BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00005520
         (1746 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...   833   0.0  
gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]       831   0.0  
ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   829   0.0  
gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe...   828   0.0  
ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   827   0.0  
emb|CBI36559.3| unnamed protein product [Vitis vinifera]              825   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   825   0.0  
ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   824   0.0  
ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   823   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...   820   0.0  
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...   816   0.0  
ref|XP_002325119.1| DNA-directed RNA polymerase family protein [...   816   0.0  
ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Popu...   815   0.0  
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...   812   0.0  
emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]            810   0.0  
ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citr...   810   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   801   0.0  
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...   801   0.0  
ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutr...   789   0.0  
ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thal...   788   0.0  

>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score =  833 bits (2151), Expect = 0.0
 Identities = 407/481 (84%), Positives = 439/481 (91%)
 Frame = -1

Query: 1746 VNREDVPISELLSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGFY 1567
            V+R+DVPI EL SDD               KINQE HSQRCDTELKLSVARK+KDEEGFY
Sbjct: 491  VDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFY 550

Query: 1566 YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEK 1387
            YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLA+LY GG+EK
Sbjct: 551  YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEK 610

Query: 1386 LSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTVV 1207
            L YD R++FVEN+I +I DSA+N LNGNRWWL AEDPFQCLAACINLSEAL+SSSPHTV 
Sbjct: 611  LCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVF 670

Query: 1206 SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKD 1027
            SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AGDKPADVY+EIA RV +I++ DS KD
Sbjct: 671  SHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKD 730

Query: 1026 PATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFS 847
            PATDP+ALLAKLLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLF+
Sbjct: 731  PATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFT 790

Query: 846  AACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQR 667
            A+CYAAKVTLAALGELFQAAR  M WLGDCAK+IASENQPVRWTTPLGLPVVQPYFKTQR
Sbjct: 791  ASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQR 850

Query: 666  HVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVHD 487
            HVIRTSLQVLALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL+FAGVHD
Sbjct: 851  HVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHD 910

Query: 486  SFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKVV 307
            SFWTHACDVD+MN+ILR+KFV+LY+MPILE LLESF+ SYP LTFPPLP RGDFDL +V+
Sbjct: 911  SFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVL 970

Query: 306  Q 304
            +
Sbjct: 971  E 971


>gb|EPS64933.1| hypothetical protein M569_09836 [Genlisea aurea]
          Length = 952

 Score =  831 bits (2147), Expect = 0.0
 Identities = 405/480 (84%), Positives = 435/480 (90%)
 Frame = -1

Query: 1746 VNREDVPISELLSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGFY 1567
            VNREDVP+ EL SDD               K N E HS RCDTELKLSVAR MKDEEGFY
Sbjct: 466  VNREDVPLPELHSDDPIEIKKWKFSIRKAKKNNMEMHSLRCDTELKLSVARAMKDEEGFY 525

Query: 1566 YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEK 1387
            YPHN+DFRGRAYPMHPHLNHLSSDLCRGILEF+EGRPLGKSGL WLK+HLANL+GGGV+K
Sbjct: 526  YPHNVDFRGRAYPMHPHLNHLSSDLCRGILEFSEGRPLGKSGLYWLKLHLANLFGGGVQK 585

Query: 1386 LSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTVV 1207
            L YD R+SFVEN I E+FDSADN L+GNRWWLKAEDPFQ LAACIN+SEALRSSSPHTV+
Sbjct: 586  LPYDERLSFVENNITEVFDSADNPLSGNRWWLKAEDPFQFLAACINISEALRSSSPHTVI 645

Query: 1206 SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKD 1027
            SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL+AG KP DVYSEIAERV +IMK DSEKD
Sbjct: 646  SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGHKPTDVYSEIAERVLDIMKSDSEKD 705

Query: 1026 PATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFS 847
            PA DP+A+LAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQI++RL EKG I DD++LF 
Sbjct: 706  PADDPNAVLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIRKRLAEKGFINDDKVLFM 765

Query: 846  AACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQR 667
            AACYAAKVT+AALG+LFQAARAIM WLGDCAKIIASENQPVRWTTPLGLPVVQPYFKT+R
Sbjct: 766  AACYAAKVTMAALGQLFQAARAIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTKR 825

Query: 666  HVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVHD 487
            HVIRTSLQVLALQREGDSVEVRKQ+TAFPPNFVHSLDGSHMMMTA+ACRD GLRFAGVHD
Sbjct: 826  HVIRTSLQVLALQREGDSVEVRKQKTAFPPNFVHSLDGSHMMMTAVACRDAGLRFAGVHD 885

Query: 486  SFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKVV 307
            SFWTHACDVD+MNQILR+KFVDLY+MPILE LLESF++SYPTL FPPLP RGDFDL  V+
Sbjct: 886  SFWTHACDVDKMNQILREKFVDLYSMPILEDLLESFQSSYPTLRFPPLPKRGDFDLRNVL 945


>ref|XP_006343727.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            tuberosum]
          Length = 1015

 Score =  829 bits (2142), Expect = 0.0
 Identities = 404/481 (83%), Positives = 436/481 (90%)
 Frame = -1

Query: 1746 VNREDVPISELLSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGFY 1567
            V+R+DVPI EL SDD               KINQE HSQRCDTELKLSVARK+KDEEGFY
Sbjct: 529  VDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLKDEEGFY 588

Query: 1566 YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEK 1387
            YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK+HLA+LY GG+EK
Sbjct: 589  YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEK 648

Query: 1386 LSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTVV 1207
            L YD RI+FVEN+I +I DSA N LNGNRWWL AEDP QCLAACINLSEAL+S SPHTV+
Sbjct: 649  LCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEALKSPSPHTVI 708

Query: 1206 SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKD 1027
            SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AG+KPADVY+EIA RV +I++ DS KD
Sbjct: 709  SHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKD 768

Query: 1026 PATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFS 847
            PATDP+ALLAKLLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLF+
Sbjct: 769  PATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFT 828

Query: 846  AACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQR 667
            A+CYAAKVTLAALGELFQAAR  M WLGDCAK+IASENQPVRWTTPLGLPVVQPYFKTQR
Sbjct: 829  ASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQR 888

Query: 666  HVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVHD 487
            HVIRTSLQVLALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGVHD
Sbjct: 889  HVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHD 948

Query: 486  SFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKVV 307
            SFWTHACDVD+MN+ILR+KFV+LY+MPILE LLESF+ SYP LTFPPLP RGDFDL +V+
Sbjct: 949  SFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLQEVL 1008

Query: 306  Q 304
            +
Sbjct: 1009 E 1009


>gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus persica]
          Length = 976

 Score =  828 bits (2140), Expect = 0.0
 Identities = 400/482 (82%), Positives = 437/482 (90%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISELL-SDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            VNREDVP+ +   S+D               KINQERHSQRCDTELKLSVARKMKDEEGF
Sbjct: 489  VNREDVPVPDKSPSEDLKEIQEWKWSVRKAKKINQERHSQRCDTELKLSVARKMKDEEGF 548

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGLRWLKIHLANLY GGVE
Sbjct: 549  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVE 608

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLSY+GR++FV+N+I +IFDSA N +NGNRWWL AEDP QCLAACINLSEAL S SPHTV
Sbjct: 609  KLSYEGRLAFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTV 668

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+ GDKPADVYSEIA RVH IMKRDS K
Sbjct: 669  ISHLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVDGDKPADVYSEIAARVHEIMKRDSNK 728

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DP T P+ALLA++L+ Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF
Sbjct: 729  DPTTSPNALLARILVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 788

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACYAAKVTLAALGE+FQAAR IM WLGDCAK+IASENQPVRWTTPLGLPVVQPY K++
Sbjct: 789  TAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSE 848

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQRE +SV++RKQRTAFPPNFVHSLDGSHMMMTA+ACRD GLRFAGVH
Sbjct: 849  RHLIRTSLQVLALQRESNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVH 908

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTH CDVD+MN+ILR+KFV+LY+MPILESLLESF+ SYP LTFPPLP RGDFDL +V
Sbjct: 909  DSFWTHPCDVDQMNEILREKFVELYSMPILESLLESFQASYPALTFPPLPERGDFDLLQV 968

Query: 309  VQ 304
            ++
Sbjct: 969  LE 970


>ref|XP_004242994.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum
            lycopersicum]
          Length = 1007

 Score =  827 bits (2135), Expect = 0.0
 Identities = 402/481 (83%), Positives = 436/481 (90%)
 Frame = -1

Query: 1746 VNREDVPISELLSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGFY 1567
            V+R+DVPI EL SDD               KINQE HSQRCDTELKLSVARK++DEEGFY
Sbjct: 521  VDRKDVPIPELHSDDIMELKRWKWRVRKAKKINQELHSQRCDTELKLSVARKLRDEEGFY 580

Query: 1566 YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEK 1387
            YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK+HLA+LY GG+EK
Sbjct: 581  YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKVHLASLYAGGIEK 640

Query: 1386 LSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTVV 1207
            L YD RI+FVEN+I +I DSA N LNGNRWWL AEDP QCLAACINLSEA++S SPHTV+
Sbjct: 641  LCYDARIAFVENHIDDILDSAHNPLNGNRWWLNAEDPLQCLAACINLSEAVKSLSPHTVI 700

Query: 1206 SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKD 1027
            SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AG+KPADVY+EIA RV +I++ DS KD
Sbjct: 701  SHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSTKD 760

Query: 1026 PATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFS 847
            PATDP+ALLAKLLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLF+
Sbjct: 761  PATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFT 820

Query: 846  AACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQR 667
            A+CYAAKVTLAALGELFQAAR  M WLGDCAK+IASENQPVRWTTPLGLPVVQPYFKTQR
Sbjct: 821  ASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQR 880

Query: 666  HVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVHD 487
            HVIRTSLQVLALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGVHD
Sbjct: 881  HVIRTSLQVLALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHD 940

Query: 486  SFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKVV 307
            SFWTHACDVD+MN+ILR+KFV+LY+MPILE LLESF+ SYP LTFPPLP RGDFDL +V+
Sbjct: 941  SFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQESYPALTFPPLPKRGDFDLREVL 1000

Query: 306  Q 304
            +
Sbjct: 1001 E 1001


>emb|CBI36559.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  825 bits (2130), Expect = 0.0
 Identities = 398/482 (82%), Positives = 442/482 (91%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISELLS-DDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+RE+VP+ E  S +D               KINQERHS RCDTE+KLSVARKMKDEEGF
Sbjct: 321  VDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGF 380

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGLRWLKI LANLY GGVE
Sbjct: 381  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVE 440

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLSYDGR++FV+N++ ++FDSADN LNGNRWWL AEDPFQCLAACINLSEALRSSSPHTV
Sbjct: 441  KLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTV 500

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGR+S EA+AVNL+AG+KPADVYSEIA RVH IMKRDS K
Sbjct: 501  ISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNK 560

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DPATDP ALLAK+LIGQVDRKLVKQTVMTSVYGVTY+GAREQIKRRL EKGLITD+RLLF
Sbjct: 561  DPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLF 620

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACYAAKVTLAALGE+FQAAR IM WLG+CAK+IASENQPV+WTTPLGLPV+QPY K++
Sbjct: 621  TAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSE 680

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQREG  V +RKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGVH
Sbjct: 681  RHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVH 740

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHACDVD+MNQILR+KFV+LY+MPILE+LLESF+TS+PTLTFPPLP+RG+FDL +V
Sbjct: 741  DSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREV 800

Query: 309  VQ 304
            ++
Sbjct: 801  LE 802


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score =  825 bits (2130), Expect = 0.0
 Identities = 398/482 (82%), Positives = 442/482 (91%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISELLS-DDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+RE+VP+ E  S +D               KINQERHS RCDTE+KLSVARKMKDEEGF
Sbjct: 492  VDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGF 551

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGLRWLKI LANLY GGVE
Sbjct: 552  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVE 611

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLSYDGR++FV+N++ ++FDSADN LNGNRWWL AEDPFQCLAACINLSEALRSSSPHTV
Sbjct: 612  KLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTV 671

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGR+S EA+AVNL+AG+KPADVYSEIA RVH IMKRDS K
Sbjct: 672  ISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNK 731

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DPATDP ALLAK+LIGQVDRKLVKQTVMTSVYGVTY+GAREQIKRRL EKGLITD+RLLF
Sbjct: 732  DPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLF 791

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACYAAKVTLAALGE+FQAAR IM WLG+CAK+IASENQPV+WTTPLGLPV+QPY K++
Sbjct: 792  TAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSE 851

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQREG  V +RKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGVH
Sbjct: 852  RHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVH 911

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHACDVD+MNQILR+KFV+LY+MPILE+LLESF+TS+PTLTFPPLP+RG+FDL +V
Sbjct: 912  DSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREV 971

Query: 309  VQ 304
            ++
Sbjct: 972  LE 973


>ref|XP_006474044.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus
            sinensis]
          Length = 1009

 Score =  824 bits (2128), Expect = 0.0
 Identities = 398/482 (82%), Positives = 440/482 (91%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISEL-LSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+R DVPI E  LS+D               KINQERHSQRCDTELKLSVAR+MKDEEGF
Sbjct: 522  VDRNDVPIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 581

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRPLGKSGLRWLKIHLANL+ GGVE
Sbjct: 582  YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 641

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLS+DGR++FVEN++ EIFDSA+N +NG+RWWL AEDPFQCLAACINLSEAL+SSSPH+V
Sbjct: 642  KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 701

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGR++ EAAAVNL+AG+KPADVYSEIA RVH IMKRDS K
Sbjct: 702  ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 761

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DP+  P ALLAK+LI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR LF
Sbjct: 762  DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 821

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACYAAKVTL ALGE+F+AAR+IMGWLGDCAK+IASENQPVRWTTPLGLPVVQPY K +
Sbjct: 822  AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 881

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQREG SVE+RKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGVH
Sbjct: 882  RHLIRTSLQVLALQREGKSVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVH 941

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHACDVD MNQILR+KFV+LYNMPILE+LLESF+TSYPTL+FPPLP RG+FDL +V
Sbjct: 942  DSFWTHACDVDEMNQILRKKFVELYNMPILENLLESFQTSYPTLSFPPLPERGNFDLEEV 1001

Query: 309  VQ 304
            ++
Sbjct: 1002 LE 1003


>ref|XP_004287148.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 973

 Score =  823 bits (2125), Expect = 0.0
 Identities = 397/482 (82%), Positives = 438/482 (90%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISELL-SDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+REDVP+ E   S+D               K+NQERHSQRCDTELKLSVAR+MKDE+GF
Sbjct: 486  VDREDVPVPEKPPSEDPTEIQEWRWSARKAKKLNQERHSQRCDTELKLSVARRMKDEDGF 545

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGLRWLKIHLANLY GGVE
Sbjct: 546  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYSGGVE 605

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLSYDGRISFV+N+I +IFDSA N +NGNRWWL AEDP QCLAACINLSEAL S SPHTV
Sbjct: 606  KLSYDGRISFVDNHIDDIFDSATNPVNGNRWWLTAEDPLQCLAACINLSEALNSPSPHTV 665

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGRD+ EAAAVNL+AG+KPADVYSEIA RVH+IMKRDS K
Sbjct: 666  ISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAVRVHDIMKRDSNK 725

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DP T+P+ALLAK+L+ Q+DRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF
Sbjct: 726  DPTTNPNALLAKVLVNQIDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 785

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACYAAKVTLAALGE+FQAAR IM WLGDCAK+IASENQPVRWTTPLGLPVVQPY K++
Sbjct: 786  TAACYAAKVTLAALGEIFQAARGIMSWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKSE 845

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQRE + V+VRKQRTAFPPNFVHSLDGSHMMMTA+ACRD G+RFAGVH
Sbjct: 846  RHLIRTSLQVLALQRESNLVDVRKQRTAFPPNFVHSLDGSHMMMTALACRDAGIRFAGVH 905

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHACDVD+MNQILR+ FV+LY+ PILE+LLESF+ +YP LTFPPLP RGDFDL +V
Sbjct: 906  DSFWTHACDVDQMNQILRENFVELYSKPILENLLESFQAAYPELTFPPLPERGDFDLQEV 965

Query: 309  VQ 304
            ++
Sbjct: 966  LK 967


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score =  820 bits (2119), Expect = 0.0
 Identities = 401/482 (83%), Positives = 438/482 (90%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISELL-SDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+R+DVPI EL  SDD               KINQE HSQRCDTELKLSVARK+KDEEGF
Sbjct: 490  VDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGF 549

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLA+LY GGVE
Sbjct: 550  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVE 609

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KL YD R++FVEN+I +I DSA+N LNGNRWWL AEDPFQCLAACINLSEAL+SSSPHTV
Sbjct: 610  KLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTV 669

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AG+KPADVY+EIA RV +I++ DS K
Sbjct: 670  ISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIK 729

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DPA DP+ALLAKLLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLF
Sbjct: 730  DPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLF 789

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +A+CYAAKVTLAALGELFQAAR  M WLGDCAK+IA ENQPVRWTTPLGLPVVQPYFKTQ
Sbjct: 790  TASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQ 849

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RHVIRTSLQ+LALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL+FAGVH
Sbjct: 850  RHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVH 909

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHACDVD+MN+ILR+KFV+LY++PILE LLE+F+ SYP LTFPPLP RGDF+L +V
Sbjct: 910  DSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREV 969

Query: 309  VQ 304
            ++
Sbjct: 970  LE 971


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score =  816 bits (2109), Expect = 0.0
 Identities = 392/482 (81%), Positives = 443/482 (91%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISEL-LSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+R D+PI E   S+D               KIN+ERHSQRCDTELKLSVARKM++EEGF
Sbjct: 491  VDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGF 550

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SGL WLKIHLANL+ GGVE
Sbjct: 551  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVE 610

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLS+DGR++FV+N++ +IFDSA+N +NGNRWWL AEDPFQCLAACINLSE+L+SSSPH+V
Sbjct: 611  KLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSV 670

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +S+LPIHQDGSCNGLQHYAALGRDS EAAAVNL+AG+KPADVYSEIA RVHNIMKRDS+K
Sbjct: 671  LSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDK 730

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DPAT+P+A LAKLLI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR+LF
Sbjct: 731  DPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLF 790

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACY AKVTLAALGELFQAAR IMGWLGDCAK+IASENQPV+WTTPLGLPVVQPY+K++
Sbjct: 791  AAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSE 850

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGVH
Sbjct: 851  RHLIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVH 910

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHACDV++MNQILR+KFV+LY+MP+LE+L ES +TSYP+L FPPLP RG+FDL +V
Sbjct: 911  DSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLREV 970

Query: 309  VQ 304
            ++
Sbjct: 971  LK 972


>ref|XP_002325119.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222866553|gb|EEF03684.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 882

 Score =  816 bits (2108), Expect = 0.0
 Identities = 396/482 (82%), Positives = 435/482 (90%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISEL-LSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+RED+PI E   SDD               KINQERHSQRCDTELKLSVARK+KDEEGF
Sbjct: 395  VDREDIPIPEKPSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGF 454

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEF EGRPLGKSGLRWLKIHLANLY GGVE
Sbjct: 455  YYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFEEGRPLGKSGLRWLKIHLANLYSGGVE 514

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLS+DGR++FVEN+++EIFDSA N +NG RWWLKAEDPFQCLAACINLSEAL S+SPHTV
Sbjct: 515  KLSHDGRLAFVENHLSEIFDSAKNPVNGKRWWLKAEDPFQCLAACINLSEALNSASPHTV 574

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGRD+ EAAAVNL+A +KP+DVYSEIA RVH I++RDS K
Sbjct: 575  ISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNK 634

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DPAT+P ALLAK+L+ QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDRLLF
Sbjct: 635  DPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRLLF 694

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            SAACY AKVTL ALGELFQAAR IM WLGDCAKIIASE+QPV+WTTPLGLPVVQPY+KT+
Sbjct: 695  SAACYTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYYKTE 754

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+I+TSLQ+LALQREG SV+VRKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGVH
Sbjct: 755  RHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVH 814

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHA DVD MN+ILR+KFV+LYNMPILE+LLE F+TSYPTL FPPLP RG+FDL KV
Sbjct: 815  DSFWTHATDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLQFPPLPERGNFDLQKV 874

Query: 309  VQ 304
            ++
Sbjct: 875  LR 876


>ref|XP_002308414.1| hypothetical protein POPTR_0006s19490g [Populus trichocarpa]
            gi|222854390|gb|EEE91937.1| hypothetical protein
            POPTR_0006s19490g [Populus trichocarpa]
          Length = 982

 Score =  815 bits (2106), Expect = 0.0
 Identities = 398/482 (82%), Positives = 436/482 (90%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISELLS-DDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            VNR D+PI E LS DD               KINQERHSQRCDTELKLSVARK+KDEEGF
Sbjct: 495  VNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGF 554

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEFAEGRPLGKSGL WLKIHLANLY GGVE
Sbjct: 555  YYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVE 614

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLS+DGR++FVEN+++EIFDSA+N +NG RWWL AEDPFQCLAACINLSEAL+S+SPHTV
Sbjct: 615  KLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTV 674

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+A +KP+DVYSEIA RVH I++RDS K
Sbjct: 675  ISHLPIHQDGSCNGLQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNK 734

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DPAT+P ALLAK+LI +VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG ITDDR+LF
Sbjct: 735  DPATNPHALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLF 794

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            SAACYAAKVTL ALGELFQAAR IMGWLGDCAK+IASE+QPVRWTTPLGLPVVQPY+KTQ
Sbjct: 795  SAACYAAKVTLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQ 854

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQREG SV+VRKQRTAFPPNFVHSLDGSHMMMTA+ACRD  LRFAGVH
Sbjct: 855  RHLIRTSLQVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVH 914

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHA D D MN+ILR+KFV+LYNMPILE+LLE F+TSYPTL FP LP RG+FDL +V
Sbjct: 915  DSFWTHARDADLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEV 974

Query: 309  VQ 304
            ++
Sbjct: 975  LR 976


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score =  812 bits (2097), Expect = 0.0
 Identities = 392/483 (81%), Positives = 443/483 (91%), Gaps = 2/483 (0%)
 Frame = -1

Query: 1746 VNREDVPISEL-LSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+R D+PI E   S+D               KIN+ERHSQRCDTELKLSVARKM++EEGF
Sbjct: 369  VDRNDIPIPEKPSSEDSTESQEWKWSVRKANKINRERHSQRCDTELKLSVARKMENEEGF 428

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLG+SGL WLKIHLANL+ GGVE
Sbjct: 429  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGRSGLHWLKIHLANLFAGGVE 488

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLS+DGR++FV+N++ +IFDSA+N +NGNRWWL AEDPFQCLAACINLSE+L+SSSPH+V
Sbjct: 489  KLSHDGRLAFVDNHLDDIFDSAENPINGNRWWLTAEDPFQCLAACINLSESLKSSSPHSV 548

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +S+LPIHQDGSCNGLQHYAALGRDS EAAAVNL+AG+KPADVYSEIA RVHNIMKRDS+K
Sbjct: 549  LSYLPIHQDGSCNGLQHYAALGRDSLEAAAVNLVAGEKPADVYSEIAVRVHNIMKRDSDK 608

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DPAT+P+A LAKLLI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR+LF
Sbjct: 609  DPATNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRVLF 668

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACY AKVTLAALGELFQAAR IMGWLGDCAK+IASENQPV+WTTPLGLPVVQPY+K++
Sbjct: 669  AAACYTAKVTLAALGELFQAARNIMGWLGDCAKVIASENQPVQWTTPLGLPVVQPYYKSE 728

Query: 669  RHVIRTSLQVLALQREGDS-VEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGV 493
            RH+IRTSLQVLALQREGDS VEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGV
Sbjct: 729  RHLIRTSLQVLALQREGDSVVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 788

Query: 492  HDSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNK 313
            HDSFWTHACDV++MNQILR+KFV+LY+MP+LE+L ES +TSYP+L FPPLP RG+FDL +
Sbjct: 789  HDSFWTHACDVEKMNQILREKFVELYSMPVLENLFESVQTSYPSLVFPPLPERGNFDLRE 848

Query: 312  VVQ 304
            V++
Sbjct: 849  VLK 851


>emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
          Length = 557

 Score =  810 bits (2092), Expect = 0.0
 Identities = 398/482 (82%), Positives = 435/482 (90%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISELL-SDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+R+DVPI EL  SDD               KINQE HSQRCDTELKLSVARK+KDEEGF
Sbjct: 73   VDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGF 132

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLA+LY GGVE
Sbjct: 133  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVE 192

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KL YD R++FVEN+I +I DSA+N LNGNRWWL AEDPFQCLAACINLSEAL+SSSPHTV
Sbjct: 193  KLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTV 252

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGRDS EAAAVNL+AG+KPADVY+EIA RV +I++ DS K
Sbjct: 253  ISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIK 312

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DPA DP+ALLAKLLI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLI DDRLLF
Sbjct: 313  DPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLF 372

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +A+CY   VTLAALGELFQAAR  M WLGDCAK+IA ENQPVRWTTPLGLPVVQPYFKTQ
Sbjct: 373  TASCY---VTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQ 429

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RHVIRTSLQ+LALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL+FAGVH
Sbjct: 430  RHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVH 489

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHACDVD+MN+ILR+KFV+LY++PILE LLE+F+ SYP LTFPPLP RGDF+L +V
Sbjct: 490  DSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREV 549

Query: 309  VQ 304
            ++
Sbjct: 550  LE 551


>ref|XP_006453566.1| hypothetical protein CICLE_v10007333mg [Citrus clementina]
            gi|557556792|gb|ESR66806.1| hypothetical protein
            CICLE_v10007333mg [Citrus clementina]
          Length = 1012

 Score =  810 bits (2091), Expect = 0.0
 Identities = 392/482 (81%), Positives = 437/482 (90%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISEL-LSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            V+R DV I E  LS+D               KINQERHSQRCDTELKLSVAR+MKDEEGF
Sbjct: 525  VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRPLGKSGLRWLKIHLANL+ GGVE
Sbjct: 585  YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLS+DGR++FVEN++ EIFDSA+N +NG+RWWL AEDPFQCLAACINL+EAL+SSSPH+V
Sbjct: 645  KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLAEALKSSSPHSV 704

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGR++ EAAAVNL+AG+KPADVYSEIA RVH IMKRDS K
Sbjct: 705  ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            D +  P ALLAK+LI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITDDR LF
Sbjct: 765  DHSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACYAAKVTL ALGE+F+AAR+IMGWLGDCAK+IASENQPVRWTTPLGLPVVQPY K +
Sbjct: 825  AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 884

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQREG+ VE+RKQRTAFPPNFVHSLDGSHMMMTA+ACRD GL FAGVH
Sbjct: 885  RHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVH 944

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DSFWTHACDVD MNQILR+KFV+LYNMP+LE+LLESF+TSYPTL+FP LP RG+FDL +V
Sbjct: 945  DSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPSLPERGNFDLEEV 1004

Query: 309  VQ 304
            ++
Sbjct: 1005 LE 1006


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  801 bits (2070), Expect = 0.0
 Identities = 385/481 (80%), Positives = 431/481 (89%)
 Frame = -1

Query: 1746 VNREDVPISELLSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGFY 1567
            V+R+DVPI E    D               KINQE HSQRCD ELKLSVARKMKDEEGFY
Sbjct: 489  VDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFY 548

Query: 1566 YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEK 1387
            YPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGL WLKIHLANLY GGVEK
Sbjct: 549  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEK 608

Query: 1386 LSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTVV 1207
            LSYD R++FV++++  IFDSA N +NG+RWWL AEDPFQCLAAC+NLSEAL+SS+PHTV+
Sbjct: 609  LSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVI 668

Query: 1206 SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKD 1027
            S+LPIHQDGSCNGLQHYAALGRD+ EAAAVNL+AG+KPADVYSEIA RVH IM RD+ KD
Sbjct: 669  SYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKD 728

Query: 1026 PATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFS 847
            P T+P+A LAKLLI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKGLI+DDRL F 
Sbjct: 729  PTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFR 788

Query: 846  AACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQR 667
            A+CYAAKVTL+ALGE+F+AAR IMGWLGDCAK+IA +NQPVRWTTPLGLPVVQPY+K++R
Sbjct: 789  ASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSER 848

Query: 666  HVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVHD 487
            H+IRTSLQVLALQREG+ V+VRKQRTAFPPNFVHSLDGSHMM+TA+ACRD GLRFAGVHD
Sbjct: 849  HLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHD 908

Query: 486  SFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKVV 307
            SFWTHACDVDRMN ILR+KFV+LY+MP+LESLLE FET+YP LTFP LP RGDFDL +V+
Sbjct: 909  SFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVL 968

Query: 306  Q 304
            +
Sbjct: 969  K 969


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score =  801 bits (2070), Expect = 0.0
 Identities = 385/481 (80%), Positives = 431/481 (89%)
 Frame = -1

Query: 1746 VNREDVPISELLSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGFY 1567
            V+R+DVPI E    D               KINQE HSQRCD ELKLSVARKMKDEEGFY
Sbjct: 489  VDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFY 548

Query: 1566 YPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVEK 1387
            YPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGL WLKIHLANLY GGVEK
Sbjct: 549  YPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLYAGGVEK 608

Query: 1386 LSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTVV 1207
            LSYD R++FV++++  IFDSA N +NG+RWWL AEDPFQCLAAC+NLSEAL+SS+PHTV+
Sbjct: 609  LSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVI 668

Query: 1206 SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEKD 1027
            S+LPIHQDGSCNGLQHYAALGRD+ EAAAVNL+AG+KPADVYSEIA RVH IM RD+ KD
Sbjct: 669  SYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDASKD 728

Query: 1026 PATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLFS 847
            P T+P+A LAKLLI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLEEKGLI+DDRL F 
Sbjct: 729  PTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLISDDRLRFR 788

Query: 846  AACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQR 667
            A+CYAAKVTL+ALGE+F+AAR IMGWLGDCAK+IA +NQPVRWTTPLGLPVVQPY+K++R
Sbjct: 789  ASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSER 848

Query: 666  HVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVHD 487
            H+IRTSLQVLALQREG+ V+VRKQRTAFPPNFVHSLDGSHMM+TA+ACRD GLRFAGVHD
Sbjct: 849  HLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHD 908

Query: 486  SFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKVV 307
            SFWTHACDVDRMN ILR+KFV+LY+MP+LESLLE FET+YP LTFP LP RGDFDL +V+
Sbjct: 909  SFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVL 968

Query: 306  Q 304
            +
Sbjct: 969  K 969


>ref|XP_006404912.1| hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum]
            gi|557106040|gb|ESQ46365.1| hypothetical protein
            EUTSA_v10000030mg [Eutrema salsugineum]
          Length = 993

 Score =  789 bits (2038), Expect = 0.0
 Identities = 379/482 (78%), Positives = 431/482 (89%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISEL-LSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            VNREDVPI E   S+D               KIN+ERHS RCD ELKLSVARKMKDEEGF
Sbjct: 506  VNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSLRCDVELKLSVARKMKDEEGF 565

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLGKSGL WLKIHLANLY GGVE
Sbjct: 566  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLYWLKIHLANLYAGGVE 625

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLS+DGR++FVEN++  I DSA+N ++G RWWLKAEDPFQCLAAC+ L++AL+S SP++V
Sbjct: 626  KLSHDGRLAFVENHLDNIMDSAENPIHGQRWWLKAEDPFQCLAACVILTQALKSPSPYSV 685

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL+AG+KPADVYSEI+ RVH IMK+DS K
Sbjct: 686  ISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISLRVHEIMKKDSSK 745

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DP ++P+A LAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+I+D+R+LF
Sbjct: 746  DPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERMLF 805

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            SAACYAAKVTLAALGE+F+AARAIM WLGDCAKIIAS+N PVRW TPLGLPVVQPY +++
Sbjct: 806  SAACYAAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSE 865

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQREG++V+VRKQRTAFPPNFVHSLDG+HMMMTA+ACR+ GL FAGVH
Sbjct: 866  RHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVH 925

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DS+WTHACDVD MN+ILR+KFV+LYN PILE LL+SF+ SYP L FPP+P RGDFDL +V
Sbjct: 926  DSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEV 985

Query: 309  VQ 304
            ++
Sbjct: 986  LK 987


>ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
            gi|3914826|sp|O24600.1|RPOT3_ARATH RecName:
            Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
            Precursor gi|2330560|emb|CAA69972.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|2330564|emb|CAA69717.1| chloroplast
            single-subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|4115372|gb|AAD03373.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|110739160|dbj|BAF01496.1| chloroplast single
            subunit DNA-dependent RNA polymerase [Arabidopsis
            thaliana] gi|330252437|gb|AEC07531.1| DNA-directed RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 993

 Score =  788 bits (2035), Expect = 0.0
 Identities = 377/482 (78%), Positives = 431/482 (89%), Gaps = 1/482 (0%)
 Frame = -1

Query: 1746 VNREDVPISEL-LSDDXXXXXXXXXXXXXXXKINQERHSQRCDTELKLSVARKMKDEEGF 1570
            VNREDVPI E   S+D               KIN+ERHS RCD ELKLSVARKMKDEEGF
Sbjct: 506  VNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGF 565

Query: 1569 YYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYGGGVE 1390
            YYPHNLDFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLGKSGL WLKIHLANLY GGVE
Sbjct: 566  YYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVE 625

Query: 1389 KLSYDGRISFVENYIAEIFDSADNSLNGNRWWLKAEDPFQCLAACINLSEALRSSSPHTV 1210
            KLS+D R++FVEN++ +I DSA+N ++G RWWLKAEDPFQCLAAC+ L++AL+S SP++V
Sbjct: 626  KLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSV 685

Query: 1209 VSHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLIAGDKPADVYSEIAERVHNIMKRDSEK 1030
            +SHLPIHQDGSCNGLQHYAALGRDSFEAAAVNL+AG+KPADVYSEI+ RVH IMK+DS K
Sbjct: 686  ISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSK 745

Query: 1029 DPATDPSALLAKLLIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLITDDRLLF 850
            DP ++P+A LAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+ITD+R+LF
Sbjct: 746  DPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLF 805

Query: 849  SAACYAAKVTLAALGELFQAARAIMGWLGDCAKIIASENQPVRWTTPLGLPVVQPYFKTQ 670
            +AACY+AKVTLAALGE+F+AARAIM WLGDCAKIIAS+N PVRW TPLGLPVVQPY +++
Sbjct: 806  AAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSE 865

Query: 669  RHVIRTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRDGGLRFAGVH 490
            RH+IRTSLQVLALQREG++V+VRKQRTAFPPNFVHSLDG+HMMMTA+ACR+ GL FAGVH
Sbjct: 866  RHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVH 925

Query: 489  DSFWTHACDVDRMNQILRQKFVDLYNMPILESLLESFETSYPTLTFPPLPNRGDFDLNKV 310
            DS+WTHACDVD MN+ILR+KFV+LYN PILE LL+SF+ SYP L FPP+P RGDFDL +V
Sbjct: 926  DSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEV 985

Query: 309  VQ 304
            ++
Sbjct: 986  LK 987