BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00027343
         (550 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    44   8e-09
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    45   8e-09
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    49   3e-08
gb|EPS71506.1| hypothetical protein M569_03261 [Genlisea aurea]        37   2e-06
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    45   2e-06

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 43.9 bits (102), Expect(2) = 8e-09
 Identities = 27/96 (28%), Positives = 43/96 (44%)
 Frame = +3

Query: 3   GGPSTIPQIKEIWRFHHPNFIFLSETXXXXXXXSTVVRHFKCGDRWYCVDPIGLSGGLLV 182
           G   T+  ++EI   + P  IFL ET         VV H    D  + V+PIG SGGL +
Sbjct: 12  GNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDL-HTVEPIGKSGGLAL 70

Query: 183 FWDMEVDILGISDKSFCLEIEFMLHNVKSWVIFVYG 290
            W   V I  +      ++   +  + + ++  +YG
Sbjct: 71  MWKDSVQIKVLQSDKRLIDALLIWQDKEFYLTCIYG 106



 Score = 41.6 bits (96), Expect(2) = 8e-09
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +2

Query: 365 GLWVVIGMTS--LARKKKRGGRPRSNGSCAKFQDFIRSMGMKKLKFSGHPFTWSNNRADE 538
           G W++ G  +  +   +K GG  R   SC +F+  + S G+ ++  SG+ F+W  NR DE
Sbjct: 129 GPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQFSWYGNRNDE 188


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 45.1 bits (105), Expect(2) = 8e-09
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 344 KVSGVICGLWVVIGMTS--LARKKKRGGRPRSNGSCAKFQDFIRSMGMKKLKFSGHPFTW 517
           +VS    G W++ G  +  L   +K+GGR RS GS   F + I    MK LK  G+P++W
Sbjct: 484 RVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSW 543

Query: 518 SNNRADE 538
              R +E
Sbjct: 544 VGKRQNE 550



 Score = 40.4 bits (93), Expect(2) = 8e-09
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = +3

Query: 3   GGPSTIPQIKEIWRFHHPNFIFLSETXXXXXXXSTVVRHFKCGDRWYCV-DPIGLSGGLL 179
           G P T+ +++E+ R +  + +FL ET         +    K G    C+  P GLSGGL+
Sbjct: 374 GQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDL--GVKMGFEDMCIISPRGLSGGLV 431

Query: 180 VFWDMEVDILGISDKSFCLEIEFMLHNVKSWVIFVYG 290
           V+W   + I  IS     +++     N   ++  +YG
Sbjct: 432 VYWKKHLSIQVISHDVRLVDLYVEYKNFNFYLSCIYG 468


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 48.5 bits (114), Expect(2) = 3e-08
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
 Frame = +3

Query: 15  TIPQIKEIWRFHHPNFIFLSETXXXXXXXSTVV---RHFKCGDRWYCVDPIGLSGGLLVF 185
           TIP++ E+   H P  +FL ET       S VV   + +   +R + V+PIGLSGGL +F
Sbjct: 18  TIPRLMEMRLSHFPEVLFLMETKNC----SNVVVDLQEWLGYERVFTVNPIGLSGGLALF 73

Query: 186 WDMEVDI-LGISDKSFC-LEIEFMLHNVKSWVIFVYGS 293
           W   VDI +  +DK+    +I+F  H  + +V  VYG+
Sbjct: 74  WKKGVDIVIKYADKNLIDFQIQFGSH--EFYVSCVYGN 109



 Score = 35.0 bits (79), Expect(2) = 3e-08
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 371 WVVIGMTS--LARKKKRGGRPRSNGSCAKFQDFIRSMGMKKLKFSGHPFTW 517
           W ++G  +  L   +KRGG  R + S   F D + S  M +L   G+PFTW
Sbjct: 133 WCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTW 183


>gb|EPS71506.1| hypothetical protein M569_03261 [Genlisea aurea]
          Length = 793

 Score = 36.6 bits (83), Expect(3) = 2e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 428 RSNGSCAKFQDFIRSMGMKKLKFSGHPFTWSNNRA 532
           R     A F+  +   G+  +KF G P+TWSNNRA
Sbjct: 507 RPQPQMALFRSTLNDCGLLDIKFEGFPYTWSNNRA 541



 Score = 33.9 bits (76), Expect(3) = 2e-06
 Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
 Frame = +3

Query: 54  PNFIFLSETXXXXXXXSTVVRHFKCGDR---WY---------CVDPIGLSGGLLVFW--D 191
           P  IFLSET              KCG+R   W          C+D IG SGG  +FW  D
Sbjct: 383 PILIFLSET--------------KCGNRKLQWLKDGFSYFGICIDAIGASGGTALFWHKD 428

Query: 192 MEVDILGISDK 224
           + V++L  S +
Sbjct: 429 ITVNVLSYSKR 439



 Score = 25.8 bits (55), Expect(3) = 2e-06
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 298 IVDTRRNQWEYFLQNKSKWGNLWIMGGDWNDISCPEE 408
           + + R   WE   +   +    W++ GD+N++  P E
Sbjct: 464 VTNQRPEAWETLQRLSIQRSQPWLVAGDFNEVCYPSE 500


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 45.1 bits (105), Expect(2) = 2e-06
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = +3

Query: 3   GGPSTIPQIKEIWRFHHPNFIFLSETXXXXXXXSTVVRHFKCG-DRWYCVDPIGLSGGLL 179
           G  +T  +++E+ R + P F+FLSET         V      G D    V+PIG SGGL 
Sbjct: 12  GPKTTSRRLEEMCRMYSPGFLFLSETKNDLVYLQNV--QVSLGFDCLKTVEPIGNSGGLA 69

Query: 180 VFWDMEVDILGISDKSFCLEIEFMLHNVKSWVIFVYG 290
           +F+  +  +  I      ++IE ++   + ++ FVYG
Sbjct: 70  LFYSRDYPVKFIYVCDRLIDIETIIDGNRVFITFVYG 106



 Score = 32.0 bits (71), Expect(2) = 2e-06
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 371 WVVIGMTS--LARKKKRGGRPRSNGSCAKFQDFIRSMGMKKLKFSGHPFTWSNNRA 532
           W +IG  +  +   +KRGG+ RS  S   F   I + GM     +G  F+W   R+
Sbjct: 131 WFMIGDFNEIIGNHEKRGGKKRSESSFLPFCCMIENCGMIDFPSTGSLFSWVGKRS 186