BLASTX nr result
ID: Rehmannia26_contig00006096
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00006096
(919 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 202 2e-49
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 198 3e-48
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 189 1e-45
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 189 1e-45
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu... 186 1e-44
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu... 186 1e-44
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no... 174 4e-41
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera] 173 7e-41
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 168 3e-39
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe... 167 5e-39
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 167 7e-39
ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Popu... 165 2e-38
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 164 4e-38
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 163 7e-38
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 163 7e-38
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 160 5e-37
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 160 5e-37
ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Popu... 160 6e-37
ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Popu... 160 6e-37
gb|EOY15730.1| RNA-dependent RNA polymerase family protein, puta... 159 2e-36
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 202 bits (513), Expect = 2e-49
Identities = 101/193 (52%), Positives = 136/193 (70%), Gaps = 1/193 (0%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
YDALDAPKSGKKV +P LKA +PHYME+ SYHS+SILGQIYD V ++ +E +
Sbjct: 820 YDALDAPKSGKKVSIPHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCIT 879
Query: 737 EVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEA 558
E+ KL CF++ IP+ + +W+ RYE Y+K+M A+ E + + NEVIKKYK LLY A
Sbjct: 880 EISKLPCFEVEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGA 939
Query: 557 PDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGPK 381
+ E++ + T+ I++EA+AIYHV Y+ A I + +EKC FAW+VAGSALC + A K
Sbjct: 940 VEFEQTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMY---RK 996
Query: 380 EKPLTILPSVLRD 342
EK L ILPSVL++
Sbjct: 997 EKDLPILPSVLQE 1009
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 198 bits (503), Expect = 3e-48
Identities = 102/192 (53%), Positives = 137/192 (71%), Gaps = 2/192 (1%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
YDA+DAPKSG KV +P+ LK + +PH++++ SYHS+S+LG+IYDRV K E
Sbjct: 908 YDAIDAPKSGNKVYIPKRLKVDKFPHFLQKKE--SYHSTSVLGEIYDRVEKFKAEEPAAV 965
Query: 737 EVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEA 558
E+ KLS F++ IP+ + +W+ RY +YR EMKEAL + ESKND A++VIKKYKQLLYEA
Sbjct: 966 EIKKLSAFEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKYKQLLYEA 1025
Query: 557 PDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGP- 384
PDMEES ++T +Y +A+AIY V Y+YA G V KC FAW+VAG+ALC L A A
Sbjct: 1026 PDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHAELHAKEH 1085
Query: 383 KEKPLTILPSVL 348
+K + + PS+L
Sbjct: 1086 NQKVMAMSPSIL 1097
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 189 bits (481), Expect = 1e-45
Identities = 102/194 (52%), Positives = 136/194 (70%), Gaps = 3/194 (1%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
YDALDAPKSG KV V +ELKAE +PH+M R + SYHS+SILGQIYD V + + E +
Sbjct: 738 YDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTK 795
Query: 737 EVWKLSCFDIP-IPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
E+W+L F+I +P+A + WK RY+ YR EM AL+ G E+K++ A EVI KYKQ+LY
Sbjct: 796 EIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYG 855
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWRIAG 387
A + EES +N + I++EA+AIYHV YE+ +I+G V C+F WRVAG ALC L ++
Sbjct: 856 AAEFEESPRNLEDIFDEALAIYHVTYEF-VINGARVSYCNFPWRVAGRALCKLYTVKLG- 913
Query: 386 PKEKPLTILPSVLR 345
EK + +PSVLR
Sbjct: 914 --EKSMVCVPSVLR 925
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 189 bits (481), Expect = 1e-45
Identities = 102/194 (52%), Positives = 136/194 (70%), Gaps = 3/194 (1%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
YDALDAPKSG KV V +ELKAE +PH+M R + SYHS+SILGQIYD V + + E +
Sbjct: 752 YDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTK 809
Query: 737 EVWKLSCFDIP-IPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
E+W+L F+I +P+A + WK RY+ YR EM AL+ G E+K++ A EVI KYKQ+LY
Sbjct: 810 EIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYG 869
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWRIAG 387
A + EES +N + I++EA+AIYHV YE+ +I+G V C+F WRVAG ALC L ++
Sbjct: 870 AAEFEESPRNLEDIFDEALAIYHVTYEF-VINGARVSYCNFPWRVAGRALCKLYTVKLG- 927
Query: 386 PKEKPLTILPSVLR 345
EK + +PSVLR
Sbjct: 928 --EKSMVCVPSVLR 939
>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334280|gb|ERP58267.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 877
Score = 186 bits (471), Expect = 1e-44
Identities = 96/193 (49%), Positives = 133/193 (68%), Gaps = 2/193 (1%)
Frame = -3
Query: 917 YDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQ 741
YDALDAPK G ++++VP+ LKAE++PH+M + +Y S+SILG+IYD+V A+++ +
Sbjct: 685 YDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSS 744
Query: 740 REVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
+VWKL CFD + E Y+ WK Y YRKEM+ AL++G+ES ND ANEVI+KYK+ LYE
Sbjct: 745 NDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYE 803
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGP 384
A + S + + I+EEA+A+Y V Y +A G V CSFAWRVAG ALC L + G
Sbjct: 804 AAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG- 862
Query: 383 KEKPLTILPSVLR 345
E+P+ PS L+
Sbjct: 863 -ERPMICSPSALK 874
>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
gi|550334279|gb|ERP58266.1| hypothetical protein
POPTR_0007s06560g [Populus trichocarpa]
Length = 899
Score = 186 bits (471), Expect = 1e-44
Identities = 96/193 (49%), Positives = 133/193 (68%), Gaps = 2/193 (1%)
Frame = -3
Query: 917 YDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQ 741
YDALDAPK G ++++VP+ LKAE++PH+M + +Y S+SILG+IYD+V A+++ +
Sbjct: 707 YDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSS 766
Query: 740 REVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
+VWKL CFD + E Y+ WK Y YRKEM+ AL++G+ES ND ANEVI+KYK+ LYE
Sbjct: 767 NDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYE 825
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGP 384
A + S + + I+EEA+A+Y V Y +A G V CSFAWRVAG ALC L + G
Sbjct: 826 AAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG- 884
Query: 383 KEKPLTILPSVLR 345
E+P+ PS L+
Sbjct: 885 -ERPMICSPSALK 896
>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
Length = 521
Score = 174 bits (441), Expect = 4e-41
Identities = 99/212 (46%), Positives = 133/212 (62%), Gaps = 20/212 (9%)
Frame = -3
Query: 917 YDALDAPKSGKK-------------------VKVPQELKAEMYPHYMERWPDLSYHSSSI 795
YDALDAPK G K V+VP+ELK +PHYME+ S+HS SI
Sbjct: 312 YDALDAPKQGGKQQDLAKFFEAYAALELSFQVEVPRELKPNRFPHYMEK--QNSFHSRSI 369
Query: 794 LGQIYDRVIAHKNEAVLQREVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDES 615
LG IYD V A++ E +E++KL F++ +PEA + WKA Y+ YR +M +AL + D
Sbjct: 370 LGWIYDEVDAYQLEDHSNKEIFKLPHFEVEVPEACLTKWKAHYKDYRDDMCDALLAKDVG 429
Query: 614 KNDAANEVIKKYKQLLYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAW 438
K +AA EV +KYK+LLY A ++EES+K + IY EA+AIYHV Y+YA+ V CSFAW
Sbjct: 430 KTEAAEEVKRKYKRLLYGAEELEESTKKMEEIYNEALAIYHVCYDYAISQRKVSYCSFAW 489
Query: 437 RVAGSALCNLCAWRIAGPKEKPLTILPSVLRD 342
+AGSAL L A++ G E+ LPSVL++
Sbjct: 490 NIAGSALLKLHAFKKIG--ERAFFCLPSVLKE 519
>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 173 bits (439), Expect = 7e-41
Identities = 97/193 (50%), Positives = 128/193 (66%), Gaps = 2/193 (1%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
YDALDAPKSG KV V +ELKAE +PH+M R + SYHS+SILGQIYD V + + E +
Sbjct: 1021 YDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTK 1078
Query: 737 EVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEA 558
+ +P+A + WK RY+ YR EM AL+ G E+K++ A EVI KYKQ+LY A
Sbjct: 1079 DA---------VPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGA 1129
Query: 557 PDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG--VEKCSFAWRVAGSALCNLCAWRIAGP 384
+ EES + + I++EA+AIYHV YE+A I+G V C+F WRVAG ALC L ++
Sbjct: 1130 AEFEESPRKLEDIFDEALAIYHVTYEFA-INGARVSYCNFPWRVAGRALCKLYTVKLG-- 1186
Query: 383 KEKPLTILPSVLR 345
EK + +PSVLR
Sbjct: 1187 -EKSMVCVPSVLR 1198
>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 168 bits (425), Expect = 3e-39
Identities = 93/193 (48%), Positives = 127/193 (65%), Gaps = 1/193 (0%)
Frame = -3
Query: 917 YDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQ 741
YDALDAPK G KK++VP+ LKA PH+MER + SY S+SILGQI+D ++ E V
Sbjct: 866 YDALDAPKKGGKKIEVPKHLKAGTLPHFMERGKN-SYVSTSILGQIFDTANMYQEE-VPN 923
Query: 740 REVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
EV KL CF+ +PE WK YE YRK+M +A++ ++KN AA IKKYK++LY
Sbjct: 924 IEVQKLPCFEEELPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYG 983
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGPK 381
A ++E S ++ + +Y+EA+AIY V Y++AM V C FAW+VAGSAL L A +
Sbjct: 984 AEELEGSPRSNEEVYQEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIK---HS 1040
Query: 380 EKPLTILPSVLRD 342
E+ LPSV+R+
Sbjct: 1041 ERSFHCLPSVMRE 1053
>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
Length = 798
Score = 167 bits (423), Expect = 5e-39
Identities = 88/171 (51%), Positives = 121/171 (70%), Gaps = 3/171 (1%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
Y+ALDAPK G KV VP ELK+ ++PHYMER SY S+SILG IYD V A++ E +
Sbjct: 607 YEALDAPKKGGKVVVPGELKSNLFPHYMERVN--SYKSTSILGLIYDTVNAYQAEDASIK 664
Query: 737 EVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGD-ESKNDAANEVIKKYKQLLY- 564
EV KL FD+ +PE + W+ Y+ YR EM A++ D +SKN+AA++V++KYK++LY
Sbjct: 665 EVKKLPMFDVEVPEECLKKWREHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYG 724
Query: 563 EAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALC 414
A D+E S++ I++EA+AIY V Y++A+ G V KC FAW+VAGSALC
Sbjct: 725 GAEDLENSTRPLHEIFDEALAIYRVTYDHAISQGAVGKCCFAWKVAGSALC 775
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
Length = 988
Score = 167 bits (422), Expect = 7e-39
Identities = 96/196 (48%), Positives = 133/196 (67%), Gaps = 4/196 (2%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRV-IAHKNEAVLQ 741
Y+ALDAPKSG+KV+VP +L AE++PHYME+ D S+ S+SILG IYD V I +N+ V
Sbjct: 796 YEALDAPKSGRKVQVPNDLIAELFPHYMEK--DKSFTSTSILGLIYDEVEIWLENDMV-- 851
Query: 740 REVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLLY 564
E+WKL CFD+ +P + + WK +YE YRK+M +AL D+SK ++ A EV +KYK+ Y
Sbjct: 852 GEIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFY 911
Query: 563 -EAPDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIA 390
+ME K+ I+ EA+A+Y+V YEYAM+ V++C FAW++AGSAL L I
Sbjct: 912 GPTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRL---YII 968
Query: 389 GPKEKPLTILPSVLRD 342
EK L PSV+R+
Sbjct: 969 KQNEKALNCDPSVVRE 984
>ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
Length = 189
Score = 165 bits (418), Expect = 2e-38
Identities = 86/182 (47%), Positives = 122/182 (67%), Gaps = 1/182 (0%)
Frame = -3
Query: 887 KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQREVWKLSCFDI 708
K+++VP+ LKAE++PH+M + +Y S+SILG+IYD+V A+++ + +VWKL CFD
Sbjct: 8 KQIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCFDG 67
Query: 707 PIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYEAPDMEESSKNT 528
+ E+ + WK Y YR EM+ AL++G E KN+ ANEVIKKYK++LYEA + S +
Sbjct: 68 EVHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYEAAEFNLSRRRD 126
Query: 527 QVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGPKEKPLTILPSV 351
+ I+EEA A+Y V Y +A G V CSFAWRVAG ALC L + G E+P+ PS
Sbjct: 127 EEIFEEARALYQVTYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICSPSA 184
Query: 350 LR 345
L+
Sbjct: 185 LK 186
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 164 bits (415), Expect = 4e-38
Identities = 96/195 (49%), Positives = 126/195 (64%), Gaps = 3/195 (1%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
Y ALDA K G KV VP+ELK +PHYM + + SY S+SILG IY+RV H+ E +
Sbjct: 1214 YTALDAAKKGVKVDVPKELKVSCFPHYMGK--NRSYPSTSILGSIYNRVDEHQTEDRSLK 1271
Query: 737 EVWKLSCFDI-PIPEAYVNMWKARYESYRKEMKEALESGD-ESKNDAANEVIKKYKQLLY 564
EV KL FD +P+A ++ W + YRKEM AL+ D +SKN +A+ VI+KY+++LY
Sbjct: 1272 EVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDDDDKQSKNQSADVVIRKYRKILY 1331
Query: 563 EAPDMEESSKNTQVIYEEAVAIYHVIYEYA-MIHGVEKCSFAWRVAGSALCNLCAWRIAG 387
EA D EES + + IY EA AIYHV Y++A + V+ CSFAWRVAG ALC L A
Sbjct: 1332 EANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRVAGKALCQLHA---RN 1388
Query: 386 PKEKPLTILPSVLRD 342
E+ TI+ SVL +
Sbjct: 1389 NNERFCTIVSSVLME 1403
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 163 bits (413), Expect = 7e-38
Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 2/194 (1%)
Frame = -3
Query: 917 YDALDAPK-SGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQ 741
YDALDAPK SG KV+VP++LK E +P YM R +S+ S+S+LG IY+ V +++
Sbjct: 820 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSV 879
Query: 740 REVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
E+WKL CFD +PEA + WK Y+ YR EMKEA++ + +AA VI+KYKQ+LY
Sbjct: 880 TEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYG 939
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGP 384
A + E+S++ + IY EA+AIY++ Y+ A V CSFAWRVAGSAL A R
Sbjct: 940 AAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR---Q 996
Query: 383 KEKPLTILPSVLRD 342
++ + SVLR+
Sbjct: 997 GDRSMLCSASVLRE 1010
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 163 bits (413), Expect = 7e-38
Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 2/194 (1%)
Frame = -3
Query: 917 YDALDAPK-SGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQ 741
YDALDAPK SG KV+VP++LK E +P YM R +S+ S+S+LG IY+ V +++
Sbjct: 822 YDALDAPKKSGIKVEVPEDLKVEKFPCYMRRDESVSFESTSVLGTIYNTVKSYEAVDRSV 881
Query: 740 REVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
E+WKL CFD +PEA + WK Y+ YR EMKEA++ + +AA VI+KYKQ+LY
Sbjct: 882 TEIWKLPCFDDGVPEACMTKWKGYYDQYRWEMKEAIDKCTVEREEAAELVIEKYKQILYG 941
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMI-HGVEKCSFAWRVAGSALCNLCAWRIAGP 384
A + E+S++ + IY EA+AIY++ Y+ A V CSFAWRVAGSAL A R
Sbjct: 942 AAEFEQSTRTLEEIYNEALAIYNITYDLAASRRQVSYCSFAWRVAGSALRKFYARR---Q 998
Query: 383 KEKPLTILPSVLRD 342
++ + SVLR+
Sbjct: 999 GDRSMLCSASVLRE 1012
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 160 bits (406), Expect = 5e-37
Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
YDALDAPK G KV +P +L+ + +PHYMER P + S+SILG I+D V +H E
Sbjct: 799 YDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPS 858
Query: 737 EVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLLY 564
E+ KL F D P+P+++++ + + YE+YR EM +A+ D+ K N NEVI++YKQ Y
Sbjct: 859 EISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFY 918
Query: 563 EAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGP 384
A E+S+K+ + +Y +A+A+Y+V+Y+YA+ GV KC+FAW VAG LC + +
Sbjct: 919 GAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKT 975
Query: 383 KEKPLTILPSVLR 345
K+K + SVL+
Sbjct: 976 KDKSVVASTSVLK 988
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 160 bits (406), Expect = 5e-37
Identities = 84/193 (43%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
YDALDAPK G KV +P +L+ + +PHYMER P + S+SILG I+D V +H E
Sbjct: 773 YDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPS 832
Query: 737 EVWKLSCF-DIPIPEAYVNMWKARYESYRKEMKEALESGDESK-NDAANEVIKKYKQLLY 564
E+ KL F D P+P+++++ + + YE+YR EM +A+ D+ K N NEVI++YKQ Y
Sbjct: 833 EISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFY 892
Query: 563 EAPDMEESSKNTQVIYEEAVAIYHVIYEYAMIHGVEKCSFAWRVAGSALCNLCAWRIAGP 384
A E+S+K+ + +Y +A+A+Y+V+Y+YA+ GV KC+FAW VAG LC + +
Sbjct: 893 GAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKT 949
Query: 383 KEKPLTILPSVLR 345
K+K + SVL+
Sbjct: 950 KDKSVVASTSVLK 962
>ref|XP_006381765.1| hypothetical protein POPTR_0006s17780g [Populus trichocarpa]
gi|550336519|gb|ERP59562.1| hypothetical protein
POPTR_0006s17780g [Populus trichocarpa]
Length = 866
Score = 160 bits (405), Expect = 6e-37
Identities = 89/193 (46%), Positives = 125/193 (64%), Gaps = 2/193 (1%)
Frame = -3
Query: 917 YDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQ 741
YDALDAPK G +K++VP+ LKAE++PH+ME+ +Y S+SILG+IYD+V A+++ +
Sbjct: 685 YDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMDLSS 744
Query: 740 REVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
+ E+ + WK Y YR EM+ AL++G E KN+ ANEVIKKYK++LYE
Sbjct: 745 N-----------VHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYE 792
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGP 384
A + S + + I+EEA A+Y V Y +A G V KC FAWRVAG ALC L + +
Sbjct: 793 AAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVLKNQ 850
Query: 383 KEKPLTILPSVLR 345
+E+PL PS L+
Sbjct: 851 EERPLICSPSALK 863
>ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
Length = 211
Score = 160 bits (405), Expect = 6e-37
Identities = 89/193 (46%), Positives = 125/193 (64%), Gaps = 2/193 (1%)
Frame = -3
Query: 917 YDALDAPKSG-KKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQ 741
YDALDAPK G +K++VP+ LKAE++PH+ME+ +Y S+SILG+IYD+V A+++ +
Sbjct: 30 YDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMDLSS 89
Query: 740 REVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGDESKNDAANEVIKKYKQLLYE 561
+ E+ + WK Y YR EM+ AL++G E KN+ ANEVIKKYK++LYE
Sbjct: 90 N-----------VHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYE 137
Query: 560 APDMEESSKNTQVIYEEAVAIYHVIYEYAMIHG-VEKCSFAWRVAGSALCNLCAWRIAGP 384
A + S + + I+EEA A+Y V Y +A G V KC FAWRVAG ALC L + +
Sbjct: 138 AAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTL--YVLKNQ 195
Query: 383 KEKPLTILPSVLR 345
+E+PL PS L+
Sbjct: 196 EERPLICSPSALK 208
>gb|EOY15730.1| RNA-dependent RNA polymerase family protein, putative isoform 1
[Theobroma cacao]
Length = 328
Score = 159 bits (401), Expect = 2e-36
Identities = 89/197 (45%), Positives = 132/197 (67%), Gaps = 5/197 (2%)
Frame = -3
Query: 917 YDALDAPKSGKKVKVPQELKAEMYPHYMERWPDLSYHSSSILGQIYDRVIAHKNEAVLQR 738
Y++LDAPK+GKK++VP+EL+A+ +PHY+ER S+ S+SILG+IYD V ++ E + ++
Sbjct: 135 YESLDAPKTGKKIEVPRELRADAFPHYLER--QKSFKSASILGKIYDFVKSY-GEELPRK 191
Query: 737 EVWKLSCFDIPIPEAYVNMWKARYESYRKEMKEALESGD----ESKNDAANEVIKKYKQL 570
EV KL CFD+ P+ W Y+ YR++M + L++ D E ++ AAN V KYKQ
Sbjct: 192 EVRKLPCFDVGFPQDCREKWTELYKQYREDMTQTLQTLDGKSKELRDVAANAVYNKYKQE 251
Query: 569 LYEAPDMEESSKNTQVIYEEAVAIYHVIYEYAM-IHGVEKCSFAWRVAGSALCNLCAWRI 393
LY +E+ + IY+EA+AIY++ Y+YA+ I V KC FAW+VAGSAL +L A
Sbjct: 252 LYGGAVLEQRQRPLDQIYKEALAIYNISYDYAIRIDDVGKCGFAWKVAGSALLSLYA--- 308
Query: 392 AGPKEKPLTILPSVLRD 342
+ EK L+ PSVL++
Sbjct: 309 SEQGEKTLSCAPSVLKE 325