BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia24_contig00015670
         (2487 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   426   0.0  
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   426   0.0  
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           416   0.0  
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     412   0.0  
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   426   0.0  
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        418   0.0  
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              400   0.0  
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              401   0.0  
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              400   0.0  
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  397   0.0  
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              397   0.0  
gb|AFB73912.1| polyprotein [Citrus sinensis]                          398   0.0  
gb|AFB73911.1| polyprotein [Citrus sinensis]                          397   0.0  
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             384   0.0  
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   374   0.0  
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   376   0.0  
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   385   0.0  
emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]   374   0.0  
emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]   375   0.0  
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]         380   0.0  

>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  426 bits (1095), Expect(2) = 0.0
 Identities = 229/453 (50%), Positives = 292/453 (64%), Gaps = 16/453 (3%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGVAERMNRT++ + 
Sbjct: 540  ERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRA 599

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  DY  L+VFG  A
Sbjct: 600  RCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMP-ADYSQLKVFGCTA 658

Query: 362  YYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-KTVTSEK 538
            Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E  M   ++ SE 
Sbjct: 659  YAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEH 718

Query: 539  TDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEVQTQEPLDQSE-- 697
                 ++++R   QVE  +    + + P    +    D++DDD  ++VQ   P+ Q E  
Sbjct: 719  VPE--KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEE 776

Query: 698  -PIALRRPRREIHKPARFAD-------MVANALPVIDDDVPFTFREAVRSPESEKWKGAM 853
             PIA R+ +R    P R  +        ++ A  V +   P T++EAVR  +SE W  AM
Sbjct: 777  LPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAM 836

Query: 854  EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGI 1033
             EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +YKARLVA+GY+Q  G+
Sbjct: 837  HEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGV 896

Query: 1034 DYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGK 1213
            DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE+IYM QPEGF V GK
Sbjct: 897  DYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGK 956

Query: 1214 ENWVYKLIKSLYGLKQSPRQWYKRFDKFMMGRS 1312
            E +V KL +SLYGLKQSPRQW KRFD FM+  S
Sbjct: 957  EKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHS 989



 Score =  417 bits (1072), Expect(2) = 0.0
 Identities = 209/348 (60%), Positives = 266/348 (76%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            + RSKYD CVY+ K  +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG  K
Sbjct: 990  FKRSKYDSCVYI-KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAK 1048

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGMEISRDR SG L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D 
Sbjct: 1049 KILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDA 1107

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            E +YM +VPY++AVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+  T
Sbjct: 1108 EIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGT 1167

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
                L F   G+  + ++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALS
Sbjct: 1168 TYSCLKF---GRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALS 1224

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA+ EA KE IWL+ L  +L   +  I++HCDSQSAI+L K+Q+ H RTKHID+
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDI 1284

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHFVR+++EEG + + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1285 KYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLI 1332


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  426 bits (1095), Expect(2) = 0.0
 Identities = 229/453 (50%), Positives = 292/453 (64%), Gaps = 16/453 (3%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGVAERMNRT++ + 
Sbjct: 540  ERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRA 599

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  DY  L+VFG  A
Sbjct: 600  RCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-ADYSQLKVFGCTA 658

Query: 362  YYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-KTVTSEK 538
            Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E  M   ++ SE 
Sbjct: 659  YAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEH 718

Query: 539  TDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEVQTQEPLDQSE-- 697
                 ++++R   QVE  +    + + P    +    D++DDD  ++VQ   P+ Q E  
Sbjct: 719  VPE--KELQRMHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEE 776

Query: 698  -PIALRRPRREIHKPARFAD-------MVANALPVIDDDVPFTFREAVRSPESEKWKGAM 853
             PIA R+ +R    P R  +        ++ A  V +   P T++EAVR  +SE W  AM
Sbjct: 777  LPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAM 836

Query: 854  EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGI 1033
             EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +YKARLVA+GY+Q  G+
Sbjct: 837  HEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGV 896

Query: 1034 DYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGK 1213
            DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE+IYM QPEGF V GK
Sbjct: 897  DYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGK 956

Query: 1214 ENWVYKLIKSLYGLKQSPRQWYKRFDKFMMGRS 1312
            E +V KL +SLYGLKQSPRQW KRFD FM+  S
Sbjct: 957  EKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHS 989



 Score =  413 bits (1062), Expect(2) = 0.0
 Identities = 207/348 (59%), Positives = 264/348 (75%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            + RSKYD CVY+ K  +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG  K
Sbjct: 990  FKRSKYDSCVYI-KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAK 1048

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KIL MEISRDR SG L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D 
Sbjct: 1049 KILVMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDA 1107

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            E +YM +VPY++AVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+ V+WI RY+  T
Sbjct: 1108 EIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRVVQWIFRYLRGT 1167

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
                L F   G+  + ++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALS
Sbjct: 1168 TYSCLKF---GRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALS 1224

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA+ EA KE IWL+ L  +L   +  I++HCDSQSAI+L K+Q+ H RTKHID+
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDI 1284

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHFVR+++EEG + + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1285 KYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGLI 1332


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  416 bits (1070), Expect(2) = 0.0
 Identities = 208/348 (59%), Positives = 266/348 (76%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            + RSKYD CVY+ K  +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG  K
Sbjct: 992  FKRSKYDSCVYI-KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAK 1050

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGMEISRDR SG L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D 
Sbjct: 1051 KILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSTDA 1109

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            E +YM +VPY++AVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+A++WI RY+  T
Sbjct: 1110 EIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRALQWIFRYLRGT 1169

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
                L F   G+  + ++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALS
Sbjct: 1170 TYSCLKF---GRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALS 1226

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA+ EA KE IWL+ L  +L   +  I++HCDSQSAI+L K+Q+ H RTKHID+
Sbjct: 1227 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDI 1286

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHFVR+++EEG + + KI T +NPADM+TK +   KF+ C  L+ ++
Sbjct: 1287 KYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLVGLI 1334



 Score =  416 bits (1069), Expect(2) = 0.0
 Identities = 226/453 (49%), Positives = 288/453 (63%), Gaps = 16/453 (3%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E QT RK+K+L TDNGGE+ S  F + C + GIVRH T+  TPQQNGVAERMNRT++ + 
Sbjct: 542  ERQTERKVKLLCTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRA 601

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  DY  L+VFG  A
Sbjct: 602  RCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-ADYSQLKVFGCTA 660

Query: 362  YYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-KTVTSEK 538
            Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E  M   ++ SE 
Sbjct: 661  YAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEH 720

Query: 539  TDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEVQTQEPLDQSE-- 697
                 ++++R   QVE  +    + + P    +    D++DDD  ++VQ   P+ Q E  
Sbjct: 721  VPE--KELQRMHMQVEHVDDDTGVQVEPVDEQDDHNNDVADDDAHDDVQQTPPILQLEED 778

Query: 698  -PIALRRPRREIHKPARFAD-------MVANALPVIDDDVPFTFREAVRSPESEKWKGAM 853
              IA R+ +R    P R  +        ++ A  V +   P T++EAVR  +SE W  AM
Sbjct: 779  LSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAM 838

Query: 854  EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGI 1033
             EEMQSL+KN TW+V  LPK KK I CKW+F +K+        +YKARLVA+GY+Q  G+
Sbjct: 839  HEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQIPGV 898

Query: 1034 DYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGK 1213
            DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE+IYM QPEGF V GK
Sbjct: 899  DYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGK 958

Query: 1214 ENWVYKLIKSLYGLKQSPRQWYKRFDKFMMGRS 1312
            E +V KL +SLYGLKQSPRQW KRFD FM+  S
Sbjct: 959  EKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHS 991


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  412 bits (1058), Expect(2) = 0.0
 Identities = 204/339 (60%), Positives = 260/339 (76%), Gaps = 1/339 (0%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            YTR +YD CVY H  +DG  I LLLYVDDMLIA +  L+I KLK +L  EF+MKDLG  +
Sbjct: 955  YTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQ 1014

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILG+EI RDR +GK+ L+Q++Y+ K+L+RF M E  K VS PLA H +LSA+  P + +
Sbjct: 1015 KILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAE-AKVVSIPLAAHFRLSAEQRPSDQK 1073

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            E D M  VPYA+AVG LMYAM+CTRPD++QA+SVVS+YM +PGK HW+AVKWI +Y+ NT
Sbjct: 1074 EIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSKYMSNPGKRHWEAVKWIFKYLKNT 1133

Query: 1852 VDVGLVFEQDGKLGQSIV-GYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVAL 2028
              +G++FE+  + G++ V G+ DSD+AGDLD+RRST GY+FT    PVSWK+TLQ+  AL
Sbjct: 1134 RQLGIMFER--RQGEACVAGFVDSDFAGDLDRRRSTAGYVFTCGGGPVSWKATLQAVTAL 1191

Query: 2029 STTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHID 2208
            STTEAEYMA++EA KEAIWL  L   LGV Q+ + V CDSQSAIHLAKNQV HARTKHID
Sbjct: 1192 STTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLAKNQVFHARTKHID 1251

Query: 2209 VRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKF 2325
             RYH +R+ +E G I++EK+HT +N AD LTK V+  K+
Sbjct: 1252 ARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVEKY 1290



 Score =  409 bits (1050), Expect(2) = 0.0
 Identities = 222/448 (49%), Positives = 285/448 (63%), Gaps = 15/448 (3%)
 Frame = +2

Query: 5    NQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKVR 184
            NQT RKIK LR+DNGGEY    F ++C   GI RHFTV+++PQQNGVAERMNRTL+EK R
Sbjct: 510  NQTGRKIKCLRSDNGGEYRDKKFLQLCKDEGITRHFTVKKSPQQNGVAERMNRTLMEKER 569

Query: 185  CMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLAY 364
             M  +AGL  + WAEA  +A +LINR PS AI  K   EVWSGKPV DY +LRVFG  AY
Sbjct: 570  SMRFHAGLPEEFWAEAANHACYLINRSPSRAINFKCAEEVWSGKPV-DYSNLRVFGCSAY 628

Query: 365  YHV---KESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSE 535
             H+   + +KLEP++   LF+G   GVKGY+LW + ++K + SRDV FDE   +    ++
Sbjct: 629  AHIPKDERTKLEPKSLECLFIGFEKGVKGYKLWDIVNEKKVISRDVVFDEREAISISLAK 688

Query: 536  KT----DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQT----QEPLDQ 691
             +    ++ ++Q E+   +V +EE    P     P      +   +  Q     Q P   
Sbjct: 689  PSVADSEAQVEQNEQGNDEVAIEE----PEHQQQPTVMAQVEQSPQRGQNSPIPQAPESF 744

Query: 692  SEPIALRRPRREIHKPARFA----DMVANALPVIDDDVPFTFREAVRSPESEKWKGAMEE 859
               IAL +P+R      RF     + V+ AL +   D P T+ +A+ S ES  W GAM E
Sbjct: 745  KRSIALDKPKRNRKPIQRFGFEPEEDVSRALSISQGD-PTTYEDAIESVESAGWIGAMTE 803

Query: 860  EMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGIDY 1039
            EM+SL KN  W++   PK +K +GCKWVF KK+G    + + YKARLVAKGY+QKEG+DY
Sbjct: 804  EMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDY 863

Query: 1040 NEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKEN 1219
            +E+FSPVVKH+SIR+               DVKTAFLHGDLEE+IYM+QPEGF   GKEN
Sbjct: 864  DEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKEN 923

Query: 1220 WVYKLIKSLYGLKQSPRQWYKRFDKFMM 1303
             V +L KSLYGLKQSPRQWYK FD +M+
Sbjct: 924  LVCRLKKSLYGLKQSPRQWYKPFDTYML 951


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  426 bits (1095), Expect(2) = 0.0
 Identities = 229/453 (50%), Positives = 292/453 (64%), Gaps = 16/453 (3%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E QT RK+K+LRTDNGGE+ S  F + C + GIVRH T+  TPQQNGVAERMNRT++ + 
Sbjct: 540  ERQTERKVKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRA 599

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            RCMLS+A + ++ WAEA + A +LINR PS  +  KTP+EVWSG P  DY  L+VFG  A
Sbjct: 600  RCMLSHARMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTP-ADYSQLKVFGCTA 658

Query: 362  YYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAML-KTVTSEK 538
            Y HV   KLEPRA + LF+G  SGVKGY+LW  E+ K   SR V F+E  M   ++ SE 
Sbjct: 659  YAHVDNGKLEPRAVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNSLPSEH 718

Query: 539  TDSALQQVERTPKQVEVEE----MAIIPAKNDNPVTEDLSDDD-EEEVQTQEPLDQSE-- 697
                 ++++R   QVE  +    + + P    +    D++DDD  ++VQ   P+ Q E  
Sbjct: 719  VPE--KELQRMHMQVEHVDDDTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPILQLEEE 776

Query: 698  -PIALRRPRREIHKPARFAD-------MVANALPVIDDDVPFTFREAVRSPESEKWKGAM 853
             PIA R+ +R    P R  +        ++ A  V +   P T++EAVR  +SE W  AM
Sbjct: 777  LPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISAM 836

Query: 854  EEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGI 1033
             EEMQSL+KN TW+V  LPK KK I CKW+F +K+G  +    +YKARLVA+GY+Q  G+
Sbjct: 837  HEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPGV 896

Query: 1034 DYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGK 1213
            DYN+VFSPVVKHSSIR                DVKTAFLHG+LEE+IYM QPEGF V GK
Sbjct: 897  DYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGK 956

Query: 1214 ENWVYKLIKSLYGLKQSPRQWYKRFDKFMMGRS 1312
            E +V KL +SLYGLKQSPRQW KRFD FM+  S
Sbjct: 957  EKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHS 989



 Score =  386 bits (992), Expect(2) = 0.0
 Identities = 194/316 (61%), Positives = 245/316 (77%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            + RSKYD CVY+ K  +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG  K
Sbjct: 990  FKRSKYDSCVYI-KHVNGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAK 1048

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGMEISRDR SG L L+Q  Y+KKVLQRF M +N K VSTP+APH KLSA   P  D 
Sbjct: 1049 KILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVSTPIAPHFKLSAAQCPSIDA 1107

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            E +YM +VPY++AVGSLMYAMVC+RPD+S A+S+VSRYM +PGK HW+AV+WI RY+  T
Sbjct: 1108 EIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSRYMSNPGKEHWRAVQWIFRYLRGT 1167

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
                L F   G+  + ++GY DSDYA DLD+RRS TGY+FT+    VSW++TLQS VALS
Sbjct: 1168 TYSCLKF---GRTDKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATLQSVVALS 1224

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA+ EA KE IWL+ L  +L   +  I++HCDS+SAI+L K+Q+ H RTKHID+
Sbjct: 1225 TTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSESAIYLTKDQMFHERTKHIDI 1284

Query: 2212 RYHFVREILEEGNILL 2259
            +YHFVR+++EE + L+
Sbjct: 1285 KYHFVRDVIEEDDWLI 1300


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  418 bits (1074), Expect(2) = 0.0
 Identities = 222/451 (49%), Positives = 290/451 (64%), Gaps = 15/451 (3%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            ENQ+  K+K LRTDNG E+ S  F+E C K+GI RH TVR TPQQNG+AERMNRTLV+K 
Sbjct: 538  ENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKT 597

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            RCML N+ L R  WAEAV  A +L+NR PSSAIG KTP E+W+GKP  +Y +LRVFG  A
Sbjct: 598  RCMLINSKLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPA-NYQNLRVFGCPA 656

Query: 362  YYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKT 541
            Y H+ + KLE RA + +F+G   GVKGY++WC +  K + SRDV F E  +LK   S + 
Sbjct: 657  YLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQGKCIVSRDVVFHESVLLKE--SAEH 714

Query: 542  DSALQQVERTPKQVEVEEMAI-IPAKNDNPVTEDLSDDDEEEVQTQEPLDQSE------- 697
            D+ LQ      K+   E   + +    D    ++ + DDE      E  + SE       
Sbjct: 715  DAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATAESEEHEVSELPQADLQ 774

Query: 698  --PIALRRPRREIHKPARF--ADMVANALPVIDD---DVPFTFREAVRSPESEKWKGAME 856
               +A  R RRE+  P R+  AD++A AL   D+   + P  F EA+ S   +KW  AM+
Sbjct: 775  NYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQ 834

Query: 857  EEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGID 1036
            +EM+SLQ+N+TW +   P  K+ I CKW+F + +G P+    +YKARLVA+G+ Q+EG+D
Sbjct: 835  DEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVD 894

Query: 1037 YNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKE 1216
            +NE+FSPVVKHSSIRI               DVKTAFLHG+LEE+I M QPEGF+   KE
Sbjct: 895  FNEIFSPVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKE 954

Query: 1217 NWVYKLIKSLYGLKQSPRQWYKRFDKFMMGR 1309
            ++V  L KSLYGLKQSPRQWY+RFD FM+ +
Sbjct: 955  DYVCLLHKSLYGLKQSPRQWYRRFDDFMVSK 985



 Score =  378 bits (971), Expect(2) = 0.0
 Identities = 190/348 (54%), Positives = 255/348 (73%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y RS+YD CVY      G   YLLLYVDDMLIAS+ + EI++LK  L  EFEMKDLG  K
Sbjct: 987  YRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAK 1046

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            +ILGM+I RDR++G L L+Q +Y+KKVL+RF M ++ KPV TPL P  KLSA  +    E
Sbjct: 1047 RILGMDIIRDRSAGTLFLSQGKYIKKVLERFEM-QDCKPVQTPLGPQFKLSAATT---SE 1102

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            +   M++ PYA AVGSLMYAMVCTR DI+ AVSVVSRY+  PGK HW AVKWI+RY+  +
Sbjct: 1103 DESQMNEFPYAQAVGSLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGS 1162

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
               GL++ +       ++G+ DSD+AGDLD+R+ST+ Y+F L    +SWKS+LQS  ALS
Sbjct: 1163 STCGLLYGKTKSDKIEVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALS 1222

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            +TEAE++A +EAVKEA+WL+ LL +L + QK + V CD+Q+AIHL KNQ+ H RTKHIDV
Sbjct: 1223 STEAEFIATTEAVKEAMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQMYHERTKHIDV 1282

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +  F+R+ + +G +++ KIHT+ NPAD LTK + + KF+ C++L+ I+
Sbjct: 1283 KLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAKFEFCVNLMGIM 1330


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  400 bits (1027), Expect(2) = 0.0
 Identities = 200/348 (57%), Positives = 258/348 (74%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y+R   DHC Y  +     FI LLLYVDDML+   ++  + +LKAQL +EF+MKDLG   
Sbjct: 960  YSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ KP+STPL  + KLS+ +SP N+ 
Sbjct: 1020 KILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEA 1078

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR+M DPGK HW AVK I+RYI  T
Sbjct: 1079 ERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGT 1138

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
              V + F   G    ++ GY DSD+AGD DKR+STTGY+FTLA   VSW S LQ+ VALS
Sbjct: 1139 SGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALS 1195

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA ++A KEAIW+Q L+E+LG  Q+ ITV+CDSQSA+H+A+N   H+RTKHI V
Sbjct: 1196 TTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGV 1255

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHFVRE++EEG++ ++KIHT +N AD++TK + + KF  C     +L
Sbjct: 1256 QYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVWCRSSYGLL 1303



 Score =  394 bits (1011), Expect(2) = 0.0
 Identities = 216/442 (48%), Positives = 290/442 (65%), Gaps = 8/442 (1%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E +TR+KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAERMNRTL+E+ 
Sbjct: 537  ELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERT 596

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  AG+ +  WAEAV  A ++INR PS+AI  KTP+E+W GKPV DY SL VFG   
Sbjct: 597  RAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPV 655

Query: 362  Y--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTS 532
            Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E+ +    + 
Sbjct: 656  YVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQ---SE 712

Query: 533  EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIALR 712
            +K DS       T K+  + +M     ++D+   E + ++       QEP D ++ +  R
Sbjct: 713  QKNDS-------TSKETAIVQMEEKSKESDSSEAESVHEE-------QEPDDVNDGV--R 756

Query: 713  RPRREIHKPARFADMVANALP----VIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQK 880
            R  R+  KP+  +D V  +      + ++  P TF EA+   ++ +W  AM EEM++L +
Sbjct: 757  RSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHR 816

Query: 881  NKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSP 1057
            NKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSP
Sbjct: 817  NKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSP 874

Query: 1058 VVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYKLI 1237
            VV+ ++IR+               DVKTAFLHG+LEEEIYM QPEGFK  GKEN V +L 
Sbjct: 875  VVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLT 934

Query: 1238 KSLYGLKQSPRQWYKRFDKFMM 1303
            KSLYGLKQ+PR WYKRFD F++
Sbjct: 935  KSLYGLKQAPRCWYKRFDSFII 956


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  401 bits (1031), Expect(2) = 0.0
 Identities = 201/348 (57%), Positives = 258/348 (74%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y+R   DHC Y  +     FI LLLYVDDML+   ++  + +LKAQL +EF+MKDLG   
Sbjct: 960  YSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ KP+STPL  + KLS+ +SP N+ 
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEA 1078

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR+M DPGK HW AVK I+RYI  T
Sbjct: 1079 ERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGT 1138

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
              V + F   G    ++ GY DSD+AGD DKR+STTGY+FTLA   VSW S LQ+ VALS
Sbjct: 1139 SGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALS 1195

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA ++A KEAIW+Q L+E+LG  Q+ ITV+CDSQSA+H+A+N   H+RTKHI V
Sbjct: 1196 TTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGV 1255

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHFVRE++EEG++ ++KIHT +N AD +TK + + KF  C  L  +L
Sbjct: 1256 QYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSLYGLL 1303



 Score =  390 bits (1002), Expect(2) = 0.0
 Identities = 214/444 (48%), Positives = 284/444 (63%), Gaps = 10/444 (2%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E +T +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAERMNRTL+E+ 
Sbjct: 537  ELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERT 596

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  AG+ +  WAEAV  A ++INR PS+AI  KTP+E+W GKPV DY SL VFG   
Sbjct: 597  RAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPV 655

Query: 362  Y--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTS 532
            Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E+ +     +
Sbjct: 656  YVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSKQKN 715

Query: 533  EKT--DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIA 706
            + T  ++A+ Q+E   K+ +  E          PV E+   DD                 
Sbjct: 716  DSTSKETAIVQMEEKSKESDSSEA--------EPVHEEQEPDDVNN-------------G 754

Query: 707  LRRPRREIHKPARFADMVANALP----VIDDDVPFTFREAVRSPESEKWKGAMEEEMQSL 874
            +RR  R+  KP+  +D V  +      + ++  P TF EA+   ++ +W  AM EEM++L
Sbjct: 755  VRRSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEAL 814

Query: 875  QKNKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVF 1051
             +NKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+F
Sbjct: 815  HRNKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIF 872

Query: 1052 SPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYK 1231
            SPVV+ ++IR+               DVKTAFLHG+LEEEIYM QPEGFK  GKEN V +
Sbjct: 873  SPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCR 932

Query: 1232 LIKSLYGLKQSPRQWYKRFDKFMM 1303
            L KSLYGLKQ+PR WYKRFD F++
Sbjct: 933  LTKSLYGLKQAPRCWYKRFDSFII 956


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  400 bits (1027), Expect(2) = 0.0
 Identities = 200/348 (57%), Positives = 257/348 (73%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y R   DHC Y  +     FI LLLYVDDML+   ++  + +LKAQL +EF+MKDLG   
Sbjct: 960  YNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ KP+STPL  + KLS+ +SP N+ 
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEA 1078

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR+M DPGK HW AVK I+RYI  T
Sbjct: 1079 ERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGT 1138

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
              V + F   G    ++ GY DSD+AGD DKR+STTGY+FTLA   VSW S LQ+ VALS
Sbjct: 1139 SGVAVCF---GGSELTVWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALS 1195

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA ++A KEAIW+Q L+E+LG  Q+ ITV+CDSQSA+H+A+N   H+RTKHI V
Sbjct: 1196 TTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGV 1255

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHFVRE++EEG++ ++KIHT +N AD++TK + + KF  C     +L
Sbjct: 1256 QYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDKFVWCRSSYGLL 1303



 Score =  390 bits (1003), Expect(2) = 0.0
 Identities = 214/442 (48%), Positives = 288/442 (65%), Gaps = 8/442 (1%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E +T +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAERMNRTL+E+ 
Sbjct: 537  ELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERT 596

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  AG+ +  WAEA   A ++INR PS+AI  KTP+E+W GKPV DY SL VFG   
Sbjct: 597  RAMLKTAGMAKSFWAEAAKTACYVINRSPSTAIDLKTPMEMWKGKPV-DYSSLHVFGCPV 655

Query: 362  Y--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTS 532
            Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E+ +    + 
Sbjct: 656  YVMYNSQEKTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQ---SE 712

Query: 533  EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIALR 712
            +K DS       T K+  + +M     ++D+   E + ++       QEP D ++ +  R
Sbjct: 713  QKNDS-------TSKETAIVQMEEKSKESDSSEAESVHEE-------QEPDDVNDGV--R 756

Query: 713  RPRREIHKPARFADMVANALP----VIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQK 880
            R  R+  KP+  +D V  +      + ++  P TF EA+   ++ +W  AM EEM++L +
Sbjct: 757  RSTRQTQKPSWQSDYVMTSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHR 816

Query: 881  NKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSP 1057
            NKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSP
Sbjct: 817  NKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSP 874

Query: 1058 VVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYKLI 1237
            VV+ ++IR+               DVKTAFLHG+LEEEIYM QPEGFK  GKEN V +L 
Sbjct: 875  VVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLT 934

Query: 1238 KSLYGLKQSPRQWYKRFDKFMM 1303
            KSLYGLKQ+PR WYKRFD F++
Sbjct: 935  KSLYGLKQAPRCWYKRFDSFII 956


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  397 bits (1021), Expect(2) = 0.0
 Identities = 202/348 (58%), Positives = 254/348 (72%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y R   DHC Y  +  DG FI LLLYVDDML+   ++  + +LKAQL +EF+MKDLG   
Sbjct: 960  YNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++  P+STPL  + KLS+ + P ++ 
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNM-QDYNPISTPLPVNYKLSSSMIPSSEA 1078

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV  VSR+M DPGK HW AVK ILRYI  T
Sbjct: 1079 ERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTVSRFMADPGKEHWNAVKRILRYIRGT 1138

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
                L F   G    +I GY DSD+AGDLDKR+STTGY+FTLA   VSW S LQ+ VALS
Sbjct: 1139 SGAALCF---GGSEFTIRGYVDSDFAGDLDKRKSTTGYVFTLAGGAVSWLSKLQTVVALS 1195

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA ++A KEAIW Q LLE+LG  Q+ ITV+CDS SA+H+A+N   H+RTKHI V
Sbjct: 1196 TTEAEYMAATQACKEAIWTQRLLEELGHKQQKITVYCDSPSALHIARNPAFHSRTKHIGV 1255

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHFVRE++EEG++ ++KIHT +N AD++TK + S KF  C     +L
Sbjct: 1256 QYHFVREVVEEGSVNMQKIHTKDNLADVMTKPINSDKFIWCRSSYGLL 1303



 Score =  388 bits (996), Expect(2) = 0.0
 Identities = 218/442 (49%), Positives = 282/442 (63%), Gaps = 8/442 (1%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E +T ++IK LRTDNGGEYT   F   C + GI R FTV  TPQQNGVAERMNRTL+E+ 
Sbjct: 537  ELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRTLLERT 596

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  AGL +  WAEA   A ++INR PS+AIG KTP+E+W GKP  DY SLRVFG   
Sbjct: 597  RAMLKTAGLAKSFWAEAAKTACYVINRSPSTAIGLKTPMEMWKGKP-GDYSSLRVFGCPV 655

Query: 362  Y--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTS 532
            Y  Y+ +E +KL+P+++R  F+G    VKGYRLW   ++KI  SRDV F E+ + K    
Sbjct: 656  YVMYNSQERTKLDPKSRRCTFLGYADNVKGYRLWDPTARKIFVSRDVIFVENELQK---E 712

Query: 533  EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIALR 712
            +K D   ++       VE+EE +           E+   + E E Q    ++ +EP   R
Sbjct: 713  QKNDGTTKETAT----VEIEEKS---------GEENSEAEPEHEEQEPNEVNDAEP---R 756

Query: 713  RPRREIHKPARFADMVANALPVI----DDDVPFTFREAVRSPESEKWKGAMEEEMQSLQK 880
            R  R+I KP+  ++ V  +        +D  P TF EAV   ++  W  AM+EE+++L +
Sbjct: 757  RTTRQIRKPSWHSEYVMASHDAYCLLSEDGEPSTFHEAVNGSDASLWMAAMQEEIEALHR 816

Query: 881  NKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSP 1057
            N TW++ +LPKG+KAIG KWVF  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSP
Sbjct: 817  NNTWELVELPKGRKAIGNKWVFKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSP 874

Query: 1058 VVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYKLI 1237
            VV+ ++IRI               DVKTAFLHG+LEEEIYM QPEGF+   +EN V +L 
Sbjct: 875  VVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRLT 934

Query: 1238 KSLYGLKQSPRQWYKRFDKFMM 1303
            KSLYGLKQ+PR WYKRFD F+M
Sbjct: 935  KSLYGLKQAPRCWYKRFDSFIM 956


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  397 bits (1019), Expect(2) = 0.0
 Identities = 198/348 (56%), Positives = 256/348 (73%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y R   DHC Y  +     FI LLLYVDD+L+   ++  + +LKAQL +EF+MKDLG   
Sbjct: 960  YNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ KP+STPL  + KLS+ +SP N+ 
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPISTPLPVNFKLSSGMSPSNEA 1078

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR+M DPGK HW AVK I+RYI  T
Sbjct: 1079 ERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGT 1138

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
              V + F   G    ++ GY DSD+AGD DKR+STTGY+FTL    VSW S LQ+ VALS
Sbjct: 1139 SGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALS 1195

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA ++A KEAIW+Q L+E+LG  Q+ ITV+CDSQSA+H+A+N   H+RTKHI V
Sbjct: 1196 TTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGV 1255

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHFVRE++EEG++ ++KIHT +N AD++TK + + KF  C     +L
Sbjct: 1256 QYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVWCRSSYGLL 1303



 Score =  385 bits (989), Expect(2) = 0.0
 Identities = 212/444 (47%), Positives = 284/444 (63%), Gaps = 10/444 (2%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E +T +KIK LRTDNGGEY    F   C + GIVR FTV  TPQQNGVAERMNRTL+E+ 
Sbjct: 537  ELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERT 596

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  A + +  WAEAV  A ++INR PS+ I  KTP+E+W GKPV DY SL VFG   
Sbjct: 597  RAMLKTAEMAKSFWAEAVKTACYVINRSPSTTIDLKTPMEMWKGKPV-DYSSLHVFGCPV 655

Query: 362  Y--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTS 532
            Y  Y+ +E +KL+P++++ +F+G    VKGYRLW   ++K++ SRDV F E+ +     +
Sbjct: 656  YVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKN 715

Query: 533  EKT--DSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIA 706
            + T  ++A+ Q+E   K+ +                   S + E   + QEP D +  + 
Sbjct: 716  DSTFKETAILQIEEKSKESD-------------------SSEAESVHEEQEPDDVNNGV- 755

Query: 707  LRRPRREIHKPARFADMVANALP----VIDDDVPFTFREAVRSPESEKWKGAMEEEMQSL 874
             RR  R+  KP+  +D V         + ++  P TF EA+   ++ +W  A+ EEM++L
Sbjct: 756  -RRSTRQTQKPSWQSDYVMTGHDAYCLIAEEGEPSTFHEALNGSDASQWMTAIHEEMEAL 814

Query: 875  QKNKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVF 1051
            +KNKTW++ +LPKG+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+F
Sbjct: 815  RKNKTWELVELPKGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIF 872

Query: 1052 SPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYK 1231
            SPVV+ ++IR+               DVKTAFLHG+LEEEIYM QPEGFK  GKEN V +
Sbjct: 873  SPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCR 932

Query: 1232 LIKSLYGLKQSPRQWYKRFDKFMM 1303
            L KSLYGLKQ+PR WYKRFD F++
Sbjct: 933  LTKSLYGLKQAPRCWYKRFDSFII 956


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  398 bits (1023), Expect(2) = 0.0
 Identities = 202/338 (59%), Positives = 255/338 (75%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y R   DHC Y  + +D  FI LLLYVDDML+A  ++  I +LKAQL +EFEMKDLG   
Sbjct: 964  YNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPAN 1023

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGM+I RDR + K+ L+QK YLKK+L+RF M ++ K +STPL  + KLS+ + P N+ 
Sbjct: 1024 KILGMQIHRDRNNRKIWLSQKNYLKKILRRFNM-QDCKSISTPLPVNFKLSSSMCPSNEA 1082

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ER  M +VPYA+AVGSLM+AM+CTRPDI+QAV  VSRYM +PG  HW AVK ILRYI  T
Sbjct: 1083 ERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGT 1142

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
             +V L +   G    ++ GY DSD+AGDLDKR+STTGY+FTLA A VSW S LQ+ VALS
Sbjct: 1143 SNVALCY---GGSEFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALS 1199

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA ++A KEAIW+Q LLE+LG  Q+ I V CDSQSA+H+A+N   H+RTKHI V
Sbjct: 1200 TTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFCDSQSALHIARNPAFHSRTKHIGV 1259

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKF 2325
            +YHFVRE++E+G++ L+KIHT EN AD+LTK + + KF
Sbjct: 1260 QYHFVREVVEDGSVDLQKIHTKENLADVLTKSINTDKF 1297



 Score =  377 bits (967), Expect(2) = 0.0
 Identities = 214/442 (48%), Positives = 276/442 (62%), Gaps = 8/442 (1%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E ++ +KIK LRTDNGGEYT   F   C + GI R FTV  TPQQNGVAERMNRTL E++
Sbjct: 537  ELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERI 596

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  AGL    WAEA   A +++NR PS+AIG KT +E+W+GKP  DY  L  FG   
Sbjct: 597  RAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPA-DYSYLHAFGCPV 655

Query: 362  Y--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTS 532
            Y  Y+ +E +KL+P++++ +F+G   GVKGYRLW   + KI+ SRDV F E  + +    
Sbjct: 656  YVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLWDPTAHKIVISRDVIFVEDQLQRKDGD 715

Query: 533  EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIALR 712
            + T    ++ E  P  VE           +NP   D S+   E  + QEP++   P  +R
Sbjct: 716  DGT--VKEKSETVPVYVE-----------NNPENSDSSEAAPEH-EEQEPVESEAP-EVR 760

Query: 713  RPRREIHKPARFADMVANA----LPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQK 880
            R  RE   P   ++ V         + +D  P TF EA+ S +   W  AM+EE+++L K
Sbjct: 761  RSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHK 820

Query: 881  NKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSP 1057
            NKTW++  LP G+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSP
Sbjct: 821  NKTWELVPLPHGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSP 878

Query: 1058 VVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYKLI 1237
            VV+ +++RI               DVKTAFLHG+LEEEIYM QPEGF   GKEN V +L 
Sbjct: 879  VVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLN 938

Query: 1238 KSLYGLKQSPRQWYKRFDKFMM 1303
            KSLYGLKQ+PR WYKRFD F+M
Sbjct: 939  KSLYGLKQAPRCWYKRFDSFIM 960


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  397 bits (1019), Expect(2) = 0.0
 Identities = 202/338 (59%), Positives = 255/338 (75%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y R   DHC Y  + +D  FI LLLYVDDML+A  ++  I +LKAQL +EFEMKDLG   
Sbjct: 964  YNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPAN 1023

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGM+I RDR + K+ L+QK YLKK+L+RF M ++ K +ST L  + KLS+ + P N+ 
Sbjct: 1024 KILGMQIHRDRNNMKIWLSQKNYLKKILRRFNM-QDCKSISTSLPVNFKLSSSMCPSNEA 1082

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ER  M +VPYA+AVGSLM+AM+CTRPDI+QAV VVSRYM +PG  HW AVK ILRYI  T
Sbjct: 1083 ERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGT 1142

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
             DV L +   G    ++ GY DSD+AGDLDKR+STTGY+FTLA A VSW S LQ+ VALS
Sbjct: 1143 SDVALCY---GGSEFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALS 1199

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEYMA ++A K+AIW+Q LLE+LG  Q+ I V CDSQSA+H+A+N   H+RTKHI V
Sbjct: 1200 TTEAEYMAATQACKKAIWIQRLLEELGHKQQKILVFCDSQSALHIARNPAFHSRTKHIGV 1259

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKF 2325
            +YHFVRE++E+G++ L+KIHT EN AD+LTK + + KF
Sbjct: 1260 QYHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDKF 1297



 Score =  377 bits (967), Expect(2) = 0.0
 Identities = 214/442 (48%), Positives = 276/442 (62%), Gaps = 8/442 (1%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E ++ +KIK LRTDNGGEYT   F   C + GI R FTV  TPQQNGVAERMNRTL E++
Sbjct: 537  ELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRTLTERI 596

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  AGL    WAEA   A +++NR PS+AIG KT +E+W+GKP  DY  L  FG   
Sbjct: 597  RAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAMEMWTGKPA-DYSYLHAFGCPM 655

Query: 362  Y--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTS 532
            Y  Y+ +E +KL+ +++R +F+G   GVKGYRLW   + KI+ SRDV F E  + +    
Sbjct: 656  YVMYNAQERTKLDAKSRRCIFLGYADGVKGYRLWDPTAHKIVISRDVIFVEDQLQRKDGD 715

Query: 533  EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPIALR 712
            + T    ++ E  P  VE           +NP   D S+   E  + QEP++   P  +R
Sbjct: 716  DGT--VKEKSETVPVYVE-----------NNPENSDSSEAAPEH-EEQEPVESEAP-EVR 760

Query: 713  RPRREIHKPARFADMVANA----LPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQK 880
            R  RE   P   ++ V         + +D  P TF EA+ S +   W  AM+EE+++L K
Sbjct: 761  RSTRERRPPTWHSEYVTEINVAYCLLTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHK 820

Query: 881  NKTWKVTQLPKGKKAIGCKWVFA-KKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSP 1057
            NKTW++  LP+G+KAIG KWV+  K+DG  N    RY+ARLV KGYAQKEGID+NE+FSP
Sbjct: 821  NKTWELVPLPRGRKAIGNKWVYKIKRDG--NDQVERYRARLVVKGYAQKEGIDFNEIFSP 878

Query: 1058 VVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYKLI 1237
            VV+ +++RI               DVKTAFLHG+LEEEIYM QPEGF   GKEN V +L 
Sbjct: 879  VVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLN 938

Query: 1238 KSLYGLKQSPRQWYKRFDKFMM 1303
            KSLYGLKQ+PR WYKRFD F+M
Sbjct: 939  KSLYGLKQAPRYWYKRFDSFIM 960


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  384 bits (987), Expect(2) = 0.0
 Identities = 196/341 (57%), Positives = 250/341 (73%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y R   D C Y  +    +F+ LLLYVDDML+A  ++  ID+LKAQL +EFEMKDLG   
Sbjct: 953  YNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPAN 1012

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGM+I RDR + K+ L+QK YLKK+L RF M ++ K +STPL  +LK+S+ +SP N+E
Sbjct: 1013 KILGMQIHRDRGNRKIWLSQKNYLKKILSRFSM-QDCKSISTPLPINLKVSSSMSPSNEE 1071

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
             R  M +VPYA+AVGSLM+AM+CTRPDI+QAV VVSRYM +PG+ HW  VK ILRYI  T
Sbjct: 1072 GRMEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSRYMANPGREHWNCVKRILRYIKGT 1131

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
             DV L +   G     I GY DSDYAGDLDK +STTGY+F +A   VSW S LQ+ VA S
Sbjct: 1132 SDVALCY---GGSDFIINGYVDSDYAGDLDKSKSTTGYVFKVAGGAVSWVSKLQAVVATS 1188

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEY+A ++A KEAIWL+ LLE+LG  Q+ +++ CDSQSA+HLA+N   H+RTKHI V
Sbjct: 1189 TTEAEYVAATQASKEAIWLKMLLEELGHKQEFVSLFCDSQSALHLARNPAFHSRTKHIRV 1248

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHC 2334
            +YHF+RE ++EG + L+KIHT +N AD LTK++   KF  C
Sbjct: 1249 QYHFIREKVKEGTVDLQKIHTADNVADFLTKIINVDKFTWC 1289



 Score =  379 bits (974), Expect(2) = 0.0
 Identities = 211/442 (47%), Positives = 281/442 (63%), Gaps = 8/442 (1%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E  + +KIK  RTDNGGEYTS+ F + C K GI R FTV  TPQQNGVAERMNRTL+E+ 
Sbjct: 527  ELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMNRTLLERT 586

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  AGL +  WAEAV  A +L+NR PS+AI  KTP+E+W+GKPV DY +L +FGS+ 
Sbjct: 587  RAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPV-DYSNLHIFGSIV 645

Query: 362  Y--YHVKE-SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTS 532
            Y  Y+ +E +KL+P++++  F+G   GVKGYRLW   + K++ SRDV F E  + +    
Sbjct: 646  YAMYNAQEITKLDPKSRKCRFLGYADGVKGYRLWDPTAHKVVISRDVIFVEDRLQRGEVD 705

Query: 533  EKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPI-AL 709
            + T+   ++ E T  Q++VEE             E   D  E E   +EP  +S      
Sbjct: 706  DSTEK--EKPETT--QIQVEE-------------EFEQDSSEAEPAHEEPEPESSGAPTT 748

Query: 710  RRPRREIHKPARFADMVANA----LPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQ 877
            R+  RE  +P   +D V         + +D  P TF+EA+ S +  +W  AM+EE+++L 
Sbjct: 749  RQSDREKRRPTWHSDYVMEGNVAYCLLTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALH 808

Query: 878  KNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSP 1057
            KN TW +  LP+G+K IG KWVF  K    ++ + RY+ARLV KGYAQKEGID+NE+FSP
Sbjct: 809  KNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQVE-RYRARLVVKGYAQKEGIDFNEIFSP 867

Query: 1058 VVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYKLI 1237
            VV+ +++R+               DVKTAFLHGDLEEEIYM QPEGF+    +N V +L 
Sbjct: 868  VVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLN 927

Query: 1238 KSLYGLKQSPRQWYKRFDKFMM 1303
            KSLYGLKQ+PR WYKRFD F+M
Sbjct: 928  KSLYGLKQAPRCWYKRFDSFIM 949


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  374 bits (960), Expect(2) = 0.0
 Identities = 190/350 (54%), Positives = 249/350 (71%)
 Frame = +1

Query: 1303 GAKYTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLG 1482
            G KYTRS YD CVY  K    ++IYLLLYVDDMLIAS ++ E+++LK  L++EFEMKDLG
Sbjct: 986  GIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLG 1045

Query: 1483 ETKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPK 1662
            + KKILGMEISRDR +G L L+Q+ Y+KKVL+ F M +N KPVSTPL  H KL A    +
Sbjct: 1046 DAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQM-DNAKPVSTPLGIHFKLKAATDKE 1104

Query: 1663 NDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYI 1842
             +E+ + M  VPYAN +GS+MY+M+ TRPD++ ++ V+SR+M  P K HWQAVKW+LRY+
Sbjct: 1105 YEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYM 1164

Query: 1843 LNTVDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTV 2022
              T    L F +       + GYCDSDY  + D RRS TGY+FT+    +SWKS LQ  V
Sbjct: 1165 RGTEKKKLCFRKQEDF--LLRGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVV 1222

Query: 2023 ALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKH 2202
            A+S+TEAEYMA++EAVKEA+WL+    +LG  Q ++ VH DSQSAI LAKN V H RTKH
Sbjct: 1223 AISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLAKNSVHHERTKH 1282

Query: 2203 IDVRYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINI 2352
            ID+R HF+R+I+  G I + KI T  NPA++ TK V   KF+  L+++ +
Sbjct: 1283 IDIRLHFIRDIICAGLIKVVKIATECNPANIFTKTVPLAKFEGALNMLRV 1332



 Score =  369 bits (947), Expect(2) = 0.0
 Identities = 212/466 (45%), Positives = 277/466 (59%), Gaps = 31/466 (6%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            ENQ+ RK+K LRTDNG EY +  F++ C + GIVRH T   TPQQNG+AER+NRT+++KV
Sbjct: 530  ENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKV 589

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R MLS +G+ ++ WAEA + A +LINR PS+AI    P E W+G  + D  SLR FG LA
Sbjct: 590  RSMLSRSGMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTG-ALPDLSSLRKFGCLA 648

Query: 362  YYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKT 541
            Y H  + KL PR+K+ +F     GVKGY++W LE KK + SR+V F E  M K +   K 
Sbjct: 649  YIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDKKCVISRNVIFREQVMFKDL---KG 705

Query: 542  DSALQQVERTPKQVEVEEMAIIPAKND-----------------------NPV--TEDLS 646
            DS     + T  + ++E++ + P  ND                       NPV  +   S
Sbjct: 706  DS-----QNTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPVLNSPTHS 760

Query: 647  DDDEEEVQTQEPLDQSEPIAL--RRPRREIHKPARF--ADMVANALPVIDD--DVPFTFR 808
             D+E E +  + ++      L   R RR I    ++  ++MV  A    DD    P +++
Sbjct: 761  QDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYSEDDGKPEPKSYQ 820

Query: 809  EAVRSPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRY 988
            EA+  P+ EKW  AM+EEM S+ KN TW +   P+  K IGC+WVF +K G P     R+
Sbjct: 821  EALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRF 880

Query: 989  KARLVAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEE 1168
             ARLVAKG+ QKEG+DYNE+FSPVVKH SIR                DVKTAFLHG LEE
Sbjct: 881  IARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEE 940

Query: 1169 EIYMTQPEGFKVAGKENWVYKLIKSLYGLKQSPRQWYKRFDKFMMG 1306
            EIYM QPEGF++    N V  L +SLYGLKQSPRQW  RFD+FM G
Sbjct: 941  EIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRG 986


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  376 bits (966), Expect(2) = 0.0
 Identities = 188/347 (54%), Positives = 243/347 (70%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            + +S YD C Y   L DGS +YLL+YVDD+L+AS+++  I  LKA L   FEMKDLG  K
Sbjct: 1010 FVKSAYDSCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAK 1069

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILGMEI RDRT G L L+Q+ YL K+L+ + M E  KP  TPL  H K  A    K   
Sbjct: 1070 KILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAE-AKPAMTPLGAHFKFQAATEQKLIR 1128

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            + D+M  VPY++AVGS+MYAM+ TRPD++  V ++SR+M  P K HW  VKW+LRYI  T
Sbjct: 1129 DEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVLRYIKGT 1188

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
            +   L +++      SIVGYCD+DYA DLDKRRS TG +FTL    +SWKS LQ  VA S
Sbjct: 1189 LKTRLCYKKSSSF--SIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQS 1246

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTE+EYM+++EAVKEAIWL+ LL+D G  QK + + CDSQSAI L+KN V H RTKHIDV
Sbjct: 1247 TTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDV 1306

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINI 2352
            +YHF+REI+ +G + + KI T +NPAD+ TKV+   KF+  L+L+ +
Sbjct: 1307 KYHFIREIISDGTVEVLKISTEKNPADIFTKVLAVSKFQAALNLLRV 1353



 Score =  365 bits (936), Expect(2) = 0.0
 Identities = 201/456 (44%), Positives = 278/456 (60%), Gaps = 23/456 (5%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            ENQT R++K LRTDNG E+ +  F   C   GI RH T   TPQQNGVAERMNRT++EKV
Sbjct: 554  ENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNGVAERMNRTIMEKV 613

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R MLS++GL ++ WAEA      LIN+ PSSA+  + P + WSG P   Y  LR +G +A
Sbjct: 614  RSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPPV-YSYLRRYGCVA 672

Query: 362  YYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEKT 541
            + H  + KLEPRAK+ + +G   GVKGY++W L+ +K + SR++ F E+A+ K +   + 
Sbjct: 673  FVHTDDGKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVSRNIIFQENAVYKDLMQRQE 732

Query: 542  DSALQQVERTPKQVEV--------------EEMAIIPAKND----NPVTEDLSDDDEEEV 667
            + + ++ ++T   +E               E +  IPA        P T+D +DD++ +V
Sbjct: 733  NVSTEEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPAPESPVVSTPTTQDTNDDEDSDV 792

Query: 668  QTQEPLDQSEPIALRRPRREIHKPARF--ADMVANALPVIDDDV---PFTFREAVRSPES 832
              Q PL  S  +   R +REI  P RF   D  A AL   +D     P  +R+A      
Sbjct: 793  N-QSPL--SYHLVRDRDKREIRAPRRFDDEDYYAEALYTTEDGEAVEPENYRKAKLDANF 849

Query: 833  EKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKG 1012
            +KWK AM+EE+ S +KN TW +   P+ ++ IGC+W+F  K G     + R+KARLVAKG
Sbjct: 850  DKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKG 909

Query: 1013 YAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPE 1192
            YAQKEGIDY+E+F+PVVKH SIR+               DVKTAFLHG+L+E+IYM+ PE
Sbjct: 910  YAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAFLHGELKEKIYMSPPE 969

Query: 1193 GFKVAGKENWVYKLIKSLYGLKQSPRQWYKRFDKFM 1300
            G++   K N V  L K+LYGLKQ+P+QW ++FD FM
Sbjct: 970  GYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFM 1005


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  385 bits (988), Expect(2) = 0.0
 Identities = 194/347 (55%), Positives = 257/347 (74%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            Y ++  D CVY  +  + +FI LLLYVDDMLI  + +  I KLK  L++ F+MKDLG  +
Sbjct: 983  YLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQ 1042

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            +ILGM+I R+RTS KL L+Q++Y+++VL+RF M +N KPVSTPLA HLKLS ++ P   E
Sbjct: 1043 QILGMKIVRERTSRKLWLSQEKYIERVLERFNM-KNAKPVSTPLAGHLKLSKKMCPTTVE 1101

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            E+  M KVPY++AVGSLMYAMVCTRPDI+ AV VVSR++ +PGK HW+AVKWILRY+  T
Sbjct: 1102 EKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGT 1161

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
                L F   G     + GY D+D AGD+D R+S+TGYLFT +   +SW+S LQ  VALS
Sbjct: 1162 TGDCLCF---GGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALS 1218

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEY+A +E  KE IWL+  L++LG+ QK   V+CDSQSAI L+KN + HARTKHIDV
Sbjct: 1219 TTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDV 1278

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINI 2352
            RYH++RE++++ ++ + KI T ENPADMLTKVV   KF+ C +L+ +
Sbjct: 1279 RYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325



 Score =  346 bits (888), Expect(2) = 0.0
 Identities = 208/460 (45%), Positives = 277/460 (60%), Gaps = 23/460 (5%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E +T RK+K LR+DNGGEYTS  F+E C  +GI    TV  TPQ NGVAERMNRT+VEKV
Sbjct: 537  ERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKV 596

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R ML  A L +  W EAV  A +LINR PS  +  + P  VW+ K V+ Y  L+VFG  A
Sbjct: 597  RSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVS-YSHLKVFGCRA 655

Query: 362  YYHV---KESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTV-T 529
            + HV   + +KL+ ++   +F+G      GYRLW    KK++ SRDV F E  +      
Sbjct: 656  FAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADM 715

Query: 530  SEKTDSALQQVERTPKQVEVEEMAIIPAKNDNP-----VTEDLSDDDE---EEVQTQEPL 685
            SEK  + +           +     IP+ ++NP      T+++S+  E   E ++  E L
Sbjct: 716  SEKVKNGI-----------IPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQL 764

Query: 686  DQS-EPIALRRPRREIHKPARFAD---MVANALP------VIDDDVPFTFREAVRSPESE 835
            D+  E +       E H+P R ++   + +   P      + DD  P + +E +  PE  
Sbjct: 765  DEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKN 824

Query: 836  KWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVF-AKKDGFPNKNDVRYKARLVAKG 1012
            +   AM+EEM+SLQKN T+K+ +LPKGK+ + CKWVF  KKDG  +   VRYKARLV KG
Sbjct: 825  QLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDG--DCKLVRYKARLVVKG 882

Query: 1013 YAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPE 1192
            + QK+GID++E+FSPVVK +SIR                DVKTAFLHGDLEEEIYM QPE
Sbjct: 883  FEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPE 942

Query: 1193 GFKVAGKENWVYKLIKSLYGLKQSPRQWYKRFDKFMMGRS 1312
            GF+VAGK++ V KL KSLYGLKQ+PRQWY +FD FM  ++
Sbjct: 943  GFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQT 982


>emb|CAN74198.1| hypothetical protein VITISV_005765 [Vitis vinifera]
          Length = 1261

 Score =  374 bits (959), Expect(2) = 0.0
 Identities = 194/348 (55%), Positives = 245/348 (70%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            + R + DHC Y  K  D S+I LLLYVDDMLIA     +I+ LK QL+++F MKDLG  K
Sbjct: 918  FKRCEADHCCYF-KSFDNSYIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAK 976

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            +ILGM I RD+ +G L L+Q +Y+KKVL RF M E  KPVSTPL  H KLS + SPK +E
Sbjct: 977  QILGMRIIRDKANGTLKLSQSEYVKKVLXRFNMNE-AKPVSTPLGSHFKLSKEQSPKTEE 1035

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ERD M KVPYA+A+GSLMYAMVCTR DI+ AV VVSR+M  PGK HW+AVKWILRY+  +
Sbjct: 1036 ERDXMSKVPYASAIGSLMYAMVCTRLDIAHAVGVVSRFMSXPGKQHWEAVKWILRYLKGS 1095

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
            +D  L F         + GY D+D+AGD+D R+STTG++FTL    +SW S LQ  V LS
Sbjct: 1096 LDTCLCFTG---ASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLS 1152

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEY+A +EA KE IWL   L++LG  Q+   +H DSQSAI LAKN   H+++KHI  
Sbjct: 1153 TTEAEYVAATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQT 1212

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHF+R ++E+  ++LEKI  ++NPADMLTK VT  K K C   I +L
Sbjct: 1213 KYHFIRYLVEDKLVILEKICGSKNPADMLTKGVTIEKLKLCAASIGLL 1260



 Score =  350 bits (897), Expect(2) = 0.0
 Identities = 205/440 (46%), Positives = 272/440 (61%), Gaps = 7/440 (1%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E +T  K+K LR+DNGGEY    F E C   GI    T+  TPQQNGVAERMNRTL E+ 
Sbjct: 491  ETETGLKVKCLRSDNGGEYIDGGFSEYCXAQGIRMEKTIPGTPQQNGVAERMNRTLNERA 550

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R M  +AGL +  WA+AV+ A +LINR PS  +  + P EVWSGK V  +  L+VFG ++
Sbjct: 551  RSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVK-FSHLKVFGCVS 609

Query: 362  YYHVKE---SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLK---T 523
            Y H+     SKL+ ++K   F+G      GYR W  +++KI+ SR+V F+E  M K   T
Sbjct: 610  YVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRST 669

Query: 524  VTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPI 703
            VTS+ T+   ++ E     V ++E+            +   ++D+E V +Q  +D S PI
Sbjct: 670  VTSDVTEIDQKKSEF----VNLDELT-------ESTVQKGGEEDKENVNSQ--VDLSTPI 716

Query: 704  A-LRRPRREIHKPARFADMVANALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQK 880
              +RR  R    P R++  V N L + D   P  + EA++   S KW+ AM++EM SL  
Sbjct: 717  VEVRRSSRNTRPPQRYSP-VLNYLLLTDGGEPECYDEALQDENSSKWELAMKDEMDSLLG 775

Query: 881  NKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPV 1060
            N+TW++T+LP GKKA+  KWV+  K+   +    RYKARLV KG+ QKEGIDY E+FSPV
Sbjct: 776  NQTWZLTELPVGKKALHNKWVYRIKN--EHDGSKRYKARLVVKGFQQKEGIDYTEIFSPV 833

Query: 1061 VKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYKLIK 1240
            VK S+IR+               DVKTAFLHGDLEE++YM QPEGF V G+EN V KL K
Sbjct: 834  VKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRK 893

Query: 1241 SLYGLKQSPRQWYKRFDKFM 1300
            SLYGLKQ+PRQWYK+FD FM
Sbjct: 894  SLYGLKQAPRQWYKKFDNFM 913


>emb|CAN69340.1| hypothetical protein VITISV_032634 [Vitis vinifera]
          Length = 1298

 Score =  375 bits (962), Expect(2) = 0.0
 Identities = 192/348 (55%), Positives = 248/348 (71%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            + R + DHC Y+ K  D S+I LLLYVDDMLIA     +I+ LK QL+++F MKDLG  K
Sbjct: 955  FKRCEADHCCYV-KSFDNSYIILLLYVDDMLIAGSDIEKINNLKKQLSKQFAMKDLGAAK 1013

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            +ILGM I RD+ +G L L+Q +Y+KKVL RF M E  KPVSTPL  H KLS + SPK +E
Sbjct: 1014 QILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNE-AKPVSTPLGSHFKLSKEQSPKTEE 1072

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            ERD+M KVPYA+ +GSLMYAMVCTRPDI+ AV +VSR+M  PGK +W+AVKWILRY+  +
Sbjct: 1073 ERDHMSKVPYASTIGSLMYAMVCTRPDIAHAVGIVSRFMSRPGKQNWEAVKWILRYLKGS 1132

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
            +D  L F         + GY D+D+AGD+D R+STTG++FTL    +SW S LQ  V LS
Sbjct: 1133 LDTCLCFTG---ASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLS 1189

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            TTEAEY+A +EA KE IWL   L++LG  Q+   +H DSQSAI LAKN   H+++KHI  
Sbjct: 1190 TTEAEYVAATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAKNSAFHSKSKHIQT 1249

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINIL 2355
            +YHF+R ++E+  ++LEKI  ++NPADMLTK VT  K K C   I++L
Sbjct: 1250 KYHFIRYLVEDKLVILEKICGSKNPADMLTKGVTIEKLKLCAASISLL 1297



 Score =  346 bits (887), Expect(2) = 0.0
 Identities = 201/439 (45%), Positives = 270/439 (61%), Gaps = 6/439 (1%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            E +T  K+K LR+DNGGEY    F E C   GI    T+  TPQQNGVAERMNRTL E+ 
Sbjct: 528  ETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERA 587

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGKPVTDYDSLRVFGSLA 361
            R M  +AGL +  WA+AV+ A +LINR PS  +  + P EVWSGK V  +  L+VFG ++
Sbjct: 588  RSMRLHAGLPKTFWADAVSTAAYLINRGPSVPMEFRLPEEVWSGKEVK-FSHLKVFGCVS 646

Query: 362  YYHVKE---SKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLK---T 523
            Y H+     SKL+ ++K   F+G      GYR W  +++KI+ SR+V F+E  M K   T
Sbjct: 647  YVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRLT 706

Query: 524  VTSEKTDSALQQVERTPKQVEVEEMAIIPAKNDNPVTEDLSDDDEEEVQTQEPLDQSEPI 703
            VTS  T+   ++ E     V ++E+            +   ++D+E V ++  L ++  +
Sbjct: 707  VTSXVTEIDQKKSEF----VNLDELT-------ESTVQKRGEEDKENVNSKVDL-RTPVV 754

Query: 704  ALRRPRREIHKPARFADMVANALPVIDDDVPFTFREAVRSPESEKWKGAMEEEMQSLQKN 883
             +RR  R I  P R++  V N L + D   P  + EA++   S KW+ AM++EM SL  N
Sbjct: 755  EVRRSSRNIRPPQRYSP-VLNYLLLTDGGEPECYNEALQDENSSKWELAMKDEMDSLLGN 813

Query: 884  KTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARLVAKGYAQKEGIDYNEVFSPVV 1063
            +TW++T+LP GKKA+  KWV+  K+   +    RYKARLV KG+ QKEGIDY E+FSPVV
Sbjct: 814  QTWELTELPVGKKALHNKWVYRIKN--EHDGSKRYKARLVVKGFQQKEGIDYIEIFSPVV 871

Query: 1064 KHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVYKLIKS 1243
            K S+IR+               DVKT FLHGDLEE++YM QPEGF V G+EN V KL KS
Sbjct: 872  KMSTIRLVLGMVAVENLHLEQLDVKTTFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKS 931

Query: 1244 LYGLKQSPRQWYKRFDKFM 1300
            LYGLKQ+PRQWYK+FD FM
Sbjct: 932  LYGLKQAPRQWYKKFDNFM 950


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  380 bits (975), Expect(2) = 0.0
 Identities = 190/347 (54%), Positives = 246/347 (70%)
 Frame = +1

Query: 1312 YTRSKYDHCVYLHKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGETK 1491
            + RS YD C Y  KL D S +YLL YVDDML+A+ +   ID LK +L+ +FEMKDLG  K
Sbjct: 1017 FKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAK 1076

Query: 1492 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVSTPLAPHLKLSAQLSPKNDE 1671
            KILG+EI  DR +G L L+Q+ YL KVL+ F M E+ KP  TPL  HLK+ +    K   
Sbjct: 1077 KILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLES-KPALTPLGAHLKMKSATEEKLST 1135

Query: 1672 ERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRYMHDPGKGHWQAVKWILRYILNT 1851
            E +YM+ VPY++AVGS+MYAM+ TRPD++  V VVSR+M  P K HW  VKW+LRYI  T
Sbjct: 1136 EEEYMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIKGT 1195

Query: 1852 VDVGLVFEQDGKLGQSIVGYCDSDYAGDLDKRRSTTGYLFTLAKAPVSWKSTLQSTVALS 2031
            VD  L ++++     SI GYCD+DYA DLDKRRS TG +FTL    +SWKS LQ  VA S
Sbjct: 1196 VDTRLCYKRNSDF--SICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQS 1253

Query: 2032 TTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCDSQSAIHLAKNQVLHARTKHIDV 2211
            +TE EYM+++EAVKEAIWL+ LL+D G  QK++ + CDSQSAI L+KN V H RTKHIDV
Sbjct: 1254 STECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDV 1313

Query: 2212 RYHFVREILEEGNILLEKIHTTENPADMLTKVVTSIKFKHCLDLINI 2352
            ++HF+REI+ +G + + KI T +NPAD+ TKV+   KF+  LD + +
Sbjct: 1314 KFHFIREIIADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFLRV 1360



 Score =  340 bits (873), Expect(2) = 0.0
 Identities = 197/460 (42%), Positives = 268/460 (58%), Gaps = 27/460 (5%)
 Frame = +2

Query: 2    ENQTRRKIKVLRTDNGGEYTSDPFQEVCHKYGIVRHFTVRRTPQQNGVAERMNRTLVEKV 181
            ENQ+  ++K LRTDNG E+ +  F   C + G  RH T   TPQQNGV ERMNRT++EKV
Sbjct: 561  ENQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQQNGVVERMNRTIMEKV 620

Query: 182  RCMLSNAGLGRQHWAEAVTYAQHLINRLPSSAIGGKTPLEVWSGK-PVTDYDSLRVFGSL 358
            R ML ++GL ++ WAEA   A  LIN+ P SAI  + P + WSGK P+  Y  LR +G +
Sbjct: 621  RSMLCDSGLPKRFWAEATHTAVLLINKTPCSAINFEFPDKRWSGKAPIYSY--LRRYGCV 678

Query: 359  AYYHVKESKLEPRAKRALFMGITSGVKGYRLWCLESKKILFSRDVTFDEHAMLKTVTSEK 538
             + H    KL  RAK+ + +G  SGVKGY++W +E KK + SR+V+F E+A+ K +   K
Sbjct: 679  TFVHTDGGKLNLRAKKGVLIGYPSGVKGYKVWLIEEKKCVVSRNVSFQENAVYKDLMQRK 738

Query: 539  TDSALQQVERTPKQVEVEEMAIIPAKNDN------------PVTEDL---------SDDD 655
               + ++ +     ++++    + A  DN            P T            +DD 
Sbjct: 739  EQVSCEEDDHAGSYIDLD----LEADKDNSSGGEQSQAQVTPATRGAVTSTPPRYETDDI 794

Query: 656  EEEVQTQEPLDQSEPIALRRPRREIHKPARF--ADMVANALPVIDDD---VPFTFREAVR 820
            EE    Q PL  S  +   R RREI  P RF   D  A AL   +D     P  ++EAVR
Sbjct: 795  EETDVHQSPL--SYHLVRDRERREIRAPRRFDDEDYYAEALYTTEDGDAVEPADYKEAVR 852

Query: 821  SPESEKWKGAMEEEMQSLQKNKTWKVTQLPKGKKAIGCKWVFAKKDGFPNKNDVRYKARL 1000
                +KW+ AM EE++S  KN TW     P+ ++ IG +W++  K G P   + R+KARL
Sbjct: 853  DENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSRWIYKYKQGIPGVEEPRFKARL 912

Query: 1001 VAKGYAQKEGIDYNEVFSPVVKHSSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYM 1180
            VAKGYAQ+EG+DY+E+F+PVVKH SIRI               DVKTAFLHG+L+E+IYM
Sbjct: 913  VAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLELEQLDVKTAFLHGELKEKIYM 972

Query: 1181 TQPEGFKVAGKENWVYKLIKSLYGLKQSPRQWYKRFDKFM 1300
              PEG +   KEN V  L KSLYGLKQ+PRQW ++F+ +M
Sbjct: 973  MPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYM 1012