BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00022503
         (964 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    89   3e-15
gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [...    82   3e-13
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    82   3e-13
ref|XP_006487438.1| PREDICTED: putative ribonuclease H protein A...    81   5e-13
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ...    80   9e-13
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia...    79   2e-12
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta...    79   3e-12
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta...    77   8e-12
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626...    76   2e-11
gb|AFK38936.1| unknown [Medicago truncatula]                           76   2e-11
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    76   2e-11
ref|NP_172471.1| ribonuclease H-like protein [Arabidopsis thalia...    75   4e-11
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    75   4e-11
gb|AAC34342.1| Hypothetical protein [Arabidopsis thaliana]             75   4e-11
ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein A...    74   8e-11
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    74   8e-11
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia...    73   1e-10
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    73   1e-10
ref|XP_006491602.1| PREDICTED: uncharacterized protein LOC102623...    72   4e-10
gb|EMJ04273.1| hypothetical protein PRUPE_ppa023544mg, partial [...    72   4e-10

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 88.6 bits (218), Expect = 3e-15
 Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 4/293 (1%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAP--I 175
            K F W+   + L     ++KRGM  D  C  CGE+ ET  H+ + C  +   W ++P  I
Sbjct: 1064 KLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRI 1123

Query: 176  SWKKPETGTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCKMPEKEL 355
                 E G+ F +W  ++   ++ +   +  +L   I W +W  RN WVF+K K+  +E+
Sbjct: 1124 HTGNIEAGS-FRIWVESLLDTHKDT---EWWALFWMICWNIWLGRNKWVFEKKKLAFQEV 1179

Query: 356  VDLAYSEWYEFNSMGSNIIRREACTAIPI-GLHNKKSEYSL-DVGHIEIFVSALWRKDRK 529
            V+ A     EF          E     P+  L+  ++ +S+  VG +++ V A   K   
Sbjct: 1180 VERAVRGVMEF--------EEECAHTSPVETLNTHENGWSVPPVGMVKLNVDAAVFKHVG 1231

Query: 530  TGWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFNIDKEEM 709
             G G + ++ EG ++ +          P  A   ++R G  +A+   ++N++  +D +++
Sbjct: 1232 IGMGGVVRDAEGDVLLATCCGGWAMEDPAMAEACSLRYGLKVAYEAGFRNLVVEMDCKKL 1291

Query: 710  VVKLTQKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECNVACLQLATSACN 868
             ++L  K         + +DI  L     +  F+ V + CN     LA    N
Sbjct: 1292 FLQLRGKASDVTPFGRVVDDILYLASKCSNVVFEHVKRHCNKVAHLLAQMCKN 1344


>gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
          Length = 920

 Score = 82.0 bits (201), Expect = 3e-13
 Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 7/259 (2%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
            K FLWR     LPT   L +R +     C  C +  E+E H  F C   Q VW  +P+++
Sbjct: 617  KFFLWRMMVRALPTKLNLYRRRIISSPFCPICNQYEESEEHAIFLCPWTQAVWFGSPLNY 676

Query: 182  K-KPETGTRFCVWWSNICALNQSSFGKDR----ISLSTYILWWLWKSRNLWVFQKCKMPE 346
            +  P++ T F  W++ +  LN   F K      +SL ++I W +WK+R  ++F+   +  
Sbjct: 677  RVNPQSITTFDRWFTGL--LNSQMFSKSERVWVLSLVSFISWEIWKARCKFLFEDITIDP 734

Query: 347  KELVDLAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYSLDV--GHIEIFVSALWRK 520
            + +V+ A S   EF+ +     R E  T    G+ ++ ++       G I+I   A W K
Sbjct: 735  RCVVERAASAAEEFDVLR----RHEISTRNGAGVFSQPTDIWKPPVNGAIKINFDAAW-K 789

Query: 521  DRKTGWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFNIDK 700
            + + G G + +N        + AS+  CNS + A   A  +    A    +  I    D 
Sbjct: 790  NHEAGLGVVMRNHNKDFCYGF-ASKRCCNSALNAETEAAIEALRCASLRGYSKIEMESDS 848

Query: 701  EEMVVKLTQKFPFEKENVC 757
            + ++  +       K NVC
Sbjct: 849  KVLIDSI-------KGNVC 860


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 82.0 bits (201), Expect = 3e-13
 Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 3/208 (1%)
 Frame = +2

Query: 8    FLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISWKK 187
            FLW+     +P   +L+ RG++ D+ C  C  E ET  HI F C  A+ VW +  +S   
Sbjct: 1057 FLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAG 1116

Query: 188  PETGTRFCVWWSNICALNQSSFGKDRIS-LSTYILWWLWKSRNLWVFQKCKMPEKELVDL 364
             E         S +  L Q +     +  +S +ILW+LWK+RN  +F+        LVD 
Sbjct: 1117 SEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDK 1176

Query: 365  AYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYSLDV-GHIEIFVSALWRKDRK-TGW 538
            AY  ++E+ S  +++   E         H K +++   + G ++  +   W K    +G 
Sbjct: 1177 AYEAYHEWFSAQTHMQNDEK--------HLKITKWCPPLPGELKCNIGFAWSKQHHFSGA 1228

Query: 539  GCIAKNQEGKIIKSWNASRDDCNSPVEA 622
              + ++ +GK++     S ++ +SP  A
Sbjct: 1229 SWVVRDSQGKVLLHSRRSFNEVHSPYSA 1256


>ref|XP_006487438.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 335

 Score = 81.3 bits (199), Expect = 5e-13
 Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 14/301 (4%)
 Frame = +2

Query: 2   KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPI-- 175
           K F+W+  +++LPTA  L KRG+ ++  C+ CG ++E  +H+   C  A+ VW+ +P+  
Sbjct: 30  KIFVWKATKNLLPTAENLCKRGIVQEAHCKRCGNKVENILHVLVTCKAAKKVWQRSPVAD 89

Query: 176 SWKKPETGTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCK------ 337
           +  K ++   F      +  L Q S   D   L   +LW +W +RN +VF+  K      
Sbjct: 90  AVHKIDSSNLF----GELTKL-QRSLSNDDFELLLVLLWIIWYARNKFVFEGMKIDPGIS 144

Query: 338 MPEKELVDLAYSEWYEFNSM--GSNIIRREACTAIPIGLHNKKSEYSLDVGHIEIFVSAL 511
           + + E +  AY    +F  M  G N +R+E     P      K              +A+
Sbjct: 145 VAKAEAIKEAYKR-TQFPEMLVGKNSLRQEQNKWAPPPPRWVKINVD----------AAI 193

Query: 512 WRKDRKTGWGCIAKNQEGK----IIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKN 679
             K + +G G + K+  GK     +KS  +  D   +  EA  +    G  +A  E  + 
Sbjct: 194 DAKSKCSGLGAVIKDPSGKCFVAAVKSVTSKGDVLLAEAEADEW----GTYLAKEEGMQA 249

Query: 680 IIFNIDKEEMVVKLTQKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECNVACLQLATS 859
           +I   D +  V  +     +  E   +  DI  L+  F     K + + CN    +LA  
Sbjct: 250 VILETDSKATVDLINNNGNYMTEVHWIISDIQSLMSQFSHFVAKFIPRSCNTCAHKLAKI 309

Query: 860 A 862
           A
Sbjct: 310 A 310


>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3184275|gb|AAC18922.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
           H domain-containing protein [Arabidopsis thaliana]
          Length = 365

 Score = 80.5 bits (197), Expect = 9e-13
 Identities = 50/126 (39%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
 Frame = +2

Query: 2   KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPI-- 175
           KHFLWRC    L T  +L+ R +  D ICQ C  E ET  HI F+C   Q VW+ A I  
Sbjct: 47  KHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIII 106

Query: 176 --SWKKPETGTRFCVWWSNICALNQSSFGKDRISLSTY----ILWWLWKSRNLWVF-QKC 334
              W  P +      +  N+  L Q S  +   SL  +    I+W LWKSRN+++F QKC
Sbjct: 107 GNQWGPPSS------FEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKC 160

Query: 335 KMPEKE 352
           + P+ E
Sbjct: 161 QSPDYE 166


>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
            gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
            thaliana] gi|7269807|emb|CAB79667.1| putative protein
            [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
            putative reverse transcriptase/RNA-dependent DNA
            polymerase [Arabidopsis thaliana]
            gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
            [Arabidopsis thaliana]
          Length = 575

 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 75/300 (25%), Positives = 133/300 (44%), Gaps = 16/300 (5%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLA---- 169
            +HFLW+C  + LP A  L  R + K+  C  C    ET  H+ F CT A++ W ++    
Sbjct: 267  QHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPI 326

Query: 170  PISWKKPETGTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCKMPEK 349
            P+  +  ++      W  N+   N +   +    L  ++LW LWK+RN  VF+  +   +
Sbjct: 327  PLGGEWADSIYVNLYWVFNLG--NGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQ 384

Query: 350  ELVDLA---YSEW---YEFNSMGSN-IIRREACTAIPIGLHNKKSEYSLDVGHIEIFVSA 508
            E++  A     EW    E  S G+   + R +C       H            ++    A
Sbjct: 385  EVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQ----------WVKCNTDA 434

Query: 509  LWRKD-RKTGWGCIAKNQEGKIIKSWNASR--DDCNSPVEAYLFAIRDGQLMAFREKWKN 679
             W +D  + G G + +N++G++   W  +R      S +EA L A+R   L   R ++  
Sbjct: 435  TWNRDNERCGIGWVLRNEKGEV--KWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNY 492

Query: 680  IIFNIDKEEMVVKLT--QKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECNVACLQLA 853
            +IF  D + ++  L   + +P  K  +   +D+  L+  F   +F  + +E N    ++A
Sbjct: 493  VIFESDSQVLIEILNNDEIWPSLKPTI---QDLQRLLSQFTEVKFVFIPREGNTLAERVA 549


>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1138

 Score = 78.6 bits (192), Expect = 3e-12
 Identities = 70/281 (24%), Positives = 118/281 (41%), Gaps = 30/281 (10%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
            K FLWR   + LP A Q+ +RGM  D  CQ CG+E E+  H+ F C+ A+ VW L+ +  
Sbjct: 832  KMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALSGV-- 889

Query: 182  KKPETGTRFCVWWSNI---CALNQSSFGKDRISLS-TYILWWLWKSRNLWVFQK---CKM 340
              PE G +    ++NI     L +     D +  S  ++LW LWK+RN   F     C +
Sbjct: 890  PTPEFGFQNASIFANIQFLFELKKMILVPDLVKRSWPWVLWRLWKNRNKLFFDGITFCPL 949

Query: 341  PEKELVDLAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYSLDVGHIEIFVSALWRK 520
                 +     EW++  S        E    IP       S      G ++  + + W  
Sbjct: 950  NSIVKIQEDTLEWFQAQSQIRVSESEEGQRVIPF----THSWEPPPEGWVKCNIGSAWSG 1005

Query: 521  DRKT-GWGCIAKNQEGKIIKSWNASRDDCNSPVEA-------------------YLFAIR 640
             +K  G   + +++ G +I     + + C++  EA                    LFA  
Sbjct: 1006 KKKVCGGAWVLRDEHGSVILHSRRAFNGCSNKKEASLRCIFWAIDSMRSHRVSRVLFAFE 1065

Query: 641  DGQLM-AFR--EKWKNIIFNIDKEEMVVKLTQKFPFEKENV 754
             G L+ AF   + W ++ +N+ +    +   +++   +E V
Sbjct: 1066 PGDLLSAFTRPKAWPSLAYNVGELTYFLDKVEEWKVVEEKV 1106


>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1319

 Score = 77.4 bits (189), Expect = 8e-12
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
            K F+W+  +  L    +L+ RG++  + C FC EEIET  H+ F C  A+ VW L+ I  
Sbjct: 1008 KVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLI-- 1065

Query: 182  KKPETGTRFCVWWS-NICALNQSSFGKDR--ISLSTYILWWLWKSRNLWVFQKCKMPEKE 352
            + P TG    ++ + N    N  +FG  R   ++S ++LW +WK+RN  +FQ   +   E
Sbjct: 1066 QAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSE 1125

Query: 353  LVDLAYSE 376
            +V  AY E
Sbjct: 1126 IVAKAYEE 1133


>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
          Length = 1452

 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 77/290 (26%), Positives = 127/290 (43%), Gaps = 3/290 (1%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
            K F+WR  ++ILPTA  L KR   ++ ICQ C  ++ET  H+   C  A+ +W LAP+  
Sbjct: 1146 KIFMWRALKNILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLIV 1205

Query: 182  KKPETGTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCKMPEKELVD 361
            +  +   +   ++S I  +   S   +   +  Y  W +W +RN ++F+  K   + L  
Sbjct: 1206 QPSKDHNQ--DFFSAIQEMWSRSSTAEAELMIVY-CWVIWSARNKFIFEGKKSDSRFLAA 1262

Query: 362  LAYS--EWYEFNSMGSNIIRREACTAIPIGLHNKK-SEYSLDVGHIEIFVSALWRKDRKT 532
             A S  + Y+  S   N+       A   G+  +K    S +V  + +  +A+  KD+K 
Sbjct: 1263 KADSVLKAYQRVSKPGNV-----HGAKDRGIDQQKWKPPSQNVLKLNV-DAAVSTKDQKV 1316

Query: 533  GWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFNIDKEEMV 712
            G G I ++ EGKI+               A   AI  G  +A +    ++I   D +E+V
Sbjct: 1317 GLGAIVRDAEGKILAVGIKQAQFRERVSLAEAEAIHWGLQVANQISSSSLIVESDCKEVV 1376

Query: 713  VKLTQKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECNVACLQLATSA 862
              L        E   +  D+      F+  QF  + + CN     LA  A
Sbjct: 1377 ELLNNTKGSRTEIHWILSDVRRESKEFKQVQFSFIPRTCNTYAHALAKFA 1426


>gb|AFK38936.1| unknown [Medicago truncatula]
          Length = 297

 Score = 76.3 bits (186), Expect = 2e-11
 Identities = 63/286 (22%), Positives = 113/286 (39%), Gaps = 2/286 (0%)
 Frame = +2

Query: 11  LWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISWKKP 190
           +WR  ++I+PT   L++RG+  D +C  C +  E+  H+F  C     VW  +P+ ++ P
Sbjct: 1   MWRLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHLFMACPMTLQVWFASPLGFQPP 60

Query: 191 ETGTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCKMPEKELVDLAY 370
              T    W  +  +  +       + L    LW +W  RN  +F +     + +   A+
Sbjct: 61  PQ-TDLNAWLQSWLSAKEPL----AVQLFCVCLWKIWFFRNQAIFNQVVFEPRMVAASAH 115

Query: 371 SEWYEFN--SMGSNIIRREACTAIPIGLHNKKSEYSLDVGHIEIFVSALWRKDRKTGWGC 544
               EFN  +   ++ R +    + I       + ++D G           K  K  WG 
Sbjct: 116 DFVSEFNLANPTRSVDRLQIPAQVWIAPPTDFLKANIDAGR---------DKHGKVTWGL 166

Query: 545 IAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFNIDKEEMVVKLT 724
           + +N E +++ +   S D    P+      +R G       +  N++F +D   +VVK  
Sbjct: 167 VIRNHESEVLFAATQSPDIMADPLLVETLGLRWGIQTVLELQLSNVMFELD-ASVVVKCF 225

Query: 725 QKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECNVACLQLATSA 862
                         D + L  +        V + CNVA  +LA  A
Sbjct: 226 NGLSTIASISPFISDCHDLFGSLVGSSVSFVNRSCNVAAHELAQVA 271


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 75.9 bits (185), Expect = 2e-11
 Identities = 66/282 (23%), Positives = 126/282 (44%), Gaps = 6/282 (2%)
 Frame = +2

Query: 5    HFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISWK 184
            HFLWRC  + L  A+ L  R + +++ C  C    ET  H+ F C  A++ W ++P+   
Sbjct: 1065 HFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPL--P 1122

Query: 185  KPETGTRFCVWWSN---ICALNQSS-FGKDRISLSTYILWWLWKSRNLWVFQKCKMPEKE 352
             P  G      + N   + ++++S     D  +L  +ILW LWK+RN  VF+  +    +
Sbjct: 1123 APPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQ 1182

Query: 353  LVDLAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYS-LDVGHIEIFVSALWRKD-R 526
            ++  A  +   +N+      R+E    +     ++  ++     G ++      W KD  
Sbjct: 1183 VILKATEDMDAWNN------RKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLG 1236

Query: 527  KTGWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFNIDKEE 706
              G G + +N  G+++     +     S +E  + A+R   L   R  ++ +IF  D + 
Sbjct: 1237 NCGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQY 1296

Query: 707  MVVKLTQKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECN 832
            +V  +  +         + +DI  L+ +FE  +F+   +E N
Sbjct: 1297 LVSLIQNEMDIPSLAPRI-QDIRNLLRHFEEVKFQFTRREGN 1337


>ref|NP_172471.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|332190406|gb|AEE28527.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 303

 Score = 75.1 bits (183), Expect = 4e-11
 Identities = 73/271 (26%), Positives = 109/271 (40%), Gaps = 10/271 (3%)
 Frame = +2

Query: 2   KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
           K FLW+     LP  AQL +R +     C  CG   ET  H+ FHC  A  VW LAP+  
Sbjct: 5   KLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAP-ETSTHMLFHCDFAAQVWNLAPLQL 63

Query: 182 KKPETGTRFCVWWSNICALN-------QSSFGKDRISLSTYILWWLWKSRNLWVFQKCKM 340
                GT        + ALN           G    +L  +I W +WK+RN  +FQ    
Sbjct: 64  GHIPIGTPI------LEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHF 117

Query: 341 PEKELVDLAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYSLDVGHIEIFVSALWRK 520
              E V  A  +   + S    + +    T  P    N  +  + D      +V A W++
Sbjct: 118 SVIETVTKAVQDALAWQSAQLALPKVRVATPRP----NSTTTLTHD---FLCYVDAAWQQ 170

Query: 521 DRK---TGWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFN 691
                 +GW   A +   K I +++A      SP+ A  +AI+   L A + +  +++  
Sbjct: 171 QSSLAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVL 230

Query: 692 IDKEEMVVKLTQKFPFEKENVCLAEDIYLLI 784
            D + +V  L         NV L E   LL+
Sbjct: 231 SDSKSIVDAL-------NSNVSLNEIFGLLV 254


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 75.1 bits (183), Expect = 4e-11
 Identities = 71/290 (24%), Positives = 113/290 (38%), Gaps = 6/290 (2%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWK----LA 169
            +HFLWR   S LP    L++R +  +  C  C  E ET+ H+F+ C  +  +W+      
Sbjct: 1052 RHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSLKLWEELGSYI 1111

Query: 170  PISWKKPETGTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCKMPEK 349
             +   + E      V WS + A          +    YILW +W  RN  VF+    P  
Sbjct: 1112 LLPGIEDEAMCDTLVRWSQMDA--------KVVQKGCYILWNVWVERNRRVFEHTSQPAT 1163

Query: 350  ELVDLAYSEWYEFNSMGSNII--RREACTAIPIGLHNKKSEYSLDVGHIEIFVSALWRKD 523
             +      +  +FN+    I    R +    P         Y+  VG I++   A   ++
Sbjct: 1164 VVGQRIMRQVEDFNNYAVKIYGGMRSSAALSP------SRWYAPPVGAIKLNTDASLAEE 1217

Query: 524  RKTGWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFNIDKE 703
               G G IA++ EGK+  +          P  A   AI     +A    + ++IF  D  
Sbjct: 1218 GWVGLGVIARDSEGKVCFAATRRVRAYWPPEVAECKAIYMATRLAQAHGYGDVIFESDSL 1277

Query: 704  EMVVKLTQKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECNVACLQLA 853
                +LT+   F  +   +  DI  +   F S  F  V ++ N     LA
Sbjct: 1278 VATKRLTKAAIFFSDLDAILGDILSMCNAFSSVSFSHVKRDGNTVAHNLA 1327


>gb|AAC34342.1| Hypothetical protein [Arabidopsis thaliana]
          Length = 374

 Score = 75.1 bits (183), Expect = 4e-11
 Identities = 73/271 (26%), Positives = 109/271 (40%), Gaps = 10/271 (3%)
 Frame = +2

Query: 2   KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
           K FLW+     LP  AQL +R +     C  CG   ET  H+ FHC  A  VW LAP+  
Sbjct: 5   KLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAP-ETSTHMLFHCDFAAQVWNLAPLQL 63

Query: 182 KKPETGTRFCVWWSNICALN-------QSSFGKDRISLSTYILWWLWKSRNLWVFQKCKM 340
                GT        + ALN           G    +L  +I W +WK+RN  +FQ    
Sbjct: 64  GHIPIGTPI------LEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHF 117

Query: 341 PEKELVDLAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYSLDVGHIEIFVSALWRK 520
              E V  A  +   + S    + +    T  P    N  +  + D      +V A W++
Sbjct: 118 SVIETVTKAVQDALAWQSAQLALPKVRVATPRP----NSTTTLTHD---FLCYVDAAWQQ 170

Query: 521 DRK---TGWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFN 691
                 +GW   A +   K I +++A      SP+ A  +AI+   L A + +  +++  
Sbjct: 171 QSSLAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVL 230

Query: 692 IDKEEMVVKLTQKFPFEKENVCLAEDIYLLI 784
            D + +V  L         NV L E   LL+
Sbjct: 231 SDSKSIVDAL-------NSNVSLNEIFGLLV 254


>ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
            sinensis]
          Length = 765

 Score = 73.9 bits (180), Expect = 8e-11
 Identities = 76/290 (26%), Positives = 127/290 (43%), Gaps = 3/290 (1%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
            K F+WR  ++ILPTA  L KR   ++ ICQ C  ++ET  H+   C  A+ +W LAP+  
Sbjct: 459  KIFMWRALKNILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLIV 518

Query: 182  KKPETGTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCKMPEKELVD 361
            +  +   +   ++S I  +   S   +   +  Y  W +W +RN ++F+  K   + L  
Sbjct: 519  QPSKDHNQ--DFFSAIQEMWSRSSTAEAELMIVY-CWVIWSARNKFIFEGKKSDSRFLAA 575

Query: 362  LAYS--EWYEFNSMGSNIIRREACTAIPIGLHNKK-SEYSLDVGHIEIFVSALWRKDRKT 532
             A S  + Y+  S   N+       A   G+  +K    S +V  + +  +A+  K +K 
Sbjct: 576  KADSVLKAYQRVSKPGNV-----HGAKDRGIDQQKWKPPSQNVLKLNV-DAAVSTKXQKV 629

Query: 533  GWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFNIDKEEMV 712
            G G I ++ EGKI+               A   AI  G  +A +    ++I   D +E+V
Sbjct: 630  GLGAIVRDAEGKILAVGIKQAQFRERVSLAEAEAIHWGLQVANQISSSSLIVESDCKEVV 689

Query: 713  VKLTQKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECNVACLQLATSA 862
              L        E   +  D+     +F+  QF  + + CN     LA  A
Sbjct: 690  ELLNNTKGSRTEIHWILSDVRRESKDFKQVQFSFIPRTCNTYAHALAKFA 739


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 73.9 bits (180), Expect = 8e-11
 Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 10/201 (4%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
            K FLWR   S LP A Q+ +RGM  D  CQ CGEE E+  H+ F C+ A+ VW L+ +  
Sbjct: 1058 KLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGV-- 1115

Query: 182  KKPETGTRFCVWWSNI---CALNQSSFGKDRISLS-TYILWWLWKSRNL-----WVFQKC 334
               + G +    ++NI     L       ++I  S  ++LW LWK+R+       +F   
Sbjct: 1116 PTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPL 1175

Query: 335  KMPEKELVDLAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYSLDVGHIEIFVSALW 514
            K  EK   D+   EW+   ++ +++   E   + P       S     +G ++  +S +W
Sbjct: 1176 KSIEKIRDDV--QEWFLAQALVASVDAGETVCSAPC----PSSWEPPPLGWVKCNISGVW 1229

Query: 515  R-KDRKTGWGCIAKNQEGKII 574
              K R  G   + ++  GK++
Sbjct: 1230 SGKKRVCGGAWVLRDDHGKVL 1250


>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
 Frame = +2

Query: 2   KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
           KHFLW+     L T   LK+R ++    C  C +E ET  H+FF C  AQ VW+ + I  
Sbjct: 28  KHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPH 87

Query: 182 KKPET-----GTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCKMPE 346
           ++  T      T+  +  S+  A  Q        +L+ +ILW LWKSRN  VFQ+  +  
Sbjct: 88  QELRTTGITMETKMELLLSSCLANRQPQL----FNLAIWILWRLWKSRNQLVFQQKSISW 143

Query: 347 KELVDLA---YSEWYEFNS 394
           +  +  A     EW + N+
Sbjct: 144 QNTLQRARNDVQEWEDTNT 162


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 73.2 bits (178), Expect = 1e-10
 Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 13/220 (5%)
 Frame = +2

Query: 2    KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
            KHF+WRC    L T  QL+ R +  D  CQ C    ET  HI F C+ AQ+VW+ A  S 
Sbjct: 1398 KHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFS- 1456

Query: 182  KKPETGTRFCV---WWSNICALNQSSFGKDRISLS----TYILWWLWKSRNLWVFQKC-K 337
                   R C       NI  + Q    ++   L+     +I+W LWKSRN ++FQ+  +
Sbjct: 1457 ----GSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLDR 1512

Query: 338  MPEK--ELVDLAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYSLDVGHIEIFVSAL 511
             P K  +  +   +EW E   +    I      +    L   K   S   G ++    + 
Sbjct: 1513 FPWKVAQKAEQEATEWVE-TMVNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSG 1571

Query: 512  WRKDR---KTGWGCIAKNQEGKIIKSWNASRDDCNSPVEA 622
            + + R    TGW  I ++  G+++ S  A      S ++A
Sbjct: 1572 YVQGRDYTSTGW--ILRDCNGRVLHSGCAKLQQSYSALQA 1609


>ref|XP_006491602.1| PREDICTED: uncharacterized protein LOC102623801 [Citrus sinensis]
          Length = 441

 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 71/293 (24%), Positives = 123/293 (41%), Gaps = 6/293 (2%)
 Frame = +2

Query: 2   KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
           K F+WR  +++LPT + L +R +    IC+ CG + E  +H    C  A+ VW+ A  + 
Sbjct: 135 KIFMWRAVKNLLPTTSNLWRRKIVGSPICRRCGVKNEDVIHALLDCKVAKKVWRNAGCAE 194

Query: 182 KKPETGTRFCVWWSNICALNQSSFGKDRISLSTYILWWLWKSRNLWVFQKCKMPEKELVD 361
           +  +   +  +    +    Q   GK  + L   + W +W SRNL++F+  +  E   + 
Sbjct: 195 EIEKLVQQDLM---AVLVEIQRKKGKKELELIVVLCWTIWYSRNLFIFENKR--EDSQLS 249

Query: 362 LAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYS-LDVGHIEIFVSALWR-KDRKTG 535
           +A +   E N      I++ +   +     N+K  ++    G  +I V A    KD+  G
Sbjct: 250 IARA---EANLDSFRRIKKPSSKILEKQQRNRKQVWNPPPCGWFKINVDAAVNVKDQIAG 306

Query: 536 WGCIAKNQEGKI----IKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNIIFNIDKE 703
            G I +N  G++    I+         +   EA +  I+  Q    R  +  +I   D +
Sbjct: 307 LGVIIRNSNGEVVAAAIQRSFFQLSSTHMEAEAVILGIKSAQ----RAGFSPMIIETDSQ 362

Query: 704 EMVVKLTQKFPFEKENVCLAEDIYLLIFNFESCQFKVVWKECNVACLQLATSA 862
           E+V     K     E   +  DI   I +      +   +ECNV    LA  A
Sbjct: 363 EVVDLTLSKKVSITETSWIIADIQESIQSSNQFSIQYTPRECNVTAHDLAKKA 415


>gb|EMJ04273.1| hypothetical protein PRUPE_ppa023544mg, partial [Prunus persica]
          Length = 394

 Score = 71.6 bits (174), Expect = 4e-10
 Identities = 70/265 (26%), Positives = 110/265 (41%), Gaps = 13/265 (4%)
 Frame = +2

Query: 2   KHFLWRCNQSILPTAAQLKKRGMKKDEICQFCGEEIETEMHIFFHCTRAQMVWKLAPISW 181
           K FLWR     LPT   L +R +     C  C +  E+E H  F C   Q VW  +P+++
Sbjct: 91  KFFLWRMMVRALPTKLNLYRRRIISSPFCPICNQYEESEEHAIFLCPWTQAVWFGSPLNY 150

Query: 182 K-KPETGTRFCVWWSNICALNQSSFGKDR----ISLSTYILWWLWKSRNLWVFQKCKMPE 346
           +  P++ T F  W++ +  LN   F K      +SL ++I W +WK+R       C    
Sbjct: 151 RVNPQSITTFDRWFTGL--LNSQMFSKSERVWVLSLVSFISWEIWKAR-------C---- 197

Query: 347 KELVDLAYSEWYEFNSMGSNIIRREACTAIPIGLHNKKSEYSLDV--------GHIEIFV 502
             +V+ A S   EF     +++RR A     I   N    +S           G I++  
Sbjct: 198 --VVERATSAAEEF-----DVLRRHA-----ISTRNGAGVFSQPTDIWKPPVNGAIKVNF 245

Query: 503 SALWRKDRKTGWGCIAKNQEGKIIKSWNASRDDCNSPVEAYLFAIRDGQLMAFREKWKNI 682
            A W K+ + G G + +N        + AS+  CNS + A   A  +    A    +  I
Sbjct: 246 DAAW-KNHEAGLGVVMRNHNKDFCYGF-ASKRCCNSALNAETEAAIEALRCASLRGYSKI 303

Query: 683 IFNIDKEEMVVKLTQKFPFEKENVC 757
               D + ++  +       K NVC
Sbjct: 304 EMESDSKVLIDNI-------KGNVC 321