BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00027144
         (490 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia...    72   1e-10
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    69   6e-10
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia...    67   3e-09
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    66   5e-09
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    65   1e-08
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...    64   2e-08
gb|EMJ25696.1| hypothetical protein PRUPE_ppa023013mg, partial [...    64   3e-08
emb|CAN78062.1| hypothetical protein VITISV_036399 [Vitis vinifera]    63   4e-08
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A...    62   6e-08
gb|EMJ18800.1| hypothetical protein PRUPE_ppa018407mg [Prunus pe...    62   6e-08
gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. ...    62   6e-08
gb|EMJ02691.1| hypothetical protein PRUPE_ppa014760mg, partial [...    62   8e-08
ref|XP_004986229.1| PREDICTED: uncharacterized protein LOC101782...    62   1e-07
emb|CAN64449.1| hypothetical protein VITISV_008912 [Vitis vinifera]    61   1e-07
gb|EMS67609.1| Alanyl-tRNA synthetase [Triticum urartu]                60   2e-07
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    60   2e-07
gb|EEC68446.1| hypothetical protein OsI_36656 [Oryza sativa Indi...    60   2e-07
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    60   2e-07
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ...    60   2e-07
ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Caps...    60   3e-07

>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 5/161 (3%)
 Frame = +1

Query: 19  TSNGIYSVQSAYQALC---SKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHFLWK 189
           TS+G Y+V+S Y  L    +K+    +  E SL+   ++                HFLWK
Sbjct: 218 TSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQ-----HFLWK 272

Query: 190 CINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMAL--VCWDGVY 363
           C++N LPV   L  R +  +S C  C   +E++ HLLF C  A+  W ++   +   G +
Sbjct: 273 CLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEW 332

Query: 364 HQALTVKEWWISICSLPWNPAFIDRINLSTYLLWWIWKTRN 486
             ++ V  +W+       NP +     L  +LLW +WK RN
Sbjct: 333 ADSIYVNLYWVFNLG-NGNPQWEKASQLVPWLLWRLWKNRN 372


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 68.9 bits (167), Expect = 6e-10
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
 Frame = +1

Query: 19   TSNGIYSVQSAYQALCSKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHFLWKCIN 198
            T  G Y+V+S Y        ++L+EG   +  ++                  HFLW+ ++
Sbjct: 792  TKAGNYTVKSGYHTA----RLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLR-HFLWQILS 846

Query: 199  NVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALV-CWDGVYHQAL 375
              +PV   L+ RG++ D  C  CG  EESI H LF C  A++IW ++ +    G++    
Sbjct: 847  GCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPS-- 904

Query: 376  TVKEWWISICSLPWN-PAFIDRINLSTYLLWWIWKTRN 486
                 + ++  L W  P+ +D      +++W+IWK RN
Sbjct: 905  --NSIFTNLDHLFWRIPSGVDSAPY-PWIIWYIWKARN 939


>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
 Frame = +1

Query: 175 HFLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWD 354
           HFLWK ++  L     LK R +     C  C +E+E+ +HL FDC  AQ++W+ +     
Sbjct: 29  HFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRAS----- 83

Query: 355 GVYHQAL--------TVKEWWISICSLPWNPAFIDRINLSTYLLWWIWKTRN 486
           G+ HQ L        T  E  +S C     P      NL+ ++LW +WK+RN
Sbjct: 84  GIPHQELRTTGITMETKMELLLSSCLANRQPQL---FNLAIWILWRLWKSRN 132


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 65.9 bits (159), Expect = 5e-09
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
 Frame = +1

Query: 25   NGIYSVQSAYQALCSKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHFLWKCINNV 204
            NG+YSV++ Y+ L SK++      E  +   +                   FLWK ++  
Sbjct: 1008 NGLYSVKTGYEFL-SKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRI-FLWKALHGA 1065

Query: 205  LPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWDG--VYHQALT 378
            +PV   L+ RG+  D  C  C  E E+I H+LF+C  A+++W +  +   G    +   T
Sbjct: 1066 IPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYT 1125

Query: 379  VKEWWISIC---SLPWNPAFIDRINLSTYLLWWIWKTRNA 489
                 I +     LP +  F+     S ++LW++WK RNA
Sbjct: 1126 NMSRLIDLTQQNDLPHHLRFV-----SPWILWFLWKNRNA 1160


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
 Frame = +1

Query: 178  FLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALV---- 345
            FLWK ++  +PV+  L  RG+ +DS C  CG E ESI+H+LF C+  +++W M+ +    
Sbjct: 906  FLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPL 965

Query: 346  -------CWDGVYHQALTVK--EWWISI-CSLPWNPAFIDRINLSTYLLWWIWKTRN 486
                    +  +YH  +     +W + +  S PW             ++W IWK RN
Sbjct: 966  LGFECGSVYANLYHFLINRDNLKWPVELRRSFPW-------------IIWRIWKNRN 1009


>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 2/158 (1%)
 Frame = +1

Query: 19  TSNGIYSVQSAYQALCSKKMMELDEGECSLDREMR-RXXXXXXXXXXXXXXXXHFLWKCI 195
           T +G YSV+S Y  L  +K+ +          E+  +                HF W+  
Sbjct: 461 THDGNYSVKSGYHLL--RKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSA 518

Query: 196 NNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMA-LVCWDGVYHQA 372
           +N LP    LK R ++ D  C  CGE  E + HLLF C  ++ IW+ A +    G    +
Sbjct: 519 HNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMS 578

Query: 373 LTVKEWWISICSLPWNPAFIDRINLSTYLLWWIWKTRN 486
            +  +   SI  L  N +    ++L  ++ W IWK RN
Sbjct: 579 NSFNQNLESIQKL--NQSARKDVSLFPFIGWRIWKMRN 614


>gb|EMJ25696.1| hypothetical protein PRUPE_ppa023013mg, partial [Prunus persica]
          Length = 607

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 35/108 (32%), Positives = 49/108 (45%)
 Frame = +1

Query: 19  TSNGIYSVQSAYQALCSKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHFLWKCIN 198
           T+NGIYSV+S Y+   SKK         S    +R                 +F W+ I 
Sbjct: 306 TTNGIYSVKSGYRLEMSKKKECSGVVGSSSKPRVRNAFWRKVWSQEVRQKILYFNWRAIK 365

Query: 199 NVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMAL 342
           N LP +S +  R ++ D  C  C    ES+ H L+ C  AQ++WK  L
Sbjct: 366 NYLPCISNMLKRKIIYDDSCPICNVNSESVIHALWSCPNAQKVWKKVL 413


>emb|CAN78062.1| hypothetical protein VITISV_036399 [Vitis vinifera]
          Length = 522

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 8/170 (4%)
 Frame = +1

Query: 1   RLV*KITSNGIYSVQSAYQALCSKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHF 180
           R++ K+TSNG +SV+S Y  L S++      G                           F
Sbjct: 327 RMMWKVTSNGSFSVRSLYNDLSSRRAGFFPHG--------------LIWNPSVPSKVCFF 372

Query: 181 LWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMAL----VC 348
            W+     +  M  LK RG  V + C  C EEEESI+H+L  C+KA+ +W +      VC
Sbjct: 373 AWEASWGKVLTMDQLKKRGXAVVNRCFLCCEEEESIDHILIHCSKARELWDLLFALFGVC 432

Query: 349 WDGVYHQALTVKEWWISIC----SLPWNPAFIDRINLSTYLLWWIWKTRN 486
           W        T+ EW   +     S  W  A          L W +W  RN
Sbjct: 433 WVLPSSARETLVEWRGFMLGKKHSKVWKAA-------PLCLFWAVWMERN 475


>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 968

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
 Frame = +1

Query: 178 FLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWDG 357
           FLW+  +  LP +  L  R +   S C  CGE EE++ H L  C  A+++WK     W G
Sbjct: 656 FLWRACHAFLPCVERLFKRNICSHSGCGRCGEGEETVVHSLCWCRVAKKVWKCTY--WRG 713

Query: 358 VYHQALTVKEWWIS----ICSLPWNPAFIDRINLSTYLLWWIWKTRN 486
           VY      K W IS    +  L      I    L   + WW+WK RN
Sbjct: 714 VY------KSWQISSFADLFGLVAMEGNIKNTELFALICWWLWKDRN 754


>gb|EMJ18800.1| hypothetical protein PRUPE_ppa018407mg [Prunus persica]
          Length = 356

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 34/108 (31%), Positives = 50/108 (46%)
 Frame = +1

Query: 19  TSNGIYSVQSAYQALCSKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHFLWKCIN 198
           T+NGIYS++S Y+   SKK         SL+  ++                 +F W+ I 
Sbjct: 24  TTNGIYSLKSGYRLEISKKKDCSGAVGSSLEPRVQNAFWRKVWSQEVPQKILYFNWRAIK 83

Query: 199 NVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMAL 342
           N LP  S L  R ++ +  C  C    ES+ H L+ C  AQ++WK  L
Sbjct: 84  NYLPCRSNLLKRKIISEDSCPICNVNSESVIHALWSCPNAQKVWKKVL 131


>gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 1555

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
 Frame = +1

Query: 178  FLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWDG 357
            F+WK +   +PV   L  R + +D  C  CG  E SI HLLF C  AQR+W +A +    
Sbjct: 1263 FVWKVLKGAVPVGERLLERHIDIDPRCKRCGSNE-SITHLLFHCQFAQRVWHLAPLATAP 1321

Query: 358  VYHQALTVKEWWISICSL-PWNPAFIDRINLSTYLLWWIWKTRN 486
             +   + +   W ++ +L    P  I   NL  ++ W IWK RN
Sbjct: 1322 DFRGMIDLMADWPALSNLKALPPTGIASGNLVPWIFWNIWKARN 1365


>gb|EMJ02691.1| hypothetical protein PRUPE_ppa014760mg, partial [Prunus persica]
          Length = 450

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 34/108 (31%), Positives = 49/108 (45%)
 Frame = +1

Query: 19  TSNGIYSVQSAYQALCSKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHFLWKCIN 198
           T+NGIYSV+S Y+   SKK         S +  ++                 +F W+ I 
Sbjct: 105 TTNGIYSVKSGYRLEISKKKDCSGAVGSSSEPRVQNAFWRKVWSQEVPQKILYFTWRAIK 164

Query: 199 NVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMAL 342
           N LP  S L  R ++ +  C  C    ES+ H L+ C  AQ++WK  L
Sbjct: 165 NYLPCRSNLLKRKIISEDSCPICNVNSESVIHALWSCPNAQKVWKKVL 212


>ref|XP_004986229.1| PREDICTED: uncharacterized protein LOC101782020 [Setaria italica]
          Length = 190

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 36/104 (34%), Positives = 56/104 (53%)
 Frame = +1

Query: 175 HFLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWD 354
           HFLW    + LP  + L+ R ++    C +CG  E+  +HLL  C +A+RIW+  L+ W 
Sbjct: 42  HFLWLVHRHRLPSAALLRHRNIIDSPSCTFCGAHEDQ-DHLLLRCNRARRIWR--LLGWP 98

Query: 355 GVYHQALTVKEWWISICSLPWNPAFIDRINLSTYLLWWIWKTRN 486
            V + + + +E W ++  LP       R  + T +LW IWK RN
Sbjct: 99  SVPYLS-SFRELW-TLPELPDGTVPSARSAILTAILWHIWKGRN 140


>emb|CAN64449.1| hypothetical protein VITISV_008912 [Vitis vinifera]
          Length = 496

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
 Frame = +1

Query: 1   RLV*KITSNGIYSVQSAYQALCSKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHF 180
           R++ K+TSNGI+SV+S Y  L S++      G                           F
Sbjct: 301 RMMWKVTSNGIFSVKSLYNDLSSRRAGPFPHG--------------LIWSPSVPSKVSFF 346

Query: 181 LWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWDGV 360
            WK     +  M  LK RG  + + C  C EEEESI+H+L  C++A+ +W++    + GV
Sbjct: 347 AWKASWGKVLTMDQLKKRGWALANRCFLCCEEEESIDHILIHCSRARALWELLFALF-GV 405

Query: 361 YHQALTVKEWWISICS-----LPWNPAFIDRINLSTY------LLWWIWKTRN 486
           +         W+   S     + W    + + +   +      L W +W  RN
Sbjct: 406 F---------WVLPSSARDTLIEWRGFMLGKKHRKVWKAAPLCLFWAVWMERN 449


>gb|EMS67609.1| Alanyl-tRNA synthetase [Triticum urartu]
          Length = 1858

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
 Frame = +1

Query: 25   NGIYSVQSAYQALCSK-KMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXHFLWKCINN 201
            +G YS++SAY+AL ++ + + L+EG  +      +                 F W+ ++ 
Sbjct: 1503 SGCYSIKSAYRALMTRNEHLALEEGTITETSSTDKQLWSRLWKLKVLPRVRVFWWRVLHG 1562

Query: 202  VLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWDGVYHQALTV 381
            +LP  S L  R +     C  C   EE ++H L DC  A+R W  A   W  +    L  
Sbjct: 1563 ILPAESTLMHRHITTIGTCKLCLHAEEDMKHALLDCTHARRFWN-AAPDWLDIKRPELHP 1621

Query: 382  KEWWISICSLPWNPAF--IDRINLSTYLLWWIWKTRN 486
              W   +     +P F   +R  L T ++W IW +RN
Sbjct: 1622 LTWSRDVLC---DPMFSESERAKLVT-VMWAIWTSRN 1654


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
 Frame = +1

Query: 178  FLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWDG 357
            FLW+ +++ LPV   +  RG+ +D  C  CGEE ESI H+LF C+ A+++W ++ V    
Sbjct: 1060 FLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQ 1119

Query: 358  VYHQALTVKEWWISICSLPWNPAFIDRINLS-TYLLWWIWKTRN 486
               Q  ++      +  L       ++I  S  ++LW +WK R+
Sbjct: 1120 FGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRD 1163


>gb|EEC68446.1| hypothetical protein OsI_36656 [Oryza sativa Indica Group]
          Length = 314

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 4/157 (2%)
 Frame = +1

Query: 28  GIYSVQSAYQALCSKKMMELDEGECSLDREMRRXXXXXXXXXXXXXXXXH-FLWKCINNV 204
           G +SV+S Y  + S      + G+CS   E+                    F WK I+N 
Sbjct: 24  GKFSVRSVYHLVVSLA----ETGDCSSSTEVLVNKSWKRIWACNVPQKVRIFAWKAISNS 79

Query: 205 LPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWDGVYH---QAL 375
           LP M   K R + + S CC CG EEE + H L  C +A+ +W  A+     + H    A 
Sbjct: 80  LPTMKNKKKRNLELLSTCCICGAEEEDVAHALCHCQQARNLWS-AMYSARAISHDVNSAW 138

Query: 376 TVKEWWISICSLPWNPAFIDRINLSTYLLWWIWKTRN 486
           +  +W +++  L   P   D + L   L+W IW  RN
Sbjct: 139 SGTDWILNL--LEVLPKEEDAMFL--MLMWRIWHNRN 171


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
 Frame = +1

Query: 175  HFLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWD 354
            HF W+C++  L     L  R +  + +C  CG EEESI HLLF C  +++IW ++     
Sbjct: 937  HFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALS----- 991

Query: 355  GVYHQALTVKEWWISICSLPWNPAFI-----------DRINLSTYLLWWIWKTRN 486
                  +   E+     SL +N  F+           D + +  ++LW+IWK+RN
Sbjct: 992  -----PIPSSEYIFPRNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRN 1041


>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3184275|gb|AAC18922.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
           H domain-containing protein [Arabidopsis thaliana]
          Length = 365

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +1

Query: 175 HFLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWD 354
           HFLW+C+   L   + L+ R +  D +C  C  EEE+I H++F+C   Q +W+ A +   
Sbjct: 48  HFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIG 107

Query: 355 GVYHQALTVKEWWISICSLPWNPA--FIDRINLSTYLLWWIWKTRN 486
             +    + ++    +  L        +DR  L  +++W +WK+RN
Sbjct: 108 NQWGPPSSFEDNLNRLIQLSKTQTTNSLDRF-LPFWIMWRLWKSRN 152


>ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Capsella rubella]
           gi|482548097|gb|EOA12297.1| hypothetical protein
           CARUB_v10007977mg [Capsella rubella]
          Length = 417

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 29/103 (28%), Positives = 50/103 (48%)
 Frame = +1

Query: 178 FLWKCINNVLPVMSCLKMRGVVVDSMCCWCGEEEESIEHLLFDCAKAQRIWKMALVCWDG 357
           F W+ ++  + V  CL+  G+  + +C  C  EEE+I H+LF C  AQ++W ++ +    
Sbjct: 103 FFWRVLSGAIAVSECLRRHGINTNPLCQVCKVEEETISHVLFGCQLAQQVWSVSGLPIPA 162

Query: 358 VYHQALTVKEWWISICSLPWNPAFIDRINLSTYLLWWIWKTRN 486
               + TV+        +  +   +       +LLW IWK RN
Sbjct: 163 NGFSSSTVENVEYCFMIMGKSEVSLQSRQAIPWLLWEIWKARN 205