sbjct: 401 IHSDGTGYISEDLARMCPLNIFKGKCLRSENIQ--------------EACNQDPPLLIQF 446
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
R+F+ GYAVKGT L+N+KL P T+Q+RPSMIKV +D + TFN+LE+V SN PRR
Sbjct: 447 RMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRT 506
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
LSK L+ALL+YGG+P EFFL++L+N L E+++++ N+ AAL VA N+ +D A+ M
Sbjct: 507 KLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQ-M 565
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I G+PL+EP+L+ LS L + EK LK G++P++ES+YLMGT DPTG L DEVC+IL+
Sbjct: 566 ILVGIPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILE 625
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G ISG+VLVYRNPG+HFGD+HI+KA YVK +EE VGN+KY +FF KG RS E+A G
Sbjct: 626 SGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGG 685
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXR 153
DFDGDMY+ISRN ELL++FK +EPW V P SK + + S + +
Sbjct: 686 DFDGDMYFISRNPELLEHFKPSEPW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLK 743
Query: 152 PSFD----MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
F + AA+SWLT MDRLL LGD+RA EK +K K+++LIDIYYDALDA
Sbjct: 744 AGFHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDA 797
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 513 bits (1320), Expect = e-142
Identities = 272/534 (50%), Positives = 354/534 (66%), Gaps = 4/534 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
+FFVFKD K KK + +K VKCYF+R DS Y YIL+GK I EAR
Sbjct: 283 QFFVFKDGGKEEKKKDLSTKK------VKCYFIRTDSTAFYDMQNPYILTGKSIYEARMH 336
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH++ T+ YMARFSLILSKT LEVD+ T + I+DI D++G + D++ KP
Sbjct: 337 FMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPC 396
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+H+DGTGYISEDLA CP + K + S + EA ++PPLL+Q
Sbjct: 397 IHSDGTGYISEDLARMCPLNIFKGKCLRSESIQ--------------EACYQDPPLLIQF 442
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
R+F+ GYAVKGT L+N+KL P T+Q+RPSMIKV +D + TFN+LE+V SN P+R
Sbjct: 443 RMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRT 502
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
LSK L+ALL+YGG+P EFFL++L+N L E+++++ N+RAAL A N+ +D A+ M
Sbjct: 503 KLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQ-M 561
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I G+PL+EP+L+ LS L + EK LK GK+P++ES+YLMGT DPTG L DEVC+IL+
Sbjct: 562 ILVGIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILE 621
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G ISG+VLVYRNPG+HFGD+HI+KA YVK +EE VGN+K+ +FF KG RS E+A G
Sbjct: 622 SGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGG 681
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFSDVXXXXXXXXXXXXXXR 153
DFDGDMY+ISRN ELL+ FK +EPW V P SK + + S +
Sbjct: 682 DFDGDMYFISRNPELLENFKPSEPW--VSLTPPSKSNSGRAPSQLSPEELEEELFEMFLT 739
Query: 152 PSFD----MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
F + AA+SWLT MDR L LGDDRA EK +K K+++LIDIYYDALDA
Sbjct: 740 AGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDA 793
>ref|XP_006408908.1| hypothetical protein EUTSA_v10001897mg [Eutrema salsugineum]
gi|557110064|gb|ESQ50361.1| hypothetical protein
EUTSA_v10001897mg [Eutrema salsugineum]
Length = 988
Score = 509 bits (1311), Expect = e-141
Identities = 272/534 (50%), Positives = 357/534 (66%), Gaps = 4/534 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
+FFVFKD K KK K S + VKCYF+R DS YI SGK I+EAR
Sbjct: 295 QFFVFKDVGKAEKK------KDFSTNGVKCYFIRTDSTAANDMGKAYIFSGKTINEARMH 348
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH++ + ++ KYMARFSLILSKT KLEVD+ T + I++I D+N +++ D++ +P
Sbjct: 349 FMHVHTLPSLAKYMARFSLILSKTKKLEVDMTGITYQEIKEIHCHDQNNNVVLDKNKEPR 408
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+H+DGTGYISEDLA CP + K ++ + + E+ ++PPLL+Q
Sbjct: 409 MHSDGTGYISEDLARMCPVNIFKGKCLSKKNIQ--------------ESCGQDPPLLIQF 454
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
R+F+ G AVKGT L+N+KL T+Q+RPSMIKV +D + TFNSLE+V SN P+R
Sbjct: 455 RMFYDGNAVKGTFLLNKKLPDRTVQVRPSMIKVSKDRALSNFSTFNSLEVVTTSNPPKRT 514
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
LS+ L+ALL+YGGVP EFFL+LL+N + ET+ +++N+RAAL+ A NH +D A+ M
Sbjct: 515 KLSRNLVALLSYGGVPNEFFLDLLLNTMEETKTIFNNKRAALKAALNHGDMDDQNAAQ-M 573
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I G+PL+EP+L+ LS L EK LK G++P++ES+YLMGT DPTG L DEVC+IL+
Sbjct: 574 ILVGIPLDEPHLKDRLSILSNIEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILE 633
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G ISG VLVYRNPG+HFGD+H++KA YVK +EE VGN+KY +FF KG RS E+A G
Sbjct: 634 SGQISGDVLVYRNPGVHFGDIHVLKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGG 693
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKK---RNPQEFSDVXXXXXXXXXXXX 162
DFDGDMY+ISRN ELL+ FK +EPW V P SK R P +FS
Sbjct: 694 DFDGDMYFISRNPELLEQFKPSEPW--VSLSPPSKSNSTRKPIDFSPEELEEELFDMFLK 751
Query: 161 XXRPSFD-MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
S + + AA+SWLT MDR LTLGD+RA EK +K K++ LIDIYYDALDA
Sbjct: 752 ARFHSSNVIGMAADSWLTIMDRFLTLGDERAEEKAEMKRKMLSLIDIYYDALDA 805
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 505 bits (1301), Expect = e-140
Identities = 279/540 (51%), Positives = 366/540 (67%), Gaps = 11/540 (2%)
Frame = -1
Query: 1589 FFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCRF 1410
FFVFKD K KK K + SAVKCYFVR++S Y LS + + EAR F
Sbjct: 342 FFVFKDGGKEEKK------KNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLF 395
Query: 1409 MHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPIL 1230
MH + VS+I YMARFSLILSKTI L++DL+ V+ I DIP +D G++I+ DGKP++
Sbjct: 396 MHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDIYGNVIY-RDGKPLI 454
Query: 1229 HTDGTGYISEDLAMKCPKDF--SAAKYITD--------NSFEIVNSGDAACQKRGAEARN 1080
HTDGTG+ISEDLA++CP + AK+ D +FE + G E R
Sbjct: 455 HTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELR- 513
Query: 1079 KEPPLLMQCRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIV 900
EPPLL+Q RLF+ G AVKGT L+N++L P TIQIR SMIKVE D + ET NSLE+V
Sbjct: 514 -EPPLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELV 572
Query: 899 AISNRPRRNYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGL 720
SN P+R +LS+ LIALLNYGGVP+E+F+N+L++AL + + V+S++RAALRV+ N+ +
Sbjct: 573 GTSNPPKRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSSKRAALRVSINNGEM 632
Query: 719 DFAFVAERMISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLN 540
D F+ RMI AG+PL+E YLQ LS L + EK LK G++ + E +YLMGT DPT L
Sbjct: 633 D-DFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLE 691
Query: 539 NDEVCIILDIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWR 360
+ EVC+IL G I+GKVLVYRNPG+HFGD+H++ A YV+++ VVGNAKY IFFS+KG R
Sbjct: 692 SGEVCVILYNGQINGKVLVYRNPGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPR 751
Query: 359 SAAYEMATGDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXX 183
S A E+A GDFDGDMYW+SRNS+LL+YF+ EPW S + P+EFS D
Sbjct: 752 SVADEIAGGDFDGDMYWVSRNSQLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENEL 811
Query: 182 XXXXXXXXXRPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
+PS+ + AA++WL MD+ L LG++R E+N ++ KI+QLI+IYYDALDA
Sbjct: 812 FKLFLSTRFQPSYAKSVAADNWLALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDA 871
>ref|XP_006296906.1| hypothetical protein CARUB_v10012898mg [Capsella rubella]
gi|482565615|gb|EOA29804.1| hypothetical protein
CARUB_v10012898mg [Capsella rubella]
Length = 982
Score = 498 bits (1281), Expect = e-138
Identities = 268/534 (50%), Positives = 356/534 (66%), Gaps = 4/534 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
+FFVFKD K KNK + K+A KCYF+R DS + YI SGK I EAR
Sbjct: 291 KFFVFKDGGKD-DKNKDVSTKRA-----KCYFIRTDSTASIDMEKPYIFSGKSIHEARMH 344
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH++ + ++ YMARFSLILSKT KLEVDL E I+DIP D++G + D++ KP
Sbjct: 345 FMHVHTLPSLANYMARFSLILSKTKKLEVDLTGVNFEIIKDIPCHDQDGKDVLDKNKKPR 404
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+H+DGTGYISEDLA CP + K + + + EA +EPPLL+Q
Sbjct: 405 IHSDGTGYISEDLAQMCPVNIYKGKCLRSDKIK--------------EACGQEPPLLIQF 450
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
R+F+ GYA+KGT L+N+K+ T+Q+RPSMIKV D +P TFN+LE+V S P+R
Sbjct: 451 RMFYNGYAIKGTFLLNKKIPSRTVQVRPSMIKVLPDS-LPNISTFNTLEVVNTSFPPKRT 509
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
LS+ L+ALL+YGG+P EFFL++L N L E++ ++ N+RAAL A ++ +D A+ M
Sbjct: 510 KLSRNLVALLSYGGIPDEFFLDILHNTLEESKAIFYNKRAALNAALSYGEMDDQNAAQ-M 568
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I AG+PL+EP+L+ CLS+ + EK LK G++P++ES+YLMGT DPTG L DEVC+IL+
Sbjct: 569 ILAGIPLDEPHLKTCLSSFLKREKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILE 628
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G ISG+VLVYRNPG+HFGD+H++KA YVK +EE VGN+K+ +FF KG RS E+A G
Sbjct: 629 SGQISGEVLVYRNPGLHFGDIHVLKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGG 688
Query: 332 DFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKK---RNPQEFS-DVXXXXXXXXXXX 165
DFDGD+Y+ISRN ELL++FK +EPW V P SK R P +FS +
Sbjct: 689 DFDGDIYFISRNPELLEHFKPSEPW--VSLTPPSKSNSARGPCQFSPEELEEELFEMFLK 746
Query: 164 XXXRPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
S + AA+SWLT MDR L LGD+ A EK +K K+++LIDIYYDALDA
Sbjct: 747 AGFHASNVIGMAADSWLTIMDRFLILGDESADEKAEMKQKMLELIDIYYDALDA 800
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 491 bits (1263), Expect = e-136
Identities = 265/532 (49%), Positives = 343/532 (64%), Gaps = 2/532 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
+FFVFKD E +K + S VKCYF+ + S +Y S ++I E RC
Sbjct: 109 QFFVFKDG------GNKEKKKNPTSSPVKCYFICVGSNAAIDRSEDYKFSNRKIHETRCI 162
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH + VS++ YMARFSLILSKT LEVD + VE I+D DE+G+ I D DGKP+
Sbjct: 163 FMHAHTVSSVSNYMARFSLILSKTESLEVDWSLVKVEDIDDEYCLDESGNRI-DRDGKPL 221
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNKEPPLLMQC 1053
+HTDGTG+ISEDLA+ CPKD YI+ E PLL+Q
Sbjct: 222 IHTDGTGFISEDLALLCPKDLLKRDYISKEYIE---------------------PLLLQF 260
Query: 1052 RLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPRRN 873
RLF+ G AVKGT L+N+ L P TIQIRPSM+KVE D + ++T NSLEIV +S R
Sbjct: 261 RLFYKGRAVKGTFLINKTLPPKTIQIRPSMVKVETDPMISDDQTVNSLEIVTVSKSHRNT 320
Query: 872 YLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAERM 693
+ S++LIALL +GGVP+E+F LLM L +TR V+ +RRAA +VA NH +D + + +M
Sbjct: 321 FFSRHLIALLCHGGVPKEYFRELLMKDLEDTRGVFCSRRAAFKVAYNHGEIDDDYNSVKM 380
Query: 692 ISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCIILD 513
I +G+PL E YLQ LS L++ E L++GKI +S+ LMGTADPTG+L DEVCIILD
Sbjct: 381 ILSGIPLEESYLQYRLSILKKEENKSLQKGKICSPQSYMLMGTADPTGILERDEVCIILD 440
Query: 512 IGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMATG 333
G +SG+VLVYR+PG+HFGD+H++KA YVKE+E VVGNAKY IFFS KG RS A EM G
Sbjct: 441 SGQMSGQVLVYRHPGLHFGDIHLLKARYVKELEYVVGNAKYAIFFSCKGPRSVADEMGGG 500
Query: 332 DFDGDMYWISRNSELLKYFKANEPW-NRVYSIPDSKKRNPQE-FSDVXXXXXXXXXXXXX 159
DFDGD+YW+SRN +LL+ FK +EPW S P P E +
Sbjct: 501 DFDGDLYWVSRNPQLLECFKPSEPWIEASSSTPKVASTRPSELLPNHIEDALIKLFLKTR 560
Query: 158 XRPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
PSF M+ A++SWL MDRLL LGD +EK ++K +++L+D+YY+ALDA
Sbjct: 561 FEPSFAMSEASDSWLAMMDRLLILGDSSNSEKTHVKANMLRLVDLYYEALDA 612
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 491 bits (1263), Expect = e-136
Identities = 254/438 (57%), Positives = 321/438 (73%), Gaps = 3/438 (0%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFV+KD+ G K+ + E+K +VKCYFVR++S+ PY ++ YIL K + EARC
Sbjct: 327 RFFVYKDD--GKKRRLKDKEEKID--SVKCYFVRMESLNPYENE-TYILHDKMVHEARCN 381
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH++ VS++ KYMARFSLILS T+KL+VDL + ++ IEDI D++G II+DEDGKP+
Sbjct: 382 FMHVHMVSSMAKYMARFSLILSTTVKLQVDLNSVNIDRIEDIYCHDKSGRIIYDEDGKPL 441
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNS---GDAACQKRGAEARNKEPPLL 1062
+HTDGTGYISEDLA KCP+DF K+ N N G+ + + AE ++ EPPLL
Sbjct: 442 IHTDGTGYISEDLARKCPQDFFNVKHKCANLVRYANGVKLGENSSELGEAEFQSGEPPLL 501
Query: 1061 MQCRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRP 882
MQCRLF+ G AVKGTLLVNRKL TIQIRPSMIKVE D ++ + FNSLEI S +P
Sbjct: 502 MQCRLFYNGLAVKGTLLVNRKLPQRTIQIRPSMIKVEADPRLSRAHMFNSLEINTPSLKP 561
Query: 881 RRNYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVA 702
R YLS+ LIALL YGGVP E+F ++L N L ET+ +YS+ AL+VA NH D A A
Sbjct: 562 RNTYLSRTLIALLTYGGVPVEYFYDILNNTLEETQRLYSDEVTALKVAVNHRDRDDASTA 621
Query: 701 ERMISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCI 522
MI AGVPL EPYL CLS+L + E+ LK G++PI+++FYLMGTADPT LN EVC+
Sbjct: 622 TSMIMAGVPLTEPYLWCCLSSLAKEERNGLKGGRLPIADTFYLMGTADPTDTLNRHEVCV 681
Query: 521 ILDIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEM 342
IL+ G I G+VL+YRNPG+HFGD+H + AV VK + ++VGNAKYGIFFSTKG RSAA E+
Sbjct: 682 ILEHGQIFGEVLIYRNPGLHFGDIHRLLAVPVKNLGDIVGNAKYGIFFSTKGPRSAATEI 741
Query: 341 ATGDFDGDMYWISRNSEL 288
A GDFDGD YWIS+N +L
Sbjct: 742 ANGDFDGDKYWISQNPQL 759
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 490 bits (1262), Expect = e-136
Identities = 269/539 (49%), Positives = 350/539 (64%), Gaps = 9/539 (1%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFVFKD KK K + S VKCYFVR+ S Y LS + EARC
Sbjct: 697 RFFVFKDGGNEEKK------KNPTSSPVKCYFVRVASDAAIDKGVYYRLSHMTMYEARCL 750
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH + +++I+ YMARFSLILSKT+ L+ D + VE I++ DE+G+ I+ D KP+
Sbjct: 751 FMHAHTLASIDNYMARFSLILSKTMSLKADWSLVKVEIIDEEYCLDESGNCIY-RDEKPL 809
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQ--KRGAEARNKEPPLLM 1059
+HTDGTG+ISEDLA+ CPK + ++I+D + + D K A R +EPPLL+
Sbjct: 810 IHTDGTGFISEDLALLCPKIEAKGQWISDEHMKGLPDPDELDDTGKNRAGLRTEEPPLLI 869
Query: 1058 QCRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRPR 879
QCRLFH G A KGTLLVN+KL+P IQIRPSM+KV+ D + +T NSLEIV S PR
Sbjct: 870 QCRLFHNGSASKGTLLVNKKLQPNRIQIRPSMLKVKTDPVISNNQTLNSLEIVGTSTPPR 929
Query: 878 RNYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVAE 699
+LS+ LIALL +GGVP+EFF+ +L AL ++ V+ +RAAL+VA + +D F+
Sbjct: 930 NTHLSRILIALLVHGGVPEEFFMQILNKALEDSHGVFCKKRAALKVAEKYGEMDDNFLGR 989
Query: 698 RMISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCII 519
MIS G+PL E YL+ LS L + E L++G++ I +S+ LMGTADPTG L DEVC
Sbjct: 990 LMISFGIPLEESYLRYRLSVLMKEENNSLRKGRLYIPDSYNLMGTADPTGTLKEDEVC-- 1047
Query: 518 LDIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEMA 339
G +SGKVLVYR PG+H GD+H++KA YVKEIE +VGNAKYGIFFS KG RS A EM
Sbjct: 1048 --DGQLSGKVLVYRYPGLHIGDIHVLKATYVKEIEYIVGNAKYGIFFSCKGPRSIADEMG 1105
Query: 338 TGDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKK-------RNPQEFSDVXXXXXX 180
GDFDGD+YW+SRN +LL+++K +EPW SI K +P++ DV
Sbjct: 1106 GGDFDGDLYWVSRNPQLLEWYKPSEPWIEA-SISTKKNPSRCPSDHSPEDLEDV----LF 1160
Query: 179 XXXXXXXXRPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
PSF M+ AA++WL +MD LTLGD EKN +K KI+QL+D+YY ALDA
Sbjct: 1161 RSFLTTRFEPSFAMSEAADNWLAWMDHFLTLGDSNIHEKNNVKEKILQLVDLYYTALDA 1219
>ref|XP_006853665.1| hypothetical protein AMTR_s00056p00110240 [Amborella trichopoda]
gi|548857326|gb|ERN15132.1| hypothetical protein
AMTR_s00056p00110240 [Amborella trichopoda]
Length = 988
Score = 486 bits (1251), Expect = e-134
Identities = 266/534 (49%), Positives = 342/534 (64%), Gaps = 5/534 (0%)
Frame = -1
Query: 1589 FFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCRF 1410
FFVFKD K E K A+ + VKCYFV + S YILS K I EAR F
Sbjct: 278 FFVFKDG------GKEEKRKNANTTGVKCYFVCMKSDAESDMHTPYILSNKTIQEARSMF 331
Query: 1409 MHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPIL 1230
M ++ V + KYMARFSLILSKTIKLEVDL + +E I D P D + I++D++G+ ++
Sbjct: 332 MDVHTVPNLAKYMARFSLILSKTIKLEVDLGSVNIERINDKPCLDNHNEIVYDQNGQCLI 391
Query: 1229 HTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVNSGDAACQKRGAEARNK----EPPLL 1062
HTDGTG+ISEDL K K+ +Y+ E +G K + K + LL
Sbjct: 392 HTDGTGFISEDLMSKFSKNIFKERYLKQKKVETCLNGMELNAKSVLDEEIKYVSGDLHLL 451
Query: 1061 MQCRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRP 882
+Q RLF+ G AVKGT+LVN+ L P TIQ+RPSM+KVERD + +FNS E+V SNRP
Sbjct: 452 IQFRLFYDGCAVKGTVLVNKLLPPNTIQVRPSMVKVERDTDFSRLPSFNSFEMVGTSNRP 511
Query: 881 RRNYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVA 702
R LS+YLI LL++GGVP+ F+ L+ AL + +NV +++ AL A + + +
Sbjct: 512 RGAALSRYLITLLSHGGVPKSCFMFLIQAALDDVQNVRYSKKLALTAAVKYQEISDNLLV 571
Query: 701 ERMISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCI 522
RMI G+PL EPYLQ LS L + E+ LKEGK+ + S+YLMGTADPTG L +EVCI
Sbjct: 572 ARMIFCGLPLEEPYLQHRLSILMKEERKGLKEGKVLLPNSYYLMGTADPTGKLKGNEVCI 631
Query: 521 ILDIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEM 342
ILD G ISGKVLVYR+PG+HFGD+H+ A Y++++ E+VGNAK+ IFFST+G RSAA E+
Sbjct: 632 ILDHGQISGKVLVYRHPGLHFGDIHVFTATYIEDLVEIVGNAKFAIFFSTQGPRSAADEI 691
Query: 341 ATGDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSKKRNPQEFS-DVXXXXXXXXXXX 165
A GDFDGDMYWIS N ELL YFKA PW R S +R P E+S D
Sbjct: 692 ANGDFDGDMYWISTNPELLHYFKAGPPWERSSSEKPPPQRKPIEYSPDELETELFDLFLE 751
Query: 164 XXXRPSFDMATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
PS AA+SWL +MDRLLTLGD+ A EK L K+++L D+YY+A+DA
Sbjct: 752 SRFHPSIAKCAAADSWLVYMDRLLTLGDECAEEKGCLHQKMLKLADLYYEAVDA 805
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 486 bits (1251), Expect = e-134
Identities = 266/537 (49%), Positives = 342/537 (63%), Gaps = 7/537 (1%)
Frame = -1
Query: 1592 RFFVFKDERKGVKKNKMENEKKASYSAVKCYFVRIDSVVPYGDDGNYILSGKRISEARCR 1413
RFFVFKD K KK K S VKCYF+R DS YI +GK + EAR
Sbjct: 287 RFFVFKDGGKEEKK------KDVSTKGVKCYFIRTDSTASIDMQNPYIFAGKSMHEARMH 340
Query: 1412 FMHIYNVSTIEKYMARFSLILSKTIKLEVDLAAATVETIEDIPFQDENGSIIHDEDGKPI 1233
FMH+ +S++ YM+RFSLILSKT LEVD+ T E I+DI D++ + D++GKP
Sbjct: 341 FMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPC 400
Query: 1232 LHTDGTGYISEDLAMKCPKDFSAAKYITDNSFEIVN---SGDAACQKRGAEARNKEPPLL 1062
+H+DGTGYISEDLA CP + K + N+ + N G C +EPPLL
Sbjct: 401 IHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPC--------GQEPPLL 452
Query: 1061 MQCRLFHGGYAVKGTLLVNRKLEPGTIQIRPSMIKVERDEKVPKEETFNSLEIVAISNRP 882
+Q R+F+ GYAVKGT L N+KL P T+Q+RPSMIKV D + TFNSLE+V SN P
Sbjct: 453 IQFRIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPP 512
Query: 881 RRNYLSKYLIALLNYGGVPQEFFLNLLMNALVETRNVYSNRRAALRVASNHDGLDFAFVA 702
R+ LS+ L+ALL+YGGVP +FFLN+L N L E++ ++ + RAA + A N+ D + A
Sbjct: 513 RKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG--DDQYTA 570
Query: 701 ERMISAGVPLNEPYLQLCLSNLERGEKTKLKEGKIPISESFYLMGTADPTGVLNNDEVCI 522
+ MI G+PL+EPYL+ LS L + E+ LK G+ PI ES+Y+MGT DPTG L +E+C+
Sbjct: 571 D-MILVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICV 629
Query: 521 ILDIGPISGKVLVYRNPGMHFGDVHIMKAVYVKEIEEVVGNAKYGIFFSTKGWRSAAYEM 342
IL G ISG VLVYRNPG+HFGD+H++KA YVK +E+ VGNAK+ +FF KG RS E+
Sbjct: 630 ILHSGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEI 689
Query: 341 ATGDFDGDMYWISRNSELLKYFKANEPWNRVYSIPDSK---KRNPQEFSDVXXXXXXXXX 171
A GDFDGDMY+ISRN +LL++FK +EPW V S SK R P E S+
Sbjct: 690 AGGDFDGDMYFISRNPKLLEHFKPSEPW--VSSSKPSKIYCGRKPSELSEEELEEELFKM 747
Query: 170 XXXXXRPSFD-MATAAESWLTFMDRLLTLGDDRATEKNYLKGKIIQLIDIYYDALDA 3
D + AA+ WL MD LTLGD+ A EK K I++LIDIYYDALDA
Sbjct: 748 FLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDA 804