BLASTX nr result
ID: Rehmannia24_contig00027102
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia24_contig00027102
(403 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polyme... 108 1e-23
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera] 98 1e-22
ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citr... 101 9e-22
ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citr... 101 9e-22
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme... 103 9e-22
ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polyme... 95 4e-21
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme... 96 4e-21
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme... 98 8e-21
ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme... 98 1e-20
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid... 96 2e-20
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana] 96 2e-20
gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial ... 93 2e-20
ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutr... 95 5e-20
ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polyme... 94 1e-19
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ... 93 1e-19
gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus no... 99 4e-19
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 89 5e-19
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid... 87 2e-18
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 82 9e-18
ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Caps... 86 2e-17
>ref|XP_006338861.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 911
Score = 108 bits (271), Expect(2) = 1e-23
Identities = 59/110 (53%), Positives = 75/110 (68%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLAM CPKDF A+YI D ++E FVD ++ ++R + + N+EPPLLMQCRLF +
Sbjct: 426 SEDLAMHCPKDFVKAEYIKDENYEN---FVDIVDLDAERRESVSWNREPPLLMQCRLFFN 482
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVNIRY 73
G AVKGT LVN+K+ I IRPSM+KV D TF+SLEIV I +
Sbjct: 483 GCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPAISSIPTFDSLEIVAISH 532
Score = 26.2 bits (56), Expect(2) = 1e-23
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SK LI+LL+YGGV +E+
Sbjct: 540 SKNLISLLSYGGVQKEY 556
>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 98.2 bits (243), Expect(2) = 1e-22
Identities = 52/105 (49%), Positives = 69/105 (65%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA++CP + KY+ + + ++ V+ E + R E EPPLL+QCRLF++
Sbjct: 675 SEDLALRCPNNLCRGKYMXNGNSDRLVGNVELEGKFSELRCLETHTWEPPLLIQCRLFNN 734
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEI 88
G AVKGTLL+N+KL P TIQIRPSMIKV D +T NS+EI
Sbjct: 735 GCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEI 779
Score = 33.5 bits (75), Expect(2) = 1e-22
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SKYLIALL+YGGVP E+
Sbjct: 792 SKYLIALLSYGGVPNEY 808
>ref|XP_006451271.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843309|ref|XP_006475556.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X1 [Citrus
sinensis] gi|557554497|gb|ESR64511.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1015
Score = 101 bits (251), Expect(2) = 9e-22
Identities = 58/106 (54%), Positives = 68/106 (64%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA+KCP K D+S E+ + E TE+ EPPLLMQ RLF++
Sbjct: 422 SEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYN 481
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
G AVKGTLL+NKKL P TIQIRPSMIKV DR +TFNSLE+V
Sbjct: 482 GTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 527
Score = 27.7 bits (60), Expect(2) = 9e-22
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ LIALL+YGGVP+ F
Sbjct: 539 SRNLIALLSYGGVPEIF 555
>ref|XP_006451272.1| hypothetical protein CICLE_v10007331mg [Citrus clementina]
gi|568843311|ref|XP_006475557.1| PREDICTED: probable
RNA-dependent RNA polymerase 3-like isoform X2 [Citrus
sinensis] gi|557554498|gb|ESR64512.1| hypothetical
protein CICLE_v10007331mg [Citrus clementina]
Length = 1013
Score = 101 bits (251), Expect(2) = 9e-22
Identities = 58/106 (54%), Positives = 68/106 (64%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA+KCP K D+S E+ + E TE+ EPPLLMQ RLF++
Sbjct: 420 SEDLALKCPTYVYKEKCTNDDSTERSIDRKELEANFSDVARTESHYGEPPLLMQVRLFYN 479
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
G AVKGTLL+NKKL P TIQIRPSMIKV DR +TFNSLE+V
Sbjct: 480 GTAVKGTLLLNKKLPPQTIQIRPSMIKVKADRDLSDGQTFNSLEVV 525
Score = 27.7 bits (60), Expect(2) = 9e-22
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ LIALL+YGGVP+ F
Sbjct: 537 SRNLIALLSYGGVPEIF 553
>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 1011
Score = 103 bits (256), Expect(2) = 9e-22
Identities = 56/110 (50%), Positives = 73/110 (66%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLAM CPKDFS A+YI D ++E VD ++V ++R + +RN++P CRLF +
Sbjct: 426 SEDLAMHCPKDFSKAEYIKDENYENFVDIVDLDDVNVERRVSVSRNRKP-----CRLFFN 480
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVNIRY 73
G AVKGT LVN+K+ I IRPSM+KV D T TF+SLEIV I +
Sbjct: 481 GCAVKGTFLVNRKIGSRKIHIRPSMVKVEIDPTISSIPTFDSLEIVAISH 530
Score = 25.8 bits (55), Expect(2) = 9e-22
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SK LI+LL+YGGV +E+
Sbjct: 538 SKNLISLLSYGGVHKEY 554
>ref|XP_004513037.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cicer
arietinum]
Length = 997
Score = 95.1 bits (235), Expect(2) = 4e-21
Identities = 48/107 (44%), Positives = 67/107 (62%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA+ CP + + + ++ V E+++ +PPLL+QCRLFH
Sbjct: 406 SEDLAVLCPNNVLKGSNLKNTHIKEISNLVKLEDMSKAMGEAALSKHQPPLLIQCRLFHM 465
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVN 82
G A+KGTLLVNKKL P TIQ+RPSMIKV+ D + ++ NS+E+VN
Sbjct: 466 GCAMKGTLLVNKKLSPSTIQVRPSMIKVMTDPSLSNIQSLNSMEVVN 512
Score = 31.6 bits (70), Expect(2) = 4e-21
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SKYLIALL+YG VP EF
Sbjct: 523 SKYLIALLSYGRVPNEF 539
>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 988
Score = 95.5 bits (236), Expect(2) = 4e-21
Identities = 50/107 (46%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVA-FQKRGTEARNKEPPLLMQCRLFH 226
S DLA+ CP + + +N ++ + V+ E+++ + EPPLL+QCRLFH
Sbjct: 396 SRDLALLCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTHEPPLLIQCRLFH 455
Query: 225 DGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
G+A+KGTLLVN+KL P TIQ+RPSMIKV KD + M ++ NSLE+V
Sbjct: 456 MGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPSVHM-QSINSLEVV 501
Score = 31.2 bits (69), Expect(2) = 4e-21
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SK+LIALL++GGVP EF
Sbjct: 513 SKHLIALLSFGGVPNEF 529
>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
vesca subsp. vesca]
Length = 1405
Score = 98.2 bits (243), Expect(2) = 8e-21
Identities = 53/106 (50%), Positives = 69/106 (65%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA+ CPK + ++I+D + + ++ + G R +EPPLL+QCRLFH+
Sbjct: 819 SEDLALLCPKIEAKGQWISDEHMKGLPDPDELDDTGKNRAGL--RTEEPPLLIQCRLFHN 876
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
G A KGTLLVNKKL+P IQIRPSM+KV D +T NSLEIV
Sbjct: 877 GSASKGTLLVNKKLQPNRIQIRPSMLKVKTDPVISNNQTLNSLEIV 922
Score = 27.7 bits (60), Expect(2) = 8e-21
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ LIALL +GGVP+EF
Sbjct: 934 SRILIALLVHGGVPEEF 950
>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
tuberosum]
Length = 1110
Score = 97.8 bits (242), Expect(2) = 1e-20
Identities = 56/105 (53%), Positives = 68/105 (64%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA KCP+DF K+ N E++ V + + E ++ EPPLLMQCRLF++
Sbjct: 507 SEDLARKCPQDFFNVKHRCAN-LERYTNGVKLGENSSELGEAEFQSGEPPLLMQCRLFYN 565
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEI 88
G AVKGTLLVN+KL TIQIRPSMIKV D + FNSLEI
Sbjct: 566 GLAVKGTLLVNRKLPRRTIQIRPSMIKVEADPRLSRAQMFNSLEI 610
Score = 27.7 bits (60), Expect(2) = 1e-20
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ LIALL YGGVP E+
Sbjct: 623 SRTLIALLTYGGVPVEY 639
>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
polymerase 3 [Arabidopsis thaliana]
Length = 992
Score = 96.3 bits (238), Expect(2) = 2e-20
Identities = 52/106 (49%), Positives = 69/106 (65%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA CP + K + N+ + +N+ F+ +G +EPPLL+Q R+F++
Sbjct: 410 SEDLARMCPVNIFKGKSMRSNNIQS-------KNLNFEGQGP--CGQEPPLLIQFRIFYN 460
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
GYAVKGT L NKKL P T+Q+RPSMIKV +DRT TFNSLE+V
Sbjct: 461 GYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVV 506
Score = 28.5 bits (62), Expect(2) = 2e-20
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ L+ALL+YGGVP +F
Sbjct: 518 SRNLVALLSYGGVPNDF 534
>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 96.3 bits (238), Expect(2) = 2e-20
Identities = 52/106 (49%), Positives = 69/106 (65%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA CP + K + N+ + +N+ F+ +G +EPPLL+Q R+F++
Sbjct: 384 SEDLARMCPVNIFKGKSMRSNNIQS-------KNLNFEGQGP--CGQEPPLLIQFRIFYN 434
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
GYAVKGT L NKKL P T+Q+RPSMIKV +DRT TFNSLE+V
Sbjct: 435 GYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVV 480
Score = 28.5 bits (62), Expect(2) = 2e-20
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ L+ALL+YGGVP +F
Sbjct: 492 SRNLVALLSYGGVPNDF 508
>gb|ESW24973.1| hypothetical protein PHAVU_004G1764001g, partial [Phaseolus
vulgaris]
Length = 689
Score = 93.2 bits (230), Expect(2) = 2e-20
Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEAR--NKEPPLLMQCRLF 229
S DLA+ CP + +N ++ + ++ E++ + TE + +PPLL+QCRLF
Sbjct: 381 SGDLALLCPNSVCKGNNLENNYIQEINNLLELEDMCKEMGETELKLTTHQPPLLIQCRLF 440
Query: 228 HDGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVN 82
H G A+KGTLLVNKKL P TI +RPSMIKV D + M ++ NSLEIVN
Sbjct: 441 HMGSAIKGTLLVNKKLPPRTIHVRPSMIKVETDLSLNM-QSINSLEIVN 488
Score = 31.2 bits (69), Expect(2) = 2e-20
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SK LIALL+YGGVP EF
Sbjct: 499 SKNLIALLSYGGVPNEF 515
>ref|XP_006408907.1| hypothetical protein EUTSA_v10001896mg [Eutrema salsugineum]
gi|557110063|gb|ESQ50360.1| hypothetical protein
EUTSA_v10001896mg [Eutrema salsugineum]
Length = 988
Score = 94.7 bits (234), Expect(2) = 5e-20
Identities = 52/107 (48%), Positives = 65/107 (60%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA CP D K I ++ + V+ + KEPPLL+Q R+F+D
Sbjct: 391 SEDLARMCPTDIFKGKCIGIDNIQSKIPNVEAQGTC---------GKEPPLLIQFRMFYD 441
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVN 82
GYAVKGT L+NKKL T+Q+RPSMIKV D+T TFNSLE+VN
Sbjct: 442 GYAVKGTFLLNKKLPDRTVQVRPSMIKVYNDQTLSNFSTFNSLEVVN 488
Score = 28.5 bits (62), Expect(2) = 5e-20
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ L+ALL+YGGVP +F
Sbjct: 499 SRNLVALLSYGGVPNDF 515
>ref|XP_004251631.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
lycopersicum]
Length = 759
Score = 94.4 bits (233), Expect(2) = 1e-19
Identities = 55/105 (52%), Positives = 66/105 (62%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA KCP+DF K+ N ++ V + + E ++ EPPLLMQCRLF++
Sbjct: 451 SEDLARKCPQDFFNVKHKCAN-LVRYANGVKLGENSSELGEAEFQSGEPPLLMQCRLFYN 509
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEI 88
G AVKGTLLVN+KL TIQIRPSMIKV D FNSLEI
Sbjct: 510 GLAVKGTLLVNRKLPQRTIQIRPSMIKVEADPRLSRAHMFNSLEI 554
Score = 27.7 bits (60), Expect(2) = 1e-19
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ LIALL YGGVP E+
Sbjct: 567 SRTLIALLTYGGVPVEY 583
>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 934
Score = 93.2 bits (230), Expect(2) = 1e-19
Identities = 50/106 (47%), Positives = 65/106 (61%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA CP + K + N+ + ++ G +EPPLL+Q R+FH+
Sbjct: 435 SEDLARMCPVNIFKGKSMRSNNIQSKIPNIE---------GQGPCGQEPPLLIQFRMFHN 485
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
GYAVKGT L NKKL P T+Q+RPSMIKV +D+T TFNSLE+V
Sbjct: 486 GYAVKGTFLTNKKLPPWTVQVRPSMIKVNEDQTMSNFSTFNSLEVV 531
Score = 28.5 bits (62), Expect(2) = 1e-19
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ L+ALL+YGGVP +F
Sbjct: 543 SRNLVALLSYGGVPNDF 559
>gb|EXB59781.1| putative RNA-dependent RNA polymerase 4 [Morus notabilis]
Length = 529
Score = 99.4 bits (246), Expect = 4e-19
Identities = 61/113 (53%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFE-KHDQFVDFENVA-FQKRGTEARNKEPPLLMQCRLF 229
SEDLA+ CPK+ K I DN+ E H+Q ENVA GTE EPP+L+Q R+F
Sbjct: 391 SEDLALLCPKNLEKWKRINDNNIEIMHNQDGHVENVAEMGHHGTETL--EPPMLIQFRMF 448
Query: 228 HDGYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVNIRYL 70
+ G AVKGT LVNKKLEP TI+IR SM+KV DR + +T +SLEIV R L
Sbjct: 449 NKGRAVKGTFLVNKKLEPKTIKIRHSMVKVEPDRKLLINQTSDSLEIVGTRCL 501
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 89.4 bits (220), Expect(2) = 5e-19
Identities = 49/106 (46%), Positives = 64/106 (60%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA CP + K + + + EA N++PPLL+Q R+F+D
Sbjct: 410 SEDLARMCPLNIFKGKCLRSENIQ------------------EACNQDPPLLIQFRMFYD 451
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
GYAVKGT L+NKKL P T+Q+RPSMIKV KD + TFN+LE+V
Sbjct: 452 GYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVV 497
Score = 30.4 bits (67), Expect(2) = 5e-19
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SK L+ALL+YGG+P EF
Sbjct: 509 SKNLVALLSYGGIPNEF 525
>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
polymerase 5 [Arabidopsis thaliana]
Length = 977
Score = 87.4 bits (215), Expect(2) = 2e-18
Identities = 49/106 (46%), Positives = 63/106 (59%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA CP + K + S + EA ++PPLL+Q R+F+D
Sbjct: 406 SEDLARMCPLNIFKGKCLRSESIQ------------------EACYQDPPLLIQFRMFYD 447
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIV 85
GYAVKGT L+NKKL P T+Q+RPSMIKV KD + TFN+LE+V
Sbjct: 448 GYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVV 493
Score = 30.4 bits (67), Expect(2) = 2e-18
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SK L+ALL+YGG+P EF
Sbjct: 505 SKNLVALLSYGGIPNEF 521
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 82.0 bits (201), Expect(2) = 9e-18
Identities = 47/105 (44%), Positives = 61/105 (58%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA++CP + KY+ + + + D PLL+QCRLF++
Sbjct: 372 SEDLALRCPNNLCRGKYMNNGNSDVCDS-------------------RYPLLIQCRLFNN 412
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEI 88
G AVKGTLL+N+KL P TIQIRPSMIKV D +T NS+EI
Sbjct: 413 GCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEI 457
Score = 33.5 bits (75), Expect(2) = 9e-18
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
SKYLIALL+YGGVP E+
Sbjct: 470 SKYLIALLSYGGVPNEY 486
>ref|XP_006296898.1| hypothetical protein CARUB_v10012890mg [Capsella rubella]
gi|482565607|gb|EOA29796.1| hypothetical protein
CARUB_v10012890mg [Capsella rubella]
Length = 998
Score = 85.9 bits (211), Expect(2) = 2e-17
Identities = 50/107 (46%), Positives = 63/107 (58%)
Frame = -2
Query: 402 SEDLAMKCPKDFSAAKYITDNSFEKHDQFVDFENVAFQKRGTEARNKEPPLLMQCRLFHD 223
SEDLA CP + K I N+ +GT ++PPLL+Q R+F+
Sbjct: 423 SEDLARMCPINIFKGKSIRSNNI----------------KGT--CGEDPPLLIQFRMFYK 464
Query: 222 GYAVKGTLLVNKKLEPGTIQIRPSMIKVVKDRTSPMKETFNSLEIVN 82
GYAVKGT L NKKL P T+Q+RPSMIKV +D+ TFNSLE+VN
Sbjct: 465 GYAVKGTFLSNKKLPPQTVQVRPSMIKVYEDQALLNFSTFNSLEVVN 511
Score = 28.9 bits (63), Expect(2) = 2e-17
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 52 SKYLIALLNYGGVPQEF 2
S+ LIALL+YGGVP +F
Sbjct: 522 SRNLIALLSYGGVPNDF 538